0s autopkgtest [15:05:01]: starting date and time: 2025-03-15 15:05:01+0000 0s autopkgtest [15:05:01]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:05:01]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f50addzc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-cner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-17.secgroup --name adt-plucky-arm64-r-bioc-cner-20250315-150500-juju-7f2275-prod-proposed-migration-environment-15-43959b4a-6d8d-44d4-9c05-6b5a2144c485 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 185s autopkgtest [15:08:06]: testbed dpkg architecture: arm64 185s autopkgtest [15:08:06]: testbed apt version: 2.9.33 185s autopkgtest [15:08:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 186s autopkgtest [15:08:07]: testbed release detected to be: None 186s autopkgtest [15:08:07]: updating testbed package index (apt update) 187s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 187s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 187s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 187s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 187s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 188s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 188s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 188s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 188s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 188s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 188s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 188s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 188s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 188s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 189s Fetched 1094 kB in 2s (669 kB/s) 189s Reading package lists... 190s + lsb_release --codename --short 190s + RELEASE=plucky 190s + cat 190s + [ plucky != trusty ] 190s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 191s Calculating upgrade... 191s Calculating upgrade... 192s The following packages will be upgraded: 192s python3-jinja2 strace 192s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 192s Need to get 608 kB of archives. 192s After this operation, 11.3 kB of additional disk space will be used. 192s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 192s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 193s Fetched 608 kB in 1s (603 kB/s) 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 193s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 193s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 194s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 194s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 194s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 194s Setting up strace (6.13+ds-1ubuntu1) ... 194s Processing triggers for man-db (2.13.0-1) ... 195s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 195s + /usr/lib/apt/apt-helper analyze-pattern ?true 195s + uname -r 195s + sed s/\./\\./g 195s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 195s + apt list ?obsolete 195s + tail -n+2 195s + cut -d/ -f1 195s + grep -v ^linux-.*6\.14\.0-10-generic.* 195s + obsolete_pkgs=linux-headers-6.11.0-8-generic 195s linux-headers-6.11.0-8 195s linux-image-6.11.0-8-generic 195s linux-modules-6.11.0-8-generic 195s linux-tools-6.11.0-8-generic 195s linux-tools-6.11.0-8 195s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-genericReading package lists... 195s Building dependency tree... linux-tools-6.11.0-8 195s 195s Reading state information... 196s Solving dependencies... 196s The following packages will be REMOVED: 196s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 196s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 196s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 196s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 197s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 197s After this operation, 267 MB disk space will be freed. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 197s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 197s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 197s Removing libpython3.12t64:arm64 (3.12.9-1) ... 197s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 197s Removing libnsl2:arm64 (1.3.0-3build3) ... 197s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 197s Removing libunwind8:arm64 (1.6.2-3.1) ... 197s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 197s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 199s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 199s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 199s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 199s /etc/kernel/postrm.d/initramfs-tools: 199s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 199s /etc/kernel/postrm.d/zz-flash-kernel: 199s flash-kernel: Kernel 6.11.0-8-generic has been removed. 199s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 200s /etc/kernel/postrm.d/zz-update-grub: 200s Sourcing file `/etc/default/grub' 200s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 200s Generating grub configuration file ... 200s Found linux image: /boot/vmlinuz-6.14.0-10-generic 200s Found initrd image: /boot/initrd.img-6.14.0-10-generic 200s Warning: os-prober will not be executed to detect other bootable partitions. 200s Systems on them will not be added to the GRUB boot configuration. 200s Check GRUB_DISABLE_OS_PROBER documentation entry. 200s Adding boot menu entry for UEFI Firmware Settings ... 200s done 200s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 201s Processing triggers for libc-bin (2.41-1ubuntu1) ... 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 201s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 201s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 201s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 201s + grep -q trusty /etc/lsb-release 201s + [ ! -d /usr/share/doc/unattended-upgrades ] 201s + [ ! -d /usr/share/doc/lxd ] 201s + [ ! -d /usr/share/doc/lxd-client ] 201s + [ ! -d /usr/share/doc/snapd ] 201s + type iptables 201s + cat 201s + chmod 755 /etc/rc.local 201s + . /etc/rc.local 201s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 201s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 201s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 201s + uname -m 201s + [ aarch64 = ppc64le ] 201s + [ -d /run/systemd/system ] 201s + systemd-detect-virt --quiet --vm 201s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 201s + cat 201s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 201s + echo COMPRESS=lz4 201s autopkgtest [15:08:22]: upgrading testbed (apt dist-upgrade and autopurge) 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 203s Entering ResolveByKeep 203s 204s Calculating upgrade... 204s The following packages will be upgraded: 204s libc-bin libc-dev-bin libc6 libc6-dev locales 204s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 9530 kB of archives. 204s After this operation, 0 B of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 206s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 206s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 209s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 210s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 215s Preconfiguring packages ... 215s Fetched 9530 kB in 10s (946 kB/s) 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 215s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up libc6:arm64 (2.41-1ubuntu2) ... 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 216s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 216s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 216s Setting up libc-bin (2.41-1ubuntu2) ... 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 216s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 216s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 216s Setting up locales (2.41-1ubuntu2) ... 217s Generating locales (this might take a while)... 219s en_US.UTF-8... done 219s Generation complete. 219s Setting up libc-dev-bin (2.41-1ubuntu2) ... 219s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 219s Processing triggers for man-db (2.13.0-1) ... 220s Processing triggers for systemd (257.3-1ubuntu3) ... 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 222s Solving dependencies... 223s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s autopkgtest [15:08:44]: rebooting testbed after setup commands that affected boot 248s autopkgtest [15:09:09]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 250s autopkgtest [15:09:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cner 260s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (dsc) [2436 B] 260s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (tar) [7750 kB] 260s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (diff) [5280 B] 261s gpgv: Signature made Mon Jan 13 20:01:02 2025 UTC 261s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 261s gpgv: issuer "crusoe@debian.org" 261s gpgv: Can't check signature: No public key 261s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.42.0+dfsg-2.dsc: no acceptable signature found 261s autopkgtest [15:09:22]: testing package r-bioc-cner version 1.42.0+dfsg-2 262s autopkgtest [15:09:23]: build not needed 266s autopkgtest [15:09:27]: test pkg-r-autopkgtest: preparing testbed 266s Reading package lists... 266s Building dependency tree... 266s Reading state information... 267s Starting pkgProblemResolver with broken count: 0 267s Starting 2 pkgProblemResolver with broken count: 0 267s Done 268s The following NEW packages will be installed: 268s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 268s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 268s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 268s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 268s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 268s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 268s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 268s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 268s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 268s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 268s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 268s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 268s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 268s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 268s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 268s libjs-popper.js libjs-prettify libjs-sifter.js 268s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 268s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 268s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 268s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 268s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 268s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 268s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 268s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 268s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 268s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 268s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 268s r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 268s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 268s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 268s r-bioc-biovizbase r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray 268s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 268s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 268s r-bioc-go.db r-bioc-gviz r-bioc-iranges r-bioc-keggrest 268s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-pwalign r-bioc-rhtslib 268s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 268s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 268s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 268s r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh 268s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 268s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 268s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 268s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 268s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 268s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 268s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 268s r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr 268s r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options 268s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 268s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 268s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp 268s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 268s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 268s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 268s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 268s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 268s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 268s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 268s r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits 268s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 268s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 268s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 268s r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 268s r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sass 268s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 268s r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble 268s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 268s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo 268s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 268s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 268s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 268s 0 upgraded, 341 newly installed, 0 to remove and 0 not upgraded. 268s Need to get 523 MB of archives. 