0s autopkgtest [15:06:44]: starting date and time: 2025-03-15 15:06:44+0000 0s autopkgtest [15:06:44]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:06:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4sbygq_t/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-eir --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-37.secgroup --name adt-plucky-arm64-r-bioc-eir-20250315-150644-juju-7f2275-prod-proposed-migration-environment-2-de53ee95-7e0c-4270-859d-219bc0ea2135 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 158s autopkgtest [15:09:22]: testbed dpkg architecture: arm64 158s autopkgtest [15:09:22]: testbed apt version: 2.9.33 158s autopkgtest [15:09:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 159s autopkgtest [15:09:23]: testbed release detected to be: None 159s autopkgtest [15:09:23]: updating testbed package index (apt update) 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 160s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 160s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 160s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 160s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 160s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 161s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 161s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 162s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 162s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 162s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 162s Fetched 1094 kB in 2s (592 kB/s) 163s Reading package lists... 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Calculating upgrade... 165s Calculating upgrade... 166s The following packages will be upgraded: 166s python3-jinja2 strace 166s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 608 kB of archives. 166s After this operation, 11.3 kB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 167s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 167s Fetched 608 kB in 1s (594 kB/s) 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 168s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 168s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 168s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 168s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 168s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 168s Setting up strace (6.13+ds-1ubuntu1) ... 168s Processing triggers for man-db (2.13.0-1) ... 169s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s Solving dependencies... 172s The following packages will be REMOVED: 172s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 172s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 172s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 172s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 173s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 173s After this operation, 267 MB disk space will be freed. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 173s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 173s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 173s Removing libpython3.12t64:arm64 (3.12.9-1) ... 173s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 173s Removing libnsl2:arm64 (1.3.0-3build3) ... 173s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 173s Removing libunwind8:arm64 (1.6.2-3.1) ... 173s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 174s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 176s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 176s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 176s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 176s /etc/kernel/postrm.d/initramfs-tools: 176s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 176s /etc/kernel/postrm.d/zz-flash-kernel: 176s flash-kernel: Kernel 6.11.0-8-generic has been removed. 176s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 177s /etc/kernel/postrm.d/zz-update-grub: 177s Sourcing file `/etc/default/grub' 177s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 177s Generating grub configuration file ... 177s Found linux image: /boot/vmlinuz-6.14.0-10-generic 177s Found initrd image: /boot/initrd.img-6.14.0-10-generic 178s Warning: os-prober will not be executed to detect other bootable partitions. 178s Systems on them will not be added to the GRUB boot configuration. 178s Check GRUB_DISABLE_OS_PROBER documentation entry. 178s Adding boot menu entry for UEFI Firmware Settings ... 178s done 178s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 178s Processing triggers for libc-bin (2.41-1ubuntu1) ... 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 178s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 178s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 178s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 179s autopkgtest [15:09:43]: upgrading testbed (apt dist-upgrade and autopurge) 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 180s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s Entering ResolveByKeep 182s 182s Calculating upgrade... 183s The following packages will be upgraded: 183s libc-bin libc-dev-bin libc6 libc6-dev locales 183s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 9530 kB of archives. 183s After this operation, 0 B of additional disk space will be used. 183s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 185s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 188s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 188s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 193s Preconfiguring packages ... 193s Fetched 9530 kB in 10s (929 kB/s) 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 193s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 193s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 194s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 194s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 194s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 194s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 194s Setting up libc6:arm64 (2.41-1ubuntu2) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 195s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 195s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 195s Setting up libc-bin (2.41-1ubuntu2) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 195s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 195s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 195s Setting up locales (2.41-1ubuntu2) ... 197s Generating locales (this might take a while)... 199s en_US.UTF-8... done 199s Generation complete. 199s Setting up libc-dev-bin (2.41-1ubuntu2) ... 199s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 199s Processing triggers for man-db (2.13.0-1) ... 200s Processing triggers for systemd (257.3-1ubuntu3) ... 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 204s Solving dependencies... 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s autopkgtest [15:10:09]: rebooting testbed after setup commands that affected boot 228s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 235s autopkgtest [15:10:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 238s autopkgtest [15:10:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-eir 241s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-eir 1.46.0+ds-2 (dsc) [2199 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-eir 1.46.0+ds-2 (tar) [63.3 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-eir 1.46.0+ds-2 (diff) [5920 B] 241s gpgv: Signature made Sun Jan 12 02:34:52 2025 UTC 241s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 241s gpgv: issuer "crusoe@debian.org" 241s gpgv: Can't check signature: No public key 241s dpkg-source: warning: cannot verify inline signature for ./r-bioc-eir_1.46.0+ds-2.dsc: no acceptable signature found 241s autopkgtest [15:10:45]: testing package r-bioc-eir version 1.46.0+ds-2 242s autopkgtest [15:10:46]: build not needed 243s autopkgtest [15:10:47]: test pkg-r-autopkgtest: preparing testbed 243s Reading package lists... 244s Building dependency tree... 244s Reading state information... 