0s autopkgtest [15:36:04]: starting date and time: 2025-03-15 15:36:04+0000 0s autopkgtest [15:36:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:36:04]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wj9f8u98/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biostrings --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-1.secgroup --name adt-plucky-arm64-r-bioc-biostrings-20250315-150427-juju-7f2275-prod-proposed-migration-environment-20-3ff547c0-ec5c-49cf-b0a6-2efe53bc3872 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 135s autopkgtest [15:38:19]: testbed dpkg architecture: arm64 135s autopkgtest [15:38:19]: testbed apt version: 2.9.33 135s autopkgtest [15:38:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 135s autopkgtest [15:38:19]: testbed release detected to be: None 136s autopkgtest [15:38:20]: updating testbed package index (apt update) 137s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 137s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 137s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 138s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 138s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 138s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 138s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 138s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 138s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 138s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 138s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 139s Fetched 1078 kB in 2s (530 kB/s) 140s Reading package lists... 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade... 141s Calculating upgrade... 142s The following packages will be upgraded: 142s pinentry-curses python3-jinja2 strace 142s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Need to get 647 kB of archives. 142s After this operation, 11.3 kB of additional disk space will be used. 142s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 143s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 143s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 144s Fetched 647 kB in 1s (657 kB/s) 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 144s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 144s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 144s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 144s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 144s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 144s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 144s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 144s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 145s Setting up strace (6.13+ds-1ubuntu1) ... 145s Processing triggers for man-db (2.13.0-1) ... 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 147s The following packages will be REMOVED: 147s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 147s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 147s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 147s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 147s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 147s After this operation, 267 MB disk space will be freed. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 147s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 147s Removing libpython3.12t64:arm64 (3.12.9-1) ... 147s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 147s Removing libnsl2:arm64 (1.3.0-3build3) ... 147s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 147s Removing libunwind8:arm64 (1.6.2-3.1) ... 147s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 148s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 149s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 150s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 150s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 150s /etc/kernel/postrm.d/initramfs-tools: 150s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 150s /etc/kernel/postrm.d/zz-flash-kernel: 150s flash-kernel: Kernel 6.11.0-8-generic has been removed. 150s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 150s /etc/kernel/postrm.d/zz-update-grub: 150s Sourcing file `/etc/default/grub' 150s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 150s Generating grub configuration file ... 150s Found linux image: /boot/vmlinuz-6.14.0-10-generic 150s Found initrd image: /boot/initrd.img-6.14.0-10-generic 151s Warning: os-prober will not be executed to detect other bootable partitions. 151s Systems on them will not be added to the GRUB boot configuration. 151s Check GRUB_DISABLE_OS_PROBER documentation entry. 151s Adding boot menu entry for UEFI Firmware Settings ... 151s done 151s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 151s Processing triggers for libc-bin (2.41-1ubuntu1) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 151s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 151s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 151s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 151s autopkgtest [15:38:35]: upgrading testbed (apt dist-upgrade and autopurge) 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 153s Entering ResolveByKeep 154s 154s Calculating upgrade... 154s The following packages will be upgraded: 154s libc-bin libc-dev-bin libc6 libc6-dev locales 154s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 9530 kB of archives. 154s After this operation, 0 B of additional disk space will be used. 154s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 157s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 166s Preconfiguring packages ... 166s Fetched 9530 kB in 11s (853 kB/s) 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 167s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 167s Setting up libc6:arm64 (2.41-1ubuntu2) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 167s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 167s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 167s Setting up libc-bin (2.41-1ubuntu2) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 167s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 167s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 168s Setting up locales (2.41-1ubuntu2) ... 168s Generating locales (this might take a while)... 170s en_US.UTF-8... done 170s Generation complete. 170s Setting up libc-dev-bin (2.41-1ubuntu2) ... 170s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 170s Processing triggers for man-db (2.13.0-1) ... 171s Processing triggers for systemd (257.3-1ubuntu3) ... 172s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 174s Solving dependencies... 174s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s autopkgtest [15:38:58]: rebooting testbed after setup commands that affected boot 198s autopkgtest [15:39:22]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 200s autopkgtest [15:39:24]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biostrings 217s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (dsc) [2327 B] 217s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (tar) [12.1 MB] 217s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biostrings 2.74.1+dfsg-2 (diff) [5544 B] 217s gpgv: Signature made Sun Jan 12 14:09:29 2025 UTC 217s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 217s gpgv: issuer "crusoe@debian.org" 217s gpgv: Can't check signature: No public key 217s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biostrings_2.74.1+dfsg-2.dsc: no acceptable signature found 218s autopkgtest [15:39:42]: testing package r-bioc-biostrings version 2.74.1+dfsg-2 219s autopkgtest [15:39:43]: build not needed 224s autopkgtest [15:39:48]: test pkg-r-autopkgtest: preparing testbed 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 227s The following NEW packages will be installed: 227s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 227s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 227s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 227s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 227s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 227s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 227s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 227s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 227s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 227s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 227s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 227s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 227s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 227s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 227s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 227s libjs-popper.js libjs-prettify libjs-sifter.js 227s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 227s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 227s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 227s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 227s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 227s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 227s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 227s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 227s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 227s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 227s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 227s r-bioc-affy r-bioc-affyio r-bioc-annotationdbi r-bioc-biobase 227s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 227s r-bioc-biocversion r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 227s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 227s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 227s r-bioc-matrixgenerics r-bioc-preprocesscore r-bioc-pwalign r-bioc-rhtslib 227s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 227s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 227s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 227s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 227s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 227s r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-covr 227s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj 227s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome 227s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 227s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 227s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 227s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 227s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 227s r-cran-openssl r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 227s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-processx 227s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 227s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 227s r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 227s r-cran-snow r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tinytex 227s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 227s r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra 227s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 227s zlib1g-dev 227s 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 421 MB of archives. 