0s autopkgtest [15:06:04]: starting date and time: 2025-03-15 15:06:04+0000
  1s autopkgtest [15:06:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [15:06:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ckpidey6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-ebseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-plucky-arm64-r-bioc-ebseq-20250315-150604-juju-7f2275-prod-proposed-migration-environment-2-292c7068-ab22-41e3-a1ef-5c8b06a7f65d --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
164s autopkgtest [15:08:48]: testbed dpkg architecture: arm64
164s autopkgtest [15:08:48]: testbed apt version: 2.9.33
164s autopkgtest [15:08:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup
165s autopkgtest [15:08:49]: testbed release detected to be: None
165s autopkgtest [15:08:49]: updating testbed package index (apt update)
166s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
166s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
166s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
166s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
166s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
167s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
167s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
167s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
167s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
167s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
167s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
167s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
167s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
167s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
168s Fetched 1094 kB in 2s (633 kB/s)
168s Reading package lists...
169s Reading package lists...
169s Building dependency tree...
170s Reading state information...
170s Calculating upgrade...
170s Calculating upgrade...
171s The following packages will be upgraded:
171s   python3-jinja2 strace
171s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 608 kB of archives.
171s After this operation, 11.3 kB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
172s Fetched 608 kB in 1s (632 kB/s)
173s (Reading database ... 
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(Reading database ... 117701 files and directories currently installed.)
173s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
173s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
173s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
173s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
173s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
173s Setting up strace (6.13+ds-1ubuntu1) ...
173s Processing triggers for man-db (2.13.0-1) ...
174s Reading package lists...
175s Building dependency tree...
175s Reading state information...
175s Solving dependencies...
176s The following packages will be REMOVED:
176s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
176s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
176s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
176s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
176s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
176s After this operation, 267 MB disk space will be freed.
176s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
176s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
176s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
176s Removing libpython3.12t64:arm64 (3.12.9-1) ...
176s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
177s Removing libnsl2:arm64 (1.3.0-3build3) ...
177s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
177s Removing libunwind8:arm64 (1.6.2-3.1) ...
177s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
177s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
179s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
179s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
179s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
179s /etc/kernel/postrm.d/initramfs-tools:
179s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
179s /etc/kernel/postrm.d/zz-flash-kernel:
179s flash-kernel: Kernel 6.11.0-8-generic has been removed.
179s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
180s /etc/kernel/postrm.d/zz-update-grub:
180s Sourcing file `/etc/default/grub'
180s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
180s Generating grub configuration file ...
180s Found linux image: /boot/vmlinuz-6.14.0-10-generic
180s Found initrd image: /boot/initrd.img-6.14.0-10-generic
180s Warning: os-prober will not be executed to detect other bootable partitions.
180s Systems on them will not be added to the GRUB boot configuration.
180s Check GRUB_DISABLE_OS_PROBER documentation entry.
180s Adding boot menu entry for UEFI Firmware Settings ...
180s done
180s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
181s Processing triggers for libc-bin (2.41-1ubuntu1) ...
181s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
181s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
181s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
181s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
181s autopkgtest [15:09:05]: upgrading testbed (apt dist-upgrade and autopurge)
181s Reading package lists...
182s Building dependency tree...
182s Reading state information...
182s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
182s Starting 2 pkgProblemResolver with broken count: 0
182s Done
183s Entering ResolveByKeep
183s 
184s Calculating upgrade...
184s The following packages will be upgraded:
184s   libc-bin libc-dev-bin libc6 libc6-dev locales
184s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
184s Need to get 9530 kB of archives.
184s After this operation, 0 B of additional disk space will be used.
184s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
186s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
186s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
189s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
190s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
194s Preconfiguring packages ...
194s Fetched 9530 kB in 10s (952 kB/s)
195s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
195s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
195s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
195s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
195s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
195s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
195s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
195s Setting up libc6:arm64 (2.41-1ubuntu2) ...
195s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
195s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
195s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
195s Setting up libc-bin (2.41-1ubuntu2) ...
195s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
195s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
195s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
196s Setting up locales (2.41-1ubuntu2) ...
196s Generating locales (this might take a while)...
198s   en_US.UTF-8... done
198s Generation complete.
198s Setting up libc-dev-bin (2.41-1ubuntu2) ...
198s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
198s Processing triggers for man-db (2.13.0-1) ...
199s Processing triggers for systemd (257.3-1ubuntu3) ...
200s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s Starting pkgProblemResolver with broken count: 0
201s Starting 2 pkgProblemResolver with broken count: 0
201s Done
201s Solving dependencies...
