0s autopkgtest [15:06:55]: starting date and time: 2025-03-15 15:06:55+0000 0s autopkgtest [15:06:55]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:06:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jqwzuz92/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-18.secgroup --name adt-plucky-arm64-r-bioc-genomicalignments-20250315-150655-juju-7f2275-prod-proposed-migration-environment-2-684f187d-66d1-4cb5-8b3e-af4b4ea8a02c --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 171s autopkgtest [15:09:46]: testbed dpkg architecture: arm64 171s autopkgtest [15:09:46]: testbed apt version: 2.9.33 171s autopkgtest [15:09:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 172s autopkgtest [15:09:47]: testbed release detected to be: None 172s autopkgtest [15:09:47]: updating testbed package index (apt update) 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 173s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 173s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 173s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 173s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 173s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 174s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 174s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 174s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 174s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 174s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 174s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 174s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 174s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 174s Fetched 1094 kB in 2s (671 kB/s) 175s Reading package lists... 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 177s Calculating upgrade... 177s Calculating upgrade... 177s The following packages will be upgraded: 177s python3-jinja2 strace 178s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 608 kB of archives. 178s After this operation, 11.3 kB of additional disk space will be used. 178s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 178s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 179s Fetched 608 kB in 1s (567 kB/s) 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 180s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 180s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 180s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 180s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 180s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 180s Setting up strace (6.13+ds-1ubuntu1) ... 180s Processing triggers for man-db (2.13.0-1) ... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Solving dependencies... 182s The following packages will be REMOVED: 182s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 182s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 182s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 182s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 183s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 183s After this operation, 267 MB disk space will be freed. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 183s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 183s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 183s Removing libpython3.12t64:arm64 (3.12.9-1) ... 183s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 183s Removing libnsl2:arm64 (1.3.0-3build3) ... 183s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 183s Removing libunwind8:arm64 (1.6.2-3.1) ... 183s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 184s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 186s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 186s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 186s /etc/kernel/postrm.d/initramfs-tools: 186s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 186s /etc/kernel/postrm.d/zz-flash-kernel: 186s flash-kernel: Kernel 6.11.0-8-generic has been removed. 186s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 186s /etc/kernel/postrm.d/zz-update-grub: 186s Sourcing file `/etc/default/grub' 186s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 186s Generating grub configuration file ... 187s Found linux image: /boot/vmlinuz-6.14.0-10-generic 187s Found initrd image: /boot/initrd.img-6.14.0-10-generic 187s Warning: os-prober will not be executed to detect other bootable partitions. 187s Systems on them will not be added to the GRUB boot configuration. 187s Check GRUB_DISABLE_OS_PROBER documentation entry. 187s Adding boot menu entry for UEFI Firmware Settings ... 187s done 187s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s Processing triggers for libc-bin (2.41-1ubuntu1) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 188s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 188s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 188s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s autopkgtest [15:10:03]: upgrading testbed (apt dist-upgrade and autopurge) 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 190s Starting 2 pkgProblemResolver with broken count: 0 190s Done 192s Entering ResolveByKeep 192s 192s Calculating upgrade... 192s The following packages will be upgraded: 192s libc-bin libc-dev-bin libc6 libc6-dev locales 193s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s Need to get 9530 kB of archives. 193s After this operation, 0 B of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 198s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 199s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 204s Preconfiguring packages ... 204s Fetched 9530 kB in 11s (872 kB/s) 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 204s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc6:arm64 (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc-bin (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 205s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up locales (2.41-1ubuntu2) ... 206s Generating locales (this might take a while)... 209s en_US.UTF-8... done 209s Generation complete. 209s Setting up libc-dev-bin (2.41-1ubuntu2) ... 209s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 209s Processing triggers for man-db (2.13.0-1) ... 210s Processing triggers for systemd (257.3-1ubuntu3) ... 210s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Starting pkgProblemResolver with broken count: 0 211s Starting 2 pkgProblemResolver with broken count: 0 211s Done 212s Solving dependencies... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 212s autopkgtest [15:10:27]: rebooting testbed after setup commands that affected boot 236s autopkgtest [15:10:51]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 239s autopkgtest [15:10:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 243s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (dsc) [2451 B] 243s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (tar) [2273 kB] 243s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (diff) [7800 B] 243s gpgv: Signature made Mon Jan 13 08:01:02 2025 UTC 243s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 243s gpgv: issuer "crusoe@debian.org" 243s gpgv: Can't check signature: No public key 243s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.42.0-2.dsc: no acceptable signature found 243s autopkgtest [15:10:58]: testing package r-bioc-genomicalignments version 1.42.0-2 244s autopkgtest [15:10:59]: build not needed 246s autopkgtest [15:11:01]: test pkg-r-autopkgtest: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following NEW packages will be installed: 248s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 248s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 248s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 248s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 248s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 248s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 248s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 248s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 248s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 248s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 248s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 248s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 248s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 248s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 248s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 248s libjs-popper.js libjs-prettify libjs-sifter.js 248s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 248s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 248s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 248s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 248s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 248s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 248s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 248s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 248s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 248s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 248s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 248s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 248s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 248s r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger 248s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 248s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 248s r-bioc-limma r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib 248s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 248s r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment 248s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 248s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 248s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 248s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 248s r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-digest 248s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 248s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 248s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools 248s r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband 248s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 248s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 248s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 248s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 248s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 248s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-r6 248s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 248s r-cran-rcppeigen r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 248s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-scales 248s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-sys 248s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 248s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 248s tex-common texlive-base texlive-bibtex-extra texlive-binaries 248s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 248s 0 upgraded, 283 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 448 MB of archives. 