0s autopkgtest [10:31:17]: starting date and time: 2025-03-15 10:31:17+0000 0s autopkgtest [10:31:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [10:31:17]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.an_r8vs3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biobase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-9.secgroup --name adt-plucky-arm64-r-bioc-biobase-20250315-103116-juju-7f2275-prod-proposed-migration-environment-15-01c32814-707a-4c47-9893-ee4972ef5b32 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 142s autopkgtest [10:33:39]: testbed dpkg architecture: arm64 142s autopkgtest [10:33:39]: testbed apt version: 2.9.33 143s autopkgtest [10:33:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 143s autopkgtest [10:33:40]: testbed release detected to be: None 144s autopkgtest [10:33:41]: updating testbed package index (apt update) 144s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 144s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 144s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 144s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 145s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [51.3 kB] 145s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.9 kB] 145s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [437 kB] 145s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [83.0 kB] 145s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1576 B] 145s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 145s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [380 kB] 145s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [11.9 kB] 145s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [12.1 kB] 145s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [216 B] 145s Fetched 1120 kB in 1s (1001 kB/s) 147s Reading package lists... 148s + lsb_release --codename --short 148s + RELEASE=plucky 148s + cat 148s + [ plucky != trusty ] 148s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade... 149s Calculating upgrade... 149s The following packages will be upgraded: 149s python3-jinja2 strace 150s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 608 kB of archives. 150s After this operation, 11.3 kB of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 150s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 151s Fetched 608 kB in 1s (820 kB/s) 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 151s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 151s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 151s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 151s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 152s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 152s Setting up strace (6.13+ds-1ubuntu1) ... 152s Processing triggers for man-db (2.13.0-1) ... 153s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 153s + /usr/lib/apt/apt-helper analyze-pattern ?true 153s + uname -r 153s + sed s/\./\\./g 153s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 153s + apt list ?obsolete 153s + tail -n+2 153s + cut -d/ -f1 153s + grep -v ^linux-.*6\.14\.0-10-generic.* 154s + true 154s + obsolete_pkgs= 154s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s Solving dependencies... 156s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 156s + grep -q trusty /etc/lsb-release 156s + [ ! -d /usr/share/doc/unattended-upgrades ] 156s + [ ! -d /usr/share/doc/lxd ] 156s + [ ! -d /usr/share/doc/lxd-client ] 156s + [ ! -d /usr/share/doc/snapd ] 156s + type iptables 156s + cat 156s + chmod 755 /etc/rc.local 156s + . /etc/rc.local 156s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 156s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 156s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 156s + uname -m 156s + [ aarch64 = ppc64le ] 156s + [ -d /run/systemd/system ] 156s + systemd-detect-virt --quiet --vm 156s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 156s + cat 156s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 156s + echo COMPRESS=lz4 156s autopkgtest [10:33:53]: upgrading testbed (apt dist-upgrade and autopurge) 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s Entering ResolveByKeep 161s 161s Calculating upgrade... 162s The following packages will be upgraded: 162s libc-bin libc-dev-bin libc6 libc6-dev locales 162s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 9530 kB of archives. 162s After this operation, 0 B of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 164s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 167s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 168s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 172s Preconfiguring packages ... 172s Fetched 9530 kB in 9s (1022 kB/s) 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 172s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 172s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc6:arm64 (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 173s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc-bin (2.41-1ubuntu2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 174s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 174s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up locales (2.41-1ubuntu2) ... 175s Generating locales (this might take a while)... 177s en_US.UTF-8... done 177s Generation complete. 177s Setting up libc-dev-bin (2.41-1ubuntu2) ... 177s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 177s Processing triggers for man-db (2.13.0-1) ... 178s Processing triggers for systemd (257.3-1ubuntu3) ... 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s Solving dependencies... