0s autopkgtest [11:04:47]: starting date and time: 2024-11-13 11:04:47+0000 0s autopkgtest [11:04:47]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:04:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o33eow13/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-taxa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-40.secgroup --name adt-plucky-arm64-q2-taxa-20241113-110446-juju-7f2275-prod-proposed-migration-environment-2-ed7afe39-67ee-4b07-a95a-4c06598f6681 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 87s autopkgtest [11:06:14]: testbed dpkg architecture: arm64 87s autopkgtest [11:06:14]: testbed apt version: 2.9.8 87s autopkgtest [11:06:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 89s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 89s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 89s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 89s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 89s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 89s Fetched 1794 kB in 1s (2067 kB/s) 90s Reading package lists... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade... 94s The following NEW packages will be installed: 94s python3.13-gdbm 94s The following packages will be upgraded: 94s libpython3-stdlib python3 python3-gdbm python3-minimal 95s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 101 kB of archives. 95s After this operation, 141 kB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 95s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 95s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 95s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 95s Fetched 101 kB in 0s (278 kB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 96s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 96s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 96s Setting up python3-minimal (3.12.7-1) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 96s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 96s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 96s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 96s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 96s Selecting previously unselected package python3.13-gdbm. 96s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 96s Unpacking python3.13-gdbm (3.13.0-2) ... 96s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 96s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 96s Setting up python3.13-gdbm (3.13.0-2) ... 96s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 96s Setting up python3 (3.12.7-1) ... 97s Setting up python3-gdbm:arm64 (3.12.7-1) ... 97s Processing triggers for man-db (2.12.1-3) ... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 100s Reading package lists... 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Calculating upgrade... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [11:06:34]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 107s autopkgtest [11:06:34]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-taxa 109s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (dsc) [2380 B] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (tar) [234 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (diff) [7576 B] 109s gpgv: Signature made Thu Jul 11 06:38:28 2024 UTC 109s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 109s gpgv: Can't check signature: No public key 109s dpkg-source: warning: cannot verify inline signature for ./q2-taxa_2024.5.0+dfsg-1build1.dsc: no acceptable signature found 109s autopkgtest [11:06:36]: testing package q2-taxa version 2024.5.0+dfsg-1build1 110s autopkgtest [11:06:37]: build not needed 110s autopkgtest [11:06:37]: test run-unit-test: preparing testbed 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 114s The following additional packages will be installed: 114s fonts-glyphicons-halflings javascript-common libaec0 libblas3 libgfortran5 114s libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-bootstrap libjs-jquery 114s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 114s libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-popper.js 114s liblapack3 liblbfgsb0 liblzf1 libnorm1t64 libopenblas0 libopenblas0-pthread 114s libpgm-5.3-0t64 libpython3.13-minimal libpython3.13-stdlib libsodium23 114s libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-d3-color node-d3-interpolate 114s node-d3-scale-chromatic node-fortawesome-fontawesome-free node-natural-sort 114s node-normalize.css node-thenby python3-all python3-bibtexparser 114s python3-biom-format python3-click python3-colorama python3-coverage 114s python3-dateutil python3-decorator python3-dill python3-filelock 114s python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 114s python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians 114s python3-ijson python3-iniconfig python3-itsdangerous python3-lxml 114s python3-natsort python3-networkx python3-numpy python3-packaging 114s python3-pandas python3-pandas-lib python3-parsl python3-patsy 114s python3-platformdirs python3-pluggy python3-psutil python3-public python3-py 114s python3-pytest python3-pytest-cov python3-scipy python3-setproctitle 114s python3-six python3-skbio python3-sqlalchemy python3-statsmodels 114s python3-statsmodels-lib python3-tblib python3-tomlkit python3-tz 114s python3-tzlocal python3-werkzeug python3-zmq python3.13 python3.13-minimal 114s q2-taxa q2-types q2templates qiime 114s Suggested packages: 114s apache2 | lighttpd | httpd libjs-html5shiv python-biom-format-doc 114s python-coverage-doc python3-objgraph python3-dotenv python-flask-doc 114s python-flufl.lock-doc python-greenlet-dev python-greenlet-doc 114s python-h5py-doc python-lxml-doc python-natsort-doc python3-gdal 114s python3-matplotlib python3-pydot python3-pygraphviz gcc gfortran 114s python-numpy-doc python3-dev python-pandas-doc python-patsy-doc 114s python-public-doc subversion python-scipy-doc python-skbio-doc 114s python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 114s python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector 114s python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql 114s python3-cx-oracle python3-oracledb python-statsmodels-doc ipython3 114s python-werkzeug-doc python3-watchdog python3.13-venv python3.13-doc 114s binfmt-support 114s Recommended packages: 114s node-jquery python3-asgiref python3-simplejson python3-bs4 python3-cssselect 114s python3-html5lib python3-matplotlib python3-bottleneck python3-numexpr 114s python3-odf python3-openpyxl python3-tables r-cran-plotly g++ | c++-compiler 114s python3-pil python3-sqlalchemy-ext python3-joblib python3-cvxopt 114s python3-pyinotify q2cli q2-cutadapt q2-metadata q2-demux q2-quality-filter 114s q2-feature-classifier q2-feature-table 114s The following NEW packages will be installed: 114s autopkgtest-satdep fonts-glyphicons-halflings javascript-common libaec0 114s libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 114s libjs-bootstrap libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 114s libjs-jquery-metadata libjs-jquery-tablesorter 114s libjs-jquery-throttle-debounce libjs-popper.js liblapack3 liblbfgsb0 liblzf1 114s libnorm1t64 libopenblas0 libopenblas0-pthread libpgm-5.3-0t64 114s libpython3.13-minimal libpython3.13-stdlib libsodium23 libssw0 libsz2 114s libxslt1.1 libyajl2 libzmq5 node-d3-color node-d3-interpolate 114s node-d3-scale-chromatic node-fortawesome-fontawesome-free node-natural-sort 114s node-normalize.css node-thenby python3-all python3-bibtexparser 114s python3-biom-format python3-click python3-colorama python3-coverage 114s python3-dateutil python3-decorator python3-dill python3-filelock 114s python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 114s python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians 114s python3-ijson python3-iniconfig python3-itsdangerous python3-lxml 114s python3-natsort python3-networkx python3-numpy python3-packaging 114s python3-pandas python3-pandas-lib python3-parsl python3-patsy 114s python3-platformdirs python3-pluggy python3-psutil python3-public python3-py 114s python3-pytest python3-pytest-cov python3-scipy python3-setproctitle 114s python3-six python3-skbio python3-sqlalchemy python3-statsmodels 114s python3-statsmodels-lib python3-tblib python3-tomlkit python3-tz 114s python3-tzlocal python3-werkzeug python3-zmq python3.13 python3.13-minimal 114s q2-taxa q2-types q2templates qiime 114s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 114s Need to get 79.0 MB/79.0 MB of archives. 114s After this operation, 422 MB of additional disk space will be used. 114s Get:1 /tmp/autopkgtest.h3X4b4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 114s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 114s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 115s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 11+nmu1 [5936 B] 115s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 115s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 115s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 115s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 115s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 115s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 115s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 115s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 115s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 115s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 115s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 115s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 115s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas0-pthread arm64 0.3.28+ds-3 [5853 kB] 115s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 115s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 115s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 115s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1build1 [150 kB] 115s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas0 arm64 0.3.28+ds-3 [6240 B] 115s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1build1 [162 kB] 115s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 115s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libsodium23 arm64 1.0.18-1build3 [119 kB] 115s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 115s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 115s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzmq5 arm64 4.3.5-1build2 [247 kB] 115s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-d3-color all 1.4.1+~1.4.2-1 [19.9 kB] 115s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-d3-interpolate all 1.4.0+~1.4.2-1 [24.0 kB] 115s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-d3-scale-chromatic all 1.5.0+~1.5.1-1 [23.5 kB] 115s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 115s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-natural-sort all 1.0.0-5 [4306 B] 115s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 