227s After this operation, 1331 MB of additional disk space will be used. 227s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 228s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 228s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 242s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 242s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 242s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 242s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 242s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 242s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 242s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 246s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 247s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 251s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 252s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 254s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 257s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 282s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 283s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 283s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 283s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 285s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 299s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 299s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 299s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 299s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 299s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 299s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 300s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 301s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 301s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 301s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 301s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 302s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 302s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 307s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 314s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 314s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 314s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 323s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 323s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 323s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 323s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 323s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 323s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 323s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 323s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 323s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 324s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 324s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 336s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 336s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 336s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 336s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 336s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 336s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 336s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 337s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 337s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 337s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 337s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 337s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 337s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 337s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 337s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 351s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 351s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 351s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 351s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 351s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 351s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 352s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 352s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 352s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 352s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 352s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 353s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 353s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 353s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 353s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 353s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 353s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 354s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 354s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 354s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 354s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 354s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 356s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 361s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 361s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 361s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 361s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 361s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 361s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 362s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 362s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 362s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 362s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 362s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 362s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 362s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 362s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 362s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 363s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 363s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 364s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 364s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 364s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 364s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 365s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 365s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 365s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 365s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 366s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 366s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 366s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 366s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 366s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 367s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 367s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 367s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 368s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 368s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 368s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 368s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 368s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 368s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 368s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 368s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 369s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 369s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 399s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 400s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 400s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 400s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 400s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 400s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 400s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 431s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 432s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 432s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 432s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 432s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 432s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 432s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 433s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 