0s autopkgtest [15:03:33]: starting date and time: 2025-03-15 15:03:33+0000
  0s autopkgtest [15:03:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:03:33]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5ugybqj5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-affy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-38.secgroup --name adt-plucky-arm64-r-bioc-affy-20250315-150333-juju-7f2275-prod-proposed-migration-environment-15-0ecce4e6-b919-408d-b1e6-b6c235e70cc2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
170s autopkgtest [15:06:23]: testbed dpkg architecture: arm64
171s autopkgtest [15:06:24]: testbed apt version: 2.9.33
171s autopkgtest [15:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
171s autopkgtest [15:06:24]: testbed release detected to be: None
172s autopkgtest [15:06:25]: updating testbed package index (apt update)
172s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
173s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
173s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
173s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
173s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
173s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
173s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
174s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
174s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
174s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
174s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
174s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
174s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
174s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
174s Fetched 1094 kB in 2s (615 kB/s)
175s Reading package lists...
176s + lsb_release --codename --short
176s + RELEASE=plucky
176s + cat
176s + [ plucky != trusty ]
176s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
177s Calculating upgrade...
177s Calculating upgrade...
178s The following packages will be upgraded:
178s   python3-jinja2 strace
178s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
178s Need to get 608 kB of archives.
178s After this operation, 11.3 kB of additional disk space will be used.
178s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
179s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
179s Fetched 608 kB in 1s (525 kB/s)
180s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
180s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
180s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
180s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
180s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
180s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
180s Setting up strace (6.13+ds-1ubuntu1) ...
180s Processing triggers for man-db (2.13.0-1) ...
181s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
181s + /usr/lib/apt/apt-helper analyze-pattern ?true
181s + uname -r
181s + sed s/\./\\./g
181s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
181s + apt list ?obsolete
181s + tail -n+2
181s + cut -d/ -f1
181s + grep -v ^linux-.*6\.14\.0-10-generic.*
182s + obsolete_pkgs=linux-headers-6.11.0-8-generic
182s linux-headers-6.11.0-8
182s linux-image-6.11.0-8-generic
182s linux-modules-6.11.0-8-generic
182s linux-tools-6.11.0-8-generic
182s linux-tools-6.11.0-8
182s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
182s Reading package lists...
182s Building dependency tree...
182s Reading state information...
182s Solving dependencies...
183s The following packages will be REMOVED:
183s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
183s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
183s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
183s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
183s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
183s After this operation, 267 MB disk space will be freed.
183s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
183s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
183s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
183s Removing libpython3.12t64:arm64 (3.12.9-1) ...
183s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
183s Removing libnsl2:arm64 (1.3.0-3build3) ...
183s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
184s Removing libunwind8:arm64 (1.6.2-3.1) ...
184s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
184s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
186s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
186s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
186s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
186s /etc/kernel/postrm.d/initramfs-tools:
186s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
186s /etc/kernel/postrm.d/zz-flash-kernel:
186s flash-kernel: Kernel 6.11.0-8-generic has been removed.
186s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
187s /etc/kernel/postrm.d/zz-update-grub:
187s Sourcing file `/etc/default/grub'
187s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
187s Generating grub configuration file ...
187s Found linux image: /boot/vmlinuz-6.14.0-10-generic
187s Found initrd image: /boot/initrd.img-6.14.0-10-generic
187s Warning: os-prober will not be executed to detect other bootable partitions.
187s Systems on them will not be added to the GRUB boot configuration.
187s Check GRUB_DISABLE_OS_PROBER documentation entry.
187s Adding boot menu entry for UEFI Firmware Settings ...
187s done
187s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
188s Processing triggers for libc-bin (2.41-1ubuntu1) ...
188s (Reading database ... 
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(Reading database ... 81650 files and directories currently installed.)
188s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
188s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
188s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
188s + grep -q trusty /etc/lsb-release
188s + [ ! -d /usr/share/doc/unattended-upgrades ]
188s + [ ! -d /usr/share/doc/lxd ]
188s + [ ! -d /usr/share/doc/lxd-client ]
188s + [ ! -d /usr/share/doc/snapd ]
188s + type iptables
188s + cat
188s + chmod 755 /etc/rc.local
188s + . /etc/rc.local
188s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
188s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
188s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
188s + uname -m
188s + [ aarch64 = ppc64le ]
188s + [ -d /run/systemd/system ]
188s + systemd-detect-virt --quiet --vm
188s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
188s + cat
188s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
188s + echo COMPRESS=lz4
188s autopkgtest [15:06:41]: upgrading testbed (apt dist-upgrade and autopurge)
188s Reading package lists...