248s After this operation, 1384 MB of additional disk space will be used. 248s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 261s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 261s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 261s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 261s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 261s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 261s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 261s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 264s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 265s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 268s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 270s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 272s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 274s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 298s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 299s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 299s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 299s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 301s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 312s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 312s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 312s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 312s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 312s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 312s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 313s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 314s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 314s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 314s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 314s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 314s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 315s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 320s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 321s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 322s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 322s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 332s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 332s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 332s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 332s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 332s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 332s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 332s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 332s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 332s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 332s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 332s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 341s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 341s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 341s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 341s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 341s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 341s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 341s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 341s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 341s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 341s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 341s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 341s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 341s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 341s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 341s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 350s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 350s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 350s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 350s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 350s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 350s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 350s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 350s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 351s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 351s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 351s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 351s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 351s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 351s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 351s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 351s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 352s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 352s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 352s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 352s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 352s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 352s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 354s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 357s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 358s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 358s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 358s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 358s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 358s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 358s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 359s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 359s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 359s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 359s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 359s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 359s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 359s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 359s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 360s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 360s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 361s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 361s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 361s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 361s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 361s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 361s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 361s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 361s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 362s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 363s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 363s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 363s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 363s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 363s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 363s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 363s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 364s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 364s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 364s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 364s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 364s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 364s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 364s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 364s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 364s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 364s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 389s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 389s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 389s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 390s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 390s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 390s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 390s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 413s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 413s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 413s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 413s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 414s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 414s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 414s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 414s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 416s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 418s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 420s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 421s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 421s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 421s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 423s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 424s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 424s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 424s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 425s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 425s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 425s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 425s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 425s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 426s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 426s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 426s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 427s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 427s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 428s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 428s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 428s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 428s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 428s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 