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [10:34:20]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 183s autopkgtest [10:34:20]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biobase 187s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (dsc) [2083 B] 187s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (tar) [1979 kB] 187s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (diff) [8488 B] 187s gpgv: Signature made Sat Jan 11 19:34:54 2025 UTC 187s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 187s gpgv: issuer "crusoe@debian.org" 187s gpgv: Can't check signature: No public key 187s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biobase_2.66.0-2.dsc: no acceptable signature found 187s autopkgtest [10:34:24]: testing package r-bioc-biobase version 2.66.0-2 188s autopkgtest [10:34:25]: build not needed 194s autopkgtest [10:34:31]: test pkg-r-autopkgtest: preparing testbed 194s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 196s The following NEW packages will be installed: 196s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 196s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 196s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 196s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 196s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 196s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 196s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 196s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 196s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 196s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 196s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 196s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 196s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 196s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 196s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 196s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 196s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 196s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 196s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 196s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 196s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 196s libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 196s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 196s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 196s libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 196s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 196s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-all 196s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion 196s r-bioc-golubesets r-bioc-limma r-cran-base64enc r-cran-biocmanager 196s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark 196s r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap 196s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 196s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 196s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 196s r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 196s r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny 196s r-cran-sourcetools r-cran-statmod r-cran-tinytex r-cran-withr r-cran-xfun 196s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 196s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 196s xdg-utils zip zlib1g-dev 196s 0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 334 MB of archives. 196s After this operation, 1044 MB of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 197s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 197s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 208s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 208s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 208s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 208s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 208s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 208s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 209s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 211s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 212s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 217s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 219s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 239s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 239s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 239s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 239s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 242s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 253s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 253s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 253s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 253s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 253s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 253s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 253s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 254s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 254s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 254s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 255s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 255s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 255s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 260s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 262s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 262s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 263s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 274s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 274s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 274s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 274s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 274s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 274s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 274s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 274s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 274s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 274s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 275s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 275s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 275s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 275s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 275s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 275s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 275s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 275s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 276s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 