0s autopkgtest [11:04:32]: starting date and time: 2024-11-13 11:04:32+0000
  0s autopkgtest [11:04:32]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [11:04:32]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yzwgr0z3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-emperor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-41.secgroup --name adt-plucky-arm64-q2-emperor-20241113-110432-juju-7f2275-prod-proposed-migration-environment-20-c96ee239-8d0d-4b03-9a35-bff6c8812d65 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 75s autopkgtest [11:05:47]: testbed dpkg architecture: arm64
 75s autopkgtest [11:05:47]: testbed apt version: 2.9.8
 75s autopkgtest [11:05:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 77s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 77s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 77s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 77s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
 77s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 77s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
 77s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
 77s Fetched 1794 kB in 1s (2145 kB/s)
 77s Reading package lists...
 80s Reading package lists...
 80s Building dependency tree...
 80s Reading state information...
 81s Calculating upgrade...
 82s The following NEW packages will be installed:
 82s   python3.13-gdbm
 82s The following packages will be upgraded:
 82s   libpython3-stdlib python3 python3-gdbm python3-minimal
 82s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 82s Need to get 101 kB of archives.
 82s After this operation, 141 kB of additional disk space will be used.
 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
 82s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
 82s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
 82s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
 82s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
 82s Fetched 101 kB in 0s (282 kB/s)
 83s (Reading database ... 
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(Reading database ... 15%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 83s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
 83s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 83s Setting up python3-minimal (3.12.7-1) ...
 83s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 30%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 83s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
 83s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 83s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
 83s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 83s Selecting previously unselected package python3.13-gdbm.
 83s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
 83s Unpacking python3.13-gdbm (3.13.0-2) ...
 83s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
 83s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 83s Setting up python3.13-gdbm (3.13.0-2) ...
 83s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
 83s Setting up python3 (3.12.7-1) ...
 84s Setting up python3-gdbm:arm64 (3.12.7-1) ...
 84s Processing triggers for man-db (2.12.1-3) ...
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 87s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 87s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 87s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 87s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 88s Reading package lists...
 88s Reading package lists...
 89s Building dependency tree...
 89s Reading state information...
 90s Calculating upgrade...
 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 91s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 96s autopkgtest [11:06:08]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 96s autopkgtest [11:06:08]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-emperor
 98s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (dsc) [2309 B]
 98s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (tar) [244 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (diff) [9132 B]
 98s gpgv: Signature made Sun Jun 30 07:17:02 2024 UTC
 98s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
 98s gpgv: Can't check signature: No public key
 98s dpkg-source: warning: cannot verify inline signature for ./q2-emperor_2024.5.0-2.dsc: no acceptable signature found
 99s autopkgtest [11:06:11]: testing package q2-emperor version 2024.5.0-2
 99s autopkgtest [11:06:11]: build not needed
 99s autopkgtest [11:06:11]: test run-unit-test: preparing testbed
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Starting pkgProblemResolver with broken count: 0
104s Starting 2 pkgProblemResolver with broken count: 0
104s Done
105s The following additional packages will be installed:
105s   fonts-glyphicons-halflings javascript-common libaec0 libblas3 libgfortran5
105s   libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-bootstrap libjs-jquery
105s   libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata
105s   libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui
105s   libjs-popper.js liblapack3 liblbfgsb0 liblzf1 libnorm1t64 libopenblas0
105s   libopenblas0-pthread libpgm-5.3-0t64 libpython3.13-minimal
105s   libpython3.13-stdlib libsodium23 libssw0 libsz2 libxslt1.1 libyajl2 libzmq5
105s   node-fortawesome-fontawesome-free node-normalize.css python3-all
105s   python3-bibtexparser python3-biom-format python3-click python3-colorama
105s   python3-coverage python3-dateutil python3-decorator python3-dill
105s   python3-emperor python3-filelock python3-flask python3-flask-sqlalchemy
105s   python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py
105s   python3-h5py-serial python3-hdmedians python3-ijson python3-iniconfig
105s   python3-itsdangerous python3-lxml python3-natsort python3-networkx
105s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
105s   python3-parsl python3-patsy python3-platformdirs python3-pluggy
105s   python3-psutil python3-public python3-py python3-pytest python3-pytest-cov
105s   python3-scipy python3-setproctitle python3-six python3-skbio
105s   python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib
105s   python3-tomlkit python3-tz python3-tzlocal python3-werkzeug python3-zmq
105s   python3.13 python3.13-minimal q2-emperor q2-types q2templates qiime
105s Suggested packages:
105s   apache2 | lighttpd | httpd libjs-jquery-ui-docs libjs-html5shiv
105s   python-biom-format-doc python-coverage-doc python3-objgraph python3-dotenv
105s   python-flask-doc python-flufl.lock-doc python-greenlet-dev
105s   python-greenlet-doc python-h5py-doc python-lxml-doc python-natsort-doc