435s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 435s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affyio arm64 1.76.0-2 [89.1 kB] 435s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 435s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-preprocesscore arm64 1.68.0+ds-2 [152 kB] 435s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affy arm64 1.84.0-2 [2020 kB] 438s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 441s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 443s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 444s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 444s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 445s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 447s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 448s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 449s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 449s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 450s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 450s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 450s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 450s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 450s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 450s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 451s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 451s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 452s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 452s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 453s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 453s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 453s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 453s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 453s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 454s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 454s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 454s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 455s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 455s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 471s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 475s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 475s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 491s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 491s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 497s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 497s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 497s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 497s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 497s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 497s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 497s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 498s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 498s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 499s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 499s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 500s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 500s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 500s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 501s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 501s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 501s Get:202 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 507s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 509s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 509s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 509s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 509s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 510s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 515s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 516s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 516s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 517s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 517s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 519s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 519s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 519s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 520s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 520s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 521s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 521s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 521s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 522s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 522s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 525s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 527s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 529s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 529s Get:227 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 529s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 538s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 563s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 564s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 653s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 653s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 654s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 657s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 660s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 660s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 662s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 668s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 668s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 669s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 671s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 677s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 678s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 679s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 680s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 682s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 684s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 686s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 687s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 687s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 688s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 694s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 702s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 703s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.2.0-2 [752 kB] 704s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 704s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 705s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 705s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 706s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 706s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 706s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 707s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 707s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 709s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 709s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 710s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 710s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 710s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 710s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 711s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 713s Preconfiguring packages ... 713s Fetched 421 MB in 8min 5s (867 kB/s) 714s Selecting previously unselected package libisl23:arm64. 714s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 714s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 714s Unpacking libisl23:arm64 (0.27-1) ... 714s Selecting previously unselected package libmpc3:arm64. 714s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 714s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 714s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 714s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 714s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 714s Selecting previously unselected package cpp-14. 714s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 714s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 714s Selecting previously unselected package cpp-aarch64-linux-gnu. 714s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 714s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 714s Selecting previously unselected package cpp. 714s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 714s Unpacking cpp (4:14.2.0-1ubuntu1) ... 714s Selecting previously unselected package libcc1-0:arm64. 714s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 714s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 714s Selecting previously unselected package libgomp1:arm64. 714s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 714s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 714s Selecting previously unselected package libitm1:arm64. 714s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 714s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 714s Selecting previously unselected package libasan8:arm64. 714s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 714s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 715s Selecting previously unselected package liblsan0:arm64. 715s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 715s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 715s Selecting previously unselected package libtsan2:arm64. 715s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 715s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 715s Selecting previously unselected package libubsan1:arm64. 715s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 715s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 715s Selecting previously unselected package libhwasan0:arm64. 