0s autopkgtest [15:06:58]: starting date and time: 2025-03-15 15:06:58+0000 0s autopkgtest [15:06:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:06:58]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rca_1n96/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-genomicranges --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-21.secgroup --name adt-plucky-arm64-r-bioc-genomicranges-20250315-150658-juju-7f2275-prod-proposed-migration-environment-15-858fff2d-b0a8-461a-a696-48253113a874 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 139s autopkgtest [15:09:17]: testbed dpkg architecture: arm64 139s autopkgtest [15:09:17]: testbed apt version: 2.9.33 140s autopkgtest [15:09:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 140s autopkgtest [15:09:18]: testbed release detected to be: None 141s autopkgtest [15:09:19]: updating testbed package index (apt update) 141s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 142s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 142s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 142s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 142s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 142s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 142s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 143s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 143s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 143s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 143s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 143s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 143s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 143s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 144s Fetched 1094 kB in 2s (574 kB/s) 145s Reading package lists... 146s + lsb_release --codename --short 146s + RELEASE=plucky 146s + cat 146s + [ plucky != trusty ] 146s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 147s Calculating upgrade... 148s The following packages will be upgraded: 148s python3-jinja2 strace 148s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 608 kB of archives. 148s After this operation, 11.3 kB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 150s Fetched 608 kB in 1s (543 kB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 150s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 150s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 150s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 150s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 150s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 151s Setting up strace (6.13+ds-1ubuntu1) ... 151s Processing triggers for man-db (2.13.0-1) ... 152s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 152s + /usr/lib/apt/apt-helper analyze-pattern ?true 152s + uname -r 152s + sed s/\./\\./g 152s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 152s + apt list ?obsolete 152s + tail -n+2 152s + + cut -d/ -f1 152s grep -v ^linux-.*6\.14\.0-10-generic.* 153s + obsolete_pkgs=linux-headers-6.11.0-8-generic 153s linux-headers-6.11.0-8 153s linux-image-6.11.0-8-generic 153s linux-modules-6.11.0-8-generic 153s linux-tools-6.11.0-8-generic 153s linux-tools-6.11.0-8 153s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Solving dependencies... 154s The following packages will be REMOVED: 154s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 154s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 154s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 154s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 155s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 155s After this operation, 267 MB disk space will be freed. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 155s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 155s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 155s Removing libpython3.12t64:arm64 (3.12.9-1) ... 155s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 155s Removing libnsl2:arm64 (1.3.0-3build3) ... 155s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 155s Removing libunwind8:arm64 (1.6.2-3.1) ... 155s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 158s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 158s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 158s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 158s /etc/kernel/postrm.d/initramfs-tools: 158s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 158s /etc/kernel/postrm.d/zz-flash-kernel: 158s flash-kernel: Kernel 6.11.0-8-generic has been removed. 158s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 159s /etc/kernel/postrm.d/zz-update-grub: 159s Sourcing file `/etc/default/grub' 159s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 159s Generating grub configuration file ... 159s Found linux image: /boot/vmlinuz-6.14.0-10-generic 159s Found initrd image: /boot/initrd.img-6.14.0-10-generic 160s Warning: os-prober will not be executed to detect other bootable partitions. 160s Systems on them will not be added to the GRUB boot configuration. 160s Check GRUB_DISABLE_OS_PROBER documentation entry. 160s Adding boot menu entry for UEFI Firmware Settings ... 160s done 160s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 160s Processing triggers for libc-bin (2.41-1ubuntu1) ... 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 160s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 160s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 160s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 161s + grep -q trusty /etc/lsb-release 161s + [ ! -d /usr/share/doc/unattended-upgrades ] 161s + [ ! -d /usr/share/doc/lxd ] 161s + [ ! -d /usr/share/doc/lxd-client ] 161s + [ ! -d /usr/share/doc/snapd ] 161s + type iptables 161s + cat 161s + chmod 755 /etc/rc.local 161s + . /etc/rc.local 161s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 161s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 161s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 161s + uname -m 161s + [ aarch64 = ppc64le ] 161s + [ -d /run/systemd/system ] 161s + systemd-detect-virt --quiet --vm 161s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 161s + cat 161s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 161s + echo COMPRESS=lz4 161s autopkgtest [15:09:39]: upgrading testbed (apt dist-upgrade and autopurge) 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 165s Entering ResolveByKeep 165s 165s Calculating upgrade... 166s The following packages will be upgraded: 166s libc-bin libc-dev-bin libc6 libc6-dev locales 167s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 9530 kB of archives. 167s After this operation, 0 B of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 173s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 173s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 173s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 173s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 177s Preconfiguring packages ... 177s Fetched 9530 kB in 10s (917 kB/s) 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 177s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 177s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 178s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 178s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Setting up libc6:arm64 (2.41-1ubuntu2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 179s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 179s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Setting up libc-bin (2.41-1ubuntu2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 179s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 179s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Setting up locales (2.41-1ubuntu2) ... 180s Generating locales (this might take a while)... 183s en_US.UTF-8... done 183s Generation complete. 183s Setting up libc-dev-bin (2.41-1ubuntu2) ... 183s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 183s Processing triggers for man-db (2.13.0-1) ... 184s Processing triggers for systemd (257.3-1ubuntu3) ... 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 186s Solving dependencies... 187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [15:10:05]: rebooting testbed after setup commands that affected boot 210s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 217s autopkgtest [15:10:35]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 220s autopkgtest [15:10:38]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicranges 223s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (dsc) [2345 B] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (tar) [1058 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicranges 1.58.0+dfsg-2 (diff) [6392 B] 223s gpgv: Signature made Sun Jan 12 14:11:09 2025 UTC 223s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 223s gpgv: issuer "crusoe@debian.org" 223s gpgv: Can't check signature: No public key 223s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicranges_1.58.0+dfsg-2.dsc: no acceptable signature found 224s autopkgtest [15:10:42]: testing package r-bioc-genomicranges version 1.58.0+dfsg-2 224s autopkgtest [15:10:42]: build not needed 232s autopkgtest [15:10:50]: test pkg-r-autopkgtest: preparing testbed 232s Reading package lists... 233s Building dependency tree... 233s Reading state information... 233s Starting pkgProblemResolver with broken count: 0 233s Starting 2 pkgProblemResolver with broken count: 0 233s Done 234s The following NEW packages will be installed: 234s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 234s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 234s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 234s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 234s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 234s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 234s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 234s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 234s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 234s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 234s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 234s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 234s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 234s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 234s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 234s libjs-popper.js libjs-prettify libjs-sifter.js 234s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 234s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 234s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 234s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 234s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 234s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 234s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 234s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 234s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 234s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 234s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 