105s   python3-gdal python3-matplotlib python3-pydot python3-pygraphviz gcc
105s   gfortran python-numpy-doc python3-dev python-pandas-doc python-patsy-doc
105s   python-public-doc subversion python-scipy-doc python-skbio-doc
105s   python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2
105s   python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector
105s   python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql
105s   python3-cx-oracle python3-oracledb python-statsmodels-doc ipython3
105s   python-werkzeug-doc python3-watchdog python3.13-venv python3.13-doc
105s   binfmt-support
105s Recommended packages:
105s   node-jquery python3-asgiref python3-simplejson python3-bs4 python3-cssselect
105s   python3-html5lib python3-matplotlib python3-bottleneck python3-numexpr
105s   python3-odf python3-openpyxl python3-tables r-cran-plotly g++ | c++-compiler
105s   python3-pil python3-sqlalchemy-ext python3-joblib python3-cvxopt
105s   python3-pyinotify q2cli q2-cutadapt q2-metadata q2-demux q2-quality-filter
105s   q2-feature-classifier q2-feature-table
105s The following NEW packages will be installed:
105s   autopkgtest-satdep fonts-glyphicons-halflings javascript-common libaec0
105s   libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64
105s   libjs-bootstrap libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
105s   libjs-jquery-metadata libjs-jquery-tablesorter
105s   libjs-jquery-throttle-debounce libjs-jquery-ui libjs-popper.js liblapack3
105s   liblbfgsb0 liblzf1 libnorm1t64 libopenblas0 libopenblas0-pthread
105s   libpgm-5.3-0t64 libpython3.13-minimal libpython3.13-stdlib libsodium23
105s   libssw0 libsz2 libxslt1.1 libyajl2 libzmq5 node-fortawesome-fontawesome-free
105s   node-normalize.css python3-all python3-bibtexparser python3-biom-format
105s   python3-click python3-colorama python3-coverage python3-dateutil
105s   python3-decorator python3-dill python3-emperor python3-filelock
105s   python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk
105s   python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians
105s   python3-ijson python3-iniconfig python3-itsdangerous python3-lxml
105s   python3-natsort python3-networkx python3-numpy python3-packaging
105s   python3-pandas python3-pandas-lib python3-parsl python3-patsy
105s   python3-platformdirs python3-pluggy python3-psutil python3-public python3-py
105s   python3-pytest python3-pytest-cov python3-scipy python3-setproctitle
105s   python3-six python3-skbio python3-sqlalchemy python3-statsmodels
105s   python3-statsmodels-lib python3-tblib python3-tomlkit python3-tz
105s   python3-tzlocal python3-werkzeug python3-zmq python3.13 python3.13-minimal
105s   q2-emperor q2-types q2templates qiime
105s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded.
105s Need to get 79.3 MB/79.3 MB of archives.
105s After this operation, 424 MB of additional disk space will be used.
105s Get:1 /tmp/autopkgtest.ligt3l/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
105s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
106s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
107s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
107s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
107s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
107s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 11+nmu1 [5936 B]
107s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
107s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
107s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
107s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
107s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
107s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
107s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
107s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
107s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-metadata all 12-4 [6582 B]
107s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB]
107s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB]
107s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
107s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
107s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas0-pthread arm64 0.3.28+ds-3 [5853 kB]
108s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
108s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
108s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
108s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1build1 [150 kB]
108s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas0 arm64 0.3.28+ds-3 [6240 B]
108s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1build1 [162 kB]
109s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
109s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libsodium23 arm64 1.0.18-1build3 [119 kB]
109s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB]
109s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB]
109s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzmq5 arm64 4.3.5-1build2 [247 kB]
109s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB]
109s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
109s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
109s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
109s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB]
109s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
109s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB]
109s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
109s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB]
109s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB]
109s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
109s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
109s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
109s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB]
109s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
109s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
109s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
110s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB]
110s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-coverage arm64 7.4.4+dfsg1-0ubuntu2 [148 kB]
110s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dill all 0.3.9-1 [84.5 kB]
110s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB]
110s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
110s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 0.5.6-1 [181 kB]
110s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1 [1627 kB]
110s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB]
110s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB]
110s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-3 [1391 kB]