715s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 715s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 715s Selecting previously unselected package libgcc-14-dev:arm64. 715s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 715s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 715s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 715s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 715s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 715s Selecting previously unselected package gcc-14. 715s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 715s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 715s Selecting previously unselected package gcc-aarch64-linux-gnu. 715s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 715s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 715s Selecting previously unselected package gcc. 715s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 715s Unpacking gcc (4:14.2.0-1ubuntu1) ... 716s Selecting previously unselected package libstdc++-14-dev:arm64. 716s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 716s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 716s Selecting previously unselected package g++-14-aarch64-linux-gnu. 716s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 716s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 716s Selecting previously unselected package g++-14. 716s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 716s Unpacking g++-14 (14.2.0-17ubuntu3) ... 716s Selecting previously unselected package g++-aarch64-linux-gnu. 716s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 716s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 716s Selecting previously unselected package g++. 716s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 716s Unpacking g++ (4:14.2.0-1ubuntu1) ... 716s Selecting previously unselected package build-essential. 716s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 716s Unpacking build-essential (12.10ubuntu1) ... 716s Selecting previously unselected package dctrl-tools. 716s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 716s Unpacking dctrl-tools (2.24-3build3) ... 716s Selecting previously unselected package fonts-dejavu-mono. 716s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 716s Unpacking fonts-dejavu-mono (2.37-8) ... 716s Selecting previously unselected package fonts-dejavu-core. 716s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 716s Unpacking fonts-dejavu-core (2.37-8) ... 716s Selecting previously unselected package fontconfig-config. 716s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 717s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 717s Selecting previously unselected package libfontconfig1:arm64. 717s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 717s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 717s Selecting previously unselected package fontconfig. 717s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 717s Unpacking fontconfig (2.15.0-2ubuntu1) ... 717s Selecting previously unselected package fonts-font-awesome. 717s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 717s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 717s Selecting previously unselected package fonts-glyphicons-halflings. 717s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 717s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 717s Selecting previously unselected package fonts-lmodern. 717s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 717s Unpacking fonts-lmodern (2.005-1) ... 717s Selecting previously unselected package fonts-mathjax. 717s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 717s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 717s Selecting previously unselected package libgfortran5:arm64. 717s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 717s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 717s Selecting previously unselected package libgfortran-14-dev:arm64. 717s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 717s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 717s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 717s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 717s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 717s Selecting previously unselected package gfortran-14. 718s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 718s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 718s Selecting previously unselected package gfortran-aarch64-linux-gnu. 718s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 718s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 718s Selecting previously unselected package gfortran. 718s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 718s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 718s Selecting previously unselected package icu-devtools. 718s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 718s Unpacking icu-devtools (76.1-1ubuntu2) ... 718s Selecting previously unselected package javascript-common. 718s Preparing to unpack .../042-javascript-common_12_all.deb ... 718s Unpacking javascript-common (12) ... 718s Selecting previously unselected package libio-string-perl. 718s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 718s Unpacking libio-string-perl (1.08-4) ... 718s Selecting previously unselected package liblatex-tounicode-perl. 718s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 718s Unpacking liblatex-tounicode-perl (0.55-1) ... 718s Selecting previously unselected package libbibtex-parser-perl. 718s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 718s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 718s Selecting previously unselected package libblas3:arm64. 718s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 718s Unpacking libblas3:arm64 (3.12.1-2) ... 718s Selecting previously unselected package libblas-dev:arm64. 718s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 718s Unpacking libblas-dev:arm64 (3.12.1-2) ... 718s Selecting previously unselected package libboost1.83-dev:arm64. 718s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 718s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 720s Selecting previously unselected package libboost-dev:arm64. 720s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 720s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 720s Selecting previously unselected package libbz2-dev:arm64. 720s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 720s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 720s Selecting previously unselected package libpixman-1-0:arm64. 720s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 720s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 720s Selecting previously unselected package libxcb-render0:arm64. 720s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 720s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 720s Selecting previously unselected package libxcb-shm0:arm64. 720s 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Unpacking libdeflate-dev:arm64 (1.23-1) ... 720s Selecting previously unselected package libgraphite2-3:arm64. 720s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 720s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 720s Selecting previously unselected package libharfbuzz0b:arm64. 720s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 720s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 720s Selecting previously unselected package x11-common. 720s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 720s Unpacking x11-common (1:7.7+23ubuntu3) ... 720s Selecting previously unselected package libice6:arm64. 721s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 721s Unpacking libice6:arm64 (2:1.1.1-1) ... 721s Selecting previously unselected package libicu-dev:arm64. 721s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 721s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 721s Selecting previously unselected package libjpeg-turbo8:arm64. 721s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 721s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 721s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 721s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 721s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 721s Selecting previously unselected package libjpeg8:arm64. 721s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 721s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 721s Selecting previously unselected package libjpeg8-dev:arm64. 721s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 721s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 721s Selecting previously unselected package libjpeg-dev:arm64. 721s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 721s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 721s Selecting previously unselected package libjs-bootstrap. 721s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 721s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 721s Selecting previously unselected package libjs-popper.js. 721s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 721s Unpacking libjs-popper.js (1.16.1+ds-6) ... 721s Selecting previously unselected package libjs-bootstrap4. 721s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 721s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 721s Selecting previously unselected package libjs-d3. 721s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 721s Unpacking libjs-d3 (3.5.17-4) ... 721s Selecting previously unselected package libjs-es5-shim. 721s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 721s Unpacking libjs-es5-shim (4.6.7-2) ... 721s Selecting previously unselected package libjs-highlight.js. 721s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 721s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 722s Selecting previously unselected package libjs-jquery. 