202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
202s autopkgtest [15:09:26]: rebooting testbed after setup commands that affected boot
225s autopkgtest [15:09:49]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
228s autopkgtest [15:09:52]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ebseq
231s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (dsc) [2190 B]
231s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (tar) [1124 kB]
231s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (diff) [5148 B]
231s gpgv: Signature made Sat Jan 11 16:40:41 2025 UTC
231s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
231s gpgv:                issuer "crusoe@debian.org"
231s gpgv: Can't check signature: No public key
231s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ebseq_2.4.0-2.dsc: no acceptable signature found
231s autopkgtest [15:09:55]: testing package r-bioc-ebseq version 2.4.0-2
232s autopkgtest [15:09:56]: build not needed
234s autopkgtest [15:09:58]: test pkg-r-autopkgtest: preparing testbed
234s Reading package lists...
234s Building dependency tree...
234s Reading state information...
234s Starting pkgProblemResolver with broken count: 0
235s Starting 2 pkgProblemResolver with broken count: 0
235s Done
235s The following NEW packages will be installed:
235s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
235s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
235s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
235s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
235s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
235s   libasan8 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
235s   libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
235s   libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3
235s   libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0
235s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
235s   liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
235s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
235s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
235s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
235s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
235s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
235s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler pkg-r-autopkgtest
235s   pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-ebseq
235s   r-cran-bh r-cran-bitops r-cran-blockmodeling r-cran-brio r-cran-callr
235s   r-cran-catools r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
235s   r-cran-digest r-cran-evaluate r-cran-fs r-cran-gdata r-cran-glue
235s   r-cran-gplots r-cran-gtools r-cran-jsonlite r-cran-kernsmooth r-cran-lattice
235s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
235s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
235s   r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rcppeigen
235s   r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr
235s   unzip x11-common xdg-utils zip zlib1g-dev
236s 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded.
236s Need to get 166 MB of archives.
236s After this operation, 629 MB of additional disk space will be used.
236s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
237s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
237s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
249s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
249s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
249s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
249s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
249s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
249s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
249s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
252s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
254s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
257s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
258s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
260s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
262s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
284s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
284s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
284s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
284s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
287s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
299s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
300s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
300s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
300s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
300s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
300s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
300s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
301s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
301s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
301s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
301s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
302s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
302s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
315s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
315s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
315s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
315s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
315s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
315s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
315s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB]
328s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
328s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
328s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
328s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
328s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
328s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
328s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
329s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
329s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
329s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
329s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
329s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
329s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
329s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
329s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
344s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
344s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
344s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
344s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
344s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
344s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
346s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
351s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
351s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
352s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
352s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
352s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
352s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
352s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
352s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
352s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
352s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
352s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
352s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
352s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
353s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
353s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
354s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
354s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
354s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
354s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
354s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
355s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
355s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
355s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
355s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
355s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
355s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
356s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
356s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
357s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
357s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
357s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
383s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
383s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
383s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
383s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
383s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
383s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
383s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
383s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
384s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
384s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
385s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
389s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blockmodeling arm64 1.1.5-1 [425 kB]
390s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB]
390s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB]
390s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-catools arm64 1.18.3-1 [203 kB]
390s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
391s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-26-1 [93.3 kB]
391s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gdata all 3.0.1-1 [491 kB]
392s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gplots all 3.2.0-1 [484 kB]
392s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
392s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB]
392s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
392s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB]
393s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
393s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
394s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
395s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
395s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
395s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
395s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
395s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
397s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
397s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
397s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
398s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
398s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
398s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
398s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
398s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
398s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
398s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
399s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB]
400s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
401s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
401s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
403s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB]
404s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
404s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ebseq arm64 2.4.0-2 [1283 kB]
406s Preconfiguring packages ...
406s Fetched 166 MB in 2min 50s (975 kB/s)
406s Selecting previously unselected package libisl23:arm64.
406s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
406s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
406s Unpacking libisl23:arm64 (0.27-1) ...
406s Selecting previously unselected package libmpc3:arm64.
406s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
406s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
406s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
406s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
406s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
406s Selecting previously unselected package cpp-14.
406s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
406s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
406s Selecting previously unselected package cpp-aarch64-linux-gnu.
406s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
406s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
406s Selecting previously unselected package cpp.
406s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
406s Unpacking cpp (4:14.2.0-1ubuntu1) ...
406s Selecting previously unselected package libcc1-0:arm64.
406s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
406s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
406s Selecting previously unselected package libgomp1:arm64.
406s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
406s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
406s Selecting previously unselected package libitm1:arm64.