110s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-emperor all 1.0.3+ds-9.1 [133 kB]
110s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-filelock all 3.16.1-1 [12.8 kB]
110s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-itsdangerous all 2.2.0-1 [15.2 kB]
110s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-werkzeug all 3.0.4-1ubuntu1 [171 kB]
110s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB]
110s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-greenlet arm64 3.0.3-0ubuntu6 [153 kB]
110s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sqlalchemy all 2.0.32+ds1-1ubuntu1 [1206 kB]
110s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-flask-sqlalchemy all 3.1.1-2 [30.9 kB]
110s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB]
110s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-public all 4.1.0-2 [7130 B]
110s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-flufl.lock all 8.1.0-2 [12.5 kB]
110s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-globus-sdk all 3.46.0-1 [266 kB]
110s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
110s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB]
110s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
111s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-setproctitle arm64 1.3.3-1build2 [18.6 kB]
111s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tblib all 3.0.0-5 [12.9 kB]
111s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-py all 1.11.0-2 [72.7 kB]
111s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-zmq arm64 24.0.1-5build1 [280 kB]
111s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-parsl all 2024.11.04+ds-1 [277 kB]
111s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB]
111s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
111s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
111s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B]
111s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-cov all 5.0.0-1 [21.3 kB]
111s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tomlkit all 0.13.2-1 [37.6 kB]
111s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tzlocal all 5.2-1.1 [20.5 kB]
111s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2templates all 2024.5.0+ds-1 [12.0 kB]
111s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libyajl2 arm64 2.1.0-5build1 [19.7 kB]
111s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ijson arm64 3.3.0-1 [36.7 kB]
111s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 qiime all 2024.5.0-1ubuntu2 [312 kB]
111s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2-types all 2024.5.0-1ubuntu2 [5755 kB]
111s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 q2-emperor all 2024.5.0-2 [12.9 kB]
111s Fetched 79.3 MB in 6s (13.9 MB/s)
111s Selecting previously unselected package libpython3.13-minimal:arm64.
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112s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ...
112s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
112s Selecting previously unselected package python3.13-minimal.
112s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ...
112s Unpacking python3.13-minimal (3.13.0-2) ...
112s Selecting previously unselected package libjs-jquery.
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112s Selecting previously unselected package libjs-jquery-hotkeys.
112s Preparing to unpack .../03-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ...
112s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
112s Selecting previously unselected package fonts-glyphicons-halflings.
112s Preparing to unpack .../04-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
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112s Selecting previously unselected package javascript-common.
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112s Unpacking javascript-common (11+nmu1) ...
112s Selecting previously unselected package libaec0:arm64.
112s Preparing to unpack .../06-libaec0_1.1.3-1_arm64.deb ...
112s Unpacking libaec0:arm64 (1.1.3-1) ...
112s Selecting previously unselected package libblas3:arm64.
112s Preparing to unpack .../07-libblas3_3.12.0-3build2_arm64.deb ...
112s Unpacking libblas3:arm64 (3.12.0-3build2) ...
112s Selecting previously unselected package libgfortran5:arm64.
112s Preparing to unpack .../08-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
112s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
112s Selecting previously unselected package libgomp1:arm64.
112s Preparing to unpack .../09-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
112s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
112s Selecting previously unselected package libsz2:arm64.
112s Preparing to unpack .../10-libsz2_1.1.3-1_arm64.deb ...
112s Unpacking libsz2:arm64 (1.1.3-1) ...
112s Selecting previously unselected package libhdf5-103-1t64:arm64.
112s Preparing to unpack .../11-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
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112s Selecting previously unselected package libhdf5-hl-100t64:arm64.
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112s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
112s Selecting previously unselected package libjs-bootstrap.
112s Preparing to unpack .../13-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
112s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
112s Selecting previously unselected package libjs-jquery-metadata.
112s Preparing to unpack .../14-libjs-jquery-metadata_12-4_all.deb ...
112s Unpacking libjs-jquery-metadata (12-4) ...
112s Selecting previously unselected package libjs-jquery-tablesorter.
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112s Selecting previously unselected package libjs-jquery-throttle-debounce.
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112s Selecting previously unselected package libjs-jquery-ui.
112s Preparing to unpack .../17-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
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112s Selecting previously unselected package libjs-popper.js.
112s Preparing to unpack .../18-libjs-popper.js_1.16.1+ds-6_all.deb ...
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112s Selecting previously unselected package libopenblas0-pthread:arm64.
113s Preparing to unpack .../19-libopenblas0-pthread_0.3.28+ds-3_arm64.deb ...
113s Unpacking libopenblas0-pthread:arm64 (0.3.28+ds-3) ...
113s Selecting previously unselected package liblapack3:arm64.
113s Preparing to unpack .../20-liblapack3_3.12.0-3build2_arm64.deb ...
113s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
113s Selecting previously unselected package liblbfgsb0:arm64.