276s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 276s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 276s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 276s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 276s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 288s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 288s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 289s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 289s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 289s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 289s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 289s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 289s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 289s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 289s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 289s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 290s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 290s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 290s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 290s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 290s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 290s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 290s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 290s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 290s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 291s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 291s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 293s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 297s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 297s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 298s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 298s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 298s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 298s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 298s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB] 298s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB] 298s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB] 298s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 298s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 298s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 299s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 299s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 299s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 299s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 300s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 301s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 301s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 301s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 301s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 301s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 301s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 301s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 301s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 302s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 302s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 302s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 302s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 302s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 303s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 303s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 303s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 303s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 303s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 303s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 303s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 304s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 304s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 304s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 304s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 304s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 304s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 333s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 333s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 333s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 333s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 333s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 333s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 333s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 362s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 363s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 363s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 363s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 363s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 363s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 363s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 363s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 365s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-all all 1.48.0-2 [11.5 MB] 376s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 376s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 376s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 376s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 378s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 378s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 378s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 378s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 378s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 379s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 383s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 383s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 384s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 384s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 384s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 385s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 385s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 385s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 386s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 386s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 386s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 386s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 386s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 387s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 390s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 391s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 392s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 392s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 392s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 393s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 393s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 394s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 394s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 394s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 395s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 395s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 395s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 395s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 395s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 395s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 398s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 399s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 400s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 400s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 400s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 400s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 406s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 425s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 426s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 495s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 495s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 495s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-golubesets all 1.48.0-2 [4524 kB] 500s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 500s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 502s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 503s Preconfiguring packages ... 503s Fetched 334 MB in 5min 6s (1091 kB/s) 503s Selecting previously unselected package libisl23:arm64. 503s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 503s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 503s Unpacking libisl23:arm64 (0.27-1) ... 503s Selecting previously unselected package libmpc3:arm64. 503s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 503s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 503s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 503s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 503s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 504s Selecting previously unselected package cpp-14. 504s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 504s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 504s Selecting previously unselected package cpp-aarch64-linux-gnu. 504s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 504s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 504s Selecting previously unselected package cpp. 504s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 504s Unpacking cpp (4:14.2.0-1ubuntu1) ... 504s Selecting previously unselected package libcc1-0:arm64. 504s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libgomp1:arm64. 504s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libitm1:arm64. 504s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libasan8:arm64. 504s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package liblsan0:arm64. 504s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libtsan2:arm64. 504s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libubsan1:arm64. 504s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libhwasan0:arm64. 504s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 504s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 504s Selecting previously unselected package libgcc-14-dev:arm64. 504s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 504s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 504s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 504s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 504s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 505s Selecting previously unselected package gcc-14. 505s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 505s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 505s Selecting previously unselected package gcc-aarch64-linux-gnu. 505s Preparing to unpack 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fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 506s Selecting previously unselected package fonts-lmodern. 506s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 506s Unpacking fonts-lmodern (2.005-1) ... 506s Selecting previously unselected package fonts-mathjax. 506s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 506s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 506s Selecting previously unselected package libgfortran5:arm64. 506s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 507s Selecting previously unselected package libgfortran-14-dev:arm64. 507s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 507s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 507s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 507s 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javascript-common (12) ... 507s Selecting previously unselected package libio-string-perl. 507s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 507s Unpacking libio-string-perl (1.08-4) ... 507s Selecting previously unselected package liblatex-tounicode-perl. 507s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 507s Unpacking liblatex-tounicode-perl (0.55-1) ... 507s Selecting previously unselected package libbibtex-parser-perl. 507s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 507s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 507s Selecting previously unselected package libblas3:arm64. 507s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 507s Unpacking libblas3:arm64 (3.12.1-2) ... 