268s After this operation, 1550 MB of additional disk space will be used. 268s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 269s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 269s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 280s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 280s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 280s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 280s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 280s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 280s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 280s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 284s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 285s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 290s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 290s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 290s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 293s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 317s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 317s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 317s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 317s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 320s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 332s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 332s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 332s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 332s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 332s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 332s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 333s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 334s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 334s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 334s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 334s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 335s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 335s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 339s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 342s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 343s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 343s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 355s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 355s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 355s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 355s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 355s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 355s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 355s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 355s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 355s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 355s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 355s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 366s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 366s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 366s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 366s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 366s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 366s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 367s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 367s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 367s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 367s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 367s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 367s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 368s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 368s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 368s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 382s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 382s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 383s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 383s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 383s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 383s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 383s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 383s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 384s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 384s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 384s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 384s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 385s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 385s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 385s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 385s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 385s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 385s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 385s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 385s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 385s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 385s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 388s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 393s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 393s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 394s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 394s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 394s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 394s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 394s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 395s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 395s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 395s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 395s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 395s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 395s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 395s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 395s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 396s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 396s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 397s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 398s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 398s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 398s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 398s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 398s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 398s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 398s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 399s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 400s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 400s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 400s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 400s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 400s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 400s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 400s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 401s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 402s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 402s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 402s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 402s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 402s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 402s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 402s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 402s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 402s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 430s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 430s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 430s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 430s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 430s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 430s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 431s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 455s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 455s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 455s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 455s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 455s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 455s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 455s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 456s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 457s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 459s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 460s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 461s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 462s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 462s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 464s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 464s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 464s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 465s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 465s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 465s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 466s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 466s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 466s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 466s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 466s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 466s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 467s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 467s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 467s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 467s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 467s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 467s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 468s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 468s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 468s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 468s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 468s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 469s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 469s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 479s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 482s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 482s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 491s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 491s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 496s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 497s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 497s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 498s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 500s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 500s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 501s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 501s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 501s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 501s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 501s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 502s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 502s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 502s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 503s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 504s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 504s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 505s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 505s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 506s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 507s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 507s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 507s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 507s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 508s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 508s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 508s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 508s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 508s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 508s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 508s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 509s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 509s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 509s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 510s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 510s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 510s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 510s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 510s Get:220 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 515s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 516s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 516s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 516s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 516s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 517s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 520s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 521s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 522s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 522s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 522s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 524s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 524s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 524s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 524s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 524s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 525s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 525s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 527s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 528s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 530s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 