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113s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
113s Selecting previously unselected package liblzf1:arm64.
113s Preparing to unpack .../22-liblzf1_3.6-4_arm64.deb ...
113s Unpacking liblzf1:arm64 (3.6-4) ...
113s Selecting previously unselected package libnorm1t64:arm64.
113s Preparing to unpack .../23-libnorm1t64_1.5.9+dfsg-3.1build1_arm64.deb ...
113s Unpacking libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ...
113s Selecting previously unselected package libopenblas0:arm64.
113s Preparing to unpack .../24-libopenblas0_0.3.28+ds-3_arm64.deb ...
113s Unpacking libopenblas0:arm64 (0.3.28+ds-3) ...
113s Selecting previously unselected package libpgm-5.3-0t64:arm64.
113s Preparing to unpack .../25-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_arm64.deb ...
113s Unpacking libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ...
113s Selecting previously unselected package libpython3.13-stdlib:arm64.
113s Preparing to unpack .../26-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
113s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
113s Selecting previously unselected package libsodium23:arm64.
113s Preparing to unpack .../27-libsodium23_1.0.18-1build3_arm64.deb ...
113s Unpacking libsodium23:arm64 (1.0.18-1build3) ...
113s Selecting previously unselected package libssw0:arm64.
113s Preparing to unpack .../28-libssw0_1.1-15_arm64.deb ...
113s Unpacking libssw0:arm64 (1.1-15) ...
113s Selecting previously unselected package libxslt1.1:arm64.
113s Preparing to unpack .../29-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ...
113s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ...
113s Selecting previously unselected package libzmq5:arm64.
113s Preparing to unpack .../30-libzmq5_4.3.5-1build2_arm64.deb ...
113s Unpacking libzmq5:arm64 (4.3.5-1build2) ...
113s Selecting previously unselected package node-fortawesome-fontawesome-free.
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114s Selecting previously unselected package node-normalize.css.
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114s Unpacking node-normalize.css (8.0.1-5) ...
114s Selecting previously unselected package python3.13.
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114s Unpacking python3.13 (3.13.0-2) ...
114s Selecting previously unselected package python3-all.
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114s Selecting previously unselected package python3-bibtexparser.
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114s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ...
114s Selecting previously unselected package python3-numpy.
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114s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
114s Selecting previously unselected package python3-h5py-serial.
114s Preparing to unpack .../37-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ...
114s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ...
114s Selecting previously unselected package python3-h5py.
114s Preparing to unpack .../38-python3-h5py_3.11.0-5ubuntu1_all.deb ...
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114s Selecting previously unselected package python3-colorama.
114s Preparing to unpack .../39-python3-colorama_0.4.6-4_all.deb ...
114s Unpacking python3-colorama (0.4.6-4) ...
114s Selecting previously unselected package python3-click.
114s Preparing to unpack .../40-python3-click_8.1.7-2_all.deb ...
114s Unpacking python3-click (8.1.7-2) ...
114s Selecting previously unselected package python3-six.
114s Preparing to unpack .../41-python3-six_1.16.0-7_all.deb ...
114s Unpacking python3-six (1.16.0-7) ...
114s Selecting previously unselected package python3-dateutil.
114s Preparing to unpack .../42-python3-dateutil_2.9.0-2_all.deb ...
114s Unpacking python3-dateutil (2.9.0-2) ...
114s Selecting previously unselected package python3-tz.
114s Preparing to unpack .../43-python3-tz_2024.1-2_all.deb ...
114s Unpacking python3-tz (2024.1-2) ...
114s Selecting previously unselected package python3-pandas-lib:arm64.
114s Preparing to unpack .../44-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ...
114s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
114s Selecting previously unselected package python3-pandas.
114s Preparing to unpack .../45-python3-pandas_2.2.3+dfsg-5_all.deb ...
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115s Selecting previously unselected package python3-decorator.
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115s Unpacking python3-decorator (5.1.1-5) ...
115s Selecting previously unselected package python3-scipy.
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115s Unpacking python3-scipy (1.13.1-5) ...
115s Selecting previously unselected package python3-biom-format.
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115s Unpacking python3-biom-format (2.1.16-1) ...
115s Selecting previously unselected package python3-coverage.
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115s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ...
115s Selecting previously unselected package python3-dill.
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115s Selecting previously unselected package python3-natsort.
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115s Unpacking python3-natsort (8.0.2-2) ...
115s Selecting previously unselected package python3-packaging.
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115s Unpacking python3-packaging (24.1-1) ...
115s Selecting previously unselected package python3-patsy.
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115s Unpacking python3-patsy (0.5.6-1) ...
115s Selecting previously unselected package python3-statsmodels-lib:arm64.