406s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ...
406s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
406s Selecting previously unselected package libasan8:arm64.
407s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ...
407s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
407s Selecting previously unselected package liblsan0:arm64.
407s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
407s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
407s Selecting previously unselected package libtsan2:arm64.
407s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
407s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
407s Selecting previously unselected package libubsan1:arm64.
407s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
407s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
407s Selecting previously unselected package libhwasan0:arm64.
407s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
407s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
407s Selecting previously unselected package libgcc-14-dev:arm64.
407s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
407s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
407s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
407s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
407s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
407s Selecting previously unselected package gcc-14.
407s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
407s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
407s Selecting previously unselected package gcc-aarch64-linux-gnu.
407s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
407s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
407s Selecting previously unselected package gcc.
407s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
407s Unpacking gcc (4:14.2.0-1ubuntu1) ...
407s Selecting previously unselected package libstdc++-14-dev:arm64.
407s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
407s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
408s Selecting previously unselected package g++-14-aarch64-linux-gnu.
408s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
408s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
408s Selecting previously unselected package g++-14.
408s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
408s Unpacking g++-14 (14.2.0-17ubuntu3) ...
408s Selecting previously unselected package g++-aarch64-linux-gnu.
408s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
408s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
408s Selecting previously unselected package g++.
408s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
408s Unpacking g++ (4:14.2.0-1ubuntu1) ...
408s Selecting previously unselected package build-essential.
408s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ...
408s Unpacking build-essential (12.10ubuntu1) ...
408s Selecting previously unselected package dctrl-tools.
408s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
408s Unpacking dctrl-tools (2.24-3build3) ...
408s Selecting previously unselected package fonts-dejavu-mono.
408s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
408s Unpacking fonts-dejavu-mono (2.37-8) ...
408s Selecting previously unselected package fonts-dejavu-core.
408s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
408s Unpacking fonts-dejavu-core (2.37-8) ...
408s Selecting previously unselected package fontconfig-config.
408s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
408s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
409s Selecting previously unselected package libfontconfig1:arm64.
409s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
409s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
409s Selecting previously unselected package fontconfig.
409s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
409s Unpacking fontconfig (2.15.0-2ubuntu1) ...
409s Selecting previously unselected package libgfortran5:arm64.
409s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
409s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
409s Selecting previously unselected package libgfortran-14-dev:arm64.
409s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
409s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
409s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
409s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
409s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
409s Selecting previously unselected package gfortran-14.
409s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
409s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
409s Selecting previously unselected package gfortran-aarch64-linux-gnu.
409s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
409s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
409s Selecting previously unselected package gfortran.
409s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
409s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
409s Selecting previously unselected package icu-devtools.
409s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ...
409s Unpacking icu-devtools (76.1-1ubuntu2) ...
409s Selecting previously unselected package libblas3:arm64.
409s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ...
409s Unpacking libblas3:arm64 (3.12.1-2) ...
409s Selecting previously unselected package libblas-dev:arm64.
409s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ...
409s Unpacking libblas-dev:arm64 (3.12.1-2) ...
409s Selecting previously unselected package libboost1.83-dev:arm64.
409s Preparing to unpack .../040-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ...
409s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ...
411s Selecting previously unselected package libboost-dev:arm64.
411s Preparing to unpack .../041-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
411s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
411s Selecting previously unselected package libbz2-dev:arm64.
411s Preparing to unpack .../042-libbz2-dev_1.0.8-6_arm64.deb ...
411s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
411s Selecting previously unselected package libpixman-1-0:arm64.
411s Preparing to unpack .../043-libpixman-1-0_0.44.0-3_arm64.deb ...
411s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
411s Selecting previously unselected package libxcb-render0:arm64.
411s Preparing to unpack .../044-libxcb-render0_1.17.0-2_arm64.deb ...
411s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
411s Selecting previously unselected package libxcb-shm0:arm64.
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417s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
417s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
417s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
417s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
417s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
417s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
417s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
417s Setting up libxcb-render0:arm64 (1.17.0-2) ...
417s Setting up unzip (6.0-28ubuntu6) ...
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417s Setting up libdeflate0:arm64 (1.23-1) ...
417s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
417s Setting up libreadline-dev:arm64 (8.2-6) ...
417s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
417s Setting up libpcre2-16-0:arm64 (10.45-1) ...
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417s Setting up libpcre2-32-0:arm64 (10.45-1) ...
417s Setting up libblas3:arm64 (3.12.1-2) ...
417s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
417s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
417s Setting up libpkgconf3:arm64 (1.8.1-4) ...