115s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-thenby all 1.3.4+git20200720.0fd165a+ds-5 [5098 B] 115s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 115s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 115s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 115s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 115s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 115s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 115s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 115s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 115s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 115s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 115s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 115s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 115s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 116s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 116s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 117s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 117s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-coverage arm64 7.4.4+dfsg1-0ubuntu2 [148 kB] 117s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dill all 0.3.9-1 [84.5 kB] 117s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-filelock all 3.16.1-1 [12.8 kB] 117s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 117s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-werkzeug all 3.0.4-1ubuntu1 [171 kB] 117s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 117s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-greenlet arm64 3.0.3-0ubuntu6 [153 kB] 117s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sqlalchemy all 2.0.32+ds1-1ubuntu1 [1206 kB] 117s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-flask-sqlalchemy all 3.1.1-2 [30.9 kB] 117s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB] 117s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-public all 4.1.0-2 [7130 B] 117s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-flufl.lock all 8.1.0-2 [12.5 kB] 117s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-globus-sdk all 3.46.0-1 [266 kB] 117s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB] 117s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 117s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 117s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 117s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 118s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 118s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-setproctitle arm64 1.3.3-1build2 [18.6 kB] 118s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tblib all 3.0.0-5 [12.9 kB] 118s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-py all 1.11.0-2 [72.7 kB] 118s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-zmq arm64 24.0.1-5build1 [280 kB] 118s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-parsl all 2024.11.04+ds-1 [277 kB] 118s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 0.5.6-1 [181 kB] 118s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 118s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 118s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 118s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 118s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 118s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1 [1627 kB] 118s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB] 119s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-3 [1391 kB] 119s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tomlkit all 0.13.2-1 [37.6 kB] 119s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tzlocal all 5.2-1.1 [20.5 kB] 119s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 qiime all 2024.5.0-1ubuntu2 [312 kB] 119s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2templates all 2024.5.0+ds-1 [12.0 kB] 119s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libyajl2 arm64 2.1.0-5build1 [19.7 kB] 119s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ijson arm64 3.3.0-1 [36.7 kB] 119s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2-types all 2024.5.0-1ubuntu2 [5755 kB] 119s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2-taxa all 2024.5.0+dfsg-1build1 [40.0 kB] 120s Fetched 79.0 MB in 6s (14.1 MB/s) 120s Selecting previously unselected package libpython3.13-minimal:arm64. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 120s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 120s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 120s Selecting previously unselected package python3.13-minimal. 120s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 120s Unpacking python3.13-minimal (3.13.0-2) ... 120s Selecting previously unselected package libjs-jquery. 120s Preparing to unpack .../02-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 120s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 120s Selecting previously unselected package libjs-jquery-hotkeys. 120s Preparing to unpack .../03-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 120s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 120s Selecting previously unselected package fonts-glyphicons-halflings. 120s Preparing to unpack .../04-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 120s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 120s Selecting previously unselected package javascript-common. 120s Preparing to unpack .../05-javascript-common_11+nmu1_all.deb ... 