722s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 722s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 722s Selecting previously unselected package libjs-jquery-datatables. 722s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 722s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 722s Selecting previously unselected package libjs-sifter.js. 722s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 722s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 722s Selecting previously unselected package libjs-microplugin.js. 722s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 722s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 722s Selecting previously unselected package libjs-jquery-selectize.js. 722s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2024.20240313.70630+ds-5build2) ... 722s Selecting previously unselected package liblapack3:arm64. 722s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 722s Unpacking liblapack3:arm64 (3.12.1-2) ... 722s Selecting previously unselected package liblapack-dev:arm64. 722s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 722s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 722s Selecting previously unselected package liblerc4:arm64. 722s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 722s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 722s Selecting previously unselected package liblua5.4-0:arm64. 722s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 722s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 722s Selecting previously unselected package libmpfi0:arm64. 723s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 723s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 723s Selecting previously unselected package libncurses-dev:arm64. 723s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 723s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 723s Selecting previously unselected package libthai-data. 723s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 723s Unpacking libthai-data (0.1.29-2build1) ... 723s Selecting previously unselected package libthai0:arm64. 723s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 723s Unpacking libthai0:arm64 (0.1.29-2build1) ... 723s Selecting previously unselected package libpango-1.0-0:arm64. 723s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 723s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 723s Selecting previously unselected package libpangoft2-1.0-0:arm64. 723s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 723s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 723s Selecting previously unselected package libpangocairo-1.0-0:arm64. 723s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 723s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 723s Selecting previously unselected package libpaper2:arm64. 723s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 723s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 723s Selecting previously unselected package libpaper-utils. 723s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 723s Unpacking libpaper-utils (2.2.5-0.3) ... 723s Selecting previously unselected package libpcre2-16-0:arm64. 723s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 723s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 723s Selecting previously unselected package libpcre2-32-0:arm64. 723s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 723s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 723s Selecting previously unselected package libpcre2-posix3:arm64. 723s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 723s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 723s Selecting previously unselected package libpcre2-dev:arm64. 723s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 723s Unpacking libpcre2-dev:arm64 (10.45-1) ... 723s Selecting previously unselected package libpkgconf3:arm64. 723s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 723s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 723s Selecting previously unselected package zlib1g-dev:arm64. 723s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 723s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 723s Selecting previously unselected package libpng-dev:arm64. 723s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 723s Unpacking libpng-dev:arm64 (1.6.47-1) ... 723s Selecting previously unselected package libpotrace0:arm64. 723s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 723s Unpacking libpotrace0:arm64 (1.16-2build1) ... 723s Selecting previously unselected package libptexenc1:arm64. 723s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 723s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 723s Selecting previously unselected package libreadline-dev:arm64. 723s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 723s Unpacking libreadline-dev:arm64 (8.2-6) ... 724s Selecting previously unselected package libsharpyuv0:arm64. 724s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 724s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 724s Selecting previously unselected package libsm6:arm64. 724s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 724s Unpacking libsm6:arm64 (2:1.2.4-1) ... 724s Selecting previously unselected package libsynctex2:arm64. 724s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 724s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 724s Selecting previously unselected package libtcl8.6:arm64. 724s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 724s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 724s Selecting previously unselected package libteckit0:arm64. 724s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 724s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 724s Selecting previously unselected package libtexlua53-5:arm64. 724s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 724s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 724s Selecting previously unselected package libjbig0:arm64. 724s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 724s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 724s Selecting previously unselected package libwebp7:arm64. 724s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 724s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 724s Selecting previously unselected package libtiff6:arm64. 724s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 724s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 724s Selecting previously unselected package libxft2:arm64. 724s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 724s Unpacking libxft2:arm64 (2.3.6-1build1) ... 724s Selecting previously unselected package libxss1:arm64. 724s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 724s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 724s Selecting previously unselected package libtk8.6:arm64. 724s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 724s Unpacking libtk8.6:arm64 (8.6.16-1) ... 724s Selecting previously unselected package libxt6t64:arm64. 724s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 724s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 724s Selecting previously unselected package libxmu6:arm64. 724s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 724s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 724s Selecting previously unselected package libxpm4:arm64. 724s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 724s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 724s Selecting previously unselected package libxaw7:arm64. 724s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 724s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 724s Selecting previously unselected package libxi6:arm64. 725s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 725s Unpacking libxi6:arm64 (2:1.8.2-1) ... 725s Selecting previously unselected package libzzip-0-13t64:arm64. 725s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 725s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 725s Selecting previously unselected package zip. 725s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 725s Unpacking zip (3.0-14ubuntu2) ... 725s Selecting previously unselected package unzip. 725s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 725s Unpacking unzip (6.0-28ubuntu6) ... 725s Selecting previously unselected package xdg-utils. 725s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 725s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 725s Selecting previously unselected package r-base-core. 725s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 725s Unpacking r-base-core (4.4.3-1) ... 725s Selecting previously unselected package r-cran-littler. 725s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 725s Unpacking r-cran-littler (0.3.20-2) ... 725s Selecting previously unselected package littler. 725s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 725s Unpacking littler (0.3.20-2) ... 725s Selecting previously unselected package node-bootstrap-sass. 725s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 725s Unpacking node-bootstrap-sass (3.4.3-2) ... 726s Selecting previously unselected package node-html5shiv. 726s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 726s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 726s Selecting previously unselected package node-normalize.css. 726s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 726s Unpacking node-normalize.css (8.0.1-5) ... 726s Selecting previously unselected package pandoc-data. 726s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 726s Unpacking pandoc-data (3.1.11.1-3build1) ... 726s Selecting previously unselected package pandoc. 726s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 726s Unpacking pandoc (3.1.11.1+ds-2) ... 