234s r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter 234s r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 234s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 234s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 234s r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 234s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 234s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 234s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-limma 234s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 234s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 234s r-bioc-summarizedexperiment r-bioc-txdbmaker r-bioc-ucsc.utils 234s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 234s r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh 234s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 234s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron 234s r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 234s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 234s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest 234s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 234s r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr 234s r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options 234s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 234s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 234s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-hwriter 234s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 234s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 234s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 234s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 234s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 234s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 234s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises 234s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 234s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-restfulr 234s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 234s r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-scales r-cran-shiny 234s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 234s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 234s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 234s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 234s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 234s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 234s 0 upgraded, 328 newly installed, 0 to remove and 0 not upgraded. 234s Need to get 492 MB of archives. 234s After this operation, 1451 MB of additional disk space will be used. 234s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 235s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 235s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 246s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 246s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 246s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 246s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 246s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 246s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 246s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 249s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 250s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 253s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 255s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 257s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 260s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 284s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 284s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 284s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 284s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 287s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 299s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 299s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 299s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 299s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 299s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 299s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 300s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 301s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 301s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 301s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 301s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 301s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 301s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 306s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 308s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 309s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 309s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 320s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 320s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 320s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 320s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 320s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 320s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 320s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 320s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 320s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 321s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 321s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 329s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 329s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 330s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 330s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 330s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 330s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 330s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 330s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 330s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 330s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 330s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 330s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 331s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 331s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 331s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 341s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 342s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 342s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 342s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 342s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 342s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 342s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 342s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 342s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 343s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 343s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 343s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 343s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 343s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 343s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 343s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 343s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 344s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 344s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 344s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 344s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 344s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 346s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 350s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 350s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 350s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 350s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 350s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 351s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 351s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 351s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 351s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 351s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 351s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 351s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 351s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 351s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 351s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 352s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 352s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 353s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 353s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 353s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 353s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 354s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 354s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 354s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 354s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 355s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 355s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 355s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 355s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 355s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 355s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 356s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 356s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 356s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 356s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 356s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 356s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 357s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 357s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 357s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 357s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 357s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 357s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 382s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 382s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 382s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 382s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 382s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 382s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 382s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 406s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 406s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 406s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 406s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 406s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 406s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 406s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 407s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 