530s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 530s Get:243 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 530s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 537s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 557s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 558s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 624s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 624s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 624s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 624s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 625s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 625s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr2 all 1.1.1-1 [752 kB] 626s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB] 626s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 626s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 627s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 627s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 629s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 630s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 630s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 630s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 630s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 631s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 632s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 633s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 638s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 639s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 642s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 644s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 648s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 648s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 679s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rpart arm64 4.1.24-1 [665 kB] 679s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nnet arm64 7.3-20-1 [113 kB] 679s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-foreign arm64 0.8.88-1 [243 kB] 679s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 679s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 679s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 679s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-checkmate arm64 2.3.2-1 [706 kB] 679s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 679s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 679s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltable all 2.4.3-1 [388 kB] 679s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 679s Get:284 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 679s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-chron arm64 2.3-62-1 [188 kB] 679s Get:286 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 679s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 679s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 679s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 679s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 679s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-acepack arm64 1.6.1-1 [84.7 kB] 679s Get:292 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hmisc arm64 5.2-2-1 [3582 kB] 679s Get:293 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 679s Get:294 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 679s Get:295 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 679s Get:296 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 679s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 679s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 679s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 679s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 679s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 679s Get:302 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 679s Get:303 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 679s Get:304 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 679s Get:305 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 679s Get:306 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 679s Get:307 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 683s Get:308 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 683s Get:309 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 684s Get:310 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 688s Get:311 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 690s Get:312 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 697s Get:313 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 697s Get:314 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biovizbase arm64 1.54.0-2 [2857 kB] 697s Get:315 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.2.0-2 [752 kB] 697s Get:316 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 697s Get:317 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 697s Get:318 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 697s Get:319 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 697s Get:320 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 697s Get:321 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 697s Get:322 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pracma all 2.4.4-3 [1710 kB] 697s Get:323 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-powerlaw all 1.0.0-1 [3725 kB] 699s Get:324 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-go.db all 3.20.0-2 [16.5 MB] 717s Get:325 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 717s Get:326 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.oo all 1.27.0-1 [979 kB] 717s Get:327 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.utils all 2.13.0-1 [1423 kB] 717s Get:328 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-cner arm64 1.42.0+dfsg-2 [8991 kB] 717s Get:329 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 720s Get:330 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 720s Get:331 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 721s Get:332 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 721s Get:333 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 721s Get:334 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 721s Get:335 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 723s Get:336 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 723s Get:337 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 723s Get:338 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 723s Get:339 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 723s Get:340 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 723s Get:341 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 725s Preconfiguring packages ... 725s Fetched 523 MB in 7min 36s (1147 kB/s) 725s Selecting previously unselected package libisl23:arm64. 725s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 725s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 725s Unpacking libisl23:arm64 (0.27-1) ... 725s Selecting previously unselected package libmpc3:arm64. 725s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 725s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 725s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 725s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 725s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 726s Selecting previously unselected package cpp-14. 726s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 726s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 726s Selecting previously unselected package cpp-aarch64-linux-gnu. 726s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 726s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 726s Selecting previously unselected package cpp. 726s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 726s Unpacking cpp (4:14.2.0-1ubuntu1) ... 726s Selecting previously unselected package libcc1-0:arm64. 726s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libgomp1:arm64. 726s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libitm1:arm64. 726s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libasan8:arm64. 726s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package liblsan0:arm64. 726s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libtsan2:arm64. 726s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libubsan1:arm64. 726s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libhwasan0:arm64. 726s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 726s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 726s Selecting previously unselected package libgcc-14-dev:arm64. 726s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 726s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 726s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 726s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 726s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 727s Selecting previously unselected package gcc-14. 727s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 727s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 727s Selecting previously unselected package gcc-aarch64-linux-gnu. 727s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 727s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 727s Selecting previously unselected package gcc. 727s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 727s Unpacking gcc (4:14.2.0-1ubuntu1) ... 727s Selecting previously unselected package libstdc++-14-dev:arm64. 727s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 727s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 727s Selecting previously unselected package g++-14-aarch64-linux-gnu. 727s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 727s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 727s Selecting previously unselected package g++-14. 727s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 727s Unpacking g++-14 (14.2.0-17ubuntu3) ... 727s Selecting previously unselected package g++-aarch64-linux-gnu. 727s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 727s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 727s Selecting previously unselected package g++. 727s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 727s Unpacking g++ (4:14.2.0-1ubuntu1) ... 727s Selecting previously unselected package build-essential. 727s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 727s Unpacking build-essential (12.10ubuntu1) ... 727s Selecting previously unselected package dctrl-tools. 727s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 727s Unpacking dctrl-tools (2.24-3build3) ... 728s Selecting previously unselected package fonts-dejavu-mono. 728s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 728s Unpacking fonts-dejavu-mono (2.37-8) ... 728s Selecting previously unselected package fonts-dejavu-core. 728s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 728s Unpacking fonts-dejavu-core (2.37-8) ... 728s Selecting previously unselected package fontconfig-config. 728s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 728s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 728s Selecting previously unselected package libfontconfig1:arm64. 728s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 728s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 728s Selecting previously unselected package fontconfig. 728s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 728s Unpacking fontconfig (2.15.0-2ubuntu1) ... 728s Selecting previously unselected package fonts-font-awesome. 728s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 728s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 728s Selecting previously unselected package fonts-glyphicons-halflings. 728s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 728s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 728s Selecting previously unselected package fonts-lmodern. 728s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 728s Unpacking fonts-lmodern (2.005-1) ... 728s Selecting previously unselected package fonts-mathjax. 728s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 728s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 728s Selecting previously unselected package libgfortran5:arm64. 728s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 728s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 728s Selecting previously unselected package libgfortran-14-dev:arm64. 728s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 728s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 728s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 728s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 728s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 729s Selecting previously unselected package gfortran-14. 729s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 729s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 729s Selecting previously unselected package gfortran-aarch64-linux-gnu. 729s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 729s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 729s Selecting previously unselected package gfortran. 729s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 729s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 729s Selecting previously unselected package icu-devtools. 729s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 729s Unpacking icu-devtools (76.1-1ubuntu2) ... 729s Selecting previously unselected package javascript-common. 729s Preparing to unpack .../042-javascript-common_12_all.deb ... 729s Unpacking javascript-common (12) ... 729s Selecting previously unselected package libio-string-perl. 729s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 729s Unpacking libio-string-perl (1.08-4) ... 729s Selecting previously unselected package liblatex-tounicode-perl. 729s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 729s Unpacking liblatex-tounicode-perl (0.55-1) ... 