245s Starting pkgProblemResolver with broken count: 0 245s Starting 2 pkgProblemResolver with broken count: 0 245s Done 248s The following NEW packages will be installed: 248s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 248s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 248s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 248s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 248s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 248s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 248s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 248s libboost-dev libboost1.83-dev libbz2-dev libcairo-gobject2 libcairo2 248s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev 248s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-14-dev libgfortran5 248s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev 248s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 248s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 248s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 248s libjs-jquery-datatables libjs-jquery-datatables-extensions 248s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 248s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 248s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 248s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 248s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 248s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 248s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 248s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 248s librsvg2-2 libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 248s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 248s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 248s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 248s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 248s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 248s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-chemminer 248s r-bioc-eir r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 248s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 248s r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-cpp11 248s r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt 248s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 248s r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 248s r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 248s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 248s r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 248s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv 248s r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 248s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-r6 248s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy 248s r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 248s r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 248s r-cran-snowfall r-cran-sourcetools r-cran-stringi r-cran-tibble 248s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 248s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 248s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 248s xdg-utils zip zlib1g-dev 248s 0 upgraded, 246 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 362 MB of archives. 248s After this operation, 1251 MB of additional disk space will be used. 248s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 261s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 261s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 261s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 261s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 261s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 261s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 261s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 264s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 266s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 270s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 271s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 273s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 276s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 301s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 302s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 302s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 302s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 304s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 316s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 316s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 316s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 316s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 316s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 316s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 316s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 317s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 317s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 317s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 317s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 318s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 318s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 323s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 325s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 325s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 326s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 337s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 337s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 337s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 337s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 337s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 337s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 337s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 337s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 337s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 337s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 337s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 346s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 346s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 346s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 346s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 346s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 346s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 346s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 347s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo-gobject2 arm64 1.18.2-2 [127 kB] 347s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 347s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 347s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 347s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 347s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 347s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 347s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 347s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 347s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 347s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 348s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 348s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-2 [147 kB] 348s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 348s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 348s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 348s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 349s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 359s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 359s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 359s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 359s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 359s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 359s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 360s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 360s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 360s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 360s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 360s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 361s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 361s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 361s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 361s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 