409s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 411s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 413s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 413s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 414s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 414s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 416s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 417s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 417s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 417s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 418s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 418s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 418s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 418s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 418s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 418s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 418s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 418s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 419s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 419s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 420s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 420s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 420s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 420s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 420s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 420s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 421s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 421s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 421s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 421s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 421s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 433s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 436s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 437s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 447s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 447s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 451s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 455s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 457s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 457s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 457s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 457s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 457s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 457s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 457s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 457s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 458s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 458s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 460s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 460s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 460s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 461s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 461s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 462s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 462s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 463s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 465s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 465s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 465s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 465s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 465s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 466s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 466s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 466s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 466s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 467s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 467s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 467s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 467s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 467s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 467s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 468s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 469s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 469s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 469s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 469s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 470s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 476s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 476s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 476s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 476s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 476s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 476s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 477s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 481s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 485s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 485s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 485s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 485s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 485s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 485s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 486s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 486s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 486s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 487s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 487s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 490s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 492s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 493s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 493s Get:245 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 493s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 500s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 519s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 521s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 580s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 582s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 582s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 582s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 582s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr2 all 1.1.1-1 [752 kB] 582s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB] 582s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 582s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 584s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 584s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 585s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 585s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 588s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 592s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 592s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 592s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 592s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 592s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 592s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 592s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 600s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 600s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 600s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 600s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 604s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rpart arm64 4.1.24-1 [665 kB] 604s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nnet arm64 7.3-20-1 [113 kB] 604s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-foreign arm64 0.8.88-1 [243 kB] 606s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 606s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 607s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 607s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-checkmate arm64 2.3.2-1 [706 kB] 608s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 608s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 609s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltable all 2.4.3-1 [388 kB] 609s Get:284 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 611s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 611s Get:286 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-chron arm64 2.3-62-1 [188 kB] 611s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 611s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 612s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 613s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 614s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 616s Get:292 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-acepack arm64 1.6.1-1 [84.7 kB] 616s Get:293 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hmisc arm64 5.2-2-1 [3582 kB] 619s Get:294 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 619s Get:295 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 620s Get:296 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 620s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 620s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 621s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 622s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 623s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 624s Get:302 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 624s Get:303 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 625s Get:304 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 628s Get:305 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 629s Get:306 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 630s Get:307 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 630s Get:308 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 631s Get:309 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 635s Get:310 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 637s Get:311 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 647s Get:312 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 647s Get:313 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 647s Get:314 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 647s Get:315 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biovizbase arm64 1.54.0-2 [2857 kB] 648s Get:316 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 648s Get:317 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 649s Get:318 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-deseq2 arm64 1.46.0+dfsg-2 [1237 kB] 650s Get:319 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 651s Get:320 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 651s Get:321 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 652s Get:322 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB] 653s Get:323 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-dexseq all 1.52.0+dfsg-2 [453 kB] 653s Get:324 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 654s Get:325 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB] 655s Get:326 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 658s Get:327 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-txdbmaker all 1.2.1+ds-2 [875 kB] 658s Get:328 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 659s Preconfiguring packages ... 