189s Building dependency tree...
189s Reading state information...
189s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
190s Starting 2 pkgProblemResolver with broken count: 0
190s Done
190s Entering ResolveByKeep
191s 
191s Calculating upgrade...
191s The following packages will be upgraded:
191s   libc-bin libc-dev-bin libc6 libc6-dev locales
192s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
192s Need to get 9530 kB of archives.
192s After this operation, 0 B of additional disk space will be used.
192s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
194s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
194s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
197s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
198s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
203s Preconfiguring packages ...
204s Fetched 9530 kB in 12s (813 kB/s)
204s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
204s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
204s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
204s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
204s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
204s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
204s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
204s Setting up libc6:arm64 (2.41-1ubuntu2) ...
205s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
205s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
205s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
205s Setting up libc-bin (2.41-1ubuntu2) ...
205s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
205s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
205s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
205s Setting up locales (2.41-1ubuntu2) ...
206s Generating locales (this might take a while)...
208s   en_US.UTF-8... done
208s Generation complete.
208s Setting up libc-dev-bin (2.41-1ubuntu2) ...
208s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
208s Processing triggers for man-db (2.13.0-1) ...
209s Processing triggers for systemd (257.3-1ubuntu3) ...
210s Reading package lists...
210s Building dependency tree...
210s Reading state information...
211s Starting pkgProblemResolver with broken count: 0
211s Starting 2 pkgProblemResolver with broken count: 0
211s Done
211s Solving dependencies...
212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
212s autopkgtest [15:07:05]: rebooting testbed after setup commands that affected boot
236s autopkgtest [15:07:29]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
239s autopkgtest [15:07:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affy
243s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (dsc) [2162 B]
243s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (tar) [1771 kB]
243s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (diff) [5324 B]
243s gpgv: Signature made Sun Jan 12 10:14:54 2025 UTC
243s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
243s gpgv:                issuer "crusoe@debian.org"
243s gpgv: Can't check signature: No public key
243s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affy_1.84.0-2.dsc: no acceptable signature found
243s autopkgtest [15:07:36]: testing package r-bioc-affy version 1.84.0-2
244s autopkgtest [15:07:37]: build not needed
255s autopkgtest [15:07:48]: test pkg-r-autopkgtest: preparing testbed
256s Reading package lists...
256s Building dependency tree...
256s Reading state information...
256s Starting pkgProblemResolver with broken count: 0
256s Starting 2 pkgProblemResolver with broken count: 0
256s Done
257s The following NEW packages will be installed:
257s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
257s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
257s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
257s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
257s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
257s   libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1
257s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
257s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
257s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
257s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
257s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
257s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
257s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
257s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
257s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
257s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
257s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affy
257s   r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-preprocesscore
257s   r-bioc-zlibbioc r-cran-biocmanager unzip x11-common xdg-utils zip zlib1g-dev
257s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded.
257s Need to get 136 MB of archives.
257s After this operation, 422 MB of additional disk space will be used.
257s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
258s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
258s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
269s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
269s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
269s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
269s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
269s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
270s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
270s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
273s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
274s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
276s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
278s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
280s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
282s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
306s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
306s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
306s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
306s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
310s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
325s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
325s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
325s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
325s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
325s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
325s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
325s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
326s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
326s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
327s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
327s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
327s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
328s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
343s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
343s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
343s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
343s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
343s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
343s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
343s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
343s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
343s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
343s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
343s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
343s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
344s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
344s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
344s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
344s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
344s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
345s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
345s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
345s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
358s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
358s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
358s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
358s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
358s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
358s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
361s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
365s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
365s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
366s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
366s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
366s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
366s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
366s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
366s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
366s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
366s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
367s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
367s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
367s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
368s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
368s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
369s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
369s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
369s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
369s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
369s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
370s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
370s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
371s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
371s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
371s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
371s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
372s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
372s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
372s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
372s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
372s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
403s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
403s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
403s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
403s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
404s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
404s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
404s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
404s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
407s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
407s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affyio arm64 1.76.0-2 [89.1 kB]
407s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
407s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-preprocesscore arm64 1.68.0+ds-2 [152 kB]
407s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affy arm64 1.84.0-2 [2020 kB]
410s Preconfiguring packages ...
410s Fetched 136 MB in 2min 32s (896 kB/s)
410s Selecting previously unselected package libisl23:arm64.
410s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
410s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
410s Unpacking libisl23:arm64 (0.27-1) ...
410s Selecting previously unselected package libmpc3:arm64.
410s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
410s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
410s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
410s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
410s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
411s Selecting previously unselected package cpp-14.