428s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 429s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 429s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 429s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 429s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 429s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 440s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 444s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 444s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 453s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 453s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 457s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 458s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 458s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 458s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 458s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 458s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 458s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 458s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 458s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 459s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 459s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 459s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 460s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 460s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 460s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 460s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 460s Get:198 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 465s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 465s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 465s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 466s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 466s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 467s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 471s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 472s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 472s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 472s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 472s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 473s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 473s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 474s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 474s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 474s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 475s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 475s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 475s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 475s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 475s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 478s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 479s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 480s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 480s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 480s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 480s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 489s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 507s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 508s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 570s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 570s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 570s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 571s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 572s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 572s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 573s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 575s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 575s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 575s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 576s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 579s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 579s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 579s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 580s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 581s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 582s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 583s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 584s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 584s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 584s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 588s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 593s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 593s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 593s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 594s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 595s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 596s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 598s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 599s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 599s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 600s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 600s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 600s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 601s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 601s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 602s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 602s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 602s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 602s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 604s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 605s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-deseq2 arm64 1.46.0+dfsg-2 [1237 kB] 606s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 606s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 607s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB] 608s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 609s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.2.0-2 [752 kB] 609s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 609s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 609s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 610s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 611s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 612s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 613s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-shortread arm64 1.64.0-3 [5243 kB] 617s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 619s Preconfiguring packages ... 619s Fetched 448 MB in 6min 10s (1211 kB/s) 619s Selecting previously unselected package libisl23:arm64. 619s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 619s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 619s Unpacking libisl23:arm64 (0.27-1) ... 619s Selecting previously unselected package libmpc3:arm64. 619s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 619s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 619s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 619s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 619s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 619s Selecting previously unselected package cpp-14. 619s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 619s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 619s Selecting previously unselected package cpp-aarch64-linux-gnu. 619s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 619s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 619s Selecting previously unselected package cpp. 619s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 619s Unpacking cpp (4:14.2.0-1ubuntu1) ... 619s Selecting previously unselected package libcc1-0:arm64. 619s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 619s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 619s Selecting previously unselected package libgomp1:arm64. 619s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 619s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 619s Selecting previously unselected package libitm1:arm64. 619s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 619s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package libasan8:arm64. 620s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 620s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package liblsan0:arm64. 620s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 620s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package libtsan2:arm64. 620s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 620s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package libubsan1:arm64. 620s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 620s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package libhwasan0:arm64. 620s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 620s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 620s Selecting previously unselected package libgcc-14-dev:arm64. 620s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 620s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 620s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 620s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 620s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 620s Selecting previously unselected package gcc-14. 620s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 620s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 620s Selecting previously unselected package gcc-aarch64-linux-gnu. 620s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 620s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 620s Selecting previously unselected package gcc. 620s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 620s Unpacking gcc (4:14.2.0-1ubuntu1) ... 620s Selecting previously unselected package libstdc++-14-dev:arm64. 621s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 621s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 621s Selecting previously unselected package g++-14-aarch64-linux-gnu. 621s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 621s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 621s Selecting previously unselected package g++-14. 621s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 621s Unpacking g++-14 (14.2.0-17ubuntu3) ... 