659s Fetched 492 MB in 7min 4s (1160 kB/s) 659s Selecting previously unselected package libisl23:arm64. 660s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 660s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 660s Unpacking libisl23:arm64 (0.27-1) ... 660s Selecting previously unselected package libmpc3:arm64. 660s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 660s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 660s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 660s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 660s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 660s Selecting previously unselected package cpp-14. 660s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 660s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 660s Selecting previously unselected package cpp-aarch64-linux-gnu. 660s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 660s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 660s Selecting previously unselected package cpp. 660s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 660s Unpacking cpp (4:14.2.0-1ubuntu1) ... 660s Selecting previously unselected package libcc1-0:arm64. 660s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 660s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 660s Selecting previously unselected package libgomp1:arm64. 660s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 660s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 660s Selecting previously unselected package libitm1:arm64. 660s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 660s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 660s Selecting previously unselected package libasan8:arm64. 661s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package liblsan0:arm64. 661s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libtsan2:arm64. 661s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libubsan1:arm64. 661s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libhwasan0:arm64. 661s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libgcc-14-dev:arm64. 661s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 661s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 661s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 661s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 661s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package gcc-14. 662s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package gcc-aarch64-linux-gnu. 662s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 662s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 662s Selecting previously unselected package gcc. 662s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 662s Unpacking gcc (4:14.2.0-1ubuntu1) ... 662s Selecting previously unselected package libstdc++-14-dev:arm64. 662s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package g++-14-aarch64-linux-gnu. 662s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package g++-14. 663s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking g++-14 (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package g++-aarch64-linux-gnu. 663s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 663s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 663s Selecting previously unselected package g++. 663s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 663s Unpacking g++ (4:14.2.0-1ubuntu1) ... 663s Selecting previously unselected package build-essential. 663s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 663s Unpacking build-essential (12.10ubuntu1) ... 663s Selecting previously unselected package dctrl-tools. 663s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 663s Unpacking dctrl-tools (2.24-3build3) ... 663s Selecting previously unselected package fonts-dejavu-mono. 663s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 663s Unpacking fonts-dejavu-mono (2.37-8) ... 663s Selecting previously unselected package fonts-dejavu-core. 665s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 665s Unpacking fonts-dejavu-core (2.37-8) ... 665s Selecting previously unselected package fontconfig-config. 665s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 665s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 665s Selecting previously unselected package libfontconfig1:arm64. 665s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 665s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 665s Selecting previously unselected package fontconfig. 665s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 665s Unpacking fontconfig (2.15.0-2ubuntu1) ... 665s Selecting previously unselected package fonts-font-awesome. 665s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 665s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 665s Selecting previously unselected package fonts-glyphicons-halflings. 665s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 665s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 665s Selecting previously unselected package fonts-lmodern. 665s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 665s Unpacking fonts-lmodern (2.005-1) ... 665s Selecting previously unselected package fonts-mathjax. 665s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 665s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 665s Selecting previously unselected package libgfortran5:arm64. 665s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 665s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 665s Selecting previously unselected package libgfortran-14-dev:arm64. 665s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 665s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 665s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 665s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 665s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 665s Selecting previously unselected package gfortran-14. 665s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 665s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 665s Selecting previously unselected package gfortran-aarch64-linux-gnu. 665s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 665s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 665s Selecting previously unselected package gfortran. 665s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 665s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 665s Selecting previously unselected package icu-devtools. 665s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 665s Unpacking icu-devtools (76.1-1ubuntu2) ... 665s Selecting previously unselected package javascript-common. 665s Preparing to unpack .../042-javascript-common_12_all.deb ... 665s Unpacking javascript-common (12) ... 665s Selecting previously unselected package libio-string-perl. 665s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 665s Unpacking libio-string-perl (1.08-4) ... 665s Selecting previously unselected package liblatex-tounicode-perl. 665s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 665s Unpacking liblatex-tounicode-perl (0.55-1) ... 665s Selecting previously unselected package libbibtex-parser-perl. 665s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 665s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 665s Selecting previously unselected package libblas3:arm64. 665s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 665s Unpacking libblas3:arm64 (3.12.1-2) ... 665s Selecting previously unselected package libblas-dev:arm64. 665s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 665s Unpacking libblas-dev:arm64 (3.12.1-2) ... 665s Selecting previously unselected package libboost1.83-dev:arm64. 665s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 665s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 668s Selecting previously unselected package libboost-dev:arm64. 668s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 668s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 668s Selecting previously unselected package libbz2-dev:arm64. 668s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 668s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 668s Selecting previously unselected package libpixman-1-0:arm64. 668s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 668s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 668s Selecting previously unselected package libxcb-render0:arm64. 668s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 668s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 668s Selecting previously unselected package libxcb-shm0:arm64. 668s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 668s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 668s Selecting previously unselected package libxrender1:arm64. 668s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 668s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 668s Selecting previously unselected package libcairo2:arm64. 668s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 668s Unpacking libcairo2:arm64 (1.18.2-2) ... 668s Selecting previously unselected package libdatrie1:arm64. 668s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 668s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 668s Selecting previously unselected package libdeflate0:arm64. 668s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 668s Unpacking libdeflate0:arm64 (1.23-1) ... 668s Selecting previously unselected package libdeflate-dev:arm64. 668s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 668s Unpacking libdeflate-dev:arm64 (1.23-1) ... 668s Selecting previously unselected package libgraphite2-3:arm64. 668s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 668s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 668s Selecting previously unselected package libharfbuzz0b:arm64. 668s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 668s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 668s Selecting previously unselected package x11-common. 669s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 669s Unpacking x11-common (1:7.7+23ubuntu3) ... 669s Selecting previously unselected package libice6:arm64. 669s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 669s Unpacking libice6:arm64 (2:1.1.1-1) ... 669s Selecting previously unselected package libicu-dev:arm64. 669s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 669s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 669s Selecting previously unselected package libjpeg-turbo8:arm64. 669s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 669s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 669s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 669s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 669s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 669s Selecting previously unselected package libjpeg8:arm64. 