116s Preparing to unpack .../54-python3-statsmodels-lib_0.14.4+dfsg-1_arm64.deb ...
116s Unpacking python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ...
116s Selecting previously unselected package python3-statsmodels.
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116s Unpacking python3-statsmodels (0.14.4+dfsg-1) ...
116s Selecting previously unselected package python3-hdmedians.
116s Preparing to unpack .../56-python3-hdmedians_0.14.2-5.1build1_arm64.deb ...
116s Unpacking python3-hdmedians (0.14.2-5.1build1) ...
116s Selecting previously unselected package python3-skbio.
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116s Unpacking python3-skbio (0.6.2-3) ...
116s Selecting previously unselected package python3-emperor.
116s Preparing to unpack .../58-python3-emperor_1.0.3+ds-9.1_all.deb ...
116s Unpacking python3-emperor (1.0.3+ds-9.1) ...
116s Selecting previously unselected package python3-filelock.
116s Preparing to unpack .../59-python3-filelock_3.16.1-1_all.deb ...
116s Unpacking python3-filelock (3.16.1-1) ...
116s Selecting previously unselected package python3-itsdangerous.
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116s Selecting previously unselected package python3-werkzeug.
116s Preparing to unpack .../61-python3-werkzeug_3.0.4-1ubuntu1_all.deb ...
116s Unpacking python3-werkzeug (3.0.4-1ubuntu1) ...
116s Selecting previously unselected package python3-flask.
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116s Unpacking python3-flask (3.0.3-1ubuntu1) ...
116s Selecting previously unselected package python3-greenlet.
116s Preparing to unpack .../63-python3-greenlet_3.0.3-0ubuntu6_arm64.deb ...
116s Unpacking python3-greenlet (3.0.3-0ubuntu6) ...
116s Selecting previously unselected package python3-sqlalchemy.
116s Preparing to unpack .../64-python3-sqlalchemy_2.0.32+ds1-1ubuntu1_all.deb ...
116s Unpacking python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ...
116s Selecting previously unselected package python3-flask-sqlalchemy.
116s Preparing to unpack .../65-python3-flask-sqlalchemy_3.1.1-2_all.deb ...
116s Unpacking python3-flask-sqlalchemy (3.1.1-2) ...
116s Selecting previously unselected package python3-psutil.
116s Preparing to unpack .../66-python3-psutil_5.9.8-2build2_arm64.deb ...
116s Unpacking python3-psutil (5.9.8-2build2) ...
117s Selecting previously unselected package python3-public.
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117s Unpacking python3-public (4.1.0-2) ...
117s Selecting previously unselected package python3-flufl.lock.
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117s Unpacking python3-flufl.lock (8.1.0-2) ...
117s Selecting previously unselected package python3-globus-sdk.
117s Preparing to unpack .../69-python3-globus-sdk_3.46.0-1_all.deb ...
117s Unpacking python3-globus-sdk (3.46.0-1) ...
117s Selecting previously unselected package python3-iniconfig.
117s Preparing to unpack .../70-python3-iniconfig_1.1.1-2_all.deb ...
117s Unpacking python3-iniconfig (1.1.1-2) ...
117s Selecting previously unselected package python3-lxml:arm64.
117s Preparing to unpack .../71-python3-lxml_5.3.0-1_arm64.deb ...
117s Unpacking python3-lxml:arm64 (5.3.0-1) ...
117s Selecting previously unselected package python3-networkx.
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117s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
117s Selecting previously unselected package python3-setproctitle:arm64.
117s Preparing to unpack .../73-python3-setproctitle_1.3.3-1build2_arm64.deb ...
117s Unpacking python3-setproctitle:arm64 (1.3.3-1build2) ...
117s Selecting previously unselected package python3-tblib.
117s Preparing to unpack .../74-python3-tblib_3.0.0-5_all.deb ...
117s Unpacking python3-tblib (3.0.0-5) ...
117s Selecting previously unselected package python3-py.
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117s Unpacking python3-py (1.11.0-2) ...
117s Selecting previously unselected package python3-zmq.
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118s Unpacking python3-zmq (24.0.1-5build1) ...
118s Selecting previously unselected package python3-parsl.
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118s Unpacking python3-parsl (2024.11.04+ds-1) ...
118s Selecting previously unselected package python3-platformdirs.
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118s Unpacking python3-platformdirs (4.3.6-1) ...
118s Selecting previously unselected package python3-pluggy.
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118s Unpacking python3-pluggy (1.5.0-1) ...
118s Selecting previously unselected package python3-pytest.
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118s Unpacking python3-pytest (8.3.3-1) ...
118s Selecting previously unselected package libjs-jquery-isonscreen.