621s Selecting previously unselected package g++-aarch64-linux-gnu. 621s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 621s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 621s Selecting previously unselected package g++. 621s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 621s Unpacking g++ (4:14.2.0-1ubuntu1) ... 621s Selecting previously unselected package build-essential. 621s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 621s Unpacking build-essential (12.10ubuntu1) ... 621s Selecting previously unselected package dctrl-tools. 621s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 621s Unpacking dctrl-tools (2.24-3build3) ... 621s Selecting previously unselected package fonts-dejavu-mono. 621s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 621s Unpacking fonts-dejavu-mono (2.37-8) ... 621s Selecting previously unselected package fonts-dejavu-core. 621s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 621s Unpacking fonts-dejavu-core (2.37-8) ... 621s Selecting previously unselected package fontconfig-config. 621s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 621s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 622s Selecting previously unselected package libfontconfig1:arm64. 622s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 622s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 622s Selecting previously unselected package fontconfig. 622s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 622s Unpacking fontconfig (2.15.0-2ubuntu1) ... 622s Selecting previously unselected package fonts-font-awesome. 622s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 622s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 622s Selecting previously unselected package fonts-glyphicons-halflings. 622s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 622s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 622s Selecting previously unselected package fonts-lmodern. 622s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 622s Unpacking fonts-lmodern (2.005-1) ... 622s Selecting previously unselected package fonts-mathjax. 622s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 622s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 622s Selecting previously unselected package libgfortran5:arm64. 622s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 622s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 622s Selecting previously unselected package libgfortran-14-dev:arm64. 622s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 622s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 622s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 622s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 622s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 622s Selecting previously unselected package gfortran-14. 622s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 622s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 622s Selecting previously unselected package gfortran-aarch64-linux-gnu. 622s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 622s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 622s Selecting previously unselected package gfortran. 622s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 622s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 622s Selecting previously unselected package icu-devtools. 622s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 622s Unpacking icu-devtools (76.1-1ubuntu2) ... 622s Selecting previously unselected package javascript-common. 622s Preparing to unpack .../042-javascript-common_12_all.deb ... 622s Unpacking javascript-common (12) ... 623s Selecting previously unselected package libio-string-perl. 623s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 623s Unpacking libio-string-perl (1.08-4) ... 623s Selecting previously unselected package liblatex-tounicode-perl. 623s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 623s Unpacking liblatex-tounicode-perl (0.55-1) ... 623s Selecting previously unselected package libbibtex-parser-perl. 623s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 623s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 623s Selecting previously unselected package libblas3:arm64. 623s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 623s Unpacking libblas3:arm64 (3.12.1-2) ... 623s Selecting previously unselected package libblas-dev:arm64. 623s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 623s Unpacking libblas-dev:arm64 (3.12.1-2) ... 623s Selecting previously unselected package libboost1.83-dev:arm64. 623s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 623s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 624s Selecting previously unselected package libboost-dev:arm64. 624s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 624s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 624s Selecting previously unselected package libbz2-dev:arm64. 624s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 624s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 624s Selecting previously unselected package libpixman-1-0:arm64. 625s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 625s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 625s Selecting previously unselected package libxcb-render0:arm64. 625s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 625s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 625s Selecting previously unselected package libxcb-shm0:arm64. 625s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 625s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 625s Selecting previously unselected package libxrender1:arm64. 625s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 625s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 625s Selecting previously unselected package libcairo2:arm64. 625s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 625s Unpacking libcairo2:arm64 (1.18.2-2) ... 625s Selecting previously unselected package libdatrie1:arm64. 625s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 625s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 625s Selecting previously unselected package libdeflate0:arm64. 625s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 625s Unpacking libdeflate0:arm64 (1.23-1) ... 625s Selecting previously unselected package libdeflate-dev:arm64. 625s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 625s Unpacking libdeflate-dev:arm64 (1.23-1) ... 625s Selecting previously unselected package libgraphite2-3:arm64. 625s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 625s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 625s Selecting previously unselected package libharfbuzz0b:arm64. 625s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 625s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 625s Selecting previously unselected package x11-common. 625s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 625s Unpacking x11-common (1:7.7+23ubuntu3) ... 625s Selecting previously unselected package libice6:arm64. 625s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 625s Unpacking libice6:arm64 (2:1.1.1-1) ... 625s Selecting previously unselected package libicu-dev:arm64. 625s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 625s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 625s Selecting previously unselected package libjpeg-turbo8:arm64. 625s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 625s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 625s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 625s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 625s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 625s Selecting previously unselected package libjpeg8:arm64. 625s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 625s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 625s Selecting previously unselected package libjpeg8-dev:arm64. 625s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 625s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 626s Selecting previously unselected package libjpeg-dev:arm64. 626s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 626s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 626s Selecting previously unselected package libjs-bootstrap. 626s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 626s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 626s Selecting previously unselected package libjs-popper.js. 626s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 626s Unpacking libjs-popper.js (1.16.1+ds-6) ... 626s Selecting previously unselected package libjs-bootstrap4. 626s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 626s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 626s Selecting previously unselected package libjs-d3. 626s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 626s Unpacking libjs-d3 (3.5.17-4) ... 626s Selecting previously unselected package libjs-es5-shim. 626s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 626s Unpacking libjs-es5-shim (4.6.7-2) ... 626s Selecting previously unselected package libjs-highlight.js. 626s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 626s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 626s Selecting previously unselected package libjs-jquery. 626s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 626s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 626s Selecting previously unselected package libjs-jquery-datatables. 626s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 626s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 626s Selecting previously unselected package libjs-sifter.js. 626s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 626s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 626s Selecting previously unselected package libjs-microplugin.js. 626s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 626s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 626s Selecting previously unselected package libjs-jquery-selectize.js. 626s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2024.20240313.70630+ds-5build2) ... 627s Selecting previously unselected package liblapack3:arm64. 627s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 627s Unpacking liblapack3:arm64 (3.12.1-2) ... 627s Selecting previously unselected package liblapack-dev:arm64. 627s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 627s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 627s Selecting previously unselected package liblerc4:arm64. 