411s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
411s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
411s Selecting previously unselected package cpp-aarch64-linux-gnu.
411s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
411s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
411s Selecting previously unselected package cpp.
411s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
411s Unpacking cpp (4:14.2.0-1ubuntu1) ...
411s Selecting previously unselected package libcc1-0:arm64.
411s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libgomp1:arm64.
411s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libitm1:arm64.
411s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libasan8:arm64.
411s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package liblsan0:arm64.
411s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libtsan2:arm64.
411s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libubsan1:arm64.
411s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libhwasan0:arm64.
411s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
411s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
411s Selecting previously unselected package libgcc-14-dev:arm64.
411s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
411s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
411s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
411s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
411s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
412s Selecting previously unselected package gcc-14.
412s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
412s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
412s Selecting previously unselected package gcc-aarch64-linux-gnu.
412s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
412s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
412s Selecting previously unselected package gcc.
412s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
412s Unpacking gcc (4:14.2.0-1ubuntu1) ...
412s Selecting previously unselected package libstdc++-14-dev:arm64.
412s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
412s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
412s Selecting previously unselected package g++-14-aarch64-linux-gnu.
412s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
412s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
412s Selecting previously unselected package g++-14.
412s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
412s Unpacking g++-14 (14.2.0-17ubuntu3) ...
412s Selecting previously unselected package g++-aarch64-linux-gnu.
412s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
412s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
412s Selecting previously unselected package g++.
412s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
412s Unpacking g++ (4:14.2.0-1ubuntu1) ...
412s Selecting previously unselected package build-essential.
412s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ...
412s Unpacking build-essential (12.10ubuntu1) ...
412s Selecting previously unselected package dctrl-tools.
413s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
413s Unpacking dctrl-tools (2.24-3build3) ...
413s Selecting previously unselected package fonts-dejavu-mono.
413s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
413s Unpacking fonts-dejavu-mono (2.37-8) ...
413s Selecting previously unselected package fonts-dejavu-core.
413s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
413s Unpacking fonts-dejavu-core (2.37-8) ...
413s Selecting previously unselected package fontconfig-config.
413s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
413s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
413s Selecting previously unselected package libfontconfig1:arm64.
413s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
413s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
413s Selecting previously unselected package fontconfig.
413s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
413s Unpacking fontconfig (2.15.0-2ubuntu1) ...
413s Selecting previously unselected package libgfortran5:arm64.
413s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
413s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
413s Selecting previously unselected package libgfortran-14-dev:arm64.
413s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
413s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
413s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
413s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
413s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
414s Selecting previously unselected package gfortran-14.
414s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
414s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
414s Selecting previously unselected package gfortran-aarch64-linux-gnu.
414s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
414s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
414s Selecting previously unselected package gfortran.
414s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
414s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
414s Selecting previously unselected package icu-devtools.
414s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ...
414s Unpacking icu-devtools (76.1-1ubuntu2) ...
414s Selecting previously unselected package libblas3:arm64.
414s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ...
414s Unpacking libblas3:arm64 (3.12.1-2) ...
414s Selecting previously unselected package libblas-dev:arm64.
414s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ...
414s Unpacking libblas-dev:arm64 (3.12.1-2) ...
414s Selecting previously unselected package libbz2-dev:arm64.
414s Preparing to unpack .../040-libbz2-dev_1.0.8-6_arm64.deb ...
414s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
414s Selecting previously unselected package libpixman-1-0:arm64.
414s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_arm64.deb ...
414s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
414s Selecting previously unselected package libxcb-render0:arm64.
414s Preparing to unpack .../042-libxcb-render0_1.17.0-2_arm64.deb ...
414s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
414s Selecting previously unselected package libxcb-shm0:arm64.
414s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_arm64.deb ...
414s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
414s Selecting previously unselected package libxrender1:arm64.
414s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
414s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
414s Selecting previously unselected package libcairo2:arm64.
414s Preparing to unpack .../045-libcairo2_1.18.2-2_arm64.deb ...
414s Unpacking libcairo2:arm64 (1.18.2-2) ...
414s Selecting previously unselected package libdatrie1:arm64.
414s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_arm64.deb ...
414s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
414s Selecting previously unselected package libdeflate0:arm64.
414s Preparing to unpack .../047-libdeflate0_1.23-1_arm64.deb ...
414s Unpacking libdeflate0:arm64 (1.23-1) ...
414s Selecting previously unselected package libdeflate-dev:arm64.
414s Preparing to unpack .../048-libdeflate-dev_1.23-1_arm64.deb ...