120s Unpacking javascript-common (11+nmu1) ... 120s Selecting previously unselected package libaec0:arm64. 120s Preparing to unpack .../06-libaec0_1.1.3-1_arm64.deb ... 120s Unpacking libaec0:arm64 (1.1.3-1) ... 120s Selecting previously unselected package libblas3:arm64. 120s Preparing to unpack .../07-libblas3_3.12.0-3build2_arm64.deb ... 120s Unpacking libblas3:arm64 (3.12.0-3build2) ... 120s Selecting previously unselected package libgfortran5:arm64. 120s Preparing to unpack .../08-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 120s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 120s Selecting previously unselected package libgomp1:arm64. 120s Preparing to unpack .../09-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 120s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 120s Selecting previously unselected package libsz2:arm64. 120s Preparing to unpack .../10-libsz2_1.1.3-1_arm64.deb ... 120s Unpacking libsz2:arm64 (1.1.3-1) ... 120s Selecting previously unselected package libhdf5-103-1t64:arm64. 120s Preparing to unpack .../11-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 120s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 120s Selecting previously unselected package libhdf5-hl-100t64:arm64. 120s Preparing to unpack .../12-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 120s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 121s Selecting previously unselected package libjs-bootstrap. 121s Preparing to unpack .../13-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 121s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 121s Selecting previously unselected package libjs-jquery-metadata. 121s Preparing to unpack .../14-libjs-jquery-metadata_12-4_all.deb ... 121s Unpacking libjs-jquery-metadata (12-4) ... 121s Selecting previously unselected package libjs-jquery-tablesorter. 121s Preparing to unpack .../15-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 121s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 121s Selecting previously unselected package libjs-jquery-throttle-debounce. 121s Preparing to unpack .../16-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 121s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 121s Selecting previously unselected package libjs-popper.js. 121s Preparing to unpack .../17-libjs-popper.js_1.16.1+ds-6_all.deb ... 121s Unpacking libjs-popper.js (1.16.1+ds-6) ... 121s Selecting previously unselected package libopenblas0-pthread:arm64. 121s Preparing to unpack .../18-libopenblas0-pthread_0.3.28+ds-3_arm64.deb ... 121s Unpacking libopenblas0-pthread:arm64 (0.3.28+ds-3) ... 121s Selecting previously unselected package liblapack3:arm64. 121s Preparing to unpack .../19-liblapack3_3.12.0-3build2_arm64.deb ... 121s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 121s Selecting previously unselected package liblbfgsb0:arm64. 121s Preparing to unpack .../20-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 121s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 121s Selecting previously unselected package liblzf1:arm64. 121s Preparing to unpack .../21-liblzf1_3.6-4_arm64.deb ... 121s Unpacking liblzf1:arm64 (3.6-4) ... 121s Selecting previously unselected package libnorm1t64:arm64. 121s Preparing to unpack .../22-libnorm1t64_1.5.9+dfsg-3.1build1_arm64.deb ... 121s Unpacking libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ... 121s Selecting previously unselected package libopenblas0:arm64. 121s Preparing to unpack .../23-libopenblas0_0.3.28+ds-3_arm64.deb ... 121s Unpacking libopenblas0:arm64 (0.3.28+ds-3) ... 121s Selecting previously unselected package libpgm-5.3-0t64:arm64. 121s Preparing to unpack .../24-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_arm64.deb ... 121s Unpacking libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ... 121s Selecting previously unselected package libpython3.13-stdlib:arm64. 121s Preparing to unpack .../25-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 121s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 121s Selecting previously unselected package libsodium23:arm64. 121s Preparing to unpack .../26-libsodium23_1.0.18-1build3_arm64.deb ... 121s Unpacking libsodium23:arm64 (1.0.18-1build3) ... 121s Selecting previously unselected package libssw0:arm64. 121s Preparing to unpack .../27-libssw0_1.1-15_arm64.deb ... 121s Unpacking libssw0:arm64 (1.1-15) ... 121s Selecting previously unselected package libxslt1.1:arm64. 121s Preparing to unpack .../28-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ... 121s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 121s Selecting previously unselected package libzmq5:arm64. 121s Preparing to unpack .../29-libzmq5_4.3.5-1build2_arm64.deb ... 121s Unpacking libzmq5:arm64 (4.3.5-1build2) ... 121s Selecting previously unselected package node-d3-color. 121s Preparing to unpack .../30-node-d3-color_1.4.1+~1.4.2-1_all.deb ... 121s Unpacking node-d3-color (1.4.1+~1.4.2-1) ... 121s Selecting previously unselected package node-d3-interpolate. 121s Preparing to unpack .../31-node-d3-interpolate_1.4.0+~1.4.2-1_all.deb ... 121s Unpacking node-d3-interpolate (1.4.0+~1.4.2-1) ... 122s Selecting previously unselected package node-d3-scale-chromatic. 122s Preparing to unpack .../32-node-d3-scale-chromatic_1.5.0+~1.5.1-1_all.deb ... 122s Unpacking node-d3-scale-chromatic (1.5.0+~1.5.1-1) ... 