507s Selecting previously unselected package libblas-dev:arm64. 507s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 507s Unpacking libblas-dev:arm64 (3.12.1-2) ... 507s Selecting previously unselected package libbz2-dev:arm64. 507s Preparing to unpack .../048-libbz2-dev_1.0.8-6_arm64.deb ... 507s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 507s Selecting previously unselected package libpixman-1-0:arm64. 507s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_arm64.deb ... 507s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 507s Selecting previously unselected package libxcb-render0:arm64. 507s Preparing to unpack .../050-libxcb-render0_1.17.0-2_arm64.deb ... 507s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 507s Selecting previously unselected package libxcb-shm0:arm64. 507s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_arm64.deb ... 507s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 507s Selecting previously unselected package libxrender1:arm64. 508s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 508s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 508s Selecting previously unselected package libcairo2:arm64. 508s Preparing to unpack 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(1.8.1-4) ... 510s Selecting previously unselected package zlib1g-dev:arm64. 510s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 510s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 510s Selecting previously unselected package libpng-dev:arm64. 510s Preparing to unpack .../102-libpng-dev_1.6.47-1_arm64.deb ... 510s Unpacking libpng-dev:arm64 (1.6.47-1) ... 510s Selecting previously unselected package libpotrace0:arm64. 511s Preparing to unpack .../103-libpotrace0_1.16-2build1_arm64.deb ... 511s Unpacking libpotrace0:arm64 (1.16-2build1) ... 511s Selecting previously unselected package libptexenc1:arm64. 511s Preparing to unpack .../104-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 511s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 511s Selecting previously unselected package libreadline-dev:arm64. 511s Preparing to unpack .../105-libreadline-dev_8.2-6_arm64.deb ... 511s Unpacking libreadline-dev:arm64 (8.2-6) ... 511s Selecting previously unselected package libsharpyuv0:arm64. 511s Preparing to unpack .../106-libsharpyuv0_1.5.0-0.1_arm64.deb ... 511s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 511s Selecting previously unselected package libsm6:arm64. 511s Preparing to unpack .../107-libsm6_2%3a1.2.4-1_arm64.deb ... 511s Unpacking libsm6:arm64 (2:1.2.4-1) ... 511s Selecting previously unselected package libsynctex2:arm64. 511s Preparing to unpack .../108-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 511s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 511s Selecting previously unselected package libtcl8.6:arm64. 511s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 511s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 511s Selecting previously unselected package libteckit0:arm64. 511s Preparing to unpack .../110-libteckit0_2.5.12+ds1-1_arm64.deb ... 511s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 511s Selecting previously unselected package libtexlua53-5:arm64. 511s Preparing to unpack .../111-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 511s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 511s Selecting previously unselected package libjbig0:arm64. 511s Preparing to unpack .../112-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 511s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 511s Selecting previously unselected package libwebp7:arm64. 511s Preparing to unpack .../113-libwebp7_1.5.0-0.1_arm64.deb ... 511s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 511s Selecting previously unselected package libtiff6:arm64. 511s Preparing to unpack .../114-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 511s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 511s Selecting previously unselected package libxft2:arm64. 511s Preparing to unpack .../115-libxft2_2.3.6-1build1_arm64.deb ... 511s Unpacking libxft2:arm64 (2.3.6-1build1) ... 511s Selecting previously unselected package libxss1:arm64. 511s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build3_arm64.deb ... 511s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 511s Selecting previously unselected package libtk8.6:arm64. 511s Preparing to unpack .../117-libtk8.6_8.6.16-1_arm64.deb ... 511s Unpacking libtk8.6:arm64 (8.6.16-1) ... 511s Selecting previously unselected package libxt6t64:arm64. 511s Preparing to unpack .../118-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 511s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 511s Selecting previously unselected package libxmu6:arm64. 511s Preparing to unpack .../119-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 511s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 511s Selecting previously unselected package libxpm4:arm64. 511s Preparing to unpack .../120-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 511s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 511s Selecting previously unselected package libxaw7:arm64. 511s Preparing to unpack .../121-libxaw7_2%3a1.0.16-1_arm64.deb ... 511s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 511s Selecting previously unselected package libxi6:arm64. 511s Preparing to unpack .../122-libxi6_2%3a1.8.2-1_arm64.deb ... 511s Unpacking libxi6:arm64 (2:1.8.2-1) ... 511s Selecting previously unselected package libzzip-0-13t64:arm64. 511s Preparing to unpack .../123-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 511s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 511s Selecting previously unselected package zip. 511s Preparing to unpack .../124-zip_3.0-14ubuntu2_arm64.deb ... 511s Unpacking zip (3.0-14ubuntu2) ... 512s Selecting previously unselected package unzip. 512s Preparing to unpack .../125-unzip_6.0-28ubuntu6_arm64.deb ... 512s Unpacking unzip (6.0-28ubuntu6) ... 512s Selecting previously unselected package xdg-utils. 512s Preparing to unpack .../126-xdg-utils_1.2.1-2ubuntu1_all.deb ... 