414s Unpacking libdeflate-dev:arm64 (1.23-1) ...
414s Selecting previously unselected package libgraphite2-3:arm64.
414s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
414s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
414s Selecting previously unselected package libharfbuzz0b:arm64.
414s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_arm64.deb ...
414s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
414s Selecting previously unselected package x11-common.
414s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ...
414s Unpacking x11-common (1:7.7+23ubuntu3) ...
414s Selecting previously unselected package libice6:arm64.
414s Preparing to unpack .../052-libice6_2%3a1.1.1-1_arm64.deb ...
414s Unpacking libice6:arm64 (2:1.1.1-1) ...
414s Selecting previously unselected package libicu-dev:arm64.
414s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_arm64.deb ...
414s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
415s Selecting previously unselected package libjpeg-turbo8:arm64.
415s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
415s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
415s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
415s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
415s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
415s Selecting previously unselected package libjpeg8:arm64.
415s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_arm64.deb ...
415s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
415s Selecting previously unselected package libjpeg8-dev:arm64.
415s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
415s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
415s Selecting previously unselected package libjpeg-dev:arm64.
415s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
415s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
415s Selecting previously unselected package liblapack3:arm64.
415s Preparing to unpack .../059-liblapack3_3.12.1-2_arm64.deb ...
415s Unpacking liblapack3:arm64 (3.12.1-2) ...
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415s Selecting previously unselected package libncurses-dev:arm64.
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415s Selecting previously unselected package libthai-data.
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415s Selecting previously unselected package libthai0:arm64.
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415s Unpacking libthai0:arm64 (0.1.29-2build1) ...
415s Selecting previously unselected package libpango-1.0-0:arm64.
415s Preparing to unpack .../065-libpango-1.0-0_1.56.2-1_arm64.deb ...
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415s Selecting previously unselected package libpangoft2-1.0-0:arm64.
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415s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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415s Selecting previously unselected package libpaper2:arm64.
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415s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
416s Selecting previously unselected package libpaper-utils.
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417s Selecting previously unselected package r-bioc-biocgenerics.
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417s Selecting previously unselected package r-bioc-affyio.
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417s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ...
417s Selecting previously unselected package r-bioc-affy.
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417s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
417s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
417s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
417s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
417s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
417s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
417s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
417s Setting up libxcb-render0:arm64 (1.17.0-2) ...
417s Setting up unzip (6.0-28ubuntu6) ...
417s Setting up x11-common (1:7.7+23ubuntu3) ...
418s Setting up libdeflate0:arm64 (1.23-1) ...
418s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
418s Setting up libreadline-dev:arm64 (8.2-6) ...
418s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
418s Setting up libpcre2-16-0:arm64 (10.45-1) ...
418s Setting up zip (3.0-14ubuntu2) ...
418s Setting up libpcre2-32-0:arm64 (10.45-1) ...
418s Setting up libblas3:arm64 (3.12.1-2) ...
418s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
418s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
418s Setting up libpkgconf3:arm64 (1.8.1-4) ...
418s Setting up fonts-dejavu-mono (2.37-8) ...
418s Setting up libmpc3:arm64 (1.3.1-1build2) ...
418s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
418s Setting up icu-devtools (76.1-1ubuntu2) ...
418s Setting up fonts-dejavu-core (2.37-8) ...
418s Setting up pkgconf-bin (1.8.1-4) ...
418s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
418s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libwebp7:arm64 (1.5.0-0.1) ...
418s Setting up liblzma-dev:arm64 (5.6.4-1) ...
418s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
418s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
418s Setting up libpcre2-posix3:arm64 (10.45-1) ...
418s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
418s Setting up libthai-data (0.1.29-2build1) ...
418s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
418s Setting up libpaper2:arm64 (2.2.5-0.3) ...
418s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libisl23:arm64 (0.27-1) ...
418s Setting up libdeflate-dev:arm64 (1.23-1) ...
418s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
418s Setting up xdg-utils (1.2.1-2ubuntu1) ...
418s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
418s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
418s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libblas-dev:arm64 (3.12.1-2) ...
418s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
418s Setting up dctrl-tools (2.24-3build3) ...
418s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
418s Setting up libbz2-dev:arm64 (1.0.8-6) ...
418s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
418s Setting up libice6:arm64 (2:1.1.1-1) ...
418s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
418s Setting up liblapack3:arm64 (3.12.1-2) ...
418s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
418s Setting up libpcre2-dev:arm64 (10.45-1) ...
418s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
418s Setting up libpng-dev:arm64 (1.6.47-1) ...
418s Setting up libpaper-utils (2.2.5-0.3) ...