361s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 361s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 361s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 361s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 361s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 362s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 363s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 367s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 368s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 368s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 368s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 368s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 368s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 369s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 369s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 369s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 369s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 369s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 369s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 369s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 369s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 370s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 370s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 371s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 371s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 371s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 371s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 371s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 librsvg2-2 arm64 2.59.90+dfsg-2 [1722 kB] 373s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 373s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 373s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 374s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 374s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 374s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 374s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 374s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 375s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 375s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 375s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 375s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 375s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 375s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 375s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 375s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 375s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 375s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 401s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 401s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 401s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 401s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 401s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 401s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 401s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 425s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 425s Get:144 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 425s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 425s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 425s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 425s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 425s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 425s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 425s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 426s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 426s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 427s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 428s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 428s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 428s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 428s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 428s Get:159 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 433s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 434s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 434s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 434s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 434s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 435s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 435s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 435s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 436s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 436s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 436s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 436s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 436s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 437s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 441s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 442s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 442s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 442s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 442s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 444s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 444s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 444s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 444s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 445s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 445s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 445s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 445s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 446s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 446s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 446s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 449s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 450s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 451s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 451s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 451s Get:194 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 451s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 458s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 475s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 476s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 547s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 547s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 547s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 548s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 548s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 549s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 549s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 550s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 551s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 552s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 553s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 554s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 558s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 560s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 561s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 561s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 562s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 563s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 563s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 563s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 564s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 564s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 564s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 565s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 566s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 566s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 566s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 569s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 570s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 570s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 570s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 570s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 570s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dt all 0.33+dfsg-1 [250 kB] 570s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsvg arm64 2.6.1-1 [272 kB] 570s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 571s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 571s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-chemminer arm64 3.58.0+dfsg-2 [1198 kB] 572s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 572s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snowfall all 1.84-6.3-1 [248 kB] 572s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 572s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppannoy arm64 0.0.22-1 [231 kB] 572s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-eir arm64 1.46.0+ds-2 [208 kB] 572s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 573s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 573s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 573s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 573s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 573s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 575s Preconfiguring packages ... 