729s Selecting previously unselected package libbibtex-parser-perl. 729s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 729s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 729s Selecting previously unselected package libblas3:arm64. 729s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 729s Unpacking libblas3:arm64 (3.12.1-2) ... 729s Selecting previously unselected package libblas-dev:arm64. 729s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 729s Unpacking libblas-dev:arm64 (3.12.1-2) ... 729s Selecting previously unselected package libboost1.83-dev:arm64. 729s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 729s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 731s Selecting previously unselected package libboost-dev:arm64. 731s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 731s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 731s Selecting previously unselected package libbz2-dev:arm64. 731s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 733s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 733s Selecting previously unselected package libpixman-1-0:arm64. 733s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 733s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 733s Selecting previously unselected package libxcb-render0:arm64. 733s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 733s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 733s Selecting previously unselected package libxcb-shm0:arm64. 733s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 733s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 733s Selecting previously unselected package libxrender1:arm64. 733s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 733s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 733s Selecting previously unselected package libcairo2:arm64. 733s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 733s Unpacking libcairo2:arm64 (1.18.2-2) ... 733s Selecting previously unselected package libdatrie1:arm64. 733s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 733s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 733s Selecting previously unselected package libdeflate0:arm64. 733s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 733s Unpacking libdeflate0:arm64 (1.23-1) ... 733s Selecting previously unselected package libdeflate-dev:arm64. 733s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 733s Unpacking libdeflate-dev:arm64 (1.23-1) ... 733s Selecting previously unselected package libgraphite2-3:arm64. 733s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 733s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 733s Selecting previously unselected package libharfbuzz0b:arm64. 733s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 733s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 733s Selecting previously unselected package x11-common. 733s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 733s Unpacking x11-common (1:7.7+23ubuntu3) ... 733s Selecting previously unselected package libice6:arm64. 733s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 733s Unpacking libice6:arm64 (2:1.1.1-1) ... 733s Selecting previously unselected package libicu-dev:arm64. 733s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 733s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 733s Selecting previously unselected package libjpeg-turbo8:arm64. 733s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 733s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 733s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 733s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 733s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 733s Selecting previously unselected package libjpeg8:arm64. 733s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 733s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 733s Selecting previously unselected package libjpeg8-dev:arm64. 733s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 733s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 733s Selecting previously unselected package libjpeg-dev:arm64. 733s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 733s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 733s Selecting previously unselected package libjs-bootstrap. 733s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 733s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 733s Selecting previously unselected package libjs-popper.js. 733s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 733s Unpacking libjs-popper.js (1.16.1+ds-6) ... 733s Selecting previously unselected package libjs-bootstrap4. 733s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 733s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 733s Selecting previously unselected package libjs-d3. 733s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 733s Unpacking libjs-d3 (3.5.17-4) ... 733s Selecting previously unselected package libjs-es5-shim. 733s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 733s Unpacking libjs-es5-shim (4.6.7-2) ... 733s Selecting previously unselected package libjs-highlight.js. 733s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 733s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 733s Selecting previously unselected package libjs-jquery. 733s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 733s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 733s Selecting previously unselected package libjs-jquery-datatables. 733s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 733s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 733s Selecting previously unselected package libjs-sifter.js. 733s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 733s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 733s Selecting previously unselected package libjs-microplugin.js. 733s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 733s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 733s Selecting previously unselected package libjs-jquery-selectize.js. 733s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 733s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 733s Selecting previously unselected package libjs-jquery-ui. 733s Preparing to unpack .../080-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 733s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 733s Selecting previously unselected package libjs-json. 733s Preparing to unpack .../081-libjs-json_0~20221030+~1.0.8-1_all.deb ... 733s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 733s Selecting previously unselected package libjs-lunr. 733s Preparing to unpack .../082-libjs-lunr_2.3.9~dfsg-2_all.deb ... 733s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 733s Selecting previously unselected package libjs-prettify. 733s Preparing to unpack .../083-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 733s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 733s Selecting previously unselected package libkpathsea6:arm64. 733s Preparing to unpack .../084-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 733s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 733s Selecting previously unselected package liblapack3:arm64. 733s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 733s Unpacking liblapack3:arm64 (3.12.1-2) ... 733s Selecting previously unselected package liblapack-dev:arm64. 733s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 733s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 733s Selecting previously unselected package liblerc4:arm64. 733s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 733s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 733s Selecting previously unselected package liblua5.4-0:arm64. 733s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 733s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 733s Selecting previously unselected package libmpfi0:arm64. 733s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 733s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 733s Selecting previously unselected package libncurses-dev:arm64. 733s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 733s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 734s Selecting previously unselected package libthai-data. 734s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 734s Unpacking libthai-data (0.1.29-2build1) ... 734s Selecting previously unselected package libthai0:arm64. 734s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 734s Unpacking libthai0:arm64 (0.1.29-2build1) ... 734s Selecting previously unselected package libpango-1.0-0:arm64. 735s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 735s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 735s Selecting previously unselected package libpangoft2-1.0-0:arm64. 735s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 735s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 735s Selecting previously unselected package libpangocairo-1.0-0:arm64. 735s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 735s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 735s Selecting previously unselected package libpaper2:arm64. 735s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 735s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 735s Selecting previously unselected package libpaper-utils. 735s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 735s Unpacking libpaper-utils (2.2.5-0.3) ... 735s Selecting previously unselected package libpcre2-16-0:arm64. 735s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 735s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 735s Selecting previously unselected package libpcre2-32-0:arm64. 735s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 735s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 735s Selecting previously unselected package libpcre2-posix3:arm64. 735s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 735s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 735s Selecting previously unselected package libpcre2-dev:arm64. 735s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 735s Unpacking libpcre2-dev:arm64 (10.45-1) ... 735s Selecting previously unselected package libpkgconf3:arm64. 735s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 735s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 735s Selecting previously unselected package zlib1g-dev:arm64. 735s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 735s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 735s Selecting previously unselected package libpng-dev:arm64. 735s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 735s Unpacking libpng-dev:arm64 (1.6.47-1) ... 735s Selecting previously unselected package libpotrace0:arm64. 735s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 735s Unpacking libpotrace0:arm64 (1.16-2build1) ... 735s Selecting previously unselected package libptexenc1:arm64. 735s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 735s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 735s Selecting previously unselected package libreadline-dev:arm64. 735s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 735s Unpacking libreadline-dev:arm64 (8.2-6) ... 735s Selecting previously unselected package libsharpyuv0:arm64. 735s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 735s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 735s Selecting previously unselected package libsm6:arm64. 735s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 735s Unpacking libsm6:arm64 (2:1.2.4-1) ... 735s Selecting previously unselected package libsynctex2:arm64. 735s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 735s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 735s Selecting previously unselected package libtcl8.6:arm64. 735s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 735s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 735s Selecting previously unselected package libteckit0:arm64. 735s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 735s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 735s Selecting previously unselected package libtexlua53-5:arm64. 735s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 735s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 735s Selecting previously unselected package libjbig0:arm64. 735s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 735s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 735s Selecting previously unselected package libwebp7:arm64. 735s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 735s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 735s Selecting previously unselected package libtiff6:arm64. 735s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 735s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 735s Selecting previously unselected package libxft2:arm64. 735s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 735s Unpacking libxft2:arm64 (2.3.6-1build1) ... 735s Selecting previously unselected package libxss1:arm64. 735s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 735s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 735s Selecting previously unselected package libtk8.6:arm64. 735s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 735s Unpacking libtk8.6:arm64 (8.6.16-1) ... 735s Selecting previously unselected package libxt6t64:arm64. 735s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 735s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 735s Selecting previously unselected package libxmu6:arm64. 735s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 735s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 735s Selecting previously unselected package libxpm4:arm64. 735s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 735s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 735s Selecting previously unselected package libxaw7:arm64. 