122s Selecting previously unselected package node-fortawesome-fontawesome-free. 122s Preparing to unpack .../33-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 122s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 122s Selecting previously unselected package node-natural-sort. 122s Preparing to unpack .../34-node-natural-sort_1.0.0-5_all.deb ... 122s Unpacking node-natural-sort (1.0.0-5) ... 122s Selecting previously unselected package node-normalize.css. 122s Preparing to unpack .../35-node-normalize.css_8.0.1-5_all.deb ... 122s Unpacking node-normalize.css (8.0.1-5) ... 122s Selecting previously unselected package node-thenby. 122s Preparing to unpack .../36-node-thenby_1.3.4+git20200720.0fd165a+ds-5_all.deb ... 122s Unpacking node-thenby (1.3.4+git20200720.0fd165a+ds-5) ... 122s Selecting previously unselected package python3.13. 122s Preparing to unpack .../37-python3.13_3.13.0-2_arm64.deb ... 122s Unpacking python3.13 (3.13.0-2) ... 122s Selecting previously unselected package python3-all. 122s Preparing to unpack .../38-python3-all_3.12.7-1_arm64.deb ... 122s Unpacking python3-all (3.12.7-1) ... 122s Selecting previously unselected package python3-bibtexparser. 122s Preparing to unpack .../39-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 122s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 122s Selecting previously unselected package python3-numpy. 122s Preparing to unpack .../40-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 122s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 122s Selecting previously unselected package python3-h5py-serial. 122s Preparing to unpack .../41-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ... 122s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 122s Selecting previously unselected package python3-h5py. 122s Preparing to unpack .../42-python3-h5py_3.11.0-5ubuntu1_all.deb ... 122s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 122s Selecting previously unselected package python3-colorama. 122s Preparing to unpack .../43-python3-colorama_0.4.6-4_all.deb ... 122s Unpacking python3-colorama (0.4.6-4) ... 122s Selecting previously unselected package python3-click. 122s Preparing to unpack .../44-python3-click_8.1.7-2_all.deb ... 122s Unpacking python3-click (8.1.7-2) ... 122s Selecting previously unselected package python3-six. 122s Preparing to unpack .../45-python3-six_1.16.0-7_all.deb ... 122s Unpacking python3-six (1.16.0-7) ... 122s Selecting previously unselected package python3-dateutil. 123s Preparing to unpack .../46-python3-dateutil_2.9.0-2_all.deb ... 123s Unpacking python3-dateutil (2.9.0-2) ... 123s Selecting previously unselected package python3-tz. 123s Preparing to unpack .../47-python3-tz_2024.1-2_all.deb ... 123s Unpacking python3-tz (2024.1-2) ... 123s Selecting previously unselected package python3-pandas-lib:arm64. 123s Preparing to unpack .../48-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 123s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 123s Selecting previously unselected package python3-pandas. 123s Preparing to unpack .../49-python3-pandas_2.2.3+dfsg-5_all.deb ... 123s Unpacking python3-pandas (2.2.3+dfsg-5) ... 123s Selecting previously unselected package python3-decorator. 123s Preparing to unpack .../50-python3-decorator_5.1.1-5_all.deb ... 123s Unpacking python3-decorator (5.1.1-5) ... 123s Selecting previously unselected package python3-scipy. 123s Preparing to unpack .../51-python3-scipy_1.13.1-5_arm64.deb ... 123s Unpacking python3-scipy (1.13.1-5) ... 123s Selecting previously unselected package python3-biom-format. 123s Preparing to unpack .../52-python3-biom-format_2.1.16-1_arm64.deb ... 123s Unpacking python3-biom-format (2.1.16-1) ... 124s Selecting previously unselected package python3-coverage. 124s Preparing to unpack .../53-python3-coverage_7.4.4+dfsg1-0ubuntu2_arm64.deb ... 124s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 124s Selecting previously unselected package python3-dill. 124s Preparing to unpack .../54-python3-dill_0.3.9-1_all.deb ... 124s Unpacking python3-dill (0.3.9-1) ... 124s Selecting previously unselected package python3-filelock. 124s Preparing to unpack .../55-python3-filelock_3.16.1-1_all.deb ... 124s Unpacking python3-filelock (3.16.1-1) ... 124s Selecting previously unselected package python3-itsdangerous. 124s Preparing to unpack .../56-python3-itsdangerous_2.2.0-1_all.deb ... 124s Unpacking python3-itsdangerous (2.2.0-1) ... 124s Selecting previously unselected package python3-werkzeug. 124s Preparing to unpack .../57-python3-werkzeug_3.0.4-1ubuntu1_all.deb ... 124s Unpacking python3-werkzeug (3.0.4-1ubuntu1) ... 124s Selecting previously unselected package python3-flask. 124s Preparing to unpack .../58-python3-flask_3.0.3-1ubuntu1_all.deb ... 124s Unpacking python3-flask (3.0.3-1ubuntu1) ... 124s Selecting previously unselected package python3-greenlet. 124s Preparing to unpack .../59-python3-greenlet_3.0.3-0ubuntu6_arm64.deb ... 124s Unpacking python3-greenlet (3.0.3-0ubuntu6) ... 124s Selecting previously unselected package python3-sqlalchemy. 124s Preparing to unpack .../60-python3-sqlalchemy_2.0.32+ds1-1ubuntu1_all.deb ... 124s Unpacking python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 124s Selecting previously unselected package python3-flask-sqlalchemy. 124s Preparing to unpack .../61-python3-flask-sqlalchemy_3.1.1-2_all.deb ... 124s Unpacking python3-flask-sqlalchemy (3.1.1-2) ... 124s Selecting previously unselected package python3-psutil. 124s Preparing to unpack .../62-python3-psutil_5.9.8-2build2_arm64.deb ... 