727s Selecting previously unselected package liblzma-dev:arm64. 727s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 727s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 727s Selecting previously unselected package pkgconf-bin. 727s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 727s Unpacking pkgconf-bin (1.8.1-4) ... 727s Selecting previously unselected package pkgconf:arm64. 727s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 727s Unpacking pkgconf:arm64 (1.8.1-4) ... 727s Selecting previously unselected package libtirpc-dev:arm64. 727s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 727s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 727s Selecting previously unselected package r-base-dev. 727s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 727s Unpacking r-base-dev (4.4.3-1) ... 727s Selecting previously unselected package pkg-r-autopkgtest. 727s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 727s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 727s Selecting previously unselected package r-bioc-biocgenerics. 727s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 727s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 727s Selecting previously unselected package r-bioc-biobase. 727s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 727s Unpacking r-bioc-biobase (2.66.0-2) ... 727s Selecting previously unselected package r-bioc-zlibbioc. 727s Preparing to unpack .../145-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 727s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 727s Selecting previously unselected package r-bioc-affyio. 727s Preparing to unpack .../146-r-bioc-affyio_1.76.0-2_arm64.deb ... 727s Unpacking r-bioc-affyio (1.76.0-2) ... 727s Selecting previously unselected package r-cran-biocmanager. 727s Preparing to unpack .../147-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 727s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 727s Selecting previously unselected package r-bioc-preprocesscore. 727s Preparing to unpack .../148-r-bioc-preprocesscore_1.68.0+ds-2_arm64.deb ... 727s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 727s Selecting previously unselected package r-bioc-affy. 727s Preparing to unpack .../149-r-bioc-affy_1.84.0-2_arm64.deb ... 727s Unpacking r-bioc-affy (1.84.0-2) ... 727s Selecting previously unselected package r-bioc-s4vectors. 728s Preparing to unpack .../150-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 728s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 728s Selecting previously unselected package r-bioc-iranges. 728s Preparing to unpack .../151-r-bioc-iranges_2.40.1-2_arm64.deb ... 728s Unpacking r-bioc-iranges (2.40.1-2) ... 728s Selecting previously unselected package r-cran-dbi. 728s Preparing to unpack .../152-r-cran-dbi_1.2.3-1_all.deb ... 728s Unpacking r-cran-dbi (1.2.3-1) ... 728s Selecting previously unselected package r-cran-bit. 728s Preparing to unpack .../153-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 728s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 728s Selecting previously unselected package r-cran-bit64. 728s Preparing to unpack .../154-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 728s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 728s Selecting previously unselected package r-cran-rlang. 728s Preparing to unpack .../155-r-cran-rlang_1.1.5-1_arm64.deb ... 728s Unpacking r-cran-rlang (1.1.5-1) ... 728s Selecting previously unselected package r-cran-cli. 728s Preparing to unpack .../156-r-cran-cli_3.6.4-1_arm64.deb ... 728s Unpacking r-cran-cli (3.6.4-1) ... 728s Selecting previously unselected package r-cran-glue. 728s Preparing to unpack .../157-r-cran-glue_1.8.0-1_arm64.deb ... 728s Unpacking r-cran-glue (1.8.0-1) ... 728s Selecting previously unselected package r-cran-lifecycle. 728s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 728s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 728s Selecting previously unselected package r-cran-vctrs. 728s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 728s Unpacking r-cran-vctrs (0.6.5-1) ... 728s Selecting previously unselected package r-cran-blob. 728s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 728s Unpacking r-cran-blob (1.2.4-1) ... 728s Selecting previously unselected package r-cran-fastmap. 728s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_arm64.deb ... 728s Unpacking r-cran-fastmap (1.2.0-1) ... 728s Selecting previously unselected package r-cran-cachem. 728s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_arm64.deb ... 728s Unpacking r-cran-cachem (1.1.0-1) ... 728s Selecting previously unselected package r-cran-memoise. 728s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 728s Unpacking r-cran-memoise (2.0.1-1) ... 728s Selecting previously unselected package r-cran-pkgconfig. 728s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 728s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 728s Selecting previously unselected package r-cran-plogr. 729s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 729s Unpacking r-cran-plogr (0.2.0-3build1) ... 729s Selecting previously unselected package r-cran-cpp11. 729s Preparing to unpack .../166-r-cran-cpp11_0.5.2-1_all.deb ... 729s Unpacking r-cran-cpp11 (0.5.2-1) ... 729s Selecting previously unselected package r-cran-rsqlite. 729s Preparing to unpack .../167-r-cran-rsqlite_2.3.9-1_arm64.deb ... 729s Unpacking r-cran-rsqlite (2.3.9-1) ... 729s Selecting previously unselected package r-cran-curl. 729s Preparing to unpack .../168-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 729s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 729s Selecting previously unselected package r-cran-jsonlite. 729s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 729s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 729s Selecting previously unselected package r-cran-mime. 729s Preparing to unpack .../170-r-cran-mime_0.12-2_arm64.deb ... 729s Unpacking r-cran-mime (0.12-2) ... 729s Selecting previously unselected package r-cran-sys. 729s Preparing to unpack .../171-r-cran-sys_3.4.3-1_arm64.deb ... 729s Unpacking r-cran-sys (3.4.3-1) ... 729s Selecting previously unselected package r-cran-askpass. 729s Preparing to unpack .../172-r-cran-askpass_1.2.1-1_arm64.deb ... 729s Unpacking r-cran-askpass (1.2.1-1) ... 729s Selecting previously unselected package r-cran-openssl. 729s Preparing to unpack .../173-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 729s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 729s Selecting previously unselected package r-cran-r6. 729s Preparing to unpack .../174-r-cran-r6_2.6.1-1_all.deb ... 729s Unpacking r-cran-r6 (2.6.1-1) ... 729s Selecting previously unselected package r-cran-httr. 729s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 729s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 729s Selecting previously unselected package r-cran-png. 729s Preparing to unpack .../176-r-cran-png_0.1-8-1build2_arm64.deb ... 729s Unpacking r-cran-png (0.1-8-1build2) ... 729s Selecting previously unselected package r-bioc-xvector. 729s Preparing to unpack .../177-r-bioc-xvector_0.46.0-2_arm64.deb ... 729s Unpacking r-bioc-xvector (0.46.0-2) ... 729s Selecting previously unselected package r-bioc-ucsc.utils. 729s Preparing to unpack .../178-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 729s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 729s Selecting previously unselected package r-bioc-genomeinfodbdata. 729s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 729s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 729s Selecting previously unselected package r-bioc-genomeinfodb. 729s Preparing to unpack .../180-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 729s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 730s Selecting previously unselected package r-cran-crayon. 730s Preparing to unpack .../181-r-cran-crayon_1.5.3-1_all.deb ... 730s Unpacking r-cran-crayon (1.5.3-1) ... 730s Selecting previously unselected package r-bioc-biostrings. 730s Preparing to unpack .../182-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 730s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 730s Selecting previously unselected package r-bioc-keggrest. 730s Preparing to unpack .../183-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 730s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 730s Selecting previously unselected package r-bioc-annotationdbi. 730s Preparing to unpack .../184-r-bioc-annotationdbi_1.68.0-2_all.deb ... 730s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 730s Selecting previously unselected package r-bioc-biocio. 730s Preparing to unpack .../185-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 730s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 730s Selecting previously unselected package r-cran-formatr. 730s Preparing to unpack .../186-r-cran-formatr_1.14-2_all.deb ... 730s Unpacking r-cran-formatr (1.14-2) ... 730s Selecting previously unselected package r-cran-lambda.r. 730s Preparing to unpack .../187-r-cran-lambda.r_1.2.4-2build1_all.deb ... 730s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 730s Selecting previously unselected package r-cran-futile.options. 730s Preparing to unpack .../188-r-cran-futile.options_1.0.1-3build1_all.deb ... 730s Unpacking r-cran-futile.options (1.0.1-3build1) ... 730s Selecting previously unselected package r-cran-futile.logger. 730s Preparing to unpack .../189-r-cran-futile.logger_1.4.3-4build1_all.deb ... 730s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 730s Selecting previously unselected package r-cran-snow. 730s Preparing to unpack .../190-r-cran-snow_1%3a0.4.4-2_all.deb ... 730s Unpacking r-cran-snow (1:0.4.4-2) ... 730s Selecting previously unselected package r-cran-codetools. 