735s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 735s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 735s Selecting previously unselected package libxi6:arm64. 735s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 735s Unpacking libxi6:arm64 (2:1.8.2-1) ... 735s Selecting previously unselected package libzzip-0-13t64:arm64. 735s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 735s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 735s Selecting previously unselected package zip. 735s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 735s Unpacking zip (3.0-14ubuntu2) ... 735s Selecting previously unselected package unzip. 735s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 735s Unpacking unzip (6.0-28ubuntu6) ... 735s Selecting previously unselected package xdg-utils. 735s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 735s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 735s Selecting previously unselected package r-base-core. 735s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 735s Unpacking r-base-core (4.4.3-1) ... 736s Selecting previously unselected package r-cran-littler. 736s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 736s Unpacking r-cran-littler (0.3.20-2) ... 736s Selecting previously unselected package littler. 736s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 736s Unpacking littler (0.3.20-2) ... 736s Selecting previously unselected package node-bootstrap-sass. 736s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 736s Unpacking node-bootstrap-sass (3.4.3-2) ... 736s Selecting previously unselected package node-html5shiv. 736s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 736s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 736s Selecting previously unselected package node-normalize.css. 736s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 736s Unpacking node-normalize.css (8.0.1-5) ... 736s Selecting previously unselected package pandoc-data. 736s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 736s Unpacking pandoc-data (3.1.11.1-3build1) ... 736s Selecting previously unselected package pandoc. 736s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 736s Unpacking pandoc (3.1.11.1+ds-2) ... 737s Selecting previously unselected package liblzma-dev:arm64. 737s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 737s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 737s Selecting previously unselected package pkgconf-bin. 737s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 737s Unpacking pkgconf-bin (1.8.1-4) ... 737s Selecting previously unselected package pkgconf:arm64. 737s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 737s Unpacking pkgconf:arm64 (1.8.1-4) ... 737s Selecting previously unselected package libtirpc-dev:arm64. 737s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 737s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 737s Selecting previously unselected package r-base-dev. 737s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 737s Unpacking r-base-dev (4.4.3-1) ... 737s Selecting previously unselected package pkg-r-autopkgtest. 737s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 737s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 737s Selecting previously unselected package r-bioc-biocgenerics. 737s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 737s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 737s Selecting previously unselected package r-bioc-biobase. 737s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 737s Unpacking r-bioc-biobase (2.66.0-2) ... 737s Selecting previously unselected package r-bioc-s4vectors. 738s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 738s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 738s Selecting previously unselected package r-bioc-iranges. 738s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_arm64.deb ... 738s Unpacking r-bioc-iranges (2.40.1-2) ... 738s Selecting previously unselected package r-cran-dbi. 738s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 738s Unpacking r-cran-dbi (1.2.3-1) ... 738s Selecting previously unselected package r-cran-bit. 738s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 738s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 738s Selecting previously unselected package r-cran-bit64. 738s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 738s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 738s Selecting previously unselected package r-cran-rlang. 738s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_arm64.deb ... 738s Unpacking r-cran-rlang (1.1.5-1) ... 738s Selecting previously unselected package r-cran-cli. 738s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 738s Unpacking r-cran-cli (3.6.4-1) ... 738s Selecting previously unselected package r-cran-glue. 738s Preparing to unpack .../152-r-cran-glue_1.8.0-1_arm64.deb ... 738s Unpacking r-cran-glue (1.8.0-1) ... 738s Selecting previously unselected package r-cran-lifecycle. 738s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 738s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 738s Selecting previously unselected package r-cran-vctrs. 738s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 738s Unpacking r-cran-vctrs (0.6.5-1) ... 738s Selecting previously unselected package r-cran-blob. 738s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 738s Unpacking r-cran-blob (1.2.4-1) ... 738s Selecting previously unselected package r-cran-fastmap. 738s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ... 738s Unpacking r-cran-fastmap (1.2.0-1) ... 738s Selecting previously unselected package r-cran-cachem. 738s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ... 738s Unpacking r-cran-cachem (1.1.0-1) ... 738s Selecting previously unselected package r-cran-memoise. 738s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 738s Unpacking r-cran-memoise (2.0.1-1) ... 739s Selecting previously unselected package r-cran-pkgconfig. 739s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 739s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 739s Selecting previously unselected package r-cran-plogr. 739s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 739s Unpacking r-cran-plogr (0.2.0-3build1) ... 739s Selecting previously unselected package r-cran-cpp11. 739s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 739s Unpacking r-cran-cpp11 (0.5.2-1) ... 739s Selecting previously unselected package r-cran-rsqlite. 739s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ... 739s Unpacking r-cran-rsqlite (2.3.9-1) ... 739s Selecting previously unselected package r-cran-curl. 739s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 739s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 739s Selecting previously unselected package r-cran-jsonlite. 739s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 739s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 739s Selecting previously unselected package r-cran-mime. 739s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ... 739s Unpacking r-cran-mime (0.12-2) ... 739s Selecting previously unselected package r-cran-sys. 739s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ... 739s Unpacking r-cran-sys (3.4.3-1) ... 739s Selecting previously unselected package r-cran-askpass. 739s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ... 739s Unpacking r-cran-askpass (1.2.1-1) ... 739s Selecting previously unselected package r-cran-openssl. 739s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 739s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 739s Selecting previously unselected package r-cran-r6. 739s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 739s Unpacking r-cran-r6 (2.6.1-1) ... 739s Selecting previously unselected package r-cran-httr. 739s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 739s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 739s Selecting previously unselected package r-cran-png. 739s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ... 739s Unpacking r-cran-png (0.1-8-1build2) ... 739s Selecting previously unselected package r-bioc-zlibbioc. 739s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 739s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 739s Selecting previously unselected package r-bioc-xvector. 739s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 739s Unpacking r-bioc-xvector (0.46.0-2) ... 739s Selecting previously unselected package r-bioc-ucsc.utils. 739s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 739s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 739s Selecting previously unselected package r-bioc-genomeinfodbdata. 739s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 739s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 739s Selecting previously unselected package r-bioc-genomeinfodb. 739s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 739s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 740s Selecting previously unselected package r-cran-crayon. 740s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 740s Unpacking r-cran-crayon (1.5.3-1) ... 740s Selecting previously unselected package r-bioc-biostrings. 740s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 740s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 740s Selecting previously unselected package r-bioc-keggrest. 740s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 740s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 740s Selecting previously unselected package r-bioc-annotationdbi. 740s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 740s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 740s Selecting previously unselected package r-cran-xml. 740s Preparing to unpack .../181-r-cran-xml_3.99-0.18-1_arm64.deb ... 740s Unpacking r-cran-xml (3.99-0.18-1) ... 740s Selecting previously unselected package r-cran-xtable. 740s Preparing to unpack .../182-r-cran-xtable_1%3a1.8-4-2_all.deb ... 740s Unpacking r-cran-xtable (1:1.8-4-2) ... 740s Selecting previously unselected package r-bioc-annotate. 740s Preparing to unpack .../183-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 740s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 740s Selecting previously unselected package r-bioc-genomicranges. 740s Preparing to unpack .../184-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 740s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 740s Selecting previously unselected package r-cran-lazyeval. 740s Preparing to unpack .../185-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 740s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 740s Selecting previously unselected package r-bioc-annotationfilter. 740s Preparing to unpack .../186-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 740s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 740s Selecting previously unselected package r-cran-generics. 740s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 740s Unpacking r-cran-generics (0.1.3-1) ... 740s Selecting previously unselected package r-cran-magrittr. 740s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 740s Unpacking r-cran-magrittr (2.0.3-1) ... 740s Selecting previously unselected package r-cran-utf8. 740s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_arm64.deb ... 740s Unpacking r-cran-utf8 (1.2.4-1) ... 740s Selecting previously unselected package r-cran-pillar. 740s Preparing to unpack .../190-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 740s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 741s Selecting previously unselected package r-cran-fansi. 741s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 741s Unpacking r-cran-fansi (1.0.5-1) ... 741s Selecting previously unselected package r-cran-tibble. 741s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 741s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 741s Selecting previously unselected package r-cran-withr. 741s Preparing to unpack .../193-r-cran-withr_3.0.2+dfsg-1_all.deb ... 741s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 741s Selecting previously unselected package r-cran-tidyselect. 741s Preparing to unpack .../194-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 741s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 741s Selecting previously unselected package r-cran-dplyr. 741s Preparing to unpack .../195-r-cran-dplyr_1.1.4-4_arm64.deb ... 741s Unpacking r-cran-dplyr (1.1.4-4) ... 741s Selecting previously unselected package r-cran-purrr. 741s Preparing to unpack .../196-r-cran-purrr_1.0.4-1_arm64.deb ... 741s Unpacking r-cran-purrr (1.0.4-1) ... 741s Selecting previously unselected package r-cran-stringi. 741s Preparing to unpack .../197-r-cran-stringi_1.8.4-1build1_arm64.deb ... 741s Unpacking r-cran-stringi (1.8.4-1build1) ... 741s Selecting previously unselected package r-cran-stringr. 741s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 741s Unpacking r-cran-stringr (1.5.1-1) ... 741s Selecting previously unselected package r-cran-tidyr. 741s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 741s Unpacking r-cran-tidyr (1.3.1-1) ... 741s Selecting previously unselected package r-cran-dbplyr. 741s Preparing to unpack .../200-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 741s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 741s Selecting previously unselected package r-cran-filelock. 741s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 741s Unpacking r-cran-filelock (1.0.3-1) ... 741s Selecting previously unselected package r-bioc-biocfilecache. 741s Preparing to unpack .../202-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 741s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 741s Selecting previously unselected package r-bioc-biocio. 741s Preparing to unpack .../203-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 741s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 741s Selecting previously unselected package r-cran-formatr. 