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118s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ...
118s Selecting previously unselected package python3-pytest-cov.
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118s Unpacking python3-pytest-cov (5.0.0-1) ...
118s Selecting previously unselected package python3-tomlkit.
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118s Unpacking python3-tomlkit (0.13.2-1) ...
118s Selecting previously unselected package python3-tzlocal.
118s Preparing to unpack .../84-python3-tzlocal_5.2-1.1_all.deb ...
118s Unpacking python3-tzlocal (5.2-1.1) ...
118s Selecting previously unselected package q2templates.
118s Preparing to unpack .../85-q2templates_2024.5.0+ds-1_all.deb ...
118s Unpacking q2templates (2024.5.0+ds-1) ...
118s Selecting previously unselected package libyajl2:arm64.
118s Preparing to unpack .../86-libyajl2_2.1.0-5build1_arm64.deb ...
118s Unpacking libyajl2:arm64 (2.1.0-5build1) ...
118s Selecting previously unselected package python3-ijson.
118s Preparing to unpack .../87-python3-ijson_3.3.0-1_arm64.deb ...
118s Unpacking python3-ijson (3.3.0-1) ...
118s Selecting previously unselected package qiime.
118s Preparing to unpack .../88-qiime_2024.5.0-1ubuntu2_all.deb ...
118s Unpacking qiime (2024.5.0-1ubuntu2) ...
118s Selecting previously unselected package q2-types.
118s Preparing to unpack .../89-q2-types_2024.5.0-1ubuntu2_all.deb ...
118s Unpacking q2-types (2024.5.0-1ubuntu2) ...
118s Selecting previously unselected package q2-emperor.
118s Preparing to unpack .../90-q2-emperor_2024.5.0-2_all.deb ...
118s Unpacking q2-emperor (2024.5.0-2) ...
119s Selecting previously unselected package autopkgtest-satdep.
119s Preparing to unpack .../91-1-autopkgtest-satdep.deb ...
119s Unpacking autopkgtest-satdep (0) ...
119s Setting up javascript-common (11+nmu1) ...
119s Setting up python3-iniconfig (1.1.1-2) ...
119s Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ...
119s Setting up python3-filelock (3.16.1-1) ...
119s Setting up libsodium23:arm64 (1.0.18-1build3) ...
119s Setting up python3-tblib (3.0.0-5) ...
119s Setting up python3-py (1.11.0-2) ...
120s Setting up libjs-popper.js (1.16.1+ds-6) ...
120s Setting up python3-colorama (0.4.6-4) ...
120s Setting up python3-public (4.1.0-2) ...
120s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
120s Setting up libyajl2:arm64 (2.1.0-5build1) ...
120s Setting up python3-itsdangerous (2.2.0-1) ...
120s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ...
121s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ...
121s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ...
121s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
121s Setting up python3-click (8.1.7-2) ...
121s Setting up python3-networkx (3.2.1-4ubuntu1) ...
124s Setting up libaec0:arm64 (1.1.3-1) ...
124s Setting up python3-platformdirs (4.3.6-1) ...
124s Setting up python3-psutil (5.9.8-2build2) ...
125s Setting up python3-tz (2024.1-2) ...
125s Setting up python3-natsort (8.0.2-2) ...
125s Setting up python3-flufl.lock (8.1.0-2) ...
125s Setting up python3-six (1.16.0-7) ...
126s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
126s Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ...
126s Setting up python3-decorator (5.1.1-5) ...
126s Setting up libblas3:arm64 (3.12.0-3build2) ...
126s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
126s Setting up python3-packaging (24.1-1) ...
126s Setting up python3-dill (0.3.9-1) ...
126s Setting up liblzf1:arm64 (3.6-4) ...
126s Setting up python3-greenlet (3.0.3-0ubuntu6) ...
127s Setting up python3-setproctitle:arm64 (1.3.3-1build2) ...
127s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
127s Setting up python3-pluggy (1.5.0-1) ...
127s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ...
127s Setting up python3.13-minimal (3.13.0-2) ...
128s Setting up python3-dateutil (2.9.0-2) ...
128s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ...
128s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g'
128s   string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string)
129s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g'
129s   string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string)
129s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
129s Setting up python3-tzlocal (5.2-1.1) ...
129s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
129s Setting up python3-tomlkit (0.13.2-1) ...
129s Setting up node-normalize.css (8.0.1-5) ...
129s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
129s Setting up libssw0:arm64 (1.1-15) ...
129s Setting up python3-globus-sdk (3.46.0-1) ...
130s Setting up libsz2:arm64 (1.1.3-1) ...
130s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
130s Setting up liblapack3:arm64 (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
130s Setting up libopenblas0-pthread:arm64 (0.3.28+ds-3) ...