627s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 627s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 627s Selecting previously unselected package liblua5.4-0:arm64. 627s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 627s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 627s Selecting previously unselected package libmpfi0:arm64. 627s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 627s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 627s Selecting previously unselected package libncurses-dev:arm64. 627s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 627s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 627s Selecting previously unselected package libthai-data. 627s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 627s Unpacking libthai-data (0.1.29-2build1) ... 627s Selecting previously unselected package libthai0:arm64. 627s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 627s Unpacking libthai0:arm64 (0.1.29-2build1) ... 627s Selecting previously unselected package libpango-1.0-0:arm64. 627s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 627s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 627s Selecting previously unselected package libpangoft2-1.0-0:arm64. 627s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 627s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 627s Selecting previously unselected package libpangocairo-1.0-0:arm64. 627s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 627s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 627s Selecting previously unselected package libpaper2:arm64. 627s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 627s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 627s Selecting previously unselected package libpaper-utils. 627s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 627s Unpacking libpaper-utils (2.2.5-0.3) ... 627s Selecting previously unselected package libpcre2-16-0:arm64. 627s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 627s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 627s Selecting previously unselected package libpcre2-32-0:arm64. 627s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 627s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 627s Selecting previously unselected package libpcre2-posix3:arm64. 627s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 627s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 627s Selecting previously unselected package libpcre2-dev:arm64. 628s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 628s Unpacking libpcre2-dev:arm64 (10.45-1) ... 628s Selecting previously unselected package libpkgconf3:arm64. 628s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 628s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 628s Selecting previously unselected package zlib1g-dev:arm64. 628s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 628s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 628s Selecting previously unselected package libpng-dev:arm64. 628s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 628s Unpacking libpng-dev:arm64 (1.6.47-1) ... 628s Selecting previously unselected package libpotrace0:arm64. 628s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 628s Unpacking libpotrace0:arm64 (1.16-2build1) ... 628s Selecting previously unselected package libptexenc1:arm64. 628s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 628s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 628s Selecting previously unselected package libreadline-dev:arm64. 628s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 628s Unpacking libreadline-dev:arm64 (8.2-6) ... 628s Selecting previously unselected package libsharpyuv0:arm64. 628s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 628s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 628s Selecting previously unselected package libsm6:arm64. 628s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 628s Unpacking libsm6:arm64 (2:1.2.4-1) ... 628s Selecting previously unselected package libsynctex2:arm64. 628s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 628s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 628s Selecting previously unselected package libtcl8.6:arm64. 628s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 628s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 628s Selecting previously unselected package libteckit0:arm64. 628s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 628s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 628s Selecting previously unselected package libtexlua53-5:arm64. 628s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 628s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 628s Selecting previously unselected package libjbig0:arm64. 628s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 628s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 628s Selecting previously unselected package libwebp7:arm64. 628s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 628s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 628s Selecting previously unselected package libtiff6:arm64. 628s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 628s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 628s Selecting previously unselected package libxft2:arm64. 628s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 628s Unpacking libxft2:arm64 (2.3.6-1build1) ... 628s Selecting previously unselected package libxss1:arm64. 628s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 628s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 628s Selecting previously unselected package libtk8.6:arm64. 628s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 628s Unpacking libtk8.6:arm64 (8.6.16-1) ... 628s Selecting previously unselected package libxt6t64:arm64. 628s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 628s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 628s Selecting previously unselected package libxmu6:arm64. 628s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 628s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 629s Selecting previously unselected package libxpm4:arm64. 629s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 629s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 629s Selecting previously unselected package libxaw7:arm64. 629s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 629s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 629s Selecting previously unselected package libxi6:arm64. 629s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 629s Unpacking libxi6:arm64 (2:1.8.2-1) ... 629s Selecting previously unselected package libzzip-0-13t64:arm64. 629s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 629s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 629s Selecting previously unselected package zip. 629s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 629s Unpacking zip (3.0-14ubuntu2) ... 629s Selecting previously unselected package unzip. 629s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 629s Unpacking unzip (6.0-28ubuntu6) ... 629s Selecting previously unselected package xdg-utils. 629s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 629s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 629s Selecting previously unselected package r-base-core. 629s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 629s Unpacking r-base-core (4.4.3-1) ... 629s Selecting previously unselected package r-cran-littler. 629s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 629s Unpacking r-cran-littler (0.3.20-2) ... 629s Selecting previously unselected package littler. 629s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 629s Unpacking littler (0.3.20-2) ... 629s Selecting previously unselected package node-bootstrap-sass. 629s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 629s Unpacking node-bootstrap-sass (3.4.3-2) ... 629s Selecting previously unselected package node-html5shiv. 629s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 629s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 629s Selecting previously unselected package node-normalize.css. 629s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 629s Unpacking node-normalize.css (8.0.1-5) ... 629s Selecting previously unselected package pandoc-data. 629s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 629s Unpacking pandoc-data (3.1.11.1-3build1) ... 629s Selecting previously unselected package pandoc. 630s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 630s Unpacking pandoc (3.1.11.1+ds-2) ... 630s Selecting previously unselected package liblzma-dev:arm64. 630s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 630s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 630s Selecting previously unselected package pkgconf-bin. 630s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 630s Unpacking pkgconf-bin (1.8.1-4) ... 631s Selecting previously unselected package pkgconf:arm64. 631s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 631s Unpacking pkgconf:arm64 (1.8.1-4) ... 631s Selecting previously unselected package libtirpc-dev:arm64. 631s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 631s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 631s Selecting previously unselected package r-base-dev. 631s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 631s Unpacking r-base-dev (4.4.3-1) ... 631s Selecting previously unselected package pkg-r-autopkgtest. 631s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 631s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 631s Selecting previously unselected package r-bioc-biocgenerics. 631s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 631s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 631s Selecting previously unselected package r-bioc-biobase. 631s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 631s Unpacking r-bioc-biobase (2.66.0-2) ... 631s Selecting previously unselected package r-bioc-s4vectors. 631s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 631s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 631s Selecting previously unselected package r-bioc-iranges. 631s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_arm64.deb ... 631s Unpacking r-bioc-iranges (2.40.1-2) ... 631s Selecting previously unselected package r-cran-dbi. 631s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 631s Unpacking r-cran-dbi (1.2.3-1) ... 