741s Preparing to unpack .../204-r-cran-formatr_1.14-2_all.deb ... 741s Unpacking r-cran-formatr (1.14-2) ... 741s Selecting previously unselected package r-cran-lambda.r. 741s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 741s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 741s Selecting previously unselected package r-cran-futile.options. 741s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 741s Unpacking r-cran-futile.options (1.0.1-3build1) ... 741s Selecting previously unselected package r-cran-futile.logger. 741s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 741s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 741s Selecting previously unselected package r-cran-snow. 741s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 741s Unpacking r-cran-snow (1:0.4.4-2) ... 742s Selecting previously unselected package r-cran-codetools. 742s Preparing to unpack .../209-r-cran-codetools_0.2-20-1_all.deb ... 742s Unpacking r-cran-codetools (0.2-20-1) ... 742s Selecting previously unselected package r-cran-bh. 742s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 742s Unpacking r-cran-bh (1.84.0-1) ... 742s Selecting previously unselected package r-bioc-biocparallel. 742s Preparing to unpack .../211-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 742s Unpacking r-bioc-biocparallel (1.40.0-2) ... 742s Selecting previously unselected package r-cran-base64enc. 742s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_arm64.deb ... 742s Unpacking r-cran-base64enc (0.1-3-3) ... 742s Selecting previously unselected package r-cran-digest. 742s Preparing to unpack .../213-r-cran-digest_0.6.37-1_arm64.deb ... 742s Unpacking r-cran-digest (0.6.37-1) ... 742s Selecting previously unselected package r-cran-htmltools. 742s Preparing to unpack .../214-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 742s Unpacking r-cran-htmltools (0.5.8.1-1) ... 742s Selecting previously unselected package r-cran-evaluate. 742s Preparing to unpack .../215-r-cran-evaluate_1.0.3-1_all.deb ... 742s Unpacking r-cran-evaluate (1.0.3-1) ... 742s Selecting previously unselected package r-cran-xfun. 742s Preparing to unpack .../216-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 742s Unpacking r-cran-xfun (0.51+dfsg-1) ... 742s Selecting previously unselected package r-cran-highr. 742s Preparing to unpack .../217-r-cran-highr_0.11+dfsg-1_all.deb ... 742s Unpacking r-cran-highr (0.11+dfsg-1) ... 742s Selecting previously unselected package r-cran-yaml. 742s Preparing to unpack .../218-r-cran-yaml_2.3.10-1_arm64.deb ... 742s Unpacking r-cran-yaml (2.3.10-1) ... 742s Selecting previously unselected package libjs-mathjax. 742s Preparing to unpack .../219-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 742s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 743s Selecting previously unselected package r-cran-knitr. 743s Preparing to unpack .../220-r-cran-knitr_1.49+dfsg-1_all.deb ... 743s Unpacking r-cran-knitr (1.49+dfsg-1) ... 743s Selecting previously unselected package r-cran-jquerylib. 744s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 744s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 744s Selecting previously unselected package r-cran-fs. 744s Preparing to unpack .../222-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 744s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 744s Selecting previously unselected package r-cran-rappdirs. 744s Preparing to unpack .../223-r-cran-rappdirs_0.3.3-1_arm64.deb ... 744s Unpacking r-cran-rappdirs (0.3.3-1) ... 744s Selecting previously unselected package r-cran-sass. 744s Preparing to unpack .../224-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 744s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 744s Selecting previously unselected package r-cran-bslib. 744s Preparing to unpack .../225-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 744s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 744s Selecting previously unselected package r-cran-fontawesome. 744s Preparing to unpack .../226-r-cran-fontawesome_0.5.3-1_all.deb ... 744s Unpacking r-cran-fontawesome (0.5.3-1) ... 744s Selecting previously unselected package r-cran-tinytex. 744s Preparing to unpack .../227-r-cran-tinytex_0.56-1_all.deb ... 744s Unpacking r-cran-tinytex (0.56-1) ... 744s Selecting previously unselected package libjs-modernizr. 744s Preparing to unpack .../228-libjs-modernizr_3.13.0-0.1_all.deb ... 744s Unpacking libjs-modernizr (3.13.0-0.1) ... 744s Selecting previously unselected package r-cran-pkgkitten. 744s Preparing to unpack .../229-r-cran-pkgkitten_0.2.4-1_all.deb ... 744s Unpacking r-cran-pkgkitten (0.2.4-1) ... 744s Selecting previously unselected package r-cran-rcpp. 744s Preparing to unpack .../230-r-cran-rcpp_1.0.14-1_arm64.deb ... 744s Unpacking r-cran-rcpp (1.0.14-1) ... 744s Selecting previously unselected package r-cran-later. 744s Preparing to unpack .../231-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 744s Unpacking r-cran-later (1.4.1+dfsg-1) ... 744s Selecting previously unselected package r-cran-promises. 744s Preparing to unpack .../232-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 744s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 744s Selecting previously unselected package r-cran-httpuv. 744s Preparing to unpack .../233-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 744s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 744s Selecting previously unselected package r-cran-sourcetools. 744s Preparing to unpack .../234-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 744s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 744s Selecting previously unselected package r-cran-commonmark. 744s Preparing to unpack .../235-r-cran-commonmark_1.9.2-2_arm64.deb ... 744s Unpacking r-cran-commonmark (1.9.2-2) ... 744s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 744s Preparing to unpack .../236-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 744s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 744s Selecting previously unselected package r-cran-shiny. 744s Preparing to unpack .../237-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 744s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 744s Selecting previously unselected package r-cran-rmarkdown. 744s Preparing to unpack .../238-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 744s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 744s Selecting previously unselected package r-cran-bookdown. 744s Preparing to unpack .../239-r-cran-bookdown_0.42+dfsg-1_all.deb ... 744s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 744s Selecting previously unselected package r-cran-biocmanager. 744s Preparing to unpack .../240-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 744s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 744s Selecting previously unselected package tex-common. 744s Preparing to unpack .../241-tex-common_6.19_all.deb ... 744s Unpacking tex-common (6.19) ... 744s Selecting previously unselected package t1utils. 744s Preparing to unpack .../242-t1utils_1.41-4build3_arm64.deb ... 744s Unpacking t1utils (1.41-4build3) ... 744s Selecting previously unselected package texlive-binaries. 744s Preparing to unpack .../243-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 744s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 745s Selecting previously unselected package texlive-base. 745s Preparing to unpack .../244-texlive-base_2024.20250114-1_all.deb ... 745s Unpacking texlive-base (2024.20250114-1) ... 746s Selecting previously unselected package texlive-latex-base. 746s Preparing to unpack .../245-texlive-latex-base_2024.20250114-1_all.deb ... 746s Unpacking texlive-latex-base (2024.20250114-1) ... 746s Selecting previously unselected package texlive-bibtex-extra. 746s Preparing to unpack .../246-texlive-bibtex-extra_2024.20250114-1_all.deb ... 746s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 749s Selecting previously unselected package r-bioc-biocversion. 749s Preparing to unpack .../247-r-bioc-biocversion_3.20.0-2_all.deb ... 749s Unpacking r-bioc-biocversion (3.20.0-2) ... 749s Selecting previously unselected package r-bioc-biocstyle. 749s Preparing to unpack .../248-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 749s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 749s Selecting previously unselected package r-cran-hms. 749s Preparing to unpack .../249-r-cran-hms_1.1.3-1_all.deb ... 749s Unpacking r-cran-hms (1.1.3-1) ... 749s Selecting previously unselected package r-cran-prettyunits. 749s Preparing to unpack .../250-r-cran-prettyunits_1.2.0-1_all.deb ... 749s Unpacking r-cran-prettyunits (1.2.0-1) ... 749s Selecting previously unselected package r-cran-progress. 749s Preparing to unpack .../251-r-cran-progress_1.2.3-1_all.deb ... 749s Unpacking r-cran-progress (1.2.3-1) ... 749s Selecting previously unselected package r-cran-httr2. 749s Preparing to unpack .../252-r-cran-httr2_1.1.1-1_all.deb ... 749s Unpacking r-cran-httr2 (1.1.1-1) ... 749s Selecting previously unselected package r-cran-xml2. 749s Preparing to unpack .../253-r-cran-xml2_1.3.7-1_arm64.deb ... 749s Unpacking r-cran-xml2 (1.3.7-1) ... 749s Selecting previously unselected package r-bioc-biomart. 749s Preparing to unpack .../254-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 749s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 749s Selecting previously unselected package r-cran-farver. 749s Preparing to unpack .../255-r-cran-farver_2.1.2-1_arm64.deb ... 749s Unpacking r-cran-farver (2.1.2-1) ... 749s Selecting previously unselected package r-cran-labeling. 749s Preparing to unpack .../256-r-cran-labeling_0.4.3-1_all.deb ... 749s Unpacking r-cran-labeling (0.4.3-1) ... 749s Selecting previously unselected package r-cran-colorspace. 749s Preparing to unpack .../257-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 749s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 749s Selecting previously unselected package r-cran-munsell. 749s Preparing to unpack .../258-r-cran-munsell_0.5.1-1_all.deb ... 749s Unpacking r-cran-munsell (0.5.1-1) ... 750s Selecting previously unselected package r-cran-rcolorbrewer. 750s Preparing to unpack .../259-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 750s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 750s Selecting previously unselected package r-cran-viridislite. 750s Preparing to unpack .../260-r-cran-viridislite_0.4.2-2_all.deb ... 750s Unpacking r-cran-viridislite (0.4.2-2) ... 750s Selecting previously unselected package r-cran-scales. 750s Preparing to unpack .../261-r-cran-scales_1.3.0-1_all.deb ... 750s Unpacking r-cran-scales (1.3.0-1) ... 750s Selecting previously unselected package r-cran-gtable. 750s Preparing to unpack .../262-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 750s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 750s Selecting previously unselected package r-cran-isoband. 750s Preparing to unpack .../263-r-cran-isoband_0.2.7-1_arm64.deb ... 750s Unpacking r-cran-isoband (0.2.7-1) ... 750s Selecting previously unselected package r-cran-mass. 750s Preparing to unpack .../264-r-cran-mass_7.3-64-1_arm64.deb ... 750s Unpacking r-cran-mass (7.3-64-1) ... 750s Selecting previously unselected package r-cran-lattice. 750s Preparing to unpack .../265-r-cran-lattice_0.22-6-1_arm64.deb ... 750s Unpacking r-cran-lattice (0.22-6-1) ... 750s Selecting previously unselected package r-cran-nlme. 750s Preparing to unpack .../266-r-cran-nlme_3.1.167-1_arm64.deb ... 750s Unpacking r-cran-nlme (3.1.167-1) ... 750s Selecting previously unselected package r-cran-matrix. 750s Preparing to unpack .../267-r-cran-matrix_1.7-3-1_arm64.deb ... 750s Unpacking r-cran-matrix (1.7-3-1) ... 750s Selecting previously unselected package r-cran-mgcv. 750s Preparing to unpack .../268-r-cran-mgcv_1.9-1-1_arm64.deb ... 750s Unpacking r-cran-mgcv (1.9-1-1) ... 750s Selecting previously unselected package r-cran-ggplot2. 750s Preparing to unpack .../269-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 750s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 750s Selecting previously unselected package r-cran-cluster. 750s Preparing to unpack .../270-r-cran-cluster_2.1.8-1_arm64.deb ... 750s Unpacking r-cran-cluster (2.1.8-1) ... 750s Selecting previously unselected package r-cran-survival. 750s Preparing to unpack .../271-r-cran-survival_3.8-3-1_arm64.deb ... 750s Unpacking r-cran-survival (3.8-3-1) ... 750s Selecting previously unselected package r-cran-rpart. 751s Preparing to unpack .../272-r-cran-rpart_4.1.24-1_arm64.deb ... 751s Unpacking r-cran-rpart (4.1.24-1) ... 751s Selecting previously unselected package r-cran-nnet. 751s Preparing to unpack .../273-r-cran-nnet_7.3-20-1_arm64.deb ... 751s Unpacking r-cran-nnet (7.3-20-1) ... 751s Selecting previously unselected package r-cran-foreign. 751s Preparing to unpack .../274-r-cran-foreign_0.8.88-1_arm64.deb ... 751s Unpacking r-cran-foreign (0.8.88-1) ... 751s Selecting previously unselected package r-cran-gridextra. 751s Preparing to unpack .../275-r-cran-gridextra_2.3-3build1_all.deb ... 751s Unpacking r-cran-gridextra (2.3-3build1) ... 751s Selecting previously unselected package r-cran-data.table. 751s Preparing to unpack .../276-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 751s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 751s Selecting previously unselected package r-cran-backports. 751s Preparing to unpack .../277-r-cran-backports_1.5.0-2_arm64.deb ... 751s Unpacking r-cran-backports (1.5.0-2) ... 751s Selecting previously unselected package r-cran-checkmate. 751s Preparing to unpack .../278-r-cran-checkmate_2.3.2-1_arm64.deb ... 751s Unpacking r-cran-checkmate (2.3.2-1) ... 751s Selecting previously unselected package r-cran-htmlwidgets. 751s Preparing to unpack .../279-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 751s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 751s Selecting previously unselected package r-cran-rstudioapi. 