0s autopkgtest [10:59:06]: starting date and time: 2024-11-13 10:59:06+0000
  0s autopkgtest [10:59:06]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time
  0s autopkgtest [10:59:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1o0a4k82/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-trx-python --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-53.secgroup --name adt-plucky-arm64-python-trx-python-20241113-105906-juju-7f2275-prod-proposed-migration-environment-2-835f44a8-0d8a-46ea-84f3-b81f683b79c0 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 90s autopkgtest [11:00:36]: testbed dpkg architecture: arm64
 90s autopkgtest [11:00:36]: testbed apt version: 2.9.8
 90s autopkgtest [11:00:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 91s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 91s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 91s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 91s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 91s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 91s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
 91s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 91s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
 91s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
 92s Fetched 1794 kB in 1s (2182 kB/s)
 92s Reading package lists...
 94s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 95s Calculating upgrade...
 95s The following NEW packages will be installed:
 95s   python3.13-gdbm
 95s The following packages will be upgraded:
 95s   libpython3-stdlib python3 python3-gdbm python3-minimal
 96s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 96s Need to get 101 kB of archives.
 96s After this operation, 141 kB of additional disk space will be used.
 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
 96s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
 96s Fetched 101 kB in 0s (282 kB/s)
 96s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
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(Reading database ... 30%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 97s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
 97s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 97s Setting up python3-minimal (3.12.7-1) ...
 97s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 25%
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 97s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
 97s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 97s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
 97s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 97s Selecting previously unselected package python3.13-gdbm.
 97s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
 97s Unpacking python3.13-gdbm (3.13.0-2) ...
 97s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
 97s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 97s Setting up python3.13-gdbm (3.13.0-2) ...
 97s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
 97s Setting up python3 (3.12.7-1) ...
 97s Setting up python3-gdbm:arm64 (3.12.7-1) ...
 97s Processing triggers for man-db (2.12.1-3) ...
 98s Reading package lists...
 98s Building dependency tree...
 98s Reading state information...
 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 99s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 99s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
100s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
100s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
101s Reading package lists...
101s Reading package lists...
101s Building dependency tree...
101s Reading state information...
101s Calculating upgrade...
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
107s autopkgtest [11:00:53]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
107s autopkgtest [11:00:53]: @@@@@@@@@@@@@@@@@@@@ apt-source python-trx-python
109s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-trx-python 0.3-1 (dsc) [2465 B]
109s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-trx-python 0.3-1 (tar) [75.6 kB]
109s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-trx-python 0.3-1 (diff) [4472 B]
110s gpgv: Signature made Mon Jul  1 19:34:19 2024 UTC
110s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
110s gpgv:                issuer "emollier@debian.org"
110s gpgv: Can't check signature: No public key
110s dpkg-source: warning: cannot verify inline signature for ./python-trx-python_0.3-1.dsc: no acceptable signature found
110s autopkgtest [11:00:56]: testing package python-trx-python version 0.3-1
111s autopkgtest [11:00:57]: build not needed
112s autopkgtest [11:00:58]: test pybuild-autopkgtest: preparing testbed
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
114s Starting pkgProblemResolver with broken count: 0
115s Starting 2 pkgProblemResolver with broken count: 0
115s Done
115s The following additional packages will be installed:
115s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
115s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit
115s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
115s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
115s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext help2man
115s   intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0
115s   libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev
115s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23
115s   libitm1 liblapack3 liblbfgsb0 liblsan0 liblzf1 libmpc3 libpython3.13-minimal
115s   libpython3.13-stdlib libstdc++-14-dev libsz2 libtool libtsan2 libubsan1 m4
115s   po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all
115s   python3-build python3-decorator python3-deepdiff python3-dipy
115s   python3-dipy-lib python3-h5py python3-h5py-serial python3-iniconfig
115s   python3-installer python3-jsonpickle python3-nibabel python3-numpy
115s   python3-ordered-set python3-packaging python3-pluggy python3-psutil
115s   python3-pyproject-hooks python3-pytest python3-scipy python3-setuptools-scm
115s   python3-toml python3-tqdm python3-trx-python python3-wheel python3.13
115s   python3.13-minimal
115s Suggested packages:
115s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
115s   cpp-14-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex bison gdb
115s   gcc-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
115s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
115s   libmail-box-perl python3-pip python3-venv python-build-doc python3-boto3
115s   python-dipy-doc python-h5py-doc python-installer-doc python-jsonpickle-doc
115s   python3-simplejson python-nibabel-doc gfortran python-numpy-doc python3-dev
115s   python-scipy-doc python3.13-venv python3.13-doc binfmt-support
115s Recommended packages:
115s   libarchive-cpio-perl libltdl-dev libmail-sendmail-perl python3-clevercsv
115s   python3-matplotlib python3-vtk9 python3-tables python3-sklearn
115s   python3-pandas python3-pydicom python3-fuse python3-pil
115s The following NEW packages will be installed:
115s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
115s   cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
115s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
115s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
115s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext help2man
115s   intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0
115s   libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev
115s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23
115s   libitm1 liblapack3 liblbfgsb0 liblsan0 liblzf1 libmpc3 libpython3.13-minimal
115s   libpython3.13-stdlib libstdc++-14-dev libsz2 libtool libtsan2 libubsan1 m4
115s   po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all
115s   python3-build python3-decorator python3-deepdiff python3-dipy
115s   python3-dipy-lib python3-h5py python3-h5py-serial python3-iniconfig
115s   python3-installer python3-jsonpickle python3-nibabel python3-numpy
115s   python3-ordered-set python3-packaging python3-pluggy python3-psutil
115s   python3-pyproject-hooks python3-pytest python3-scipy python3-setuptools-scm
115s   python3-toml python3-tqdm python3-trx-python python3-wheel python3.13
115s   python3.13-minimal
115s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded.