512s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 512s Selecting previously unselected package r-base-core. 512s Preparing to unpack .../127-r-base-core_4.4.3-1_arm64.deb ... 512s Unpacking r-base-core (4.4.3-1) ... 512s Selecting previously unselected package r-cran-littler. 512s Preparing to unpack .../128-r-cran-littler_0.3.20-2_arm64.deb ... 512s Unpacking r-cran-littler (0.3.20-2) ... 512s Selecting previously unselected package littler. 512s Preparing to unpack .../129-littler_0.3.20-2_all.deb ... 512s Unpacking littler (0.3.20-2) ... 512s Selecting previously unselected package node-bootstrap-sass. 512s Preparing to unpack .../130-node-bootstrap-sass_3.4.3-2_all.deb ... 512s Unpacking node-bootstrap-sass (3.4.3-2) ... 512s Selecting previously unselected package node-html5shiv. 512s Preparing to unpack .../131-node-html5shiv_3.7.3+dfsg-5_all.deb ... 512s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 512s Selecting previously unselected package node-normalize.css. 512s Preparing to unpack .../132-node-normalize.css_8.0.1-5_all.deb ... 512s Unpacking node-normalize.css (8.0.1-5) ... 512s Selecting previously unselected package pandoc-data. 512s Preparing to unpack .../133-pandoc-data_3.1.11.1-3build1_all.deb ... 512s Unpacking pandoc-data (3.1.11.1-3build1) ... 512s Selecting previously unselected package pandoc. 512s Preparing to unpack .../134-pandoc_3.1.11.1+ds-2_arm64.deb ... 512s Unpacking pandoc (3.1.11.1+ds-2) ... 513s Selecting previously unselected package liblzma-dev:arm64. 513s Preparing to unpack .../135-liblzma-dev_5.6.4-1_arm64.deb ... 513s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 513s Selecting previously unselected package pkgconf-bin. 513s Preparing to unpack .../136-pkgconf-bin_1.8.1-4_arm64.deb ... 513s Unpacking pkgconf-bin (1.8.1-4) ... 513s Selecting previously unselected package pkgconf:arm64. 514s Preparing to unpack .../137-pkgconf_1.8.1-4_arm64.deb ... 514s Unpacking pkgconf:arm64 (1.8.1-4) ... 514s Selecting previously unselected package libtirpc-dev:arm64. 514s Preparing to unpack .../138-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 514s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 514s Selecting previously unselected package r-base-dev. 514s Preparing to unpack .../139-r-base-dev_4.4.3-1_all.deb ... 514s Unpacking r-base-dev (4.4.3-1) ... 514s Selecting previously unselected package pkg-r-autopkgtest. 514s Preparing to unpack .../140-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 514s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 514s Selecting previously unselected package r-bioc-biocgenerics. 514s Preparing to unpack .../141-r-bioc-biocgenerics_0.52.0-2_all.deb ... 514s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 514s Selecting previously unselected package r-bioc-biobase. 514s Preparing to unpack .../142-r-bioc-biobase_2.66.0-2_arm64.deb ... 514s Unpacking r-bioc-biobase (2.66.0-2) ... 514s Selecting previously unselected package r-bioc-all. 514s Preparing to unpack .../143-r-bioc-all_1.48.0-2_all.deb ... 514s Unpacking r-bioc-all (1.48.0-2) ... 514s Selecting previously unselected package r-cran-base64enc. 514s Preparing to unpack .../144-r-cran-base64enc_0.1-3-3_arm64.deb ... 514s Unpacking r-cran-base64enc (0.1-3-3) ... 514s Selecting previously unselected package r-cran-digest. 514s Preparing to unpack .../145-r-cran-digest_0.6.37-1_arm64.deb ... 514s Unpacking r-cran-digest (0.6.37-1) ... 514s Selecting previously unselected package r-cran-fastmap. 514s Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_arm64.deb ... 514s Unpacking r-cran-fastmap (1.2.0-1) ... 514s Selecting previously unselected package r-cran-rlang. 514s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_arm64.deb ... 514s Unpacking r-cran-rlang (1.1.5-1) ... 514s Selecting previously unselected package r-cran-htmltools. 514s Preparing to unpack .../148-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 514s Unpacking r-cran-htmltools (0.5.8.1-1) ... 514s Selecting previously unselected package r-cran-evaluate. 514s Preparing to unpack .../149-r-cran-evaluate_1.0.3-1_all.deb ... 514s Unpacking r-cran-evaluate (1.0.3-1) ... 514s Selecting previously unselected package r-cran-xfun. 514s Preparing to unpack .../150-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 514s Unpacking r-cran-xfun (0.51+dfsg-1) ... 514s Selecting previously unselected package r-cran-highr. 514s Preparing to unpack .../151-r-cran-highr_0.11+dfsg-1_all.deb ... 514s Unpacking r-cran-highr (0.11+dfsg-1) ... 514s Selecting previously unselected package r-cran-yaml. 514s Preparing to unpack .../152-r-cran-yaml_2.3.10-1_arm64.deb ... 514s Unpacking r-cran-yaml (2.3.10-1) ... 514s Selecting previously unselected package libjs-mathjax. 514s Preparing to unpack .../153-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 514s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 515s Selecting previously unselected package r-cran-knitr. 515s Preparing to unpack .../154-r-cran-knitr_1.49+dfsg-1_all.deb ... 515s Unpacking r-cran-knitr (1.49+dfsg-1) ... 515s Selecting previously unselected package r-cran-cachem. 515s Preparing to unpack .../155-r-cran-cachem_1.1.0-1_arm64.deb ... 515s Unpacking r-cran-cachem (1.1.0-1) ... 515s Selecting previously unselected package r-cran-jquerylib. 515s Preparing to unpack .../156-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 515s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 515s Selecting previously unselected package r-cran-jsonlite. 515s Preparing to unpack .../157-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 515s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 515s Selecting previously unselected package r-cran-cli. 515s Preparing to unpack .../158-r-cran-cli_3.6.4-1_arm64.deb ... 515s Unpacking r-cran-cli (3.6.4-1) ... 515s Selecting previously unselected package r-cran-glue. 515s Preparing to unpack .../159-r-cran-glue_1.8.0-1_arm64.deb ... 515s Unpacking r-cran-glue (1.8.0-1) ... 515s Selecting previously unselected package r-cran-lifecycle. 