751s Preparing to unpack .../280-r-cran-rstudioapi_0.17.1-1_all.deb ... 751s Unpacking r-cran-rstudioapi (0.17.1-1) ... 751s Selecting previously unselected package r-cran-htmltable. 751s Preparing to unpack .../281-r-cran-htmltable_2.4.3-1_all.deb ... 751s Unpacking r-cran-htmltable (2.4.3-1) ... 751s Selecting previously unselected package r-cran-viridis. 751s Preparing to unpack .../282-r-cran-viridis_0.6.5-1_all.deb ... 751s Unpacking r-cran-viridis (0.6.5-1) ... 751s Selecting previously unselected package r-cran-formula. 751s Preparing to unpack .../283-r-cran-formula_1.2-5-1_all.deb ... 751s Unpacking r-cran-formula (1.2-5-1) ... 751s Selecting previously unselected package r-cran-chron. 751s Preparing to unpack .../284-r-cran-chron_2.3-62-1_arm64.deb ... 751s Unpacking r-cran-chron (2.3-62-1) ... 751s Selecting previously unselected package r-cran-jpeg. 751s Preparing to unpack .../285-r-cran-jpeg_0.1-10-1_arm64.deb ... 751s Unpacking r-cran-jpeg (0.1-10-1) ... 751s Selecting previously unselected package r-cran-deldir. 751s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_arm64.deb ... 751s Unpacking r-cran-deldir (2.0-4-1build1) ... 751s Selecting previously unselected package r-cran-rcppeigen. 752s Preparing to unpack .../287-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ... 752s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 752s Selecting previously unselected package r-cran-interp. 752s Preparing to unpack .../288-r-cran-interp_1.1-6-1_arm64.deb ... 752s Unpacking r-cran-interp (1.1-6-1) ... 752s Selecting previously unselected package r-cran-latticeextra. 752s Preparing to unpack .../289-r-cran-latticeextra_0.6-30-1_all.deb ... 752s Unpacking r-cran-latticeextra (0.6-30-1) ... 752s Selecting previously unselected package r-cran-acepack. 752s Preparing to unpack .../290-r-cran-acepack_1.6.1-1_arm64.deb ... 752s Unpacking r-cran-acepack (1.6.1-1) ... 752s Selecting previously unselected package r-cran-hmisc. 752s Preparing to unpack .../291-r-cran-hmisc_5.2-2-1_arm64.deb ... 752s Unpacking r-cran-hmisc (5.2-2-1) ... 752s Selecting previously unselected package r-cran-dichromat. 752s Preparing to unpack .../292-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 752s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 752s Selecting previously unselected package r-cran-matrixstats. 752s Preparing to unpack .../293-r-cran-matrixstats_1.5.0-1_arm64.deb ... 752s Unpacking r-cran-matrixstats (1.5.0-1) ... 752s Selecting previously unselected package r-bioc-matrixgenerics. 752s Preparing to unpack .../294-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 752s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 752s Selecting previously unselected package r-cran-abind. 752s Preparing to unpack .../295-r-cran-abind_1.4-8-1_all.deb ... 752s Unpacking r-cran-abind (1.4-8-1) ... 752s Selecting previously unselected package r-bioc-s4arrays. 752s Preparing to unpack .../296-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 752s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 752s Selecting previously unselected package r-bioc-sparsearray. 752s Preparing to unpack .../297-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 752s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 752s Selecting previously unselected package r-bioc-delayedarray. 752s Preparing to unpack .../298-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 752s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 752s Selecting previously unselected package r-bioc-summarizedexperiment. 752s Preparing to unpack .../299-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 752s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 752s Selecting previously unselected package r-cran-bitops. 752s Preparing to unpack .../300-r-cran-bitops_1.0-9-1_arm64.deb ... 752s Unpacking r-cran-bitops (1.0-9-1) ... 753s Selecting previously unselected package r-bioc-rhtslib. 753s Preparing to unpack .../301-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 753s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 753s Selecting previously unselected package r-bioc-rsamtools. 753s Preparing to unpack .../302-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 753s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 753s Selecting previously unselected package r-bioc-genomicalignments. 753s Preparing to unpack .../303-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 753s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 753s Selecting previously unselected package r-cran-rcurl. 753s Preparing to unpack .../304-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 753s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 754s Selecting previously unselected package r-cran-rjson. 754s Preparing to unpack .../305-r-cran-rjson_0.2.23-1_arm64.deb ... 754s Unpacking r-cran-rjson (0.2.23-1) ... 754s Selecting previously unselected package r-cran-restfulr. 754s Preparing to unpack .../306-r-cran-restfulr_0.0.15-1_arm64.deb ... 754s Unpacking r-cran-restfulr (0.0.15-1) ... 754s Selecting previously unselected package r-bioc-rtracklayer. 754s Preparing to unpack .../307-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 754s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 754s Selecting previously unselected package r-bioc-genomicfeatures. 754s Preparing to unpack .../308-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 754s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 754s Selecting previously unselected package r-bioc-bsgenome. 754s Preparing to unpack .../309-r-bioc-bsgenome_1.74.0-2_all.deb ... 754s Unpacking r-bioc-bsgenome (1.74.0-2) ... 754s Selecting previously unselected package r-bioc-variantannotation. 754s Preparing to unpack .../310-r-bioc-variantannotation_1.52.0-2_arm64.deb ... 754s Unpacking r-bioc-variantannotation (1.52.0-2) ... 754s Selecting previously unselected package r-bioc-protgenerics. 754s Preparing to unpack .../311-r-bioc-protgenerics_1.38.0-2_all.deb ... 754s Unpacking r-bioc-protgenerics (1.38.0-2) ... 754s Selecting previously unselected package r-bioc-ensembldb. 754s Preparing to unpack .../312-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 754s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 754s Selecting previously unselected package r-bioc-biovizbase. 754s Preparing to unpack .../313-r-bioc-biovizbase_1.54.0-2_arm64.deb ... 754s Unpacking r-bioc-biovizbase (1.54.0-2) ... 754s Selecting previously unselected package r-bioc-pwalign. 754s Preparing to unpack .../314-r-bioc-pwalign_1.2.0-2_arm64.deb ... 754s Unpacking r-bioc-pwalign (1.2.0-2) ... 754s Selecting previously unselected package r-cran-clipr. 754s Preparing to unpack .../315-r-cran-clipr_0.8.0-1_all.deb ... 754s Unpacking r-cran-clipr (0.8.0-1) ... 754s Selecting previously unselected package r-cran-tzdb. 754s Preparing to unpack .../316-r-cran-tzdb_0.4.0-2_arm64.deb ... 754s Unpacking r-cran-tzdb (0.4.0-2) ... 754s Selecting previously unselected package r-cran-vroom. 754s Preparing to unpack .../317-r-cran-vroom_1.6.5-1_arm64.deb ... 754s Unpacking r-cran-vroom (1.6.5-1) ... 754s Selecting previously unselected package r-cran-readr. 754s Preparing to unpack .../318-r-cran-readr_2.1.5-1_arm64.deb ... 754s Unpacking r-cran-readr (2.1.5-1) ... 754s Selecting previously unselected package r-cran-plyr. 754s Preparing to unpack .../319-r-cran-plyr_1.8.9-1_arm64.deb ... 754s Unpacking r-cran-plyr (1.8.9-1) ... 754s Selecting previously unselected package r-cran-reshape2. 754s Preparing to unpack .../320-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 754s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 754s Selecting previously unselected package r-cran-pracma. 754s Preparing to unpack .../321-r-cran-pracma_2.4.4-3_all.deb ... 754s Unpacking r-cran-pracma (2.4.4-3) ... 754s Selecting previously unselected package r-cran-powerlaw. 754s Preparing to unpack .../322-r-cran-powerlaw_1.0.0-1_all.deb ... 754s Unpacking r-cran-powerlaw (1.0.0-1) ... 770s Selecting previously unselected package r-bioc-go.db. 770s Preparing to unpack .../323-r-bioc-go.db_3.20.0-2_all.deb ... 770s Unpacking r-bioc-go.db (3.20.0-2) ... 770s Selecting previously unselected package r-cran-r.methodss3. 770s Preparing to unpack .../324-r-cran-r.methodss3_1.8.2-1_all.deb ... 770s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 770s Selecting previously unselected package r-cran-r.oo. 770s Preparing to unpack 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770s Preparing to unpack .../331-r-cran-processx_3.8.6-1_arm64.deb ... 770s Unpacking r-cran-processx (3.8.6-1) ... 770s Selecting previously unselected package r-cran-callr. 770s Preparing to unpack .../332-r-cran-callr_3.7.6-1_all.deb ... 770s Unpacking r-cran-callr (3.7.6-1) ... 770s Selecting previously unselected package r-cran-desc. 770s Preparing to unpack .../333-r-cran-desc_1.4.3-1_all.deb ... 770s Unpacking r-cran-desc (1.4.3-1) ... 770s Selecting previously unselected package r-cran-diffobj. 770s Preparing to unpack .../334-r-cran-diffobj_0.3.5-1_arm64.deb ... 770s Unpacking r-cran-diffobj (0.3.5-1) ... 770s Selecting previously unselected package r-cran-pkgbuild. 770s Preparing to unpack .../335-r-cran-pkgbuild_1.4.6-1_all.deb ... 770s Unpacking r-cran-pkgbuild (1.4.6-1) ... 770s Selecting previously unselected package r-cran-rprojroot. 770s Preparing to unpack .../336-r-cran-rprojroot_2.0.4-2_all.deb ... 770s Unpacking r-cran-rprojroot (2.0.4-2) ... 770s Selecting 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770s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 770s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 770s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 770s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 770s Setting up libxi6:arm64 (2:1.8.2-1) ... 770s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 770s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 770s Setting up libjs-popper.js (1.16.1+ds-6) ... 770s Setting up libxcb-render0:arm64 (1.17.0-2) ... 770s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 770s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 770s Setting up libjs-lunr (2.3.9~dfsg-2) ... 770s Setting up unzip (6.0-28ubuntu6) ... 770s Setting up liblatex-tounicode-perl (0.55-1) ... 770s Setting up x11-common (1:7.7+23ubuntu3) ... 770s Setting up node-html5shiv (3.7.3+dfsg-5) ... 770s Setting up libdeflate0:arm64 (1.23-1) ... 770s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 770s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 770s Setting up 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770s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 770s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 770s Setting up fonts-lmodern (2.005-1) ... 770s Setting up liblua5.4-0:arm64 (5.4.7-1) ... 770s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 770s Setting up libthai-data (0.1.29-2build1) ... 770s Setting up node-bootstrap-sass (3.4.3-2) ... 770s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 770s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 770s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 770s Setting up libpaper2:arm64 (2.2.5-0.3) ... 770s Setting up pandoc-data (3.1.11.1-3build1) ... 770s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 770s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 770s Setting up libisl23:arm64 (0.27-1) ... 770s Setting up libdeflate-dev:arm64 (1.23-1) ... 770s Setting up node-normalize.css (8.0.1-5) ... 770s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 770s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 770s Setting up xdg-utils (1.2.1-2ubuntu1) ... 770s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 770s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 770s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 770s Setting up libblas-dev:arm64 (3.12.1-2) ... 770s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 770s Setting up dctrl-tools (2.24-3build3) ... 770s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 770s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 770s Setting up libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 770s Setting up libbz2-dev:arm64 (1.0.8-6) ... 770s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 770s Setting up libpotrace0:arm64 (1.16-2build1) ... 770s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 770s Setting up libice6:arm64 (2:1.1.1-1) ... 770s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 770s Setting up liblapack3:arm64 (3.12.1-2) ... 770s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 770s Setting up libpcre2-dev:arm64 (10.45-1) ... 770s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 770s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 770s Setting up libpng-dev:arm64 (1.6.47-1) ... 770s Setting up libpaper-utils (2.2.5-0.3) ... 770s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 770s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 770s Setting up pkgconf:arm64 (1.8.1-4) ... 770s Setting up libthai0:arm64 (0.1.29-2build1) ... 770s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 770s Setting up libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 770s Setting up pandoc (3.1.11.1+ds-2) ... 770s Setting up liblapack-dev:arm64 (3.12.1-2) ... 770s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 770s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 770s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 770s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 770s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 770s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 770s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 770s Setting up libsm6:arm64 (2:1.2.4-1) ... 770s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 770s Setting up fontconfig (2.15.0-2ubuntu1) ... 