730s Preparing to unpack .../191-r-cran-codetools_0.2-20-1_all.deb ... 730s Unpacking r-cran-codetools (0.2-20-1) ... 730s Selecting previously unselected package r-cran-bh. 730s Preparing to unpack .../192-r-cran-bh_1.84.0-1_all.deb ... 730s Unpacking r-cran-bh (1.84.0-1) ... 730s Selecting previously unselected package r-bioc-biocparallel. 730s Preparing to unpack .../193-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 730s Unpacking r-bioc-biocparallel (1.40.0-2) ... 731s Selecting previously unselected package r-cran-base64enc. 731s Preparing to unpack .../194-r-cran-base64enc_0.1-3-3_arm64.deb ... 731s Unpacking r-cran-base64enc (0.1-3-3) ... 731s Selecting previously unselected package r-cran-digest. 731s Preparing to unpack .../195-r-cran-digest_0.6.37-1_arm64.deb ... 731s Unpacking r-cran-digest (0.6.37-1) ... 731s Selecting previously unselected package r-cran-htmltools. 731s Preparing to unpack .../196-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 731s Unpacking r-cran-htmltools (0.5.8.1-1) ... 731s Selecting previously unselected package r-cran-evaluate. 731s Preparing to unpack .../197-r-cran-evaluate_1.0.3-1_all.deb ... 731s Unpacking r-cran-evaluate (1.0.3-1) ... 731s Selecting previously unselected package r-cran-xfun. 731s Preparing to unpack .../198-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 731s Unpacking r-cran-xfun (0.51+dfsg-1) ... 731s Selecting previously unselected package r-cran-highr. 731s Preparing to unpack .../199-r-cran-highr_0.11+dfsg-1_all.deb ... 731s Unpacking r-cran-highr (0.11+dfsg-1) ... 731s Selecting previously unselected package r-cran-yaml. 731s Preparing to unpack .../200-r-cran-yaml_2.3.10-1_arm64.deb ... 731s Unpacking r-cran-yaml (2.3.10-1) ... 731s Selecting previously unselected package libjs-mathjax. 731s Preparing to unpack .../201-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 731s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 732s Selecting previously unselected package r-cran-knitr. 732s Preparing to unpack .../202-r-cran-knitr_1.49+dfsg-1_all.deb ... 732s Unpacking r-cran-knitr (1.49+dfsg-1) ... 732s Selecting previously unselected package r-cran-jquerylib. 732s Preparing to unpack .../203-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 732s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 732s Selecting previously unselected package r-cran-fs. 732s Preparing to unpack .../204-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 732s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 732s Selecting previously unselected package r-cran-rappdirs. 732s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_arm64.deb ... 732s Unpacking r-cran-rappdirs (0.3.3-1) ... 732s Selecting previously unselected package r-cran-sass. 732s Preparing to unpack .../206-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 732s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 732s Selecting previously unselected package r-cran-bslib. 732s Preparing to unpack .../207-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 732s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 732s Selecting previously unselected package r-cran-fontawesome. 732s Preparing to unpack .../208-r-cran-fontawesome_0.5.3-1_all.deb ... 732s Unpacking r-cran-fontawesome (0.5.3-1) ... 732s Selecting previously unselected package r-cran-tinytex. 732s Preparing to unpack .../209-r-cran-tinytex_0.56-1_all.deb ... 732s Unpacking r-cran-tinytex (0.56-1) ... 732s Selecting previously unselected package libjs-modernizr. 732s Preparing to unpack .../210-libjs-modernizr_3.13.0-0.1_all.deb ... 732s Unpacking libjs-modernizr (3.13.0-0.1) ... 732s Selecting previously unselected package r-cran-pkgkitten. 732s Preparing to unpack .../211-r-cran-pkgkitten_0.2.4-1_all.deb ... 732s Unpacking r-cran-pkgkitten (0.2.4-1) ... 732s Selecting previously unselected package r-cran-rcpp. 732s Preparing to unpack .../212-r-cran-rcpp_1.0.14-1_arm64.deb ... 732s Unpacking r-cran-rcpp (1.0.14-1) ... 733s Selecting previously unselected package r-cran-later. 733s Preparing to unpack .../213-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 733s Unpacking r-cran-later (1.4.1+dfsg-1) ... 733s Selecting previously unselected package r-cran-magrittr. 733s Preparing to unpack .../214-r-cran-magrittr_2.0.3-1_arm64.deb ... 733s Unpacking r-cran-magrittr (2.0.3-1) ... 733s Selecting previously unselected package r-cran-promises. 733s Preparing to unpack .../215-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 733s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 733s Selecting previously unselected package r-cran-httpuv. 733s Preparing to unpack .../216-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 733s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 733s Selecting previously unselected package r-cran-xtable. 733s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 733s Unpacking r-cran-xtable (1:1.8-4-2) ... 733s Selecting previously unselected package r-cran-sourcetools. 733s Preparing to unpack .../218-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 733s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 733s Selecting previously unselected package r-cran-withr. 733s Preparing to unpack .../219-r-cran-withr_3.0.2+dfsg-1_all.deb ... 733s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 733s Selecting previously unselected package r-cran-commonmark. 733s Preparing to unpack .../220-r-cran-commonmark_1.9.2-2_arm64.deb ... 733s Unpacking r-cran-commonmark (1.9.2-2) ... 733s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 733s Preparing to unpack .../221-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 733s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 733s Selecting previously unselected package r-cran-shiny. 733s Preparing to unpack .../222-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 733s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 733s Selecting previously unselected package r-cran-rmarkdown. 734s Preparing to unpack .../223-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 734s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 734s Selecting previously unselected package r-cran-bookdown. 734s Preparing to unpack .../224-r-cran-bookdown_0.42+dfsg-1_all.deb ... 734s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 734s Selecting previously unselected package tex-common. 734s Preparing to unpack .../225-tex-common_6.19_all.deb ... 734s Unpacking tex-common (6.19) ... 734s Selecting previously unselected package t1utils. 734s Preparing to unpack .../226-t1utils_1.41-4build3_arm64.deb ... 734s Unpacking t1utils (1.41-4build3) ... 734s Selecting previously unselected package texlive-binaries. 734s Preparing to unpack .../227-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 734s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 734s Selecting previously unselected package texlive-base. 734s Preparing to unpack .../228-texlive-base_2024.20250114-1_all.deb ... 734s Unpacking texlive-base (2024.20250114-1) ... 735s Selecting previously unselected package texlive-latex-base. 735s Preparing to unpack .../229-texlive-latex-base_2024.20250114-1_all.deb ... 735s Unpacking texlive-latex-base (2024.20250114-1) ... 735s Selecting previously unselected package texlive-bibtex-extra. 736s Preparing to unpack .../230-texlive-bibtex-extra_2024.20250114-1_all.deb ... 736s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 738s Selecting previously unselected package r-bioc-biocversion. 738s Preparing to unpack .../231-r-bioc-biocversion_3.20.0-2_all.deb ... 738s Unpacking r-bioc-biocversion (3.20.0-2) ... 738s Selecting previously unselected package r-bioc-biocstyle. 738s Preparing to unpack .../232-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 738s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 738s Selecting previously unselected package r-bioc-genomicranges. 738s Preparing to unpack .../233-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 738s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 738s Selecting previously unselected package r-cran-xml. 738s Preparing to unpack .../234-r-cran-xml_3.99-0.18-1_arm64.deb ... 738s Unpacking r-cran-xml (3.99-0.18-1) ... 739s Selecting previously unselected package r-cran-bitops. 739s Preparing to unpack .../235-r-cran-bitops_1.0-9-1_arm64.deb ... 739s Unpacking r-cran-bitops (1.0-9-1) ... 739s Selecting previously unselected package r-bioc-rhtslib. 739s Preparing to unpack .../236-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 739s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 739s Selecting previously 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Setting up dctrl-tools (2.24-3build3) ... 742s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 742s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 742s Setting up libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 742s Setting up libbz2-dev:arm64 (1.0.8-6) ... 742s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 742s Setting up libpotrace0:arm64 (1.16-2build1) ... 742s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 742s Setting up libice6:arm64 (2:1.1.1-1) ... 742s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 742s Setting up liblapack3:arm64 (3.12.1-2) ... 742s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 742s Setting up libpcre2-dev:arm64 (10.45-1) ... 742s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 743s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 743s Setting up libpng-dev:arm64 (1.6.47-1) ... 743s Setting up libpaper-utils (2.2.5-0.3) ... 743s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 743s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 743s Setting up pkgconf:arm64 (1.8.1-4) ... 743s Setting up libthai0:arm64 (0.1.29-2build1) ... 