515s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 515s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 515s Selecting previously unselected package r-cran-memoise. 515s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 515s Unpacking r-cran-memoise (2.0.1-1) ... 515s Selecting previously unselected package r-cran-mime. 515s Preparing to unpack .../162-r-cran-mime_0.12-2_arm64.deb ... 515s Unpacking r-cran-mime (0.12-2) ... 515s Selecting previously unselected package r-cran-fs. 515s Preparing to unpack .../163-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 515s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 515s Selecting previously unselected package r-cran-r6. 515s Preparing to unpack .../164-r-cran-r6_2.6.1-1_all.deb ... 515s Unpacking r-cran-r6 (2.6.1-1) ... 515s Selecting previously unselected package r-cran-rappdirs. 516s Preparing to unpack .../165-r-cran-rappdirs_0.3.3-1_arm64.deb ... 516s Unpacking r-cran-rappdirs (0.3.3-1) ... 516s Selecting previously unselected package r-cran-sass. 516s Preparing to unpack .../166-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 516s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 516s Selecting previously unselected package r-cran-bslib. 516s Preparing to unpack .../167-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 516s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 516s Selecting previously unselected package r-cran-fontawesome. 516s Preparing to unpack .../168-r-cran-fontawesome_0.5.3-1_all.deb ... 516s Unpacking r-cran-fontawesome (0.5.3-1) ... 516s Selecting previously unselected package r-cran-tinytex. 516s Preparing to unpack .../169-r-cran-tinytex_0.56-1_all.deb ... 516s Unpacking r-cran-tinytex (0.56-1) ... 516s Selecting previously unselected package libjs-modernizr. 516s Preparing to unpack .../170-libjs-modernizr_3.13.0-0.1_all.deb ... 516s Unpacking libjs-modernizr (3.13.0-0.1) ... 516s Selecting previously unselected package r-cran-pkgkitten. 516s Preparing to unpack .../171-r-cran-pkgkitten_0.2.4-1_all.deb ... 516s Unpacking r-cran-pkgkitten (0.2.4-1) ... 516s Selecting previously unselected package r-cran-rcpp. 516s Preparing to unpack .../172-r-cran-rcpp_1.0.14-1_arm64.deb ... 516s Unpacking r-cran-rcpp (1.0.14-1) ... 516s Selecting previously unselected package r-cran-later. 516s Preparing to unpack .../173-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 516s Unpacking r-cran-later (1.4.1+dfsg-1) ... 516s Selecting previously unselected package r-cran-magrittr. 516s Preparing to unpack .../174-r-cran-magrittr_2.0.3-1_arm64.deb ... 516s Unpacking r-cran-magrittr (2.0.3-1) ... 516s Selecting previously unselected package r-cran-promises. 516s Preparing to unpack .../175-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 516s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 516s Selecting previously unselected package r-cran-httpuv. 516s Preparing to unpack .../176-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 516s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 516s Selecting previously unselected package r-cran-xtable. 516s Preparing to unpack .../177-r-cran-xtable_1%3a1.8-4-2_all.deb ... 516s Unpacking r-cran-xtable (1:1.8-4-2) ... 516s Selecting previously unselected package r-cran-sourcetools. 516s Preparing to unpack .../178-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 516s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 516s Selecting previously unselected package r-cran-crayon. 516s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 516s Unpacking r-cran-crayon (1.5.3-1) ... 516s Selecting previously unselected package r-cran-withr. 516s Preparing to unpack .../180-r-cran-withr_3.0.2+dfsg-1_all.deb ... 516s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 516s Selecting previously unselected package r-cran-commonmark. 517s Preparing to unpack .../181-r-cran-commonmark_1.9.2-2_arm64.deb ... 517s Unpacking r-cran-commonmark (1.9.2-2) ... 517s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 517s Preparing to unpack .../182-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 517s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 517s Selecting previously unselected package r-cran-shiny. 517s Preparing to unpack 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previously unselected package texlive-binaries. 517s Preparing to unpack .../189-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 517s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 517s Selecting previously unselected package texlive-base. 517s Preparing to unpack .../190-texlive-base_2024.20250114-1_all.deb ... 517s Unpacking texlive-base (2024.20250114-1) ... 518s Selecting previously unselected package texlive-latex-base. 518s Preparing to unpack .../191-texlive-latex-base_2024.20250114-1_all.deb ... 518s Unpacking texlive-latex-base (2024.20250114-1) ... 519s Selecting previously unselected package texlive-bibtex-extra. 519s Preparing to unpack .../192-texlive-bibtex-extra_2024.20250114-1_all.deb ... 519s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 521s Selecting previously unselected package r-bioc-biocversion. 521s Preparing to unpack .../193-r-bioc-biocversion_3.20.0-2_all.deb ... 521s Unpacking r-bioc-biocversion (3.20.0-2) ... 521s 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Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 522s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 522s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 522s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 522s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 522s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 522s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 522s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 522s Setting up libxi6:arm64 (2:1.8.2-1) ... 522s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 522s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 522s Setting up libjs-popper.js (1.16.1+ds-6) ... 522s Setting up libxcb-render0:arm64 (1.17.0-2) ... 522s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 522s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 522s Setting up libjs-lunr (2.3.9~dfsg-2) ... 