418s Setting up pkgconf:arm64 (1.8.1-4) ...
418s Setting up libthai0:arm64 (0.1.29-2build1) ...
418s Setting up liblapack-dev:arm64 (3.12.1-2) ...
418s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
418s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
418s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
418s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
418s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
418s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
418s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
418s Setting up libsm6:arm64 (2:1.2.4-1) ...
418s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
418s Setting up fontconfig (2.15.0-2ubuntu1) ...
420s Regenerating fonts cache... done.
420s Setting up libxft2:arm64 (2.3.6-1build1) ...
420s Setting up libtk8.6:arm64 (8.6.16-1) ...
420s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
420s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
420s Setting up libcairo2:arm64 (1.18.2-2) ...
420s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
420s Setting up cpp-14 (14.2.0-17ubuntu3) ...
420s Setting up cpp (4:14.2.0-1ubuntu1) ...
420s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
420s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
420s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
420s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
420s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
420s Setting up gcc-14 (14.2.0-17ubuntu3) ...
420s Setting up r-base-core (4.4.3-1) ...
420s Creating config file /etc/R/Renviron with new version
421s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
421s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
421s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
421s Setting up g++-14 (14.2.0-17ubuntu3) ...
421s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
421s Setting up r-bioc-biocgenerics (0.52.0-2) ...
421s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
421s Setting up gcc (4:14.2.0-1ubuntu1) ...
421s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
421s Setting up r-bioc-biobase (2.66.0-2) ...
421s Setting up g++ (4:14.2.0-1ubuntu1) ...
421s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
421s Setting up build-essential (12.10ubuntu1) ...
421s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ...
421s Setting up r-bioc-affyio (1.76.0-2) ...
421s Setting up gfortran (4:14.2.0-1ubuntu1) ...
421s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
421s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
421s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
421s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
421s Setting up r-bioc-affy (1.84.0-2) ...
421s Setting up r-base-dev (4.4.3-1) ...
421s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
421s Processing triggers for libc-bin (2.41-1ubuntu2) ...
421s Processing triggers for man-db (2.13.0-1) ...
422s Processing triggers for install-info (7.1.1-1) ...
424s autopkgtest [15:10:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
424s autopkgtest [15:10:37]: test pkg-r-autopkgtest: [-----------------------
424s Test: Try to load the R library affy
424s 
424s R version 4.4.3 (2025-02-28) -- "Trophy Case"
424s Copyright (C) 2025 The R Foundation for Statistical Computing
424s Platform: aarch64-unknown-linux-gnu
424s 
424s R is free software and comes with ABSOLUTELY NO WARRANTY.
424s You are welcome to redistribute it under certain conditions.
424s Type 'license()' or 'licence()' for distribution details.
424s 
424s R is a collaborative project with many contributors.
424s Type 'contributors()' for more information and
424s 'citation()' on how to cite R or R packages in publications.
424s 
424s Type 'demo()' for some demos, 'help()' for on-line help, or
424s 'help.start()' for an HTML browser interface to help.
424s Type 'q()' to quit R.
424s 
424s > library('affy')
424s Loading required package: BiocGenerics
424s 
424s Attaching package: ‘BiocGenerics’
424s 
424s The following objects are masked from ‘package:stats’:
424s 
424s     IQR, mad, sd, var, xtabs
424s 
424s The following objects are masked from ‘package:base’:
424s 
424s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
424s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
424s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
424s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
424s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
424s     table, tapply, union, unique, unsplit, which.max, which.min
424s 
424s Loading required package: Biobase
425s Welcome to Bioconductor
425s 
425s     Vignettes contain introductory material; view with
425s     'browseVignettes()'. To cite Bioconductor, see
425s     'citation("Biobase")', and for packages 'citation("pkgname")'.
425s 
425s > 
425s > 
425s Other tests are currently unsupported!
425s They will be progressively added.
425s autopkgtest [15:10:38]: test pkg-r-autopkgtest: -----------------------]
426s pkg-r-autopkgtest    PASS
426s autopkgtest [15:10:39]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
426s autopkgtest [15:10:39]: @@@@@@@@@@@@@@@@@@@@ summary
426s pkg-r-autopkgtest    PASS
444s nova [W] Using flock in prodstack6-arm64
444s Creating nova instance adt-plucky-arm64-r-bioc-affy-20250315-150333-juju-7f2275-prod-proposed-migration-environment-15-0ecce4e6-b919-408d-b1e6-b6c235e70cc2 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
444s nova [W] Timed out waiting for ecf464bb-42f3-41c8-b44e-952b26a7d302 to get deleted.