743s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 743s Setting up libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 743s Setting up pandoc (3.1.11.1+ds-2) ... 743s Setting up liblapack-dev:arm64 (3.12.1-2) ... 743s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 743s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 743s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 743s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 743s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 743s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 743s Setting up libstdc++-14-dev:arm64 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Setting up r-cran-rappdirs (0.3.3-1) ... 747s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 747s Setting up r-cran-littler (0.3.20-2) ... 747s Setting up r-cran-bh (1.84.0-1) ... 747s Setting up r-cran-fs (1.6.5+dfsg-1) ... 747s Setting up r-cran-rcpp (1.0.14-1) ... 747s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 747s Setting up r-cran-codetools (0.2-20-1) ... 747s Setting up r-cran-brio (1.1.5-1) ... 747s Setting up r-cran-diffobj (0.3.5-1) ... 747s Setting up r-bioc-biocgenerics (0.52.0-2) ... 747s Setting up r-cran-rlang (1.1.5-1) ... 747s Setting up r-cran-matrixstats (1.5.0-1) ... 747s Setting up littler (0.3.20-2) ... 747s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 747s Setting up r-cran-xfun (0.51+dfsg-1) ... 747s Setting up r-cran-sys (3.4.3-1) ... 747s Setting up r-cran-plogr (0.2.0-3build1) ... 747s Setting up r-cran-withr (3.0.2+dfsg-1) ... 747s Setting up r-cran-processx (3.8.6-1) ... 747s Setting up r-cran-mime (0.12-2) ... 747s Setting up r-cran-praise (1.0.0-4build1) ... 747s Setting up r-cran-base64enc (0.1-3-3) ... 747s Setting up r-cran-abind (1.4-8-1) ... 747s Setting up r-cran-digest (0.6.37-1) ... 747s Setting up r-cran-yaml (2.3.10-1) ... 747s Setting up r-cran-lambda.r (1.2.4-2build1) ... 747s Setting up r-cran-evaluate (1.0.3-1) ... 747s Setting up r-cran-dbi (1.2.3-1) ... 747s Setting up r-cran-highr (0.11+dfsg-1) ... 747s Setting up r-cran-snow (1:0.4.4-2) ... 747s Setting up r-cran-glue (1.8.0-1) ... 747s Setting up r-cran-bit (4.6.0+dfsg-1) ... 747s Setting up r-cran-xtable (1:1.8-4-2) ... 747s Setting up r-cran-cli (3.6.4-1) ... 747s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 747s Setting up r-cran-bitops (1.0-9-1) ... 747s Setting up r-bioc-biocversion (3.20.0-2) ... 747s Setting up r-cran-rprojroot (2.0.4-2) ... 747s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 747s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 747s Setting up gcc (4:14.2.0-1ubuntu1) ... 747s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 747s Setting up r-cran-askpass (1.2.1-1) ... 747s Setting up r-cran-fastmap (1.2.0-1) ... 747s Setting up r-cran-png (0.1-8-1build2) ... 747s Setting up r-bioc-biobase (2.66.0-2) ... 747s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 747s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 747s Setting up texlive-latex-base (2024.20250114-1) ... 747s Setting up r-cran-rex (1.2.1-1) ... 747s Setting up r-cran-cpp11 (0.5.2-1) ... 747s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 747s Setting up r-cran-runit (0.4.33-1) ... 747s Setting up r-cran-futile.logger (1.4.3-4build1) ... 747s Setting up r-cran-waldo (0.6.1-2) ... 747s Setting up r-cran-later (1.4.1+dfsg-1) ... 747s Setting up r-cran-matrix (1.7-3-1) ... 747s Setting up r-cran-htmltools (0.5.8.1-1) ... 747s Setting up r-cran-tinytex (0.56-1) ... 747s Setting up r-cran-knitr (1.49+dfsg-1) ... 747s Setting up g++ (4:14.2.0-1ubuntu1) ... 747s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 747s Setting up r-cran-cachem (1.1.0-1) ... 747s Setting up r-cran-sass (0.4.9+dfsg-1) ... 747s Setting up build-essential (12.10ubuntu1) ... 747s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 747s Setting up r-bioc-iranges (2.40.1-2) ... 747s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 747s Setting up r-cran-restfulr (0.0.15-1) ... 747s Setting up r-cran-vctrs (0.6.5-1) ... 747s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 747s Setting up r-bioc-affyio (1.76.0-2) ... 747s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 747s Setting up r-bioc-biocparallel (1.40.0-2) ... 747s Setting up r-cran-callr (3.7.6-1) ... 747s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 747s Setting up r-cran-desc (1.4.3-1) ... 747s Setting up r-cran-fontawesome (0.5.3-1) ... 747s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 747s Setting up gfortran (4:14.2.0-1ubuntu1) ... 747s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 747s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 747s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 747s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 747s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 747s Setting up texlive-bibtex-extra (2024.20250114-1) ... 747s Setting up r-cran-httr (1.4.7+dfsg-1) ... 747s Setting up r-bioc-affy (1.84.0-2) ... 747s Setting up r-cran-memoise (2.0.1-1) ... 747s Setting up r-cran-covr (3.6.4+dfsg-1) ... 747s Setting up r-cran-promises (1.3.2+dfsg-1) ... 747s Setting up r-cran-blob (1.2.4-1) ... 747s Setting up r-bioc-xvector (0.46.0-2) ... 747s Setting up r-cran-pkgbuild (1.4.6-1) ... 747s Setting up r-cran-rsqlite (2.3.9-1) ... 747s Setting up r-cran-pkgload (1.4.0-1) ... 747s Setting up r-base-dev (4.4.3-1) ... 747s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 747s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 747s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 747s Setting up r-cran-testthat (3.2.3-1) ... 747s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 747s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 747s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 747s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 747s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 747s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 747s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 747s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 747s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 747s Setting up r-cran-bookdown (0.42+dfsg-1) ... 747s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 747s Setting up r-bioc-pwalign (1.2.0-2) ... 747s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 747s Setting up r-bioc-annotationdbi (1.68.0-2) ... 747s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 747s Setting up r-bioc-genomicalignments (1.42.0-2) ... 747s Setting up r-bioc-rtracklayer (1.66.0-2) ... 747s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 747s Setting up r-bioc-bsgenome (1.74.0-2) ... 747s Processing triggers for libc-bin (2.41-1ubuntu2) ... 747s Processing triggers for man-db (2.13.0-1) ... 749s Processing triggers for install-info (7.1.1-1) ... 749s Processing triggers for tex-common (6.19) ... 750s Running updmap-sys. This may take some time... done. 750s Running mktexlsr /var/lib/texmf ... done. 750s Building format(s) --all. 788s This may take some time... done. 790s autopkgtest [15:49:14]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 790s autopkgtest [15:49:14]: test pkg-r-autopkgtest: [----------------------- 791s Test: Try to load the R library Biostrings 791s 791s R version 4.4.3 (2025-02-28) -- "Trophy Case" 791s Copyright (C) 2025 The R Foundation for Statistical Computing 791s Platform: aarch64-unknown-linux-gnu 791s 791s R is free software and comes with ABSOLUTELY NO WARRANTY. 791s You are welcome to redistribute it under certain conditions. 791s Type 'license()' or 'licence()' for distribution details. 791s 791s R is a collaborative project with many contributors. 791s Type 'contributors()' for more information and 791s 'citation()' on how to cite R or R packages in publications. 791s 791s Type 'demo()' for some demos, 'help()' for on-line help, or 791s 'help.start()' for an HTML browser interface to help. 791s Type 'q()' to quit R. 791s 791s > library('Biostrings') 791s Loading required package: BiocGenerics 791s 791s Attaching package: ‘BiocGenerics’ 791s 791s The following objects are masked from ‘package:stats’: 791s 791s IQR, mad, sd, var, xtabs 791s 791s The following objects are masked from ‘package:base’: 791s 791s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 791s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 791s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 791s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 791s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 791s table, tapply, union, unique, unsplit, which.max, which.min 791s 791s Loading required package: S4Vectors 791s Loading required package: stats4 792s 792s Attaching package: ‘S4Vectors’ 792s 792s The following object is masked from ‘package:utils’: 792s 792s findMatches 792s 792s The following objects are masked from ‘package:base’: 792s 792s expand.grid, I, unname 792s 792s Loading required package: IRanges 792s Loading required package: XVector 793s Loading required package: GenomeInfoDb 793s > 793s > 793s 793s Attaching package: ‘Biostrings’ 793s 793s The following object is masked from ‘package:base’: 793s 793s strsplit 793s 793s Other tests are currently unsupported! 793s They will be progressively added. 794s autopkgtest [15:49:18]: test pkg-r-autopkgtest: -----------------------] 794s pkg-r-autopkgtest PASS 794s autopkgtest [15:49:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 795s autopkgtest [15:49:19]: @@@@@@@@@@@@@@@@@@@@ summary 795s pkg-r-autopkgtest PASS 814s nova [W] Using flock in prodstack6-arm64 814s Creating nova instance adt-plucky-arm64-r-bioc-biostrings-20250315-150427-juju-7f2275-prod-proposed-migration-environment-20-3ff547c0-ec5c-49cf-b0a6-2efe53bc3872 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 814s nova [W] Timed out waiting for 90405eb7-fbcd-4a71-afe4-a1149dce8a98 to get deleted.