575s Fetched 362 MB in 5min 27s (1108 kB/s) 575s Selecting previously unselected package libisl23:arm64. 575s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 575s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 575s Unpacking libisl23:arm64 (0.27-1) ... 575s Selecting previously unselected package libmpc3:arm64. 575s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 575s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 575s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 575s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 575s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 575s Selecting previously unselected package cpp-14. 576s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 576s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 576s Selecting previously unselected package cpp-aarch64-linux-gnu. 576s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 576s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 576s Selecting previously unselected package cpp. 576s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 576s Unpacking cpp (4:14.2.0-1ubuntu1) ... 576s Selecting previously unselected package libcc1-0:arm64. 576s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libgomp1:arm64. 576s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libitm1:arm64. 576s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libasan8:arm64. 576s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package liblsan0:arm64. 576s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libtsan2:arm64. 576s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libubsan1:arm64. 576s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libhwasan0:arm64. 576s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 576s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 576s Selecting previously unselected package libgcc-14-dev:arm64. 576s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 576s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 576s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 576s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 576s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 577s Selecting previously unselected package gcc-14. 577s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 577s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 577s Selecting previously unselected package gcc-aarch64-linux-gnu. 577s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 577s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 577s Selecting previously unselected package gcc. 577s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 577s Unpacking gcc (4:14.2.0-1ubuntu1) ... 577s Selecting previously unselected package libstdc++-14-dev:arm64. 577s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 577s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 577s Selecting previously unselected package g++-14-aarch64-linux-gnu. 577s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 577s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 577s Selecting previously unselected package g++-14. 577s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 577s Unpacking g++-14 (14.2.0-17ubuntu3) ... 577s Selecting previously unselected package g++-aarch64-linux-gnu. 577s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 577s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 577s Selecting previously unselected package g++. 577s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 577s Unpacking g++ (4:14.2.0-1ubuntu1) ... 577s Selecting previously unselected package build-essential. 577s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 577s Unpacking build-essential (12.10ubuntu1) ... 577s Selecting previously unselected package dctrl-tools. 577s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 577s Unpacking dctrl-tools (2.24-3build3) ... 577s Selecting previously unselected package fonts-dejavu-mono. 577s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 577s Unpacking fonts-dejavu-mono (2.37-8) ... 577s Selecting previously unselected package fonts-dejavu-core. 577s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 577s Unpacking fonts-dejavu-core (2.37-8) ... 577s Selecting previously unselected package fontconfig-config. 577s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 578s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 578s Selecting previously unselected package libfontconfig1:arm64. 578s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 578s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 578s Selecting previously unselected package fontconfig. 578s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 578s Unpacking fontconfig (2.15.0-2ubuntu1) ... 578s Selecting previously unselected package fonts-font-awesome. 578s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 578s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 578s Selecting previously unselected package fonts-glyphicons-halflings. 578s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 578s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 578s Selecting previously unselected package fonts-lmodern. 578s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 578s Unpacking fonts-lmodern (2.005-1) ... 578s Selecting previously unselected package fonts-mathjax. 578s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 578s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 578s Selecting previously unselected package libgfortran5:arm64. 578s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 578s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 578s Selecting previously unselected package libgfortran-14-dev:arm64. 578s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 578s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 578s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 578s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 578s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 578s Selecting previously unselected package gfortran-14. 578s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 578s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 578s Selecting previously unselected package gfortran-aarch64-linux-gnu. 579s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 579s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 579s Selecting previously unselected package gfortran. 579s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 579s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 579s Selecting previously unselected package icu-devtools. 579s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 579s Unpacking icu-devtools (76.1-1ubuntu2) ... 579s Selecting previously unselected package javascript-common. 579s Preparing to unpack .../042-javascript-common_12_all.deb ... 579s Unpacking javascript-common (12) ... 579s Selecting previously unselected package libio-string-perl. 579s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 579s Unpacking libio-string-perl (1.08-4) ... 579s Selecting previously unselected package liblatex-tounicode-perl. 579s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 579s Unpacking liblatex-tounicode-perl (0.55-1) ... 