124s Unpacking python3-psutil (5.9.8-2build2) ... 124s Selecting previously unselected package python3-public. 124s Preparing to unpack .../63-python3-public_4.1.0-2_all.deb ... 124s Unpacking python3-public (4.1.0-2) ... 124s Selecting previously unselected package python3-flufl.lock. 124s Preparing to unpack .../64-python3-flufl.lock_8.1.0-2_all.deb ... 124s Unpacking python3-flufl.lock (8.1.0-2) ... 124s Selecting previously unselected package python3-globus-sdk. 124s Preparing to unpack .../65-python3-globus-sdk_3.46.0-1_all.deb ... 124s Unpacking python3-globus-sdk (3.46.0-1) ... 124s Selecting previously unselected package python3-hdmedians. 124s Preparing to unpack .../66-python3-hdmedians_0.14.2-5.1build1_arm64.deb ... 124s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 124s Selecting previously unselected package python3-iniconfig. 124s Preparing to unpack .../67-python3-iniconfig_1.1.1-2_all.deb ... 124s Unpacking python3-iniconfig (1.1.1-2) ... 124s Selecting previously unselected package python3-lxml:arm64. 124s Preparing to unpack .../68-python3-lxml_5.3.0-1_arm64.deb ... 124s Unpacking python3-lxml:arm64 (5.3.0-1) ... 124s Selecting previously unselected package python3-natsort. 124s Preparing to unpack .../69-python3-natsort_8.0.2-2_all.deb ... 124s Unpacking python3-natsort (8.0.2-2) ... 124s Selecting previously unselected package python3-networkx. 125s Preparing to unpack .../70-python3-networkx_3.2.1-4ubuntu1_all.deb ... 125s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 125s Selecting previously unselected package python3-packaging. 125s Preparing to unpack .../71-python3-packaging_24.1-1_all.deb ... 125s Unpacking python3-packaging (24.1-1) ... 125s Selecting previously unselected package python3-setproctitle:arm64. 125s Preparing to unpack .../72-python3-setproctitle_1.3.3-1build2_arm64.deb ... 125s Unpacking python3-setproctitle:arm64 (1.3.3-1build2) ... 125s Selecting previously unselected package python3-tblib. 125s Preparing to unpack .../73-python3-tblib_3.0.0-5_all.deb ... 125s Unpacking python3-tblib (3.0.0-5) ... 125s Selecting previously unselected package python3-py. 125s Preparing to unpack .../74-python3-py_1.11.0-2_all.deb ... 125s Unpacking python3-py (1.11.0-2) ... 125s Selecting previously unselected package python3-zmq. 125s Preparing to unpack .../75-python3-zmq_24.0.1-5build1_arm64.deb ... 125s Unpacking python3-zmq (24.0.1-5build1) ... 125s Selecting previously unselected package python3-parsl. 125s Preparing to unpack .../76-python3-parsl_2024.11.04+ds-1_all.deb ... 125s Unpacking python3-parsl (2024.11.04+ds-1) ... 125s Selecting previously unselected package python3-patsy. 125s Preparing to unpack .../77-python3-patsy_0.5.6-1_all.deb ... 125s Unpacking python3-patsy (0.5.6-1) ... 125s Selecting previously unselected package python3-platformdirs. 125s Preparing to unpack .../78-python3-platformdirs_4.3.6-1_all.deb ... 125s Unpacking python3-platformdirs (4.3.6-1) ... 125s Selecting previously unselected package python3-pluggy. 125s Preparing to unpack .../79-python3-pluggy_1.5.0-1_all.deb ... 125s Unpacking python3-pluggy (1.5.0-1) ... 126s Selecting previously unselected package python3-pytest. 126s Preparing to unpack .../80-python3-pytest_8.3.3-1_all.deb ... 126s Unpacking python3-pytest (8.3.3-1) ... 126s Selecting previously unselected package libjs-jquery-isonscreen. 126s Preparing to unpack .../81-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 126s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 126s Selecting previously unselected package python3-pytest-cov. 126s Preparing to unpack .../82-python3-pytest-cov_5.0.0-1_all.deb ... 126s Unpacking python3-pytest-cov (5.0.0-1) ... 126s Selecting previously unselected package python3-statsmodels-lib:arm64. 126s Preparing to unpack .../83-python3-statsmodels-lib_0.14.4+dfsg-1_arm64.deb ... 126s Unpacking python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ... 126s Selecting previously unselected package python3-statsmodels. 126s Preparing to unpack .../84-python3-statsmodels_0.14.4+dfsg-1_all.deb ... 126s Unpacking python3-statsmodels (0.14.4+dfsg-1) ... 126s Selecting previously unselected package python3-skbio. 126s Preparing to unpack .../85-python3-skbio_0.6.2-3_arm64.deb ... 126s Unpacking python3-skbio (0.6.2-3) ... 126s Selecting previously unselected package python3-tomlkit. 126s Preparing to unpack .../86-python3-tomlkit_0.13.2-1_all.deb ... 126s Unpacking python3-tomlkit (0.13.2-1) ... 126s Selecting previously unselected package python3-tzlocal. 126s Preparing to unpack .../87-python3-tzlocal_5.2-1.1_all.deb ... 126s Unpacking python3-tzlocal (5.2-1.1) ... 126s Selecting previously unselected package qiime. 126s Preparing to unpack .../88-qiime_2024.5.0-1ubuntu2_all.deb ... 126s Unpacking qiime (2024.5.0-1ubuntu2) ... 126s Selecting previously unselected package q2templates. 126s Preparing to unpack .../89-q2templates_2024.5.0+ds-1_all.deb ... 126s Unpacking q2templates (2024.5.0+ds-1) ... 126s Selecting previously unselected package libyajl2:arm64. 126s Preparing to unpack .../90-libyajl2_2.1.0-5build1_arm64.deb ... 126s Unpacking libyajl2:arm64 (2.1.0-5build1) ... 126s Selecting previously unselected package python3-ijson. 127s Preparing to unpack .../91-python3-ijson_3.3.0-1_arm64.deb ... 127s Unpacking python3-ijson (3.3.0-1) ... 127s Selecting previously unselected package q2-types. 127s Preparing to unpack .../92-q2-types_2024.5.0-1ubuntu2_all.deb ... 