417s Setting up fonts-dejavu-mono (2.37-8) ...
417s Setting up libmpc3:arm64 (1.3.1-1build2) ...
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417s Setting up icu-devtools (76.1-1ubuntu2) ...
417s Setting up fonts-dejavu-core (2.37-8) ...
417s Setting up pkgconf-bin (1.8.1-4) ...
417s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
417s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libwebp7:arm64 (1.5.0-0.1) ...
417s Setting up liblzma-dev:arm64 (5.6.4-1) ...
417s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
417s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
417s Setting up libpcre2-posix3:arm64 (10.45-1) ...
417s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
417s Setting up libthai-data (0.1.29-2build1) ...
417s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
417s Setting up libpaper2:arm64 (2.2.5-0.3) ...
417s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libisl23:arm64 (0.27-1) ...
417s Setting up libdeflate-dev:arm64 (1.23-1) ...
417s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
417s Setting up xdg-utils (1.2.1-2ubuntu1) ...
417s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
417s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
417s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libblas-dev:arm64 (3.12.1-2) ...
417s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
417s Setting up dctrl-tools (2.24-3build3) ...
417s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
417s Setting up libbz2-dev:arm64 (1.0.8-6) ...
417s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
417s Setting up libice6:arm64 (2:1.1.1-1) ...
417s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
417s Setting up liblapack3:arm64 (3.12.1-2) ...
417s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
417s Setting up libpcre2-dev:arm64 (10.45-1) ...
417s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
417s Setting up libpng-dev:arm64 (1.6.47-1) ...
417s Setting up libpaper-utils (2.2.5-0.3) ...
417s Setting up pkgconf:arm64 (1.8.1-4) ...
417s Setting up libthai0:arm64 (0.1.29-2build1) ...
417s Setting up liblapack-dev:arm64 (3.12.1-2) ...
417s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
417s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
417s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
417s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
417s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
417s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
417s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
417s Setting up libsm6:arm64 (2:1.2.4-1) ...
417s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
417s Setting up fontconfig (2.15.0-2ubuntu1) ...
419s Regenerating fonts cache... done.
419s Setting up libxft2:arm64 (2.3.6-1build1) ...
419s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ...
419s Setting up libtk8.6:arm64 (8.6.16-1) ...
420s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
420s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
420s Setting up libcairo2:arm64 (1.18.2-2) ...
420s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
420s Setting up cpp-14 (14.2.0-17ubuntu3) ...
420s Setting up cpp (4:14.2.0-1ubuntu1) ...
420s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ...
420s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
420s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
420s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
420s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
420s Setting up gcc-14 (14.2.0-17ubuntu3) ...
420s Setting up r-base-core (4.4.3-1) ...
420s Creating config file /etc/R/Renviron with new version
420s Setting up r-cran-crayon (1.5.3-1) ...
420s Setting up r-cran-lattice (0.22-6-1) ...
420s Setting up r-cran-ps (1.9.0-1) ...
420s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
420s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up g++-14 (14.2.0-17ubuntu3) ...
420s Setting up r-cran-r6 (2.6.1-1) ...
420s Setting up r-cran-pkgkitten (0.2.4-1) ...
420s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
420s Setting up r-cran-magrittr (2.0.3-1) ...
420s Setting up r-cran-littler (0.3.20-2) ...
420s Setting up r-cran-bh (1.84.0-1) ...
420s Setting up r-cran-fs (1.6.5+dfsg-1) ...
420s Setting up r-cran-rcpp (1.0.14-1) ...
420s Setting up r-cran-brio (1.1.5-1) ...
420s Setting up r-cran-diffobj (0.3.5-1) ...
420s Setting up r-bioc-biocgenerics (0.52.0-2) ...
420s Setting up r-cran-rlang (1.1.5-1) ...
420s Setting up littler (0.3.20-2) ...
420s Setting up r-cran-withr (3.0.2+dfsg-1) ...
420s Setting up r-cran-processx (3.8.6-1) ...
420s Setting up r-cran-praise (1.0.0-4build1) ...
420s Setting up r-cran-digest (0.6.37-1) ...
420s Setting up r-cran-evaluate (1.0.3-1) ...
420s Setting up r-cran-mass (7.3-64-1) ...
420s Setting up r-cran-gtools (3.9.5-1) ...
420s Setting up r-cran-glue (1.8.0-1) ...
420s Setting up r-cran-cli (3.6.4-1) ...
420s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
420s Setting up r-cran-bitops (1.0-9-1) ...
420s Setting up r-cran-rprojroot (2.0.4-2) ...