579s Selecting previously unselected package libbibtex-parser-perl. 579s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 579s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 579s Selecting previously unselected package libblas3:arm64. 579s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 579s Unpacking libblas3:arm64 (3.12.1-2) ... 579s Selecting previously unselected package libblas-dev:arm64. 579s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 579s Unpacking libblas-dev:arm64 (3.12.1-2) ... 579s Selecting previously unselected package libboost1.83-dev:arm64. 579s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 579s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 580s Selecting previously unselected package libboost-dev:arm64. 581s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 581s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 581s Selecting previously unselected package libbz2-dev:arm64. 581s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 581s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 581s Selecting previously unselected package libpixman-1-0:arm64. 581s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 581s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 581s Selecting previously unselected package libxcb-render0:arm64. 581s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 581s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 581s Selecting previously unselected package libxcb-shm0:arm64. 581s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 581s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 581s Selecting previously unselected package libxrender1:arm64. 581s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 581s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 581s Selecting previously unselected package libcairo2:arm64. 581s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 581s Unpacking libcairo2:arm64 (1.18.2-2) ... 581s Selecting previously unselected package libcairo-gobject2:arm64. 581s Preparing to unpack .../056-libcairo-gobject2_1.18.2-2_arm64.deb ... 581s Unpacking libcairo-gobject2:arm64 (1.18.2-2) ... 581s Selecting previously unselected package libdatrie1:arm64. 581s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_arm64.deb ... 581s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 581s Selecting previously unselected package libdeflate0:arm64. 581s Preparing to unpack .../058-libdeflate0_1.23-1_arm64.deb ... 581s Unpacking libdeflate0:arm64 (1.23-1) ... 581s Selecting previously unselected package libdeflate-dev:arm64. 581s Preparing to unpack .../059-libdeflate-dev_1.23-1_arm64.deb ... 581s Unpacking libdeflate-dev:arm64 (1.23-1) ... 581s Selecting previously unselected package libgdk-pixbuf2.0-common. 581s Preparing to unpack .../060-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 581s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 581s Selecting previously unselected package libjpeg-turbo8:arm64. 581s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 581s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 581s Selecting previously unselected package libjpeg8:arm64. 581s Preparing to unpack .../062-libjpeg8_8c-2ubuntu11_arm64.deb ... 581s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 581s Selecting previously unselected package libjbig0:arm64. 581s Preparing to unpack .../063-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 581s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 581s Selecting previously unselected package liblerc4:arm64. 581s Preparing to unpack .../064-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 581s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 581s Selecting previously unselected package libsharpyuv0:arm64. 581s Preparing to unpack .../065-libsharpyuv0_1.5.0-0.1_arm64.deb ... 581s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 581s Selecting previously unselected package libwebp7:arm64. 581s Preparing to unpack .../066-libwebp7_1.5.0-0.1_arm64.deb ... 581s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 581s Selecting previously unselected package libtiff6:arm64. 581s Preparing to unpack .../067-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 581s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 581s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 581s Preparing to unpack .../068-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_arm64.deb ... 581s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-2) ... 581s Selecting previously unselected package libgraphite2-3:arm64. 581s Preparing to unpack .../069-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 581s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 581s Selecting previously unselected package libharfbuzz0b:arm64. 581s Preparing to unpack .../070-libharfbuzz0b_10.2.0-1_arm64.deb ... 581s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 581s Selecting previously unselected package x11-common. 581s Preparing to unpack .../071-x11-common_1%3a7.7+23ubuntu3_all.deb ... 581s Unpacking x11-common (1:7.7+23ubuntu3) ... 581s Selecting previously unselected package libice6:arm64. 582s Preparing to unpack .../072-libice6_2%3a1.1.1-1_arm64.deb ... 582s Unpacking libice6:arm64 (2:1.1.1-1) ... 582s Selecting previously unselected package libicu-dev:arm64. 582s Preparing to unpack .../073-libicu-dev_76.1-1ubuntu2_arm64.deb ... 582s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 582s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 582s 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unselected package libpaper-utils. 584s Preparing to unpack .../105-libpaper-utils_2.2.5-0.3_arm64.deb ... 584s Unpacking libpaper-utils (2.2.5-0.3) ... 584s Selecting previously unselected package libpcre2-16-0:arm64. 584s Preparing to unpack .../106-libpcre2-16-0_10.45-1_arm64.deb ... 584s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 584s Selecting previously unselected package libpcre2-32-0:arm64. 584s Preparing to unpack .../107-libpcre2-32-0_10.45-1_arm64.deb ... 584s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 584s Selecting previously unselected package libpcre2-posix3:arm64. 584s Preparing to unpack .../108-libpcre2-posix3_10.45-1_arm64.deb ... 584s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 584s Selecting previously unselected package libpcre2-dev:arm64. 584s Preparing to unpack .../109-libpcre2-dev_10.45-1_arm64.deb ... 584s Unpacking libpcre2-dev:arm64 (10.45-1) ... 584s Selecting previously unselected package libpkgconf3:arm64. 584s Preparing to unpack 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Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 584s Selecting previously unselected package libtexlua53-5:arm64. 584s Preparing to unpack .../121-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 584s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 584s Selecting previously unselected package libxft2:arm64. 584s Preparing to unpack .../122-libxft2_2.3.6-1build1_arm64.deb ... 584s Unpacking libxft2:arm64 (2.3.6-1build1) ... 585s Selecting previously unselected package libxss1:arm64. 585s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build3_arm64.deb ... 585s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 585s Selecting previously unselected package libtk8.6:arm64. 585s Preparing to unpack .../124-libtk8.6_8.6.16-1_arm64.deb ... 585s Unpacking libtk8.6:arm64 (8.6.16-1) ... 585s Selecting previously unselected package libxt6t64:arm64. 585s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 585s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) 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unpack .../131-zip_3.0-14ubuntu2_arm64.deb ... 585s Unpacking zip (3.0-14ubuntu2) ... 585s Selecting previously unselected package unzip. 585s Preparing to unpack .../132-unzip_6.0-28ubuntu6_arm64.deb ... 585s Unpacking unzip (6.0-28ubuntu6) ... 585s Selecting previously unselected package xdg-utils. 585s Preparing to unpack .../133-xdg-utils_1.2.1-2ubuntu1_all.deb ... 585s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 585s Selecting previously unselected package r-base-core. 585s Preparing to unpack .../134-r-base-core_4.4.3-1_arm64.deb ... 585s Unpacking r-base-core (4.4.3-1) ... 