631s Selecting previously unselected package r-cran-bit. 631s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 631s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 631s Selecting previously unselected package r-cran-bit64. 631s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 631s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 631s Selecting previously unselected package r-cran-rlang. 631s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_arm64.deb ... 631s Unpacking r-cran-rlang (1.1.5-1) ... 631s Selecting previously unselected package r-cran-cli. 631s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 631s Unpacking r-cran-cli (3.6.4-1) ... 631s Selecting previously unselected package r-cran-glue. 631s Preparing to unpack .../152-r-cran-glue_1.8.0-1_arm64.deb ... 631s Unpacking r-cran-glue (1.8.0-1) ... 631s Selecting previously unselected package r-cran-lifecycle. 631s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 631s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 631s Selecting previously unselected package r-cran-vctrs. 631s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 631s Unpacking r-cran-vctrs (0.6.5-1) ... 631s Selecting previously unselected package r-cran-blob. 631s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 631s Unpacking r-cran-blob (1.2.4-1) ... 631s Selecting previously unselected package r-cran-fastmap. 631s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ... 631s Unpacking r-cran-fastmap (1.2.0-1) ... 631s Selecting previously unselected package r-cran-cachem. 631s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ... 631s Unpacking r-cran-cachem (1.1.0-1) ... 632s Selecting previously unselected package r-cran-memoise. 632s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 632s Unpacking r-cran-memoise (2.0.1-1) ... 632s Selecting previously unselected package r-cran-pkgconfig. 632s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 632s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 632s Selecting previously unselected package r-cran-plogr. 632s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 632s Unpacking r-cran-plogr (0.2.0-3build1) ... 632s Selecting previously unselected package r-cran-cpp11. 632s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 632s Unpacking r-cran-cpp11 (0.5.2-1) ... 632s Selecting previously unselected package r-cran-rsqlite. 632s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ... 632s Unpacking r-cran-rsqlite (2.3.9-1) ... 632s Selecting previously unselected package r-cran-curl. 632s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 632s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 632s Selecting previously unselected package r-cran-jsonlite. 632s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 632s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 632s Selecting previously unselected package r-cran-mime. 632s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ... 632s Unpacking r-cran-mime (0.12-2) ... 632s Selecting previously unselected package r-cran-sys. 632s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ... 632s Unpacking r-cran-sys (3.4.3-1) ... 632s Selecting previously unselected package r-cran-askpass. 632s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ... 632s Unpacking r-cran-askpass (1.2.1-1) ... 632s Selecting previously unselected package r-cran-openssl. 632s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 632s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 632s Selecting previously unselected package r-cran-r6. 632s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 632s Unpacking r-cran-r6 (2.6.1-1) ... 632s Selecting previously unselected package r-cran-httr. 632s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 632s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 632s Selecting previously unselected package r-cran-png. 632s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ... 632s Unpacking r-cran-png (0.1-8-1build2) ... 632s Selecting previously unselected package r-bioc-zlibbioc. 632s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 632s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 632s Selecting previously unselected package r-bioc-xvector. 632s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 632s Unpacking r-bioc-xvector (0.46.0-2) ... 632s Selecting previously unselected package r-bioc-ucsc.utils. 632s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 632s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 632s Selecting previously unselected package r-bioc-genomeinfodbdata. 632s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 632s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 632s Selecting previously unselected package r-bioc-genomeinfodb. 632s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 632s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 633s Selecting previously unselected package r-cran-crayon. 633s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 633s Unpacking r-cran-crayon (1.5.3-1) ... 633s Selecting previously unselected package r-bioc-biostrings. 633s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 633s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 633s Selecting previously unselected package r-bioc-keggrest. 633s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 633s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 633s Selecting previously unselected package r-bioc-annotationdbi. 633s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 633s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 633s Selecting previously unselected package r-bioc-biocio. 633s Preparing to unpack .../181-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 633s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 633s Selecting previously unselected package r-cran-formatr. 633s Preparing to unpack .../182-r-cran-formatr_1.14-2_all.deb ... 633s Unpacking r-cran-formatr (1.14-2) ... 633s Selecting previously unselected package r-cran-lambda.r. 633s Preparing to unpack .../183-r-cran-lambda.r_1.2.4-2build1_all.deb ... 633s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 633s Selecting previously unselected package r-cran-futile.options. 633s Preparing to unpack .../184-r-cran-futile.options_1.0.1-3build1_all.deb ... 633s Unpacking r-cran-futile.options (1.0.1-3build1) ... 633s Selecting previously unselected package r-cran-futile.logger. 633s Preparing to unpack .../185-r-cran-futile.logger_1.4.3-4build1_all.deb ... 633s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 633s Selecting previously unselected package r-cran-snow. 633s Preparing to unpack .../186-r-cran-snow_1%3a0.4.4-2_all.deb ... 633s Unpacking r-cran-snow (1:0.4.4-2) ... 633s Selecting previously unselected package r-cran-codetools. 633s Preparing to unpack .../187-r-cran-codetools_0.2-20-1_all.deb ... 633s Unpacking r-cran-codetools (0.2-20-1) ... 633s Selecting previously unselected package r-cran-bh. 633s Preparing to unpack .../188-r-cran-bh_1.84.0-1_all.deb ... 633s Unpacking r-cran-bh (1.84.0-1) ... 633s Selecting previously unselected package r-bioc-biocparallel. 633s Preparing to unpack .../189-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 633s Unpacking r-bioc-biocparallel (1.40.0-2) ... 633s Selecting previously unselected package r-cran-base64enc. 633s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_arm64.deb ... 633s Unpacking r-cran-base64enc (0.1-3-3) ... 633s Selecting previously unselected package r-cran-digest. 633s Preparing to unpack .../191-r-cran-digest_0.6.37-1_arm64.deb ... 633s Unpacking r-cran-digest (0.6.37-1) ... 633s Selecting previously unselected package r-cran-htmltools. 633s Preparing to unpack .../192-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 633s Unpacking r-cran-htmltools (0.5.8.1-1) ... 633s Selecting previously unselected package r-cran-evaluate. 633s Preparing to unpack .../193-r-cran-evaluate_1.0.3-1_all.deb ... 633s Unpacking r-cran-evaluate (1.0.3-1) ... 633s Selecting previously unselected package r-cran-xfun. 634s Preparing to unpack .../194-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 634s Unpacking r-cran-xfun (0.51+dfsg-1) ... 634s Selecting previously unselected package r-cran-highr. 634s Preparing to unpack .../195-r-cran-highr_0.11+dfsg-1_all.deb ... 634s Unpacking r-cran-highr (0.11+dfsg-1) ... 634s Selecting previously unselected package r-cran-yaml. 634s Preparing to unpack .../196-r-cran-yaml_2.3.10-1_arm64.deb ... 634s Unpacking r-cran-yaml (2.3.10-1) ... 634s Selecting previously unselected package libjs-mathjax. 634s Preparing to unpack .../197-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 634s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 634s Selecting previously unselected package r-cran-knitr. 634s Preparing to unpack .../198-r-cran-knitr_1.49+dfsg-1_all.deb ... 634s Unpacking r-cran-knitr (1.49+dfsg-1) ... 634s Selecting previously unselected package r-cran-jquerylib. 634s Preparing to unpack .../199-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 634s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 634s Selecting previously unselected package r-cran-fs. 634s Preparing to unpack .../200-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 634s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 634s Selecting previously unselected package r-cran-rappdirs. 634s Preparing to unpack .../201-r-cran-rappdirs_0.3.3-1_arm64.deb ... 634s Unpacking r-cran-rappdirs (0.3.3-1) ... 634s Selecting previously unselected package r-cran-sass. 634s Preparing to unpack .../202-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 635s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 635s Selecting previously unselected package r-cran-bslib. 635s Preparing to unpack .../203-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 635s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 635s Selecting previously unselected package r-cran-fontawesome. 635s Preparing to unpack .../204-r-cran-fontawesome_0.5.3-1_all.deb ... 635s Unpacking r-cran-fontawesome (0.5.3-1) ... 635s Selecting previously unselected package r-cran-tinytex. 635s Preparing to unpack .../205-r-cran-tinytex_0.56-1_all.deb ... 635s Unpacking r-cran-tinytex (0.56-1) ... 635s Selecting previously unselected package libjs-modernizr. 635s Preparing to unpack .../206-libjs-modernizr_3.13.0-0.1_all.deb ... 635s Unpacking libjs-modernizr (3.13.0-0.1) ... 