420s Setting up gcc (4:14.2.0-1ubuntu1) ...
420s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
420s Setting up r-cran-waldo (0.6.1-2) ...
420s Setting up r-cran-matrix (1.7-3-1) ...
420s Setting up r-cran-kernsmooth (2.23-26-1) ...
420s Setting up r-cran-blockmodeling (1.1.5-1) ...
420s Setting up g++ (4:14.2.0-1ubuntu1) ...
420s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
420s Setting up build-essential (12.10ubuntu1) ...
420s Setting up r-cran-catools (1.18.3-1) ...
420s Setting up r-cran-gdata (3.0.1-1) ...
420s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
420s Setting up r-cran-callr (3.7.6-1) ...
420s Setting up r-cran-desc (1.4.3-1) ...
420s Setting up gfortran (4:14.2.0-1ubuntu1) ...
420s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
420s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
420s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
420s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
420s Setting up r-cran-pkgbuild (1.4.6-1) ...
420s Setting up r-cran-gplots (3.2.0-1) ...
420s Setting up r-cran-pkgload (1.4.0-1) ...
420s Setting up r-base-dev (4.4.3-1) ...
420s Setting up r-cran-testthat (3.2.3-1) ...
420s Setting up r-bioc-ebseq (2.4.0-2) ...
420s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
420s Processing triggers for libc-bin (2.41-1ubuntu2) ...
420s Processing triggers for man-db (2.13.0-1) ...
421s Processing triggers for install-info (7.1.1-1) ...
423s autopkgtest [15:13:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
423s autopkgtest [15:13:07]: test pkg-r-autopkgtest: [-----------------------
423s Test: Try to load the R library EBSeq
423s 
423s R version 4.4.3 (2025-02-28) -- "Trophy Case"
423s Copyright (C) 2025 The R Foundation for Statistical Computing
423s Platform: aarch64-unknown-linux-gnu
423s 
423s R is free software and comes with ABSOLUTELY NO WARRANTY.
423s You are welcome to redistribute it under certain conditions.
423s Type 'license()' or 'licence()' for distribution details.
423s 
423s R is a collaborative project with many contributors.
423s Type 'contributors()' for more information and
423s 'citation()' on how to cite R or R packages in publications.
423s 
423s Type 'demo()' for some demos, 'help()' for on-line help, or
423s 'help.start()' for an HTML browser interface to help.
423s Type 'q()' to quit R.
423s 
423s > library('EBSeq')
423s Loading required package: blockmodeling
424s To cite package 'blockmodeling' in publications please use package
424s citation and (at least) one of the articles:
424s 
424s   Žiberna, Aleš (2007). Generalized blockmodeling of valued networks.
424s   Social Networks 29(1), 105-126.
424s 
424s   Žiberna, Aleš (2008). Direct and indirect approaches to blockmodeling
424s   of valued networks in terms of regular equivalence. Journal of
424s   Mathematical Sociology 32(1), 57–84.
424s 
424s   Žiberna, Aleš (2014). Blockmodeling of multilevel networks. Social
424s   Networks 39, 46–61. https://doi.org/10.1016/j.socnet.2014.04.002.
424s 
424s   Žiberna, Aleš (2023).  Generalized and Classical Blockmodeling of
424s   Valued Networks, R package version 1.1.5.
424s   Cugmas, Marjan (2023).  Generalized and Classical Blockmodeling of
424s   Valued Networks, R package version 1.1.5.
424s 
424s To see these entries in BibTeX format, use 'format(<citation>,
424s bibtex=TRUE)', or 'toBibtex(.)'.
424s Loading required package: gplots
424s 
424s Attaching package: ‘gplots’
424s 
424s The following object is masked from ‘package:stats’:
424s 
424s     lowess
424s 
424s Loading required package: testthat
424s > 
424s > 
424s Other tests are currently unsupported!
424s They will be progressively added.
425s autopkgtest [15:13:09]: test pkg-r-autopkgtest: -----------------------]
425s autopkgtest [15:13:09]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
425s pkg-r-autopkgtest    PASS
426s autopkgtest [15:13:10]: @@@@@@@@@@@@@@@@@@@@ summary
426s pkg-r-autopkgtest    PASS
445s nova [W] Using flock in prodstack6-arm64
445s Creating nova instance adt-plucky-arm64-r-bioc-ebseq-20250315-150604-juju-7f2275-prod-proposed-migration-environment-2-292c7068-ab22-41e3-a1ef-5c8b06a7f65d from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
445s nova [W] Timed out waiting for 71bf9bef-99cf-4286-b339-9b00c778d842 to get deleted.