585s Selecting previously unselected package r-cran-littler. 585s Preparing to unpack .../135-r-cran-littler_0.3.20-2_arm64.deb ... 585s Unpacking r-cran-littler (0.3.20-2) ... 585s Selecting previously unselected package littler. 585s Preparing to unpack .../136-littler_0.3.20-2_all.deb ... 585s Unpacking littler (0.3.20-2) ... 585s Selecting previously unselected package node-bootstrap-sass. 586s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 586s Unpacking node-bootstrap-sass (3.4.3-2) ... 586s Selecting previously unselected package node-html5shiv. 586s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 586s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 586s Selecting previously unselected package node-normalize.css. 586s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 586s Unpacking node-normalize.css (8.0.1-5) ... 586s Selecting previously unselected package pandoc-data. 586s Preparing to unpack .../140-pandoc-data_3.1.11.1-3build1_all.deb ... 586s Unpacking pandoc-data (3.1.11.1-3build1) ... 586s Selecting previously unselected package pandoc. 586s Preparing to unpack .../141-pandoc_3.1.11.1+ds-2_arm64.deb ... 586s Unpacking pandoc (3.1.11.1+ds-2) ... 587s Selecting previously unselected package liblzma-dev:arm64. 587s Preparing to unpack .../142-liblzma-dev_5.6.4-1_arm64.deb ... 587s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 587s Selecting previously unselected package pkgconf-bin. 587s Preparing to unpack .../143-pkgconf-bin_1.8.1-4_arm64.deb ... 587s Unpacking pkgconf-bin (1.8.1-4) ... 587s Selecting previously unselected package pkgconf:arm64. 587s Preparing to unpack .../144-pkgconf_1.8.1-4_arm64.deb ... 587s Unpacking pkgconf:arm64 (1.8.1-4) ... 587s Selecting previously unselected package libtirpc-dev:arm64. 587s Preparing to unpack .../145-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 587s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 587s Selecting previously unselected package r-base-dev. 587s Preparing to unpack .../146-r-base-dev_4.4.3-1_all.deb ... 587s Unpacking r-base-dev (4.4.3-1) ... 587s Selecting previously unselected package pkg-r-autopkgtest. 587s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 587s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 587s Selecting previously unselected package r-bioc-biocgenerics. 587s Preparing to unpack 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previously unselected package r-cran-evaluate. 587s Preparing to unpack .../154-r-cran-evaluate_1.0.3-1_all.deb ... 587s Unpacking r-cran-evaluate (1.0.3-1) ... 587s Selecting previously unselected package r-cran-xfun. 588s Preparing to unpack .../155-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 588s Unpacking r-cran-xfun (0.51+dfsg-1) ... 588s Selecting previously unselected package r-cran-highr. 588s Preparing to unpack .../156-r-cran-highr_0.11+dfsg-1_all.deb ... 588s Unpacking r-cran-highr (0.11+dfsg-1) ... 588s Selecting previously unselected package r-cran-yaml. 588s Preparing to unpack .../157-r-cran-yaml_2.3.10-1_arm64.deb ... 588s Unpacking r-cran-yaml (2.3.10-1) ... 588s Selecting previously unselected package libjs-mathjax. 588s Preparing to unpack .../158-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 588s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 588s Selecting previously unselected package r-cran-knitr. 588s Preparing to unpack .../159-r-cran-knitr_1.49+dfsg-1_all.deb ... 588s Unpacking r-cran-knitr (1.49+dfsg-1) ... 588s Selecting previously unselected package r-cran-cachem. 588s Preparing to unpack .../160-r-cran-cachem_1.1.0-1_arm64.deb ... 588s Unpacking r-cran-cachem (1.1.0-1) ... 588s Selecting previously unselected package r-cran-jquerylib. 588s Preparing to unpack .../161-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 588s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 588s Selecting previously unselected package r-cran-jsonlite. 588s Preparing to unpack .../162-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 588s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 588s Selecting previously unselected package r-cran-cli. 588s Preparing to unpack .../163-r-cran-cli_3.6.4-1_arm64.deb ... 588s Unpacking r-cran-cli (3.6.4-1) ... 589s Selecting previously unselected package r-cran-glue. 589s Preparing to unpack .../164-r-cran-glue_1.8.0-1_arm64.deb ... 589s Unpacking r-cran-glue (1.8.0-1) ... 589s Selecting previously unselected package r-cran-lifecycle. 589s Preparing to unpack .../165-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 589s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 589s Selecting previously unselected package r-cran-memoise. 589s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 589s Unpacking r-cran-memoise (2.0.1-1) ... 589s Selecting previously unselected package r-cran-mime. 589s Preparing to unpack .../167-r-cran-mime_0.12-2_arm64.deb ... 589s Unpacking r-cran-mime (0.12-2) ... 589s Selecting previously unselected package r-cran-fs. 589s Preparing to unpack .../168-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 589s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 589s Selecting previously unselected package r-cran-r6. 589s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 589s Unpacking r-cran-r6 (2.6.1-1) ... 589s Selecting previously unselected package r-cran-rappdirs. 589s Preparing to unpack .../170-r-cran-rappdirs_0.3.3-1_arm64.deb ... 589s Unpacking r-cran-rappdirs (0.3.3-1) ... 589s Selecting previously unselected package r-cran-sass. 589s Preparing to unpack .../171-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 589s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 589s Selecting previously unselected package r-cran-bslib. 589s Preparing to unpack .../172-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 589s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 589s Selecting previously unselected package r-cran-fontawesome. 589s Preparing to unpack .../173-r-cran-fontawesome_0.5.3-1_all.deb ... 589s Unpacking r-cran-fontawesome (0.5.3-1) ... 589s Selecting previously unselected package r-cran-tinytex. 589s Preparing to unpack .../174-r-cran-tinytex_0.56-1_all.deb ... 589s Unpacking r-cran-tinytex (0.56-1) ... 589s Selecting previously unselected package libjs-modernizr. 589s Preparing to unpack .../175-libjs-modernizr_3.13.0-0.1_all.deb ... 589s Unpacking libjs-modernizr (3.13.0-0.1) ... 589s Selecting previously unselected package r-cran-pkgkitten. 589s Preparing to unpack .../176-r-cran-pkgkitten_0.2.4-1_all.deb ... 589s Unpacking r-cran-pkgkitten (0.2.4-1) ... 589s Selecting previously unselected package r-cran-rcpp. 589s Preparing to unpack .../177-r-cran-rcpp_1.0.14-1_arm64.deb ... 589s Unpacking r-cran-rcpp (1.0.14-1) ... 589s Selecting previously unselected package r-cran-later. 589s Preparing to unpack .../178-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 589s Unpacking r-cran-later (1.4.1+dfsg-1) ... 589s Selecting previously unselected package r-cran-magrittr. 590s Preparing to unpack .../179-r-cran-magrittr_2.0.3-1_arm64.deb ... 590s Unpacking r-cran-magrittr (2.0.3-1) ... 590s Selecting previously unselected package r-cran-promises. 590s Preparing to unpack .../180-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 590s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 590s Selecting previously unselected package r-cran-httpuv. 590s Preparing to unpack .../181-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 590s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 590s Selecting previously unselected package r-cran-xtable. 590s Preparing to unpack .../182-r-cran-xtable_1%3a1.8-4-2_all.deb ... 590s Unpacking r-cran-xtable (1:1.8-4-2) ... 590s Selecting previously unselected package r-cran-sourcetools. 590s Preparing to unpack .../183-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 590s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 590s Selecting previously unselected package r-cran-crayon. 590s Preparing to unpack .../184-r-cran-crayon_1.5.3-1_all.deb ... 590s Unpacking r-cran-crayon (1.5.3-1) ... 590s Selecting previously unselected package r-cran-withr. 590s Preparing to unpack .../185-r-cran-withr_3.0.2+dfsg-1_all.deb ... 