127s Unpacking q2-types (2024.5.0-1ubuntu2) ... 127s Selecting previously unselected package q2-taxa. 127s Preparing to unpack .../93-q2-taxa_2024.5.0+dfsg-1build1_all.deb ... 127s Unpacking q2-taxa (2024.5.0+dfsg-1build1) ... 127s Selecting previously unselected package autopkgtest-satdep. 127s Preparing to unpack .../94-1-autopkgtest-satdep.deb ... 127s Unpacking autopkgtest-satdep (0) ... 127s Setting up javascript-common (11+nmu1) ... 127s Setting up python3-iniconfig (1.1.1-2) ... 128s Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ... 128s Setting up node-d3-color (1.4.1+~1.4.2-1) ... 128s Setting up python3-filelock (3.16.1-1) ... 128s Setting up node-d3-interpolate (1.4.0+~1.4.2-1) ... 128s Setting up libsodium23:arm64 (1.0.18-1build3) ... 128s Setting up python3-tblib (3.0.0-5) ... 128s Setting up python3-py (1.11.0-2) ... 128s Setting up node-natural-sort (1.0.0-5) ... 128s Setting up libjs-popper.js (1.16.1+ds-6) ... 129s Setting up python3-colorama (0.4.6-4) ... 129s Setting up python3-public (4.1.0-2) ... 129s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 129s Setting up node-d3-scale-chromatic (1.5.0+~1.5.1-1) ... 129s Setting up libyajl2:arm64 (2.1.0-5build1) ... 129s Setting up python3-itsdangerous (2.2.0-1) ... 129s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 130s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 130s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 130s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 130s Setting up python3-click (8.1.7-2) ... 131s Setting up python3-networkx (3.2.1-4ubuntu1) ... 134s Setting up libaec0:arm64 (1.1.3-1) ... 134s Setting up python3-platformdirs (4.3.6-1) ... 134s Setting up python3-psutil (5.9.8-2build2) ... 135s Setting up python3-tz (2024.1-2) ... 135s Setting up python3-natsort (8.0.2-2) ... 135s Setting up python3-flufl.lock (8.1.0-2) ... 135s Setting up python3-six (1.16.0-7) ... 136s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 136s Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ... 136s Setting up python3-decorator (5.1.1-5) ... 136s Setting up libblas3:arm64 (3.12.0-3build2) ... 136s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 136s Setting up python3-packaging (24.1-1) ... 136s Setting up python3-dill (0.3.9-1) ... 137s Setting up liblzf1:arm64 (3.6-4) ... 137s Setting up python3-greenlet (3.0.3-0ubuntu6) ... 137s Setting up python3-setproctitle:arm64 (1.3.3-1build2) ... 138s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 138s Setting up python3-pluggy (1.5.0-1) ... 138s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 138s Setting up python3.13-minimal (3.13.0-2) ... 139s Setting up python3-dateutil (2.9.0-2) ... 139s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 139s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 139s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 139s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 139s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 139s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 139s Setting up python3-tzlocal (5.2-1.1) ... 140s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 140s Setting up python3-tomlkit (0.13.2-1) ... 140s Setting up node-normalize.css (8.0.1-5) ... 140s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 140s Setting up libssw0:arm64 (1.1-15) ... 140s Setting up node-thenby (1.3.4+git20200720.0fd165a+ds-5) ... 140s Setting up python3-globus-sdk (3.46.0-1) ... 141s Setting up libsz2:arm64 (1.1.3-1) ... 141s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 141s Setting up liblapack3:arm64 (3.12.0-3build2) ... 141s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 141s Setting up libopenblas0-pthread:arm64 (0.3.28+ds-3) ... 141s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 141s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 141s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 141s Setting up libzmq5:arm64 (4.3.5-1build2) ... 141s Setting up python3-ijson (3.3.0-1) ... 141s Setting up python3.13 (3.13.0-2) ... 142s Setting up python3-pytest (8.3.3-1) ... 143s Setting up python3-all (3.12.7-1) ... 143s Setting up python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 146s Setting up python3-werkzeug (3.0.4-1ubuntu1) ... 147s Setting up python3-zmq (24.0.1-5build1) ... 147s Setting up libjs-jquery-metadata (12-4) ... 147s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 147s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 151s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 151s Setting up python3-hdmedians (0.14.2-5.1build1) ... 152s Setting up libopenblas0:arm64 (0.3.28+ds-3) ... 152s Setting up python3-lxml:arm64 (5.3.0-1) ... 152s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 152s Setting up python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ... 152s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 152s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 152s Setting up python3-scipy (1.13.1-5) ... 160s Setting up python3-flask (3.0.3-1ubuntu1) ... 160s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 160s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 161s Setting up python3-pytest-cov (5.0.0-1) ... 161s Setting up python3-patsy (0.5.6-1) ... 162s Setting up python3-pandas (2.2.3+dfsg-5) ... 173s Setting up python3-h5py (3.11.0-5ubuntu1) ... 174s Setting up python3-statsmodels (0.14.4+dfsg-1) ... 180s Setting up python3-flask-sqlalchemy (3.1.1-2) ... 