635s Selecting previously unselected package r-cran-pkgkitten. 635s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ... 635s Unpacking r-cran-pkgkitten (0.2.4-1) ... 635s Selecting previously unselected package r-cran-rcpp. 635s Preparing to unpack .../208-r-cran-rcpp_1.0.14-1_arm64.deb ... 635s Unpacking r-cran-rcpp (1.0.14-1) ... 635s Selecting previously unselected package r-cran-later. 635s Preparing to unpack .../209-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 635s Unpacking r-cran-later (1.4.1+dfsg-1) ... 635s Selecting previously unselected package r-cran-magrittr. 635s Preparing to unpack .../210-r-cran-magrittr_2.0.3-1_arm64.deb ... 635s Unpacking r-cran-magrittr (2.0.3-1) ... 635s Selecting previously unselected package r-cran-promises. 635s Preparing to unpack .../211-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 635s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 635s Selecting previously unselected package r-cran-httpuv. 635s Preparing to unpack .../212-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 635s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 635s Selecting previously unselected package r-cran-xtable. 635s Preparing to unpack .../213-r-cran-xtable_1%3a1.8-4-2_all.deb ... 635s Unpacking r-cran-xtable (1:1.8-4-2) ... 635s Selecting previously unselected package r-cran-sourcetools. 635s Preparing to unpack .../214-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 635s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 635s Selecting previously unselected package r-cran-withr. 635s Preparing to unpack .../215-r-cran-withr_3.0.2+dfsg-1_all.deb ... 635s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 635s Selecting previously unselected package r-cran-commonmark. 635s Preparing to unpack .../216-r-cran-commonmark_1.9.2-2_arm64.deb ... 635s Unpacking r-cran-commonmark (1.9.2-2) ... 635s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 635s Preparing to unpack .../217-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 635s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 635s Selecting previously unselected package r-cran-shiny. 635s Preparing to unpack .../218-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 635s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 636s Selecting previously unselected package r-cran-rmarkdown. 636s Preparing to unpack .../219-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 636s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 636s Selecting previously unselected package r-cran-bookdown. 636s Preparing to unpack .../220-r-cran-bookdown_0.42+dfsg-1_all.deb ... 636s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 636s Selecting previously unselected package r-cran-biocmanager. 636s Preparing to unpack .../221-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 636s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 636s Selecting previously unselected package tex-common. 636s Preparing to unpack .../222-tex-common_6.19_all.deb ... 636s Unpacking tex-common (6.19) ... 636s Selecting previously unselected package t1utils. 636s Preparing to unpack .../223-t1utils_1.41-4build3_arm64.deb ... 636s Unpacking t1utils (1.41-4build3) ... 636s Selecting previously unselected package texlive-binaries. 636s Preparing to unpack .../224-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 636s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 636s Selecting previously unselected package texlive-base. 636s Preparing to unpack .../225-texlive-base_2024.20250114-1_all.deb ... 636s Unpacking texlive-base (2024.20250114-1) ... 637s Selecting previously unselected package texlive-latex-base. 637s Preparing to unpack .../226-texlive-latex-base_2024.20250114-1_all.deb ... 637s Unpacking texlive-latex-base (2024.20250114-1) ... 638s Selecting previously unselected package texlive-bibtex-extra. 638s Preparing to unpack .../227-texlive-bibtex-extra_2024.20250114-1_all.deb ... 638s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 640s Selecting previously unselected package r-bioc-biocversion. 640s Preparing to unpack .../228-r-bioc-biocversion_3.20.0-2_all.deb ... 640s Unpacking r-bioc-biocversion (3.20.0-2) ... 640s Selecting previously unselected package r-bioc-biocstyle. 640s Preparing to unpack .../229-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 640s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 640s Selecting previously unselected package r-bioc-genomicranges. 640s Preparing to unpack .../230-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 640s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 640s Selecting previously unselected package r-cran-xml. 640s Preparing to unpack .../231-r-cran-xml_3.99-0.18-1_arm64.deb ... 640s Unpacking r-cran-xml (3.99-0.18-1) ... 640s Selecting previously unselected package r-cran-bitops. 640s Preparing to unpack .../232-r-cran-bitops_1.0-9-1_arm64.deb ... 640s Unpacking r-cran-bitops (1.0-9-1) ... 640s Selecting previously unselected package r-bioc-rhtslib. 640s Preparing to unpack .../233-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 640s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 641s Selecting previously unselected package r-bioc-rsamtools. 641s Preparing to unpack .../234-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 641s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 641s Selecting previously unselected package r-cran-matrixstats. 641s Preparing to unpack .../235-r-cran-matrixstats_1.5.0-1_arm64.deb ... 641s Unpacking r-cran-matrixstats (1.5.0-1) ... 641s Selecting previously unselected package r-bioc-matrixgenerics. 641s Preparing to unpack .../236-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 641s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 641s Selecting previously unselected package r-cran-lattice. 641s Preparing to unpack .../237-r-cran-lattice_0.22-6-1_arm64.deb ... 641s Unpacking r-cran-lattice (0.22-6-1) ... 641s Selecting previously unselected package r-cran-matrix. 641s Preparing to unpack .../238-r-cran-matrix_1.7-3-1_arm64.deb ... 641s Unpacking r-cran-matrix (1.7-3-1) ... 641s Selecting previously unselected package r-cran-abind. 641s Preparing to unpack .../239-r-cran-abind_1.4-8-1_all.deb ... 641s Unpacking r-cran-abind (1.4-8-1) ... 641s Selecting previously unselected package r-bioc-s4arrays. 641s Preparing to unpack .../240-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 641s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 641s Selecting previously unselected package r-bioc-sparsearray. 641s Preparing to unpack .../241-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 641s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 641s Selecting previously unselected package r-bioc-delayedarray. 641s Preparing to unpack .../242-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 641s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 641s Selecting previously unselected package r-bioc-summarizedexperiment. 641s Preparing to unpack .../243-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 641s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 641s Selecting previously unselected package r-bioc-genomicalignments. 641s Preparing to unpack .../244-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 641s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 641s Selecting previously unselected package r-cran-rcurl. 641s Preparing to unpack .../245-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 641s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 642s Selecting previously unselected package r-cran-rjson. 642s Preparing to unpack .../246-r-cran-rjson_0.2.23-1_arm64.deb ... 642s Unpacking r-cran-rjson (0.2.23-1) ... 642s Selecting previously unselected package r-cran-restfulr. 642s Preparing to unpack .../247-r-cran-restfulr_0.0.15-1_arm64.deb ... 642s Unpacking r-cran-restfulr (0.0.15-1) ... 642s Selecting previously unselected package r-bioc-rtracklayer. 642s Preparing to unpack .../248-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 642s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 642s Selecting previously unselected package r-bioc-bsgenome. 642s Preparing to unpack .../249-r-bioc-bsgenome_1.74.0-2_all.deb ... 642s Unpacking r-bioc-bsgenome (1.74.0-2) ... 642s Selecting previously unselected package r-cran-locfit. 642s Preparing to unpack .../250-r-cran-locfit_1.5-9.12-1_arm64.deb ... 642s Unpacking r-cran-locfit (1.5-9.12-1) ... 642s Selecting previously unselected package r-cran-gtable. 642s Preparing to unpack .../251-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 642s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 642s Selecting previously unselected package r-cran-isoband. 642s Preparing to unpack .../252-r-cran-isoband_0.2.7-1_arm64.deb ... 642s Unpacking r-cran-isoband (0.2.7-1) ... 642s Selecting previously unselected package r-cran-mass. 642s Preparing to unpack .../253-r-cran-mass_7.3-64-1_arm64.deb ... 642s Unpacking r-cran-mass (7.3-64-1) ... 642s Selecting previously unselected package r-cran-nlme. 642s Preparing to unpack .../254-r-cran-nlme_3.1.167-1_arm64.deb ... 642s Unpacking r-cran-nlme (3.1.167-1) ... 642s Selecting previously unselected package r-cran-mgcv. 642s Preparing to unpack .../255-r-cran-mgcv_1.9-1-1_arm64.deb ... 642s Unpacking r-cran-mgcv (1.9-1-1) ... 642s Selecting previously unselected package r-cran-farver. 642s Preparing to unpack .../256-r-cran-farver_2.1.2-1_arm64.deb ... 642s Unpacking r-cran-farver (2.1.2-1) ... 642s Selecting previously unselected package r-cran-labeling. 642s Preparing to unpack .../257-r-cran-labeling_0.4.3-1_all.deb ... 642s Unpacking r-cran-labeling (0.4.3-1) ... 642s Selecting previously unselected package r-cran-colorspace. 642s Preparing to unpack .../258-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 642s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 642s Selecting previously unselected package r-cran-munsell. 642s Preparing to unpack .../259-r-cran-munsell_0.5.1-1_all.deb ... 642s Unpacking r-cran-munsell (0.5.1-1) ... 642s Selecting previously unselected package r-cran-rcolorbrewer. 642s Preparing to unpack .../260-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 642s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 643s Selecting previously unselected package r-cran-viridislite. 643s Preparing to unpack .../261-r-cran-viridislite_0.4.2-2_all.deb ... 