590s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 590s Selecting previously unselected package r-cran-commonmark. 590s Preparing to unpack .../186-r-cran-commonmark_1.9.2-2_arm64.deb ... 590s Unpacking r-cran-commonmark (1.9.2-2) ... 590s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 590s Preparing to unpack .../187-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 590s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 590s Selecting previously unselected package r-cran-shiny. 590s Preparing to unpack .../188-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 590s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 590s Selecting previously unselected package r-cran-rmarkdown. 590s Preparing to unpack .../189-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 590s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 590s Selecting previously unselected package r-cran-bookdown. 590s Preparing to unpack .../190-r-cran-bookdown_0.42+dfsg-1_all.deb ... 590s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 590s Selecting previously unselected package r-cran-biocmanager. 590s Preparing to unpack .../191-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 590s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 590s Selecting previously unselected package tex-common. 590s Preparing to unpack .../192-tex-common_6.19_all.deb ... 590s Unpacking tex-common (6.19) ... 590s Selecting previously unselected package t1utils. 590s Preparing to unpack .../193-t1utils_1.41-4build3_arm64.deb ... 590s Unpacking t1utils (1.41-4build3) ... 590s Selecting previously unselected package texlive-binaries. 590s Preparing to unpack .../194-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 590s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 591s Selecting previously unselected package texlive-base. 591s Preparing to unpack .../195-texlive-base_2024.20250114-1_all.deb ... 591s Unpacking texlive-base (2024.20250114-1) ... 592s Selecting previously unselected package texlive-latex-base. 592s Preparing to unpack .../196-texlive-latex-base_2024.20250114-1_all.deb ... 592s Unpacking texlive-latex-base (2024.20250114-1) ... 592s Selecting previously unselected package texlive-bibtex-extra. 592s Preparing to unpack .../197-texlive-bibtex-extra_2024.20250114-1_all.deb ... 592s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 595s Selecting previously unselected package r-bioc-biocversion. 595s Preparing to unpack .../198-r-bioc-biocversion_3.20.0-2_all.deb ... 595s Unpacking r-bioc-biocversion (3.20.0-2) ... 595s Selecting previously unselected package r-bioc-biocstyle. 595s Preparing to unpack .../199-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 595s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 595s Selecting previously unselected package r-cran-rjson. 595s Preparing to unpack .../200-r-cran-rjson_0.2.23-1_arm64.deb ... 595s Unpacking r-cran-rjson (0.2.23-1) ... 595s Selecting previously unselected package r-cran-bitops. 595s Preparing to unpack .../201-r-cran-bitops_1.0-9-1_arm64.deb ... 595s Unpacking r-cran-bitops (1.0-9-1) ... 595s Selecting previously unselected package r-cran-rcurl. 595s Preparing to unpack .../202-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 595s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 595s Selecting previously unselected package r-cran-dbi. 595s Preparing to unpack .../203-r-cran-dbi_1.2.3-1_all.deb ... 595s Unpacking r-cran-dbi (1.2.3-1) ... 595s Selecting previously unselected package r-cran-gtable. 595s Preparing to unpack .../204-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 595s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 595s Selecting previously unselected package r-cran-isoband. 595s Preparing to unpack .../205-r-cran-isoband_0.2.7-1_arm64.deb ... 595s Unpacking r-cran-isoband (0.2.7-1) ... 595s Selecting previously unselected package r-cran-mass. 595s Preparing to unpack .../206-r-cran-mass_7.3-64-1_arm64.deb ... 595s Unpacking r-cran-mass (7.3-64-1) ... 595s Selecting previously unselected package r-cran-lattice. 595s Preparing to unpack .../207-r-cran-lattice_0.22-6-1_arm64.deb ... 595s Unpacking r-cran-lattice (0.22-6-1) ... 595s Selecting previously unselected package r-cran-nlme. 595s Preparing to unpack .../208-r-cran-nlme_3.1.167-1_arm64.deb ... 595s Unpacking r-cran-nlme (3.1.167-1) ... 595s Selecting previously unselected package r-cran-matrix. 595s Preparing to unpack .../209-r-cran-matrix_1.7-3-1_arm64.deb ... 595s Unpacking r-cran-matrix (1.7-3-1) ... 595s Selecting previously unselected package r-cran-mgcv. 595s Preparing to unpack .../210-r-cran-mgcv_1.9-1-1_arm64.deb ... 595s Unpacking r-cran-mgcv (1.9-1-1) ... 596s Selecting previously unselected package r-cran-farver. 596s Preparing to unpack .../211-r-cran-farver_2.1.2-1_arm64.deb ... 596s Unpacking r-cran-farver (2.1.2-1) ... 596s Selecting previously unselected package r-cran-labeling. 596s Preparing to unpack .../212-r-cran-labeling_0.4.3-1_all.deb ... 596s Unpacking r-cran-labeling (0.4.3-1) ... 596s Selecting previously unselected package r-cran-colorspace. 596s Preparing to unpack .../213-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 596s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 596s Selecting previously unselected package r-cran-munsell. 596s Preparing to unpack .../214-r-cran-munsell_0.5.1-1_all.deb ... 596s Unpacking r-cran-munsell (0.5.1-1) ... 596s Selecting previously unselected package r-cran-rcolorbrewer. 596s Preparing to unpack .../215-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 596s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 596s Selecting previously unselected package r-cran-viridislite. 596s Preparing to unpack .../216-r-cran-viridislite_0.4.2-2_all.deb ... 596s Unpacking r-cran-viridislite (0.4.2-2) ... 596s Selecting previously unselected package r-cran-scales. 596s Preparing to unpack .../217-r-cran-scales_1.3.0-1_all.deb ... 596s Unpacking r-cran-scales (1.3.0-1) ... 596s Selecting previously unselected package r-cran-fansi. 596s Preparing to unpack .../218-r-cran-fansi_1.0.5-1_arm64.deb ... 596s Unpacking r-cran-fansi (1.0.5-1) ... 596s Selecting previously unselected package r-cran-utf8. 596s Preparing to unpack .../219-r-cran-utf8_1.2.4-1_arm64.deb ... 596s Unpacking r-cran-utf8 (1.2.4-1) ... 596s Selecting previously unselected package r-cran-vctrs. 596s Preparing to unpack .../220-r-cran-vctrs_0.6.5-1_arm64.deb ... 596s Unpacking r-cran-vctrs (0.6.5-1) ... 596s Selecting previously unselected package r-cran-pillar. 596s Preparing to unpack .../221-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 596s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 596s Selecting previously unselected package r-cran-pkgconfig. 596s Preparing to unpack .../222-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 596s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 596s Selecting previously unselected package r-cran-tibble. 596s Preparing to unpack .../223-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 596s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 596s Selecting previously unselected package r-cran-ggplot2. 596s Preparing to unpack .../224-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 596s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 596s Selecting previously unselected package r-cran-gridextra. 596s Preparing to unpack .../225-r-cran-gridextra_2.3-3build1_all.deb ... 596s Unpacking r-cran-gridextra (2.3-3build1) ... 597s Selecting previously unselected package r-cran-png. 597s Preparing to unpack .../226-r-cran-png_0.1-8-1build2_arm64.deb ... 597s Unpacking r-cran-png (0.1-8-1build2) ... 597s Selecting previously unselected package r-cran-htmlwidgets. 597s Preparing to unpack .../227-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 597s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 597s Selecting previously unselected package r-cran-lazyeval. 597s Preparing to unpack .../228-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 597s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 597s Selecting previously unselected package r-cran-crosstalk. 597s Preparing to unpack .../229-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 597s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 597s Selecting previously unselected package r-cran-dt. 597s Preparing to unpack .../230-r-cran-dt_0.33+dfsg-1_all.deb ... 