669s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 669s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 669s Selecting previously unselected package libjpeg8-dev:arm64. 669s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 669s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 669s Selecting previously unselected package libjpeg-dev:arm64. 669s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 669s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 669s Selecting previously unselected package libjs-bootstrap. 669s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 669s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 670s Selecting previously unselected package libjs-popper.js. 670s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 670s Unpacking libjs-popper.js (1.16.1+ds-6) ... 670s Selecting previously unselected package libjs-bootstrap4. 670s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 670s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 670s Selecting previously unselected package libjs-d3. 670s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 670s Unpacking libjs-d3 (3.5.17-4) ... 670s Selecting previously unselected package libjs-es5-shim. 670s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 670s Unpacking libjs-es5-shim (4.6.7-2) ... 670s Selecting previously unselected package libjs-highlight.js. 670s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 670s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 670s Selecting previously unselected package libjs-jquery. 670s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 670s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 670s Selecting previously unselected package libjs-jquery-datatables. 670s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 670s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 670s Selecting previously unselected package libjs-sifter.js. 670s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 670s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 670s Selecting previously unselected package libjs-microplugin.js. 670s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 670s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 672s Selecting previously unselected package libjs-jquery-selectize.js. 672s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 672s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 672s Selecting previously unselected package libjs-jquery-ui. 672s Preparing to unpack .../080-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 672s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 672s Selecting previously unselected package libjs-json. 672s Preparing to unpack .../081-libjs-json_0~20221030+~1.0.8-1_all.deb ... 672s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 672s Selecting previously unselected package libjs-lunr. 672s Preparing to unpack .../082-libjs-lunr_2.3.9~dfsg-2_all.deb ... 672s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 672s Selecting previously unselected package libjs-prettify. 672s Preparing to unpack .../083-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 672s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 672s Selecting previously unselected package libkpathsea6:arm64. 672s Preparing to unpack .../084-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 672s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 672s Selecting previously unselected package liblapack3:arm64. 672s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 672s Unpacking liblapack3:arm64 (3.12.1-2) ... 672s Selecting previously unselected package liblapack-dev:arm64. 672s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 672s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 672s Selecting previously unselected package liblerc4:arm64. 672s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 672s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 672s Selecting previously unselected package liblua5.4-0:arm64. 672s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 672s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 672s Selecting previously unselected package libmpfi0:arm64. 672s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 672s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 672s Selecting previously unselected package libncurses-dev:arm64. 672s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 672s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 672s Selecting previously unselected package libthai-data. 672s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 672s Unpacking libthai-data (0.1.29-2build1) ... 672s Selecting previously unselected package libthai0:arm64. 672s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 672s Unpacking libthai0:arm64 (0.1.29-2build1) ... 672s Selecting previously unselected package libpango-1.0-0:arm64. 672s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 672s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 672s Selecting previously unselected package libpangoft2-1.0-0:arm64. 672s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 677s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 677s Selecting previously unselected package libpangocairo-1.0-0:arm64. 677s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 677s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 677s Selecting previously unselected package libpaper2:arm64. 677s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 677s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 677s Selecting previously unselected package libpaper-utils. 677s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 677s Unpacking libpaper-utils (2.2.5-0.3) ... 677s Selecting previously unselected package libpcre2-16-0:arm64. 677s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 677s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 677s Selecting previously unselected package libpcre2-32-0:arm64. 677s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 677s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 677s Selecting previously unselected package libpcre2-posix3:arm64. 677s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 677s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 677s Selecting previously unselected package libpcre2-dev:arm64. 677s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 677s Unpacking libpcre2-dev:arm64 (10.45-1) ... 677s Selecting previously unselected package libpkgconf3:arm64. 677s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 677s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 677s Selecting previously unselected package zlib1g-dev:arm64. 677s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 677s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 677s Selecting previously unselected package libpng-dev:arm64. 677s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 677s Unpacking libpng-dev:arm64 (1.6.47-1) ... 677s Selecting previously unselected package libpotrace0:arm64. 677s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 677s Unpacking libpotrace0:arm64 (1.16-2build1) ... 677s Selecting previously unselected package libptexenc1:arm64. 677s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 677s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 677s Selecting previously unselected package libreadline-dev:arm64. 677s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 677s Unpacking libreadline-dev:arm64 (8.2-6) ... 677s Selecting previously unselected package libsharpyuv0:arm64. 677s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 677s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 677s Selecting previously unselected package libsm6:arm64. 677s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 677s Unpacking libsm6:arm64 (2:1.2.4-1) ... 677s Selecting previously unselected package libsynctex2:arm64. 677s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 677s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 677s Selecting previously unselected package libtcl8.6:arm64. 677s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 677s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 677s Selecting previously unselected package libteckit0:arm64. 677s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 677s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 677s Selecting previously unselected package libtexlua53-5:arm64. 677s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 677s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 677s Selecting previously unselected package libjbig0:arm64. 677s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 677s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 677s Selecting previously unselected package libwebp7:arm64. 677s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 677s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 677s Selecting previously unselected package libtiff6:arm64. 677s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 677s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 677s Selecting previously unselected package libxft2:arm64. 677s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 677s Unpacking libxft2:arm64 (2.3.6-1build1) ... 677s Selecting previously unselected package libxss1:arm64. 677s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 677s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 677s Selecting previously unselected package libtk8.6:arm64. 677s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 677s Unpacking libtk8.6:arm64 (8.6.16-1) ... 677s Selecting previously unselected package libxt6t64:arm64. 677s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 677s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 677s Selecting previously unselected package libxmu6:arm64. 677s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 677s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 677s Selecting previously unselected package libxpm4:arm64. 677s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 677s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 677s Selecting previously unselected package libxaw7:arm64. 677s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 677s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 677s Selecting previously unselected package libxi6:arm64. 677s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 677s Unpacking libxi6:arm64 (2:1.8.2-1) ... 677s Selecting previously unselected package libzzip-0-13t64:arm64. 677s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 677s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 677s Selecting previously unselected package zip. 677s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 677s Unpacking zip (3.0-14ubuntu2) ... 677s Selecting previously unselected package unzip. 677s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 677s Unpacking unzip (6.0-28ubuntu6) ... 677s Selecting previously unselected package xdg-utils. 