643s Unpacking r-cran-viridislite (0.4.2-2) ... 643s Selecting previously unselected package r-cran-scales. 643s Preparing to unpack .../262-r-cran-scales_1.3.0-1_all.deb ... 643s Unpacking r-cran-scales (1.3.0-1) ... 643s Selecting previously unselected package r-cran-fansi. 643s Preparing to unpack .../263-r-cran-fansi_1.0.5-1_arm64.deb ... 643s Unpacking r-cran-fansi (1.0.5-1) ... 643s Selecting previously unselected package r-cran-utf8. 643s Preparing to unpack .../264-r-cran-utf8_1.2.4-1_arm64.deb ... 643s Unpacking r-cran-utf8 (1.2.4-1) ... 643s Selecting previously unselected package r-cran-pillar. 643s Preparing to unpack .../265-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 643s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 643s Selecting previously unselected package r-cran-tibble. 643s Preparing to unpack .../266-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 643s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 643s Selecting previously unselected package r-cran-ggplot2. 643s Preparing to unpack .../267-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 643s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 643s Selecting previously unselected package r-cran-rcpparmadillo. 643s Preparing to unpack .../268-r-cran-rcpparmadillo_14.2.3-1-1_arm64.deb ... 643s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 643s Selecting previously unselected package r-bioc-deseq2. 643s Preparing to unpack .../269-r-bioc-deseq2_1.46.0+dfsg-2_arm64.deb ... 643s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 643s Selecting previously unselected package r-cran-statmod. 643s Preparing to unpack .../270-r-cran-statmod_1.5.0-1_arm64.deb ... 643s Unpacking r-cran-statmod (1.5.0-1) ... 643s Selecting previously unselected package r-bioc-limma. 643s Preparing to unpack .../271-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 643s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 643s Selecting previously unselected package r-bioc-edger. 643s Preparing to unpack .../272-r-bioc-edger_4.4.2+dfsg-1_arm64.deb ... 643s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 643s Selecting previously unselected package r-bioc-genomicfeatures. 643s Preparing to unpack .../273-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 643s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 643s Selecting previously unselected package r-bioc-pwalign. 643s Preparing to unpack .../274-r-bioc-pwalign_1.2.0-2_arm64.deb ... 643s Unpacking r-bioc-pwalign (1.2.0-2) ... 644s Selecting previously unselected package r-cran-hwriter. 644s Preparing to unpack .../275-r-cran-hwriter_1.3.2.1-1_all.deb ... 644s Unpacking r-cran-hwriter (1.3.2.1-1) ... 644s Selecting previously unselected package r-cran-jpeg. 644s Preparing to unpack .../276-r-cran-jpeg_0.1-10-1_arm64.deb ... 644s Unpacking r-cran-jpeg (0.1-10-1) ... 644s Selecting previously unselected package r-cran-deldir. 644s Preparing to unpack .../277-r-cran-deldir_2.0-4-1build1_arm64.deb ... 644s Unpacking r-cran-deldir (2.0-4-1build1) ... 644s Selecting previously unselected package r-cran-rcppeigen. 644s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ... 644s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 644s Selecting previously unselected package r-cran-interp. 644s Preparing to unpack .../279-r-cran-interp_1.1-6-1_arm64.deb ... 644s Unpacking r-cran-interp (1.1-6-1) ... 644s Selecting previously unselected package r-cran-latticeextra. 644s Preparing to unpack .../280-r-cran-latticeextra_0.6-30-1_all.deb ... 644s Unpacking 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645s Setting up tex-common (6.19) ... 645s update-language: texlive-base not installed and configured, doing nothing! 645s Setting up libio-string-perl (1.08-4) ... 645s Setting up zip (3.0-14ubuntu2) ... 645s Setting up libpcre2-32-0:arm64 (10.45-1) ... 645s Setting up libblas3:arm64 (3.12.1-2) ... 645s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 645s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 645s Setting up libpkgconf3:arm64 (1.8.1-4) ... 645s Setting up libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 645s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 645s Setting up t1utils (1.41-4build3) ... 645s Setting up libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 645s Setting up libjs-d3 (3.5.17-4) ... 645s Setting up fonts-dejavu-mono (2.37-8) ... 645s Setting up libmpc3:arm64 (1.3.1-1build2) ... 645s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 650s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 650s Setting up texlive-bibtex-extra (2024.20250114-1) ... 650s Setting up r-cran-interp (1.1-6-1) ... 650s Setting up r-cran-httr (1.4.7+dfsg-1) ... 650s Setting up r-cran-scales (1.3.0-1) ... 650s Setting up r-cran-memoise (2.0.1-1) ... 650s Setting up r-cran-promises (1.3.2+dfsg-1) ... 650s Setting up r-cran-blob (1.2.4-1) ... 650s Setting up r-bioc-xvector (0.46.0-2) ... 650s Setting up r-cran-rsqlite (2.3.9-1) ... 650s Setting up r-base-dev (4.4.3-1) ... 650s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 650s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 650s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 650s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 650s Setting up r-cran-latticeextra (0.6-30-1) ... 650s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 650s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 650s Setting up 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Processing triggers for libc-bin (2.41-1ubuntu2) ... 650s Processing triggers for man-db (2.13.0-1) ... 651s Processing triggers for install-info (7.1.1-1) ... 651s Processing triggers for tex-common (6.19) ... 652s Running updmap-sys. This may take some time... done. 652s Running mktexlsr /var/lib/texmf ... done. 652s Building format(s) --all. 690s This may take some time... done. 691s autopkgtest [15:18:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 691s autopkgtest [15:18:26]: test pkg-r-autopkgtest: [----------------------- 691s Test: Try to load the R library GenomicAlignments 691s 691s R version 4.4.3 (2025-02-28) -- "Trophy Case" 691s Copyright (C) 2025 The R Foundation for Statistical Computing 691s Platform: aarch64-unknown-linux-gnu 691s 691s R is free software and comes with ABSOLUTELY NO WARRANTY. 691s You are welcome to redistribute it under certain conditions. 691s Type 'license()' or 'licence()' for distribution details. 691s 691s R is a collaborative project with many contributors. 691s Type 'contributors()' for more information and 691s 'citation()' on how to cite R or R packages in publications. 691s 691s Type 'demo()' for some demos, 'help()' for on-line help, or 691s 'help.start()' for an HTML browser interface to help. 691s Type 'q()' to quit R. 691s 691s > library('GenomicAlignments') 691s Loading required package: BiocGenerics 692s 692s Attaching package: ‘BiocGenerics’ 692s 692s The following objects are masked from ‘package:stats’: 692s 692s IQR, mad, sd, var, xtabs 692s 692s The following objects are masked from ‘package:base’: 692s 692s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 692s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 692s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 692s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 692s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 692s table, tapply, union, unique, unsplit, which.max, which.min 692s 692s Loading required package: S4Vectors 692s Loading required package: stats4 692s 692s Attaching package: ‘S4Vectors’ 692s 692s The following object is masked from ‘package:utils’: 692s 692s findMatches 692s 692s The following objects are masked from ‘package:base’: 692s 692s expand.grid, I, unname 692s 692s Loading required package: IRanges 693s Loading required package: GenomeInfoDb 693s Loading required package: GenomicRanges 693s Loading required package: SummarizedExperiment 693s Loading required package: MatrixGenerics 693s Loading required package: matrixStats 694s 694s Attaching package: ‘MatrixGenerics’ 694s 694s The following objects are masked from ‘package:matrixStats’: 694s 694s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 694s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 694s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 694s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 694s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 694s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 694s colWeightedMeans, colWeightedMedians, colWeightedSds, 694s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 694s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 694s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 694s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 694s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 694s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 694s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 694s rowWeightedSds, rowWeightedVars 694s 694s Loading required package: Biobase 694s Welcome to Bioconductor 694s 694s Vignettes contain introductory material; view with 694s 'browseVignettes()'. To cite Bioconductor, see 694s 'citation("Biobase")', and for packages 'citation("pkgname")'. 694s 694s 694s Attaching package: ‘Biobase’ 694s 694s The following object is masked from ‘package:MatrixGenerics’: 694s 694s rowMedians 694s 694s The following objects are masked from ‘package:matrixStats’: 694s 694s anyMissing, rowMedians 694s 696s Loading required package: Biostrings 696s Loading required package: XVector 697s 697s Attaching package: ‘Biostrings’ 697s 697s The following object is masked from ‘package:base’: 697s 697s strsplit 697s 697s Loading required package: Rsamtools 698s > 698s > 698s Other tests are currently unsupported! 698s They will be progressively added. 698s autopkgtest [15:18:33]: test pkg-r-autopkgtest: -----------------------] 699s pkg-r-autopkgtest PASS 699s autopkgtest [15:18:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 699s autopkgtest [15:18:34]: @@@@@@@@@@@@@@@@@@@@ summary 699s pkg-r-autopkgtest PASS 718s nova [W] Using flock in prodstack6-arm64 718s Creating nova instance adt-plucky-arm64-r-bioc-genomicalignments-20250315-150655-juju-7f2275-prod-proposed-migration-environment-2-684f187d-66d1-4cb5-8b3e-af4b4ea8a02c from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 718s nova [W] Timed out waiting for 3d4e7a9e-c2c9-422f-a84f-6d55afa4dfe3 to get deleted.