770s Regenerating fonts cache... done. 770s Setting up libxft2:arm64 (2.3.6-1build1) ... 770s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 770s Setting up libtk8.6:arm64 (8.6.16-1) ... 770s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 770s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 770s Setting up libcairo2:arm64 (1.18.2-2) ... 770s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 770s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 770s Setting up cpp-14 (14.2.0-17ubuntu3) ... 770s Setting up cpp (4:14.2.0-1ubuntu1) ... 770s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 770s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 770s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 770s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 770s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 770s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 770s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 770s Setting up libxaw7:arm64 (2:1.0.16-1) ... 770s Setting up gcc-14 (14.2.0-17ubuntu3) ... 770s Setting up r-base-core (4.4.3-1) ... 770s Creating config file /etc/R/Renviron with new version 770s Setting up r-cran-crayon (1.5.3-1) ... 770s Setting up r-cran-labeling (0.4.3-1) ... 770s Setting up r-cran-sourcetools (0.1.7-1-1) ... 770s Setting up r-cran-futile.options (1.0.1-3build1) ... 770s Setting up r-cran-lattice (0.22-6-1) ... 770s Setting up r-cran-ps (1.9.0-1) ... 770s Setting up r-cran-nlme (3.1.167-1) ... 770s Setting up r-cran-farver (2.1.2-1) ... 770s Setting up r-cran-formatr (1.14-2) ... 770s Setting up r-cran-formula (1.2-5-1) ... 770s Setting up r-cran-xml (3.99-0.18-1) ... 770s Setting up r-cran-viridislite (0.4.2-2) ... 770s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 770s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 770s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 770s Setting up r-cran-cluster (2.1.8-1) ... 770s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 770s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 770s Setting up r-cran-nnet (7.3-20-1) ... 770s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 770s Setting up r-cran-lazyeval (0.2.2-1build1) ... 770s Setting up r-cran-clipr (0.8.0-1) ... 770s Setting up r-cran-commonmark (1.9.2-2) ... 770s Setting up g++-14 (14.2.0-17ubuntu3) ... 770s Setting up r-cran-rjson (0.2.23-1) ... 770s Setting up r-cran-r6 (2.6.1-1) ... 770s Setting up r-cran-pkgkitten (0.2.4-1) ... 770s Setting up r-cran-jpeg (0.1-10-1) ... 770s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 770s Setting up r-cran-chron (2.3-62-1) ... 770s Setting up texlive-base (2024.20250114-1) ... 770s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 770s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 770s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 770s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 770s Setting up r-cran-magrittr (2.0.3-1) ... 770s Setting up r-cran-rappdirs (0.3.3-1) ... 770s Setting up r-cran-filelock (1.0.3-1) ... 770s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 770s Setting up r-cran-littler (0.3.20-2) ... 770s Setting up r-cran-bh (1.84.0-1) ... 770s Setting up r-cran-fs (1.6.5+dfsg-1) ... 770s Setting up r-cran-rcpp (1.0.14-1) ... 770s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 770s Setting up r-cran-codetools (0.2-20-1) ... 770s Setting up r-cran-brio (1.1.5-1) ... 770s Setting up r-cran-diffobj (0.3.5-1) ... 770s Setting up r-bioc-biocgenerics (0.52.0-2) ... 770s Setting up r-cran-rlang (1.1.5-1) ... 770s Setting up r-cran-matrixstats (1.5.0-1) ... 770s Setting up littler (0.3.20-2) ... 770s Setting up r-cran-pracma (2.4.4-3) ... 770s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 770s Setting up r-cran-xfun (0.51+dfsg-1) ... 770s Setting up r-cran-sys (3.4.3-1) ... 770s Setting up r-cran-plogr (0.2.0-3build1) ... 770s Setting up r-cran-withr (3.0.2+dfsg-1) ... 770s Setting up r-cran-backports (1.5.0-2) ... 770s Setting up r-cran-processx (3.8.6-1) ... 770s Setting up r-cran-mime (0.12-2) ... 770s Setting up r-cran-praise (1.0.0-4build1) ... 770s Setting up r-cran-generics (0.1.3-1) ... 770s Setting up r-cran-base64enc (0.1-3-3) ... 770s Setting up r-cran-abind (1.4-8-1) ... 770s Setting up r-cran-digest (0.6.37-1) ... 770s Setting up r-cran-yaml (2.3.10-1) ... 770s Setting up r-cran-lambda.r (1.2.4-2build1) ... 770s Setting up r-bioc-protgenerics (1.38.0-2) ... 770s Setting up r-cran-evaluate (1.0.3-1) ... 770s Setting up r-cran-dbi (1.2.3-1) ... 770s Setting up r-cran-highr (0.11+dfsg-1) ... 770s Setting up r-cran-prettyunits (1.2.0-1) ... 770s Setting up r-cran-fansi (1.0.5-1) ... 770s Setting up r-cran-mass (7.3-64-1) ... 770s Setting up r-cran-checkmate (2.3.2-1) ... 770s Setting up r-cran-acepack (1.6.1-1) ... 770s Setting up r-cran-snow (1:0.4.4-2) ... 770s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 770s Setting up r-cran-glue (1.8.0-1) ... 770s Setting up r-cran-foreign (0.8.88-1) ... 770s Setting up r-cran-bit (4.6.0+dfsg-1) ... 770s Setting up r-cran-xtable (1:1.8-4-2) ... 770s Setting up r-cran-cli (3.6.4-1) ... 770s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 770s Setting up r-cran-bitops (1.0-9-1) ... 770s Setting up r-bioc-biocversion (3.20.0-2) ... 770s Setting up r-cran-rprojroot (2.0.4-2) ... 770s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 770s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 770s Setting up gcc (4:14.2.0-1ubuntu1) ... 770s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 770s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 770s Setting up r-cran-deldir (2.0-4-1build1) ... 770s Setting up r-cran-askpass (1.2.1-1) ... 770s Setting up r-cran-fastmap (1.2.0-1) ... 770s Setting up r-cran-png (0.1-8-1build2) ... 770s Setting up r-cran-r.methodss3 (1.8.2-1) ... 770s Setting up r-bioc-biobase (2.66.0-2) ... 770s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 770s Setting up r-cran-rstudioapi (0.17.1-1) ... 770s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 770s Setting up r-cran-utf8 (1.2.4-1) ... 770s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 770s Setting up r-cran-stringi (1.8.4-1build1) ... 770s Setting up texlive-latex-base (2024.20250114-1) ... 770s Setting up r-cran-cpp11 (0.5.2-1) ... 770s Setting up r-cran-plyr (1.8.9-1) ... 770s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 770s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 770s Setting up r-cran-isoband (0.2.7-1) ... 770s Setting up r-cran-futile.logger (1.4.3-4build1) ... 770s Setting up r-cran-waldo (0.6.1-2) ... 770s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 770s Setting up r-cran-later (1.4.1+dfsg-1) ... 770s Setting up r-cran-matrix (1.7-3-1) ... 770s Setting up r-cran-htmltools (0.5.8.1-1) ... 770s Setting up r-cran-tinytex (0.56-1) ... 770s Setting up r-cran-knitr (1.49+dfsg-1) ... 770s Setting up r-cran-mgcv (1.9-1-1) ... 770s Setting up g++ (4:14.2.0-1ubuntu1) ... 770s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 770s Setting up r-cran-powerlaw (1.0.0-1) ... 770s Setting up r-cran-cachem (1.1.0-1) ... 770s Setting up r-cran-sass (0.4.9+dfsg-1) ... 770s Setting up build-essential (12.10ubuntu1) ... 770s Setting up r-bioc-iranges (2.40.1-2) ... 770s Setting up r-cran-tzdb (0.4.0-2) ... 770s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 770s Setting up r-cran-restfulr (0.0.15-1) ... 770s Setting up r-cran-vctrs (0.6.5-1) ... 770s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 770s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 770s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 770s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 770s Setting up r-cran-stringr (1.5.1-1) ... 770s Setting up r-bioc-biocparallel (1.40.0-2) ... 770s Setting up r-cran-callr (3.7.6-1) ... 770s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 770s Setting up r-cran-desc (1.4.3-1) ... 770s Setting up r-cran-xml2 (1.3.7-1) ... 770s Setting up r-cran-munsell (0.5.1-1) ... 770s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 770s Setting up r-cran-fontawesome (0.5.3-1) ... 770s Setting up r-cran-survival (3.8-3-1) ... 770s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 770s Setting up r-cran-r.oo (1.27.0-1) ... 770s Setting up gfortran (4:14.2.0-1ubuntu1) ... 770s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 770s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 770s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 770s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 770s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 770s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 770s Setting up texlive-bibtex-extra (2024.20250114-1) ... 770s Setting up r-cran-reshape2 (1.4.4-2build1) ... 770s Setting up r-cran-interp (1.1-6-1) ... 770s Setting up r-cran-httr2 (1.1.1-1) ... 770s Setting up r-cran-httr (1.4.7+dfsg-1) ... 770s Setting up r-cran-gridextra (2.3-3build1) ... 770s Setting up r-cran-hms (1.1.3-1) ... 770s Setting up r-cran-scales (1.3.0-1) ... 770s Setting up r-cran-memoise (2.0.1-1) ... 770s Setting up r-cran-promises (1.3.2+dfsg-1) ... 770s Setting up r-cran-purrr (1.0.4-1) ... 770s Setting up r-cran-blob (1.2.4-1) ... 770s Setting up r-bioc-xvector (0.46.0-2) ... 770s Setting up r-cran-pkgbuild (1.4.6-1) ... 770s Setting up r-cran-dplyr (1.1.4-4) ... 770s Setting up r-cran-rsqlite (2.3.9-1) ... 770s Setting up r-cran-progress (1.2.3-1) ... 770s Setting up r-cran-pkgload (1.4.0-1) ... 770s Setting up r-cran-r.utils (2.13.0-1) ... 770s Setting up r-cran-vroom (1.6.5-1) ... 770s Setting up r-base-dev (4.4.3-1) ... 770s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 770s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 770s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 770s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 770s Setting up r-cran-rpart (4.1.24-1) ... 770s Setting up r-cran-latticeextra (0.6-30-1) ... 770s Setting up r-cran-viridis (0.6.5-1) ... 770s Setting up r-cran-testthat (3.2.3-1) ... 770s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 770s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 770s Setting up r-cran-readr (2.1.5-1) ... 770s Setting up r-cran-tidyr (1.3.1-1) ... 770s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 770s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 770s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 770s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 770s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 770s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 770s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 770s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 770s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 770s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 770s Setting up r-cran-bookdown (0.42+dfsg-1) ... 770s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 770s Setting up r-bioc-pwalign (1.2.0-2) ... 770s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 770s Setting up r-bioc-annotationdbi (1.68.0-2) ... 770s Setting up r-bioc-go.db (3.20.0-2) ... 770s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 770s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 770s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 770s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 770s Setting up r-bioc-genomicalignments (1.42.0-2) ... 770s Setting up r-bioc-rtracklayer (1.66.0-2) ... 770s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 770s Setting up r-cran-htmltable (2.4.3-1) ... 770s Setting up r-bioc-cner (1.42.0+dfsg-2) ... 770s Setting up r-bioc-bsgenome (1.74.0-2) ... 770s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 770s Setting up r-cran-hmisc (5.2-2-1) ... 770s Setting up r-bioc-variantannotation (1.52.0-2) ... 770s Setting up r-bioc-biovizbase (1.54.0-2) ... 770s Setting up r-bioc-gviz (1.50.0+dfsg-2) ... 770s Processing triggers for libc-bin (2.41-1ubuntu2) ... 770s Processing triggers for man-db (2.13.0-1) ... 770s Processing triggers for install-info (7.1.1-1) ... 770s Processing triggers for tex-common (6.19) ... 770s Running updmap-sys. This may take some time... done. 770s Running mktexlsr /var/lib/texmf ... done. 770s Building format(s) --all. 807s This may take some time... done. 990s autopkgtest [15:21:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 990s autopkgtest [15:21:31]: test pkg-r-autopkgtest: [----------------------- 994s Test: Try to load the R library CNEr 994s 994s R version 4.4.3 (2025-02-28) -- "Trophy Case" 994s Copyright (C) 2025 The R Foundation for Statistical Computing 994s Platform: aarch64-unknown-linux-gnu 994s 994s R is free software and comes with ABSOLUTELY NO WARRANTY. 994s You are welcome to redistribute it under certain conditions. 994s Type 'license()' or 'licence()' for distribution details. 994s 994s R is a collaborative project with many contributors. 994s Type 'contributors()' for more information and 994s 'citation()' on how to cite R or R packages in publications. 994s 994s Type 'demo()' for some demos, 'help()' for on-line help, or 994s 'help.start()' for an HTML browser interface to help. 994s Type 'q()' to quit R. 994s 994s > library('CNEr') 1005s 1005s > 1005s > 1005s Other tests are currently unsupported! 1005s They will be progressively added. 1006s autopkgtest [15:21:47]: test pkg-r-autopkgtest: -----------------------] 1010s pkg-r-autopkgtest PASS 1010s autopkgtest [15:21:51]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1042s autopkgtest [15:22:23]: @@@@@@@@@@@@@@@@@@@@ summary 1042s pkg-r-autopkgtest PASS 1124s nova [W] Using flock in prodstack6-arm64 1124s Creating nova instance adt-plucky-arm64-r-bioc-cner-20250315-150500-juju-7f2275-prod-proposed-migration-environment-15-43959b4a-6d8d-44d4-9c05-6b5a2144c485 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1124s nova [W] Timed out waiting for e109c21d-028d-42c6-8478-40b9f940386f to get deleted.