677s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 677s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 677s Selecting previously unselected package r-base-core. 677s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 677s Unpacking r-base-core (4.4.3-1) ... 677s Selecting previously unselected package r-cran-littler. 677s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 677s Unpacking r-cran-littler (0.3.20-2) ... 677s Selecting previously unselected package littler. 677s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 677s Unpacking littler (0.3.20-2) ... 677s Selecting previously unselected package node-bootstrap-sass. 677s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 677s Unpacking node-bootstrap-sass (3.4.3-2) ... 677s Selecting previously unselected package node-html5shiv. 677s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 677s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 677s Selecting previously unselected package node-normalize.css. 677s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 677s Unpacking node-normalize.css (8.0.1-5) ... 677s Selecting previously unselected package pandoc-data. 677s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 677s Unpacking pandoc-data (3.1.11.1-3build1) ... 677s Selecting previously unselected package pandoc. 677s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 677s Unpacking pandoc (3.1.11.1+ds-2) ... 677s Selecting previously unselected package liblzma-dev:arm64. 677s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 677s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 677s Selecting previously unselected package pkgconf-bin. 677s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 677s Unpacking pkgconf-bin (1.8.1-4) ... 677s Selecting previously unselected package pkgconf:arm64. 677s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 677s Unpacking pkgconf:arm64 (1.8.1-4) ... 678s Selecting previously unselected package libtirpc-dev:arm64. 678s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 678s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 678s Selecting previously unselected package r-base-dev. 678s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 678s Unpacking r-base-dev (4.4.3-1) ... 678s Selecting previously unselected package pkg-r-autopkgtest. 678s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 678s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 678s Selecting previously unselected package r-bioc-biocgenerics. 678s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 678s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 678s Selecting previously unselected package r-bioc-biobase. 678s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 678s Unpacking r-bioc-biobase (2.66.0-2) ... 678s Selecting previously unselected package r-bioc-s4vectors. 678s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 678s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 678s Selecting previously unselected package r-bioc-iranges. 678s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_arm64.deb ... 678s Unpacking r-bioc-iranges (2.40.1-2) ... 678s Selecting previously unselected package r-cran-dbi. 678s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 678s Unpacking r-cran-dbi (1.2.3-1) ... 678s Selecting previously unselected package r-cran-bit. 678s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 678s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 678s Selecting previously unselected package r-cran-bit64. 678s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 678s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 678s Selecting previously unselected package r-cran-rlang. 678s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_arm64.deb ... 678s Unpacking r-cran-rlang (1.1.5-1) ... 678s Selecting previously unselected package r-cran-cli. 678s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 678s Unpacking r-cran-cli (3.6.4-1) ... 679s Selecting previously unselected package r-cran-glue. 679s Preparing to unpack .../152-r-cran-glue_1.8.0-1_arm64.deb ... 679s Unpacking r-cran-glue (1.8.0-1) ... 679s Selecting previously unselected package r-cran-lifecycle. 679s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 679s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 679s Selecting previously unselected package r-cran-vctrs. 679s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 679s Unpacking r-cran-vctrs (0.6.5-1) ... 679s Selecting previously unselected package r-cran-blob. 679s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 679s Unpacking r-cran-blob (1.2.4-1) ... 679s Selecting previously unselected package r-cran-fastmap. 679s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ... 679s Unpacking r-cran-fastmap (1.2.0-1) ... 679s Selecting previously unselected package r-cran-cachem. 679s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ... 679s Unpacking r-cran-cachem (1.1.0-1) ... 679s Selecting previously unselected package r-cran-memoise. 679s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 679s Unpacking r-cran-memoise (2.0.1-1) ... 679s Selecting previously unselected package r-cran-pkgconfig. 679s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 679s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 679s Selecting previously unselected package r-cran-plogr. 679s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 679s Unpacking r-cran-plogr (0.2.0-3build1) ... 679s Selecting previously unselected package r-cran-cpp11. 679s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 679s Unpacking r-cran-cpp11 (0.5.2-1) ... 679s Selecting previously unselected package r-cran-rsqlite. 679s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ... 679s Unpacking r-cran-rsqlite (2.3.9-1) ... 679s Selecting previously unselected package r-cran-curl. 679s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 679s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 679s Selecting previously unselected package r-cran-jsonlite. 679s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 679s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 679s Selecting previously unselected package r-cran-mime. 679s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ... 679s Unpacking r-cran-mime (0.12-2) ... 680s Selecting previously unselected package r-cran-sys. 680s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ... 680s Unpacking r-cran-sys (3.4.3-1) ... 680s Selecting previously unselected package r-cran-askpass. 680s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ... 680s Unpacking r-cran-askpass (1.2.1-1) ... 680s Selecting previously unselected package r-cran-openssl. 680s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 680s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 680s Selecting previously unselected package r-cran-r6. 680s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 680s Unpacking r-cran-r6 (2.6.1-1) ... 680s Selecting previously unselected package r-cran-httr. 680s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 680s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 680s Selecting previously unselected package r-cran-png. 680s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ... 680s Unpacking r-cran-png (0.1-8-1build2) ... 680s Selecting previously unselected package r-bioc-zlibbioc. 680s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 680s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 680s Selecting previously unselected package r-bioc-xvector. 680s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 680s Unpacking r-bioc-xvector (0.46.0-2) ... 680s Selecting previously unselected package r-bioc-ucsc.utils. 680s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 680s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 680s Selecting previously unselected package r-bioc-genomeinfodbdata. 680s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 680s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 680s Selecting previously unselected package r-bioc-genomeinfodb. 680s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 680s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 680s Selecting previously unselected package r-cran-crayon. 680s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 680s Unpacking r-cran-crayon (1.5.3-1) ... 680s Selecting previously unselected package r-bioc-biostrings. 680s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 680s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 691s Selecting previously unselected package r-bioc-keggrest. 692s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 692s Selecting previously unselected package r-bioc-annotationdbi. 692s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 692s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 692s Selecting previously unselected package r-cran-xml. 692s Preparing to unpack .../181-r-cran-xml_3.99-0.18-1_arm64.deb ... 692s Unpacking r-cran-xml (3.99-0.18-1) ... 692s Selecting previously unselected package r-cran-xtable. 692s Preparing to unpack .../182-r-cran-xtable_1%3a1.8-4-2_all.deb ... 692s Unpacking r-cran-xtable (1:1.8-4-2) ... 692s Selecting previously unselected package r-bioc-annotate. 692s Preparing to unpack .../183-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 692s Selecting previously unselected package r-bioc-genomicranges. 692s Preparing to unpack .../184-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 692s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 692s Selecting previously unselected package r-cran-lazyeval. 692s Preparing to unpack .../185-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 692s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 692s Selecting previously unselected package r-bioc-annotationfilter. 692s Preparing to unpack .../186-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 692s Selecting previously unselected package r-cran-generics. 692s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 692s Unpacking r-cran-generics (0.1.3-1) ... 692s Selecting previously unselected package r-cran-magrittr. 692s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 692s Unpacking r-cran-magrittr (2.0.3-1) ... 692s Selecting previously unselected package r-cran-utf8. 692s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_arm64.deb ... 692s Unpacking r-cran-utf8 (1.2.4-1) ... 692s Selecting previously unselected package r-cran-pillar. 692s Preparing to unpack .../190-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 692s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 692s Selecting previously unselected package r-cran-fansi. 692s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 692s Unpacking r-cran-fansi (1.0.5-1) ... 692s Selecting previously unselected package r-cran-tibble. 692s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 692s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 692s Selecting previously unselected package r-cran-withr. 692s Preparing to unpack .../193-r-cran-withr_3.0.2+dfsg-1_all.deb ... 