522s Setting up unzip (6.0-28ubuntu6) ... 522s Setting up liblatex-tounicode-perl (0.55-1) ... 522s Setting up x11-common (1:7.7+23ubuntu3) ... 522s 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/var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 526s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 526s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 527s Setting up r-cran-magrittr (2.0.3-1) ... 527s Setting up r-cran-rappdirs (0.3.3-1) ... 527s Setting up r-cran-littler (0.3.20-2) ... 527s Setting up r-cran-fs (1.6.5+dfsg-1) ... 527s Setting up r-cran-rcpp (1.0.14-1) ... 527s Setting up r-bioc-biocgenerics (0.52.0-2) ... 527s Setting up r-cran-rlang (1.1.5-1) ... 527s Setting up littler (0.3.20-2) ... 527s Setting up r-cran-xfun (0.51+dfsg-1) ... 527s Setting up r-cran-withr (3.0.2+dfsg-1) ... 527s Setting up r-cran-mime (0.12-2) ... 527s Setting up r-cran-base64enc (0.1-3-3) ... 527s Setting up r-cran-digest (0.6.37-1) ... 527s Setting up r-cran-yaml (2.3.10-1) ... 527s Setting up r-cran-evaluate (1.0.3-1) ... 527s Setting up r-cran-highr (0.11+dfsg-1) ... 527s Setting up r-cran-glue (1.8.0-1) ... 527s Setting up r-cran-xtable (1:1.8-4-2) ... 527s Setting up r-cran-cli (3.6.4-1) ... 527s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 527s Setting up r-bioc-biocversion (3.20.0-2) ... 527s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 527s Setting up gcc (4:14.2.0-1ubuntu1) ... 527s Setting up r-cran-fastmap (1.2.0-1) ... 527s Setting up r-bioc-biobase (2.66.0-2) ... 527s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 527s Setting up texlive-latex-base (2024.20250114-1) ... 527s Setting up r-cran-runit (0.4.33-1) ... 527s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 527s Setting up r-cran-later (1.4.1+dfsg-1) ... 527s Setting up r-cran-htmltools (0.5.8.1-1) ... 527s Setting up r-cran-tinytex (0.56-1) ... 527s Setting up r-cran-knitr (1.49+dfsg-1) ... 527s Setting up g++ (4:14.2.0-1ubuntu1) ... 527s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 527s Setting up r-cran-cachem (1.1.0-1) ... 527s Setting up r-cran-sass (0.4.9+dfsg-1) ... 527s Setting up build-essential (12.10ubuntu1) ... 527s Setting up r-bioc-all (1.48.0-2) ... 527s Setting up r-bioc-golubesets (1.48.0-2) ... 527s Setting up r-cran-fontawesome (0.5.3-1) ... 527s Setting up gfortran (4:14.2.0-1ubuntu1) ... 527s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 527s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 527s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 527s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 527s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 527s Setting up texlive-bibtex-extra (2024.20250114-1) ... 527s Setting up r-cran-memoise (2.0.1-1) ... 527s Setting up r-cran-promises (1.3.2+dfsg-1) ... 527s Setting up r-base-dev (4.4.3-1) ... 527s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 527s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 527s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 527s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 527s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 527s Setting up r-cran-bookdown (0.42+dfsg-1) ... 527s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 527s Processing triggers for libc-bin (2.41-1ubuntu2) ... 527s Processing triggers for man-db (2.13.0-1) ... 528s Processing triggers for install-info (7.1.1-1) ... 528s Processing triggers for tex-common (6.19) ... 528s Running updmap-sys. This may take some time... done. 529s Running mktexlsr /var/lib/texmf ... done. 529s Building format(s) --all. 566s This may take some time... done. 568s autopkgtest [10:40:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 568s autopkgtest [10:40:45]: test pkg-r-autopkgtest: [----------------------- 568s Test: Try to load the R library Biobase 568s 568s R version 4.4.3 (2025-02-28) -- "Trophy Case" 568s Copyright (C) 2025 The R Foundation for Statistical Computing 568s Platform: aarch64-unknown-linux-gnu 568s 568s R is free software and comes with ABSOLUTELY NO WARRANTY. 568s You are welcome to redistribute it under certain conditions. 568s Type 'license()' or 'licence()' for distribution details. 568s 568s R is a collaborative project with many contributors. 568s Type 'contributors()' for more information and 568s 'citation()' on how to cite R or R packages in publications. 568s 568s Type 'demo()' for some demos, 'help()' for on-line help, or 568s 'help.start()' for an HTML browser interface to help. 568s Type 'q()' to quit R. 568s 568s > library('Biobase') 568s Loading required package: BiocGenerics 569s 569s Attaching package: ‘BiocGenerics’ 569s 569s The following objects are masked from ‘package:stats’: 569s 569s IQR, mad, sd, var, xtabs 569s 569s The following objects are masked from ‘package:base’: 569s 569s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 569s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 569s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 569s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 569s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 569s table, tapply, union, unique, unsplit, which.max, which.min 569s 569s Welcome to Bioconductor 569s 569s Vignettes contain introductory material; view with 569s 'browseVignettes()'. To cite Bioconductor, see 569s 'citation("Biobase")', and for packages 'citation("pkgname")'. 569s 569s > 569s > 569s Other tests are currently unsupported! 569s They will be progressively added. 569s autopkgtest [10:40:46]: test pkg-r-autopkgtest: -----------------------] 570s autopkgtest [10:40:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 570s pkg-r-autopkgtest PASS 570s autopkgtest [10:40:47]: @@@@@@@@@@@@@@@@@@@@ summary 570s pkg-r-autopkgtest PASS 589s nova [W] Using flock in prodstack6-arm64 589s flock: timeout while waiting to get lock 589s Creating nova instance adt-plucky-arm64-r-bioc-biobase-20250315-103116-juju-7f2275-prod-proposed-migration-environment-15-01c32814-707a-4c47-9893-ee4972ef5b32 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 589s nova [W] Timed out waiting for 12e4e616-273e-47ac-bf7f-2698337bd4ea to get deleted.