180s Setting up q2templates (2024.5.0+ds-1) ... 181s Setting up python3-parsl (2024.11.04+ds-1) ... 182s Setting up qiime (2024.5.0-1ubuntu2) ... 183s Setting up python3-biom-format (2.1.16-1) ... 183s Setting up python3-skbio (0.6.2-3) ... 185s Setting up q2-types (2024.5.0-1ubuntu2) ... 185s Setting up q2-taxa (2024.5.0+dfsg-1build1) ... 185s Setting up autopkgtest-satdep (0) ... 185s Processing triggers for systemd (256.5-2ubuntu4) ... 186s Processing triggers for man-db (2.12.1-3) ... 186s Processing triggers for libc-bin (2.40-1ubuntu3) ... 192s (Reading database ... 97011 files and directories currently installed.) 192s Removing autopkgtest-satdep (0) ... 193s autopkgtest [11:08:00]: test run-unit-test: [----------------------- 194s ============================= test session starts ============================== 194s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 194s cachedir: .pytest_cache 194s rootdir: /tmp/autopkgtest.h3X4b4/autopkgtest_tmp 194s plugins: cov-5.0.0, typeguard-4.4.1 195s collecting ... collected 0 items / 3 errors 195s 195s ==================================== ERRORS ==================================== 195s ________________ ERROR collecting q2_taxa/tests/test_methods.py ________________ 195s ImportError while importing test module '/tmp/autopkgtest.h3X4b4/autopkgtest_tmp/q2_taxa/tests/test_methods.py'. 195s Hint: make sure your test modules/packages have valid Python names. 195s Traceback: 195s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 195s return _bootstrap._gcd_import(name[level:], package, level) 195s q2_taxa/__init__.py:9: in 195s from ._method import collapse, filter_table, filter_seqs 195s q2_taxa/_method.py:9: in 195s import pandas as pd 195s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 195s raise ImportError( 195s E ImportError: Unable to import required dependencies: 195s E numpy: Error importing numpy: you should not try to import numpy from 195s E its source directory; please exit the numpy source tree, and relaunch 195s E your python interpreter from there. 195s _____________ ERROR collecting q2_taxa/tests/test_plugin_setup.py ______________ 195s ImportError while importing test module '/tmp/autopkgtest.h3X4b4/autopkgtest_tmp/q2_taxa/tests/test_plugin_setup.py'. 195s Hint: make sure your test modules/packages have valid Python names. 195s Traceback: 195s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 195s return _bootstrap._gcd_import(name[level:], package, level) 195s q2_taxa/__init__.py:9: in 195s from ._method import collapse, filter_table, filter_seqs 195s q2_taxa/_method.py:9: in 195s import pandas as pd 195s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 195s raise ImportError( 195s E ImportError: Unable to import required dependencies: 195s E numpy: Error importing numpy: you should not try to import numpy from 195s E its source directory; please exit the numpy source tree, and relaunch 195s E your python interpreter from there. 195s ______________ ERROR collecting q2_taxa/tests/test_visualizer.py _______________ 195s ImportError while importing test module '/tmp/autopkgtest.h3X4b4/autopkgtest_tmp/q2_taxa/tests/test_visualizer.py'. 195s Hint: make sure your test modules/packages have valid Python names. 195s Traceback: 195s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 195s return _bootstrap._gcd_import(name[level:], package, level) 195s q2_taxa/__init__.py:9: in 195s from ._method import collapse, filter_table, filter_seqs 195s q2_taxa/_method.py:9: in 195s import pandas as pd 195s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 195s raise ImportError( 195s E ImportError: Unable to import required dependencies: 195s E numpy: Error importing numpy: you should not try to import numpy from 195s E its source directory; please exit the numpy source tree, and relaunch 195s E your python interpreter from there. 195s 195s ---------- coverage: platform linux, python 3.13.0-final-0 ----------- 195s Name Stmts Miss Cover 195s -------------------------------------------------------- 195s q2_taxa/__init__.py 6 5 17% 195s q2_taxa/_examples.py 14 14 0% 195s q2_taxa/_method.py 54 53 2% 195s q2_taxa/_util.py 27 27 0% 195s q2_taxa/_version.py 4 4 0% 195s q2_taxa/_visualizer.py 51 51 0% 195s q2_taxa/plugin_setup.py 12 12 0% 195s q2_taxa/tests/__init__.py 0 0 100% 195s q2_taxa/tests/test_methods.py 436 436 0% 195s q2_taxa/tests/test_plugin_setup.py 7 7 0% 195s q2_taxa/tests/test_visualizer.py 61 61 0% 195s -------------------------------------------------------- 195s TOTAL 672 670 1% 195s 195s =========================== short test summary info ============================ 195s ERROR q2_taxa/tests/test_methods.py 195s ERROR q2_taxa/tests/test_plugin_setup.py 195s ERROR q2_taxa/tests/test_visualizer.py 195s !!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection !!!!!!!!!!!!!!!!!!!! 195s ============================== 3 errors in 0.51s =============================== 195s autopkgtest [11:08:02]: test run-unit-test: -----------------------] 196s run-unit-test FAIL non-zero exit status 2 196s autopkgtest [11:08:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 196s autopkgtest [11:08:03]: @@@@@@@@@@@@@@@@@@@@ summary 196s run-unit-test FAIL non-zero exit status 2 202s virt: nova [W] Skipping flock in bos03-arm64 202s virt: Creating nova instance adt-plucky-arm64-q2-taxa-20241113-110446-juju-7f2275-prod-proposed-migration-environment-2-ed7afe39-67ee-4b07-a95a-4c06598f6681 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...