692s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 692s Selecting previously unselected package r-cran-tidyselect. 692s Preparing to unpack .../194-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 692s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 692s Selecting previously unselected package r-cran-dplyr. 692s Preparing to unpack .../195-r-cran-dplyr_1.1.4-4_arm64.deb ... 692s Unpacking r-cran-dplyr (1.1.4-4) ... 692s Selecting previously unselected package r-cran-purrr. 692s Preparing to unpack .../196-r-cran-purrr_1.0.4-1_arm64.deb ... 692s Unpacking r-cran-purrr (1.0.4-1) ... 692s Selecting previously unselected package r-cran-stringi. 692s Preparing to unpack .../197-r-cran-stringi_1.8.4-1build1_arm64.deb ... 692s Unpacking r-cran-stringi (1.8.4-1build1) ... 692s Selecting previously unselected package r-cran-stringr. 692s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 692s Unpacking r-cran-stringr (1.5.1-1) ... 692s Selecting previously unselected package r-cran-tidyr. 692s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 692s Unpacking r-cran-tidyr (1.3.1-1) ... 692s Selecting previously unselected package r-cran-dbplyr. 692s Preparing to unpack .../200-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 692s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 692s Selecting previously unselected package r-cran-filelock. 692s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 692s Unpacking r-cran-filelock (1.0.3-1) ... 692s Selecting previously unselected package r-bioc-biocfilecache. 692s Preparing to unpack .../202-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 692s Selecting previously unselected package r-cran-biocmanager. 692s Preparing to unpack .../203-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 692s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 692s Selecting previously unselected package r-bioc-biocversion. 692s Preparing to unpack .../204-r-bioc-biocversion_3.20.0-2_all.deb ... 692s Unpacking r-bioc-biocversion (3.20.0-2) ... 692s Selecting previously unselected package r-cran-rappdirs. 692s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_arm64.deb ... 692s Unpacking r-cran-rappdirs (0.3.3-1) ... 692s Selecting previously unselected package r-cran-yaml. 692s Preparing to unpack .../206-r-cran-yaml_2.3.10-1_arm64.deb ... 692s Unpacking r-cran-yaml (2.3.10-1) ... 692s Selecting previously unselected package r-bioc-annotationhub. 692s Preparing to unpack .../207-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 692s Selecting previously unselected package r-bioc-biocio. 692s Preparing to unpack .../208-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 692s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 692s Selecting previously unselected package r-cran-formatr. 692s Preparing to unpack .../209-r-cran-formatr_1.14-2_all.deb ... 692s Unpacking r-cran-formatr (1.14-2) ... 692s Selecting previously unselected package r-cran-lambda.r. 692s Preparing to unpack .../210-r-cran-lambda.r_1.2.4-2build1_all.deb ... 692s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 692s Selecting previously unselected package r-cran-futile.options. 692s Preparing to unpack .../211-r-cran-futile.options_1.0.1-3build1_all.deb ... 692s Unpacking r-cran-futile.options (1.0.1-3build1) ... 692s Selecting previously unselected package r-cran-futile.logger. 692s Preparing to unpack .../212-r-cran-futile.logger_1.4.3-4build1_all.deb ... 692s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 692s Selecting previously unselected package r-cran-snow. 692s Preparing to unpack .../213-r-cran-snow_1%3a0.4.4-2_all.deb ... 692s Unpacking r-cran-snow (1:0.4.4-2) ... 692s Selecting previously unselected package r-cran-codetools. 692s Preparing to unpack .../214-r-cran-codetools_0.2-20-1_all.deb ... 692s Unpacking r-cran-codetools (0.2-20-1) ... 692s Selecting previously unselected package r-cran-bh. 692s Preparing to unpack .../215-r-cran-bh_1.84.0-1_all.deb ... 692s Unpacking r-cran-bh (1.84.0-1) ... 692s Selecting previously unselected package r-bioc-biocparallel. 692s Preparing to unpack .../216-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 692s Unpacking r-bioc-biocparallel (1.40.0-2) ... 692s Selecting previously unselected package r-cran-base64enc. 692s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3_arm64.deb ... 692s Unpacking r-cran-base64enc (0.1-3-3) ... 692s Selecting previously unselected package r-cran-digest. 692s Preparing to unpack .../218-r-cran-digest_0.6.37-1_arm64.deb ... 692s Unpacking r-cran-digest (0.6.37-1) ... 692s Selecting previously unselected package r-cran-htmltools. 692s Preparing to unpack .../219-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 692s Unpacking r-cran-htmltools (0.5.8.1-1) ... 692s Selecting previously unselected package r-cran-evaluate. 692s Preparing to unpack .../220-r-cran-evaluate_1.0.3-1_all.deb ... 692s Unpacking r-cran-evaluate (1.0.3-1) ... 692s Selecting previously unselected package r-cran-xfun. 692s Preparing to unpack .../221-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 692s Unpacking r-cran-xfun (0.51+dfsg-1) ... 692s Selecting previously unselected package r-cran-highr. 692s Preparing to unpack .../222-r-cran-highr_0.11+dfsg-1_all.deb ... 692s Unpacking r-cran-highr (0.11+dfsg-1) ... 692s Selecting previously unselected package libjs-mathjax. 692s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 692s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 692s Selecting previously unselected package r-cran-knitr. 692s Preparing to unpack .../224-r-cran-knitr_1.49+dfsg-1_all.deb ... 692s Unpacking r-cran-knitr (1.49+dfsg-1) ... 692s Selecting previously unselected package r-cran-jquerylib. 692s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 692s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 692s Selecting previously unselected package r-cran-fs. 692s Preparing to unpack .../226-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 692s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 692s Selecting previously unselected package r-cran-sass. 692s Preparing to unpack .../227-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 692s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 692s Selecting previously unselected package r-cran-bslib. 692s Preparing to unpack .../228-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 692s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 692s Selecting previously unselected package r-cran-fontawesome. 692s Preparing to unpack .../229-r-cran-fontawesome_0.5.3-1_all.deb ... 692s Unpacking r-cran-fontawesome (0.5.3-1) ... 692s Selecting previously unselected package r-cran-tinytex. 692s Preparing to unpack .../230-r-cran-tinytex_0.56-1_all.deb ... 692s Unpacking r-cran-tinytex (0.56-1) ... 692s Selecting previously unselected package libjs-modernizr. 692s Preparing to unpack .../231-libjs-modernizr_3.13.0-0.1_all.deb ... 692s Unpacking libjs-modernizr (3.13.0-0.1) ... 692s Selecting previously unselected package r-cran-pkgkitten. 692s Preparing to unpack .../232-r-cran-pkgkitten_0.2.4-1_all.deb ... 692s Unpacking r-cran-pkgkitten (0.2.4-1) ... 692s Selecting previously unselected package r-cran-rcpp. 692s Preparing to unpack .../233-r-cran-rcpp_1.0.14-1_arm64.deb ... 692s Unpacking r-cran-rcpp (1.0.14-1) ... 692s Selecting previously unselected package r-cran-later. 692s Preparing to unpack .../234-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 692s Unpacking r-cran-later (1.4.1+dfsg-1) ... 692s Selecting previously unselected package r-cran-promises. 692s Preparing to unpack .../235-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 692s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 692s Selecting previously unselected package r-cran-httpuv. 692s Preparing to unpack .../236-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 692s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 692s Selecting previously unselected package r-cran-sourcetools. 692s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 692s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 692s Selecting previously unselected package r-cran-commonmark. 692s Preparing to unpack .../238-r-cran-commonmark_1.9.2-2_arm64.deb ... 692s Unpacking r-cran-commonmark (1.9.2-2) ... 692s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 692s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 692s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 692s Selecting previously unselected package r-cran-shiny. 692s Preparing to unpack .../240-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 692s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 692s Selecting previously unselected package r-cran-rmarkdown. 692s Preparing to unpack .../241-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 692s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 692s Selecting previously unselected package r-cran-bookdown. 692s Preparing to unpack .../242-r-cran-bookdown_0.42+dfsg-1_all.deb ... 692s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 692s Selecting previously unselected package tex-common. 692s Preparing to unpack .../243-tex-common_6.19_all.deb ... 692s Unpacking tex-common (6.19) ... 692s Selecting previously unselected package t1utils. 692s Preparing to unpack .../244-t1utils_1.41-4build3_arm64.deb ... 692s Unpacking t1utils (1.41-4build3) ... 692s Selecting previously unselected package texlive-binaries. 692s Preparing to unpack .../245-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 692s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 692s Selecting previously unselected package texlive-base. 692s Preparing to unpack .../246-texlive-base_2024.20250114-1_all.deb ... 692s Unpacking texlive-base (2024.20250114-1) ... 692s Selecting previously unselected package texlive-latex-base. 692s Preparing to unpack .../247-texlive-latex-base_2024.20250114-1_all.deb ... 692s Unpacking texlive-latex-base (2024.20250114-1) ... 692s Selecting previously unselected package texlive-bibtex-extra. 692s Preparing to unpack .../248-texlive-bibtex-extra_2024.20250114-1_all.deb ... 692s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 692s Selecting previously unselected package r-bioc-biocstyle. 692s Preparing to unpack .../249-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 692s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 692s Selecting previously unselected package r-cran-hms. 692s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 692s Unpacking r-cran-hms (1.1.3-1) ... 692s Selecting previously unselected package r-cran-prettyunits. 692s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 692s Unpacking r-cran-prettyunits (1.2.0-1) ... 692s Selecting previously unselected package r-cran-progress. 692s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 692s Unpacking r-cran-progress (1.2.3-1) ... 692s Selecting previously unselected package r-cran-httr2. 692s Preparing to unpack .../253-r-cran-httr2_1.1.1-1_all.deb ... 692s Unpacking r-cran-httr2 (1.1.1-1) ... 692s Selecting previously unselected package r-cran-xml2. 