130s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
130s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
130s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode
130s Setting up libzmq5:arm64 (4.3.5-1build2) ...
130s Setting up python3-ijson (3.3.0-1) ...
130s Setting up python3.13 (3.13.0-2) ...
131s Setting up python3-pytest (8.3.3-1) ...
132s Setting up python3-all (3.12.7-1) ...
132s Setting up python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ...
135s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
135s Setting up python3-werkzeug (3.0.4-1ubuntu1) ...
135s Setting up python3-zmq (24.0.1-5build1) ...
136s Setting up libjs-jquery-metadata (12-4) ...
136s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ...
136s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
140s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ...
140s Setting up python3-hdmedians (0.14.2-5.1build1) ...
140s Setting up libopenblas0:arm64 (0.3.28+ds-3) ...
140s Setting up python3-lxml:arm64 (5.3.0-1) ...
140s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
140s Setting up python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ...
140s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
140s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
140s Setting up python3-scipy (1.13.1-5) ...
148s Setting up python3-flask (3.0.3-1ubuntu1) ...
148s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
148s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
149s Setting up python3-pytest-cov (5.0.0-1) ...
149s Setting up python3-patsy (0.5.6-1) ...
149s Setting up python3-pandas (2.2.3+dfsg-5) ...
161s Setting up python3-h5py (3.11.0-5ubuntu1) ...
161s Setting up python3-statsmodels (0.14.4+dfsg-1) ...
167s Setting up python3-flask-sqlalchemy (3.1.1-2) ...
168s Setting up q2templates (2024.5.0+ds-1) ...
168s Setting up python3-parsl (2024.11.04+ds-1) ...
169s Setting up qiime (2024.5.0-1ubuntu2) ...
170s Setting up python3-biom-format (2.1.16-1) ...
170s Setting up python3-skbio (0.6.2-3) ...
172s Setting up q2-types (2024.5.0-1ubuntu2) ...
172s Setting up python3-emperor (1.0.3+ds-9.1) ...
173s Setting up q2-emperor (2024.5.0-2) ...
173s Setting up autopkgtest-satdep (0) ...
173s Processing triggers for systemd (256.5-2ubuntu4) ...
173s Processing triggers for man-db (2.12.1-3) ...
173s Processing triggers for libc-bin (2.40-1ubuntu3) ...
180s (Reading database ... 97290 files and directories currently installed.)
180s Removing autopkgtest-satdep (0) ...
181s autopkgtest [11:07:33]: test run-unit-test: [-----------------------
181s ============================= test session starts ==============================
181s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
181s cachedir: .pytest_cache
181s rootdir: /tmp/autopkgtest.ligt3l/autopkgtest_tmp
181s plugins: cov-5.0.0, typeguard-4.4.1
182s collecting ... collected 0 items / 2 errors
182s 
182s ==================================== ERRORS ====================================
182s ________________ ERROR collecting q2_emperor/tests/test_plot.py ________________
182s ImportError while importing test module '/tmp/autopkgtest.ligt3l/autopkgtest_tmp/q2_emperor/tests/test_plot.py'.
182s Hint: make sure your test modules/packages have valid Python names.
182s Traceback:
182s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
182s     return _bootstrap._gcd_import(name[level:], package, level)
182s q2_emperor/__init__.py:9: in <module>
182s     from ._plot import plot, procrustes_plot, biplot, generic_plot
182s q2_emperor/_plot.py:12: in <module>
182s     import qiime2
182s /usr/lib/python3/dist-packages/qiime2/__init__.py:9: in <module>
182s     from qiime2.sdk import Artifact, Visualization, ResultCollection
182s /usr/lib/python3/dist-packages/qiime2/sdk/__init__.py:9: in <module>
182s     from .context import Context
182s /usr/lib/python3/dist-packages/qiime2/sdk/context.py:9: in <module>
182s     from qiime2.core.type.util import is_collection_type
182s /usr/lib/python3/dist-packages/qiime2/core/type/__init__.py:10: in <module>
182s     from .semantic import SemanticType, Properties
182s /usr/lib/python3/dist-packages/qiime2/core/type/semantic.py:15: in <module>
182s     from qiime2.core.type.util import is_semantic_type, is_qiime_type
182s /usr/lib/python3/dist-packages/qiime2/core/type/util.py:13: in <module>
182s     from qiime2.core.type.primitive import Int, Float, Bool, Str, Jobs, Threads
182s /usr/lib/python3/dist-packages/qiime2/core/type/primitive.py:13: in <module>
182s     import qiime2.metadata as metadata
182s /usr/lib/python3/dist-packages/qiime2/metadata/__init__.py:9: in <module>
182s     from .metadata import (Metadata, MetadataColumn, NumericMetadataColumn,
182s /usr/lib/python3/dist-packages/qiime2/metadata/metadata.py:16: in <module>
182s     import pandas as pd
182s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
182s     raise ImportError(
182s E   ImportError: Unable to import required dependencies:
182s E   numpy: Error importing numpy: you should not try to import numpy from
182s E           its source directory; please exit the numpy source tree, and relaunch
182s E           your python interpreter from there.