597s Unpacking r-cran-dt (0.33+dfsg-1) ... 597s Selecting previously unselected package r-cran-rsvg. 597s Preparing to unpack .../231-r-cran-rsvg_2.6.1-1_arm64.deb ... 597s Unpacking r-cran-rsvg (2.6.1-1) ... 597s Selecting previously unselected package r-cran-stringi. 597s Preparing to unpack .../232-r-cran-stringi_1.8.4-1build1_arm64.deb ... 597s Unpacking r-cran-stringi (1.8.4-1build1) ... 597s Selecting previously unselected package r-cran-bh. 597s Preparing to unpack .../233-r-cran-bh_1.84.0-1_all.deb ... 597s Unpacking r-cran-bh (1.84.0-1) ... 597s Selecting previously unselected package r-bioc-chemminer. 597s Preparing to unpack .../234-r-bioc-chemminer_3.58.0+dfsg-2_arm64.deb ... 597s Unpacking r-bioc-chemminer (3.58.0+dfsg-2) ... 597s Selecting previously unselected package r-cran-snow. 597s Preparing to unpack .../235-r-cran-snow_1%3a0.4.4-2_all.deb ... 597s Unpacking r-cran-snow (1:0.4.4-2) ... 597s Selecting previously unselected package r-cran-snowfall. 597s Preparing to unpack .../236-r-cran-snowfall_1.84-6.3-1_all.deb ... 597s Unpacking r-cran-snowfall (1.84-6.3-1) ... 597s Selecting previously unselected package r-cran-runit. 597s Preparing to unpack .../237-r-cran-runit_0.4.33-1_all.deb ... 597s Unpacking r-cran-runit (0.4.33-1) ... 597s Selecting previously unselected package r-cran-rcppannoy. 597s Preparing to unpack .../238-r-cran-rcppannoy_0.0.22-1_arm64.deb ... 597s Unpacking r-cran-rcppannoy (0.0.22-1) ... 597s Selecting previously unselected package r-bioc-eir. 597s Preparing to unpack .../239-r-bioc-eir_1.46.0+ds-2_arm64.deb ... 597s Unpacking r-bioc-eir (1.46.0+ds-2) ... 597s Selecting previously unselected package r-cran-bit. 597s Preparing to unpack .../240-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 597s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 597s Selecting previously unselected package r-cran-bit64. 597s Preparing to unpack .../241-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 597s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 597s Selecting previously unselected package r-cran-blob. 597s Preparing to unpack .../242-r-cran-blob_1.2.4-1_all.deb ... 597s Unpacking r-cran-blob (1.2.4-1) ... 598s Selecting previously unselected package r-cran-cpp11. 598s Preparing to unpack .../243-r-cran-cpp11_0.5.2-1_all.deb ... 598s Unpacking r-cran-cpp11 (0.5.2-1) ... 598s Selecting previously unselected package r-cran-plogr. 598s Preparing to unpack .../244-r-cran-plogr_0.2.0-3build1_all.deb ... 598s Unpacking r-cran-plogr (0.2.0-3build1) ... 598s Selecting previously unselected package r-cran-rsqlite. 598s Preparing to unpack .../245-r-cran-rsqlite_2.3.9-1_arm64.deb ... 598s Unpacking r-cran-rsqlite (2.3.9-1) ... 598s Setting up libjs-json (0~20221030+~1.0.8-1) ... 598s Setting up javascript-common (12) ... 598s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 598s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 598s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 598s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 598s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 598s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 598s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 598s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 598s Setting up libxi6:arm64 (2:1.8.2-1) ... 598s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 598s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 598s Setting up libjs-popper.js (1.16.1+ds-6) ... 598s Setting up libxcb-render0:arm64 (1.17.0-2) ... 598s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 598s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 598s Setting up libjs-lunr (2.3.9~dfsg-2) ... 598s Setting up unzip (6.0-28ubuntu6) ... 598s Setting up liblatex-tounicode-perl (0.55-1) ... 598s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 598s Setting up x11-common (1:7.7+23ubuntu3) ... 598s Setting up node-html5shiv (3.7.3+dfsg-5) ... 598s Setting up libdeflate0:arm64 (1.23-1) ... 598s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 598s Setting up 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skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 603s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 603s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 603s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 603s Setting up texlive-bibtex-extra (2024.20250114-1) ... 603s Setting up r-cran-gridextra (2.3-3build1) ... 603s Setting up r-cran-scales (1.3.0-1) ... 603s Setting up r-cran-memoise (2.0.1-1) ... 603s Setting up r-cran-promises (1.3.2+dfsg-1) ... 603s Setting up r-cran-blob (1.2.4-1) ... 603s Setting up r-cran-rsqlite (2.3.9-1) ... 603s Setting up r-base-dev (4.4.3-1) ... 603s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 603s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 603s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 603s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 603s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 603s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 603s Setting up r-cran-bookdown (0.42+dfsg-1) ... 603s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 603s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 603s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 603s Setting up r-cran-dt (0.33+dfsg-1) ... 603s Setting up r-bioc-chemminer (3.58.0+dfsg-2) ... 603s Setting up r-bioc-eir (1.46.0+ds-2) ... 603s Processing triggers for install-info (7.1.1-1) ... 603s Processing triggers for libc-bin (2.41-1ubuntu2) ... 603s Processing triggers for man-db (2.13.0-1) ... 605s Processing triggers for tex-common (6.19) ... 606s Running updmap-sys. This may take some time... done. 606s Running mktexlsr /var/lib/texmf ... done. 606s Building format(s) --all. 644s This may take some time... done. 645s autopkgtest [15:17:29]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 645s autopkgtest [15:17:29]: test pkg-r-autopkgtest: [----------------------- 645s Test: Try to load the R library eiR 645s 645s R version 4.4.3 (2025-02-28) -- "Trophy Case" 645s Copyright (C) 2025 The R Foundation for Statistical Computing 645s Platform: aarch64-unknown-linux-gnu 645s 645s R is free software and comes with ABSOLUTELY NO WARRANTY. 645s You are welcome to redistribute it under certain conditions. 645s Type 'license()' or 'licence()' for distribution details. 645s 645s R is a collaborative project with many contributors. 645s Type 'contributors()' for more information and 645s 'citation()' on how to cite R or R packages in publications. 645s 645s Type 'demo()' for some demos, 'help()' for on-line help, or 645s 'help.start()' for an HTML browser interface to help. 645s Type 'q()' to quit R. 645s 645s > library('eiR') 645s Loading required package: ChemmineR 646s Loading required package: DBI 646s code for methods in class “Rcpp_AnnoyAngular” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 646s code for methods in class “Rcpp_AnnoyAngular” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyEuclidean” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyEuclidean” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyManhattan” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyManhattan” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyHamming” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s code for methods in class “Rcpp_AnnoyHamming” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 647s > 647s > 647s Other tests are currently unsupported! 647s They will be progressively added. 647s autopkgtest [15:17:31]: test pkg-r-autopkgtest: -----------------------] 648s autopkgtest [15:17:32]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 648s pkg-r-autopkgtest PASS 648s autopkgtest [15:17:32]: @@@@@@@@@@@@@@@@@@@@ summary 648s pkg-r-autopkgtest PASS 654s nova [W] Using flock in prodstack6-arm64 654s Creating nova instance adt-plucky-arm64-r-bioc-eir-20250315-150644-juju-7f2275-prod-proposed-migration-environment-2-de53ee95-7e0c-4270-859d-219bc0ea2135 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 654s nova [W] Timed out waiting for ef8e675d-6ed8-47d3-9c92-2c2685ce3d21 to get deleted.