692s Preparing to unpack .../254-r-cran-xml2_1.3.7-1_arm64.deb ... 692s Unpacking r-cran-xml2 (1.3.7-1) ... 692s Selecting previously unselected package r-bioc-biomart. 692s Preparing to unpack .../255-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 692s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 692s Selecting previously unselected package r-cran-farver. 692s Preparing to unpack .../256-r-cran-farver_2.1.2-1_arm64.deb ... 692s Unpacking r-cran-farver (2.1.2-1) ... 692s Selecting previously unselected package r-cran-labeling. 692s Preparing to unpack .../257-r-cran-labeling_0.4.3-1_all.deb ... 692s Unpacking r-cran-labeling (0.4.3-1) ... 692s Selecting previously unselected package r-cran-colorspace. 692s Preparing to unpack .../258-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 692s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 692s Selecting previously unselected package r-cran-munsell. 692s Preparing to unpack .../259-r-cran-munsell_0.5.1-1_all.deb ... 692s Unpacking r-cran-munsell (0.5.1-1) ... 692s Selecting previously unselected package r-cran-rcolorbrewer. 692s Preparing to unpack .../260-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 692s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 692s Selecting previously unselected package r-cran-viridislite. 692s Preparing to unpack .../261-r-cran-viridislite_0.4.2-2_all.deb ... 692s Unpacking r-cran-viridislite (0.4.2-2) ... 692s Selecting previously unselected package r-cran-scales. 692s Preparing to unpack .../262-r-cran-scales_1.3.0-1_all.deb ... 692s Unpacking r-cran-scales (1.3.0-1) ... 692s Selecting previously unselected package r-cran-gtable. 692s Preparing to unpack .../263-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 692s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 692s Selecting previously unselected package r-cran-isoband. 692s Preparing to unpack .../264-r-cran-isoband_0.2.7-1_arm64.deb ... 692s Unpacking r-cran-isoband (0.2.7-1) ... 692s Selecting previously unselected package r-cran-mass. 692s Preparing to unpack .../265-r-cran-mass_7.3-64-1_arm64.deb ... 692s Unpacking r-cran-mass (7.3-64-1) ... 692s Selecting previously unselected package r-cran-lattice. 692s Preparing to unpack .../266-r-cran-lattice_0.22-6-1_arm64.deb ... 692s Unpacking r-cran-lattice (0.22-6-1) ... 692s Selecting previously unselected package r-cran-nlme. 692s Preparing to unpack .../267-r-cran-nlme_3.1.167-1_arm64.deb ... 692s Unpacking r-cran-nlme (3.1.167-1) ... 692s Selecting previously unselected package r-cran-matrix. 692s Preparing to unpack .../268-r-cran-matrix_1.7-3-1_arm64.deb ... 692s Unpacking r-cran-matrix (1.7-3-1) ... 692s Selecting previously unselected package r-cran-mgcv. 692s Preparing to unpack .../269-r-cran-mgcv_1.9-1-1_arm64.deb ... 692s Unpacking r-cran-mgcv (1.9-1-1) ... 692s Selecting previously unselected package r-cran-ggplot2. 692s Preparing to unpack .../270-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 692s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 692s Selecting previously unselected package r-cran-cluster. 692s Preparing to unpack .../271-r-cran-cluster_2.1.8-1_arm64.deb ... 692s Unpacking r-cran-cluster (2.1.8-1) ... 692s Selecting previously unselected package r-cran-survival. 692s Preparing to unpack .../272-r-cran-survival_3.8-3-1_arm64.deb ... 692s Unpacking r-cran-survival (3.8-3-1) ... 692s Selecting previously unselected package r-cran-rpart. 692s Preparing to unpack .../273-r-cran-rpart_4.1.24-1_arm64.deb ... 692s Unpacking r-cran-rpart (4.1.24-1) ... 692s Selecting previously unselected package r-cran-nnet. 692s Preparing to unpack .../274-r-cran-nnet_7.3-20-1_arm64.deb ... 692s Unpacking r-cran-nnet (7.3-20-1) ... 692s Selecting previously unselected package r-cran-foreign. 692s Preparing to unpack .../275-r-cran-foreign_0.8.88-1_arm64.deb ... 692s Unpacking r-cran-foreign (0.8.88-1) ... 692s Selecting previously unselected package r-cran-gridextra. 692s Preparing to unpack .../276-r-cran-gridextra_2.3-3build1_all.deb ... 692s Unpacking r-cran-gridextra (2.3-3build1) ... 692s Selecting previously unselected package r-cran-data.table. 692s Preparing to unpack .../277-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 692s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 692s Selecting previously unselected package r-cran-backports. 692s Preparing to unpack .../278-r-cran-backports_1.5.0-2_arm64.deb ... 692s Unpacking r-cran-backports (1.5.0-2) ... 692s Selecting previously unselected package r-cran-checkmate. 692s Preparing to unpack .../279-r-cran-checkmate_2.3.2-1_arm64.deb ... 692s Unpacking r-cran-checkmate (2.3.2-1) ... 692s Selecting previously unselected package r-cran-htmlwidgets. 692s Preparing to unpack .../280-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 692s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 692s Selecting previously unselected package r-cran-rstudioapi. 693s Preparing to unpack .../281-r-cran-rstudioapi_0.17.1-1_all.deb ... 693s Unpacking r-cran-rstudioapi (0.17.1-1) ... 693s Selecting previously unselected package r-cran-htmltable. 693s Preparing to unpack .../282-r-cran-htmltable_2.4.3-1_all.deb ... 693s Unpacking r-cran-htmltable (2.4.3-1) ... 693s Selecting previously unselected package r-cran-viridis. 693s Preparing to unpack .../283-r-cran-viridis_0.6.5-1_all.deb ... 693s Unpacking r-cran-viridis (0.6.5-1) ... 693s Selecting previously unselected package r-cran-formula. 693s Preparing to unpack .../284-r-cran-formula_1.2-5-1_all.deb ... 693s Unpacking r-cran-formula (1.2-5-1) ... 693s Selecting previously unselected package r-cran-chron. 693s Preparing to unpack .../285-r-cran-chron_2.3-62-1_arm64.deb ... 693s Unpacking r-cran-chron (2.3-62-1) ... 693s Selecting previously unselected package r-cran-jpeg. 693s Preparing to unpack .../286-r-cran-jpeg_0.1-10-1_arm64.deb ... 693s Unpacking r-cran-jpeg (0.1-10-1) ... 693s Selecting previously unselected package r-cran-deldir. 693s Preparing to unpack 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Selecting previously unselected package r-cran-dichromat. 693s Preparing to unpack .../293-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 693s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 694s Selecting previously unselected package r-cran-matrixstats. 694s Preparing to unpack .../294-r-cran-matrixstats_1.5.0-1_arm64.deb ... 694s Unpacking r-cran-matrixstats (1.5.0-1) ... 694s Selecting previously unselected package r-bioc-matrixgenerics. 694s Preparing to unpack .../295-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 694s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 694s Selecting previously unselected package r-cran-abind. 694s Preparing to unpack .../296-r-cran-abind_1.4-8-1_all.deb ... 694s Unpacking r-cran-abind (1.4-8-1) ... 694s Selecting previously unselected package r-bioc-s4arrays. 694s Preparing to unpack .../297-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 694s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 694s Selecting previously unselected package r-bioc-sparsearray. 694s 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Unpacking r-bioc-rtracklayer (1.66.0-2) ... 695s Selecting previously unselected package r-bioc-genomicfeatures. 695s Preparing to unpack .../309-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 695s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 695s Selecting previously unselected package r-bioc-bsgenome. 695s Preparing to unpack .../310-r-bioc-bsgenome_1.74.0-2_all.deb ... 695s Unpacking r-bioc-bsgenome (1.74.0-2) ... 695s Selecting previously unselected package r-bioc-variantannotation. 695s Preparing to unpack .../311-r-bioc-variantannotation_1.52.0-2_arm64.deb ... 695s Unpacking r-bioc-variantannotation (1.52.0-2) ... 695s Selecting previously unselected package r-bioc-protgenerics. 695s Preparing to unpack .../312-r-bioc-protgenerics_1.38.0-2_all.deb ... 695s Unpacking r-bioc-protgenerics (1.38.0-2) ... 695s Selecting previously unselected package r-bioc-ensembldb. 695s Preparing to unpack .../313-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 695s Unpacking r-bioc-ensembldb 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This may take some time... done. 705s Running mktexlsr /var/lib/texmf ... done. 705s Building format(s) --all. 743s This may take some time... done. 887s autopkgtest [15:21:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 887s autopkgtest [15:21:45]: test pkg-r-autopkgtest: [----------------------- 889s Test: Try to load the R library GenomicRanges 889s 889s R version 4.4.3 (2025-02-28) -- "Trophy Case" 889s Copyright (C) 2025 The R Foundation for Statistical Computing 889s Platform: aarch64-unknown-linux-gnu 889s 889s R is free software and comes with ABSOLUTELY NO WARRANTY. 889s You are welcome to redistribute it under certain conditions. 889s Type 'license()' or 'licence()' for distribution details. 889s 889s R is a collaborative project with many contributors. 889s Type 'contributors()' for more information and 889s 'citation()' on how to cite R or R packages in publications. 889s 889s Type 'demo()' for some demos, 'help()' for on-line help, or 889s 'help.start()' for an HTML browser interface to help. 889s Type 'q()' to quit R. 889s 889s > library('GenomicRanges') 889s Loading required package: stats4 889s Loading required package: BiocGenerics 890s 890s Attaching package: ‘BiocGenerics’ 890s 890s The following objects are masked from ‘package:stats’: 890s 890s IQR, mad, sd, var, xtabs 890s 890s The following objects are masked from ‘package:base’: 890s 890s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 890s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 890s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 890s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 890s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 890s table, tapply, union, unique, unsplit, which.max, which.min 890s 890s Loading required package: S4Vectors 890s 890s Attaching package: ‘S4Vectors’ 890s 890s The following object is masked from ‘package:utils’: 890s 890s findMatches 890s 890s The following objects are masked from ‘package:base’: 890s 890s expand.grid, I, unname 890s 890s Loading required package: IRanges 891s Loading required package: GenomeInfoDb 891s > 891s > 891s Other tests are currently unsupported! 891s They will be progressively added. 892s autopkgtest [15:21:50]: test pkg-r-autopkgtest: -----------------------] 900s autopkgtest [15:21:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 900s pkg-r-autopkgtest PASS 959s autopkgtest [15:22:57]: @@@@@@@@@@@@@@@@@@@@ summary 959s pkg-r-autopkgtest PASS 1009s nova [W] Using flock in prodstack6-arm64 1009s Creating nova instance adt-plucky-arm64-r-bioc-genomicranges-20250315-150658-juju-7f2275-prod-proposed-migration-environment-15-858fff2d-b0a8-461a-a696-48253113a874 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1009s nova [W] Timed out waiting for aa6a0411-ad36-413c-8477-effd5704a86e to get deleted.