182s ____________ ERROR collecting q2_emperor/tests/test_plugin_setup.py ____________
182s ImportError while importing test module '/tmp/autopkgtest.ligt3l/autopkgtest_tmp/q2_emperor/tests/test_plugin_setup.py'.
182s Hint: make sure your test modules/packages have valid Python names.
182s Traceback:
182s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
182s     return _bootstrap._gcd_import(name[level:], package, level)
182s q2_emperor/__init__.py:9: in <module>
182s     from ._plot import plot, procrustes_plot, biplot, generic_plot
182s q2_emperor/_plot.py:12: in <module>
182s     import qiime2
182s /usr/lib/python3/dist-packages/qiime2/__init__.py:9: in <module>
182s     from qiime2.sdk import Artifact, Visualization, ResultCollection
182s /usr/lib/python3/dist-packages/qiime2/sdk/__init__.py:9: in <module>
182s     from .context import Context
182s /usr/lib/python3/dist-packages/qiime2/sdk/context.py:9: in <module>
182s     from qiime2.core.type.util import is_collection_type
182s /usr/lib/python3/dist-packages/qiime2/core/type/__init__.py:10: in <module>
182s     from .semantic import SemanticType, Properties
182s /usr/lib/python3/dist-packages/qiime2/core/type/semantic.py:15: in <module>
182s     from qiime2.core.type.util import is_semantic_type, is_qiime_type
182s /usr/lib/python3/dist-packages/qiime2/core/type/util.py:13: in <module>
182s     from qiime2.core.type.primitive import Int, Float, Bool, Str, Jobs, Threads
182s /usr/lib/python3/dist-packages/qiime2/core/type/primitive.py:13: in <module>
182s     import qiime2.metadata as metadata
182s /usr/lib/python3/dist-packages/qiime2/metadata/__init__.py:9: in <module>
182s     from .metadata import (Metadata, MetadataColumn, NumericMetadataColumn,
182s /usr/lib/python3/dist-packages/qiime2/metadata/metadata.py:16: in <module>
182s     import pandas as pd
182s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
182s     raise ImportError(
182s E   ImportError: Unable to import required dependencies:
182s E   numpy: Error importing numpy: you should not try to import numpy from
182s E           its source directory; please exit the numpy source tree, and relaunch
182s E           your python interpreter from there.
182s =============================== warnings summary ===============================
182s q2_emperor/_plot.py:10
182s   /tmp/autopkgtest.ligt3l/autopkgtest_tmp/q2_emperor/_plot.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
182s     import pkg_resources
182s 
182s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
182s 
182s ---------- coverage: platform linux, python 3.13.0-final-0 -----------
182s Name                                    Stmts   Miss  Cover
182s -----------------------------------------------------------
182s q2_emperor/__init__.py                      5      4    20%
182s q2_emperor/_examples.py                    14     14     0%
182s q2_emperor/_plot.py                        61     58     5%
182s q2_emperor/_version.py                      4      4     0%
182s q2_emperor/plugin_setup.py                 12     12     0%
182s q2_emperor/tests/__init__.py                0      0   100%
182s q2_emperor/tests/test_plot.py              91     91     0%
182s q2_emperor/tests/test_plugin_setup.py       5      5     0%
182s -----------------------------------------------------------
182s TOTAL                                     192    188     2%
182s 
182s =========================== short test summary info ============================
182s ERROR q2_emperor/tests/test_plot.py
182s ERROR q2_emperor/tests/test_plugin_setup.py
182s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!!
182s ========================= 1 warning, 2 errors in 1.21s =========================
183s autopkgtest [11:07:35]: test run-unit-test: -----------------------]
183s autopkgtest [11:07:35]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
183s run-unit-test        FAIL non-zero exit status 2
184s autopkgtest [11:07:36]: @@@@@@@@@@@@@@@@@@@@ summary
184s run-unit-test        FAIL non-zero exit status 2
190s nova [W] Skipping flock in bos03-arm64
190s Creating nova instance adt-plucky-arm64-q2-emperor-20241113-110432-juju-7f2275-prod-proposed-migration-environment-20-c96ee239-8d0d-4b03-9a35-bff6c8812d65 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...