115s Need to get 105 MB/105 MB of archives.
115s After this operation, 386 MB of additional disk space will be used.
115s Get:1 /tmp/autopkgtest.52Pygt/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [836 B]
116s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
116s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
116s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
116s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB]
116s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
116s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
117s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB]
117s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
117s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
117s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
118s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
118s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
118s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
118s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
118s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
118s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
118s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
118s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
118s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
118s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
118s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
118s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
118s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
119s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
119s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
119s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
119s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
119s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
119s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
119s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
119s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
119s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
119s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
119s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB]
119s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
119s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
119s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
119s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
119s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB]
119s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
119s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB]
119s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
119s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
119s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB]
119s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB]
119s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 help2man arm64 1.49.3 [201 kB]
119s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
119s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
120s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
120s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
120s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
120s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
120s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
120s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
120s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
120s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
120s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
120s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
120s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
120s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB]
120s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB]
120s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB]
120s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
120s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B]
120s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
120s Get:67 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
120s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
120s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jsonpickle all 3.4.2+dfsg-1 [39.9 kB]
120s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
120s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ordered-set all 4.1.0-1 [9778 B]
120s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-deepdiff all 6.7.1-2 [62.8 kB]
120s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB]
120s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
120s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
120s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nibabel all 5.2.1-2 [2696 kB]
120s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tqdm all 4.67.0-1 [91.6 kB]
120s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-setuptools-scm all 8.1.0-1 [32.2 kB]
120s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-trx-python all 0.3-1 [40.8 kB]
120s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dipy-lib arm64 1.9.0-8 [2353 kB]
120s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dipy all 1.9.0-8 [3521 kB]
120s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
120s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
120s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB]
120s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
121s Fetched 105 MB in 5s (20.9 MB/s)
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145s Setting up python3-dipy-lib:arm64 (1.9.0-8) ...
145s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
145s Setting up python3-nibabel (5.2.1-2) ...
147s Setting up python3-h5py (3.11.0-5ubuntu1) ...
147s Setting up cpp-14 (14.2.0-8ubuntu1) ...
147s Setting up cpp (4:14.1.0-2ubuntu1) ...
147s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
147s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
147s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
147s Setting up python3-trx-python (0.3-1) ...
147s Setting up python3-dipy (1.9.0-8) ...
149s Setting up gcc-14 (14.2.0-8ubuntu1) ...
149s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
149s Setting up g++-14 (14.2.0-8ubuntu1) ...
149s Setting up libtool (2.4.7-7build1) ...
149s Setting up gcc (4:14.1.0-2ubuntu1) ...
149s Setting up dh-autoreconf (20) ...
149s Setting up g++ (4:14.1.0-2ubuntu1) ...
149s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
149s Setting up build-essential (12.10ubuntu1) ...
149s Setting up debhelper (13.20ubuntu1) ...
149s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
149s Setting up autopkgtest-satdep (0) ...
149s Processing triggers for systemd (256.5-2ubuntu4) ...
149s Processing triggers for man-db (2.12.1-3) ...
150s Processing triggers for install-info (7.1.1-1) ...
150s Processing triggers for libc-bin (2.40-1ubuntu3) ...
155s (Reading database ... 87110 files and directories currently installed.)
155s Removing autopkgtest-satdep (0) ...
156s autopkgtest [11:01:42]: test pybuild-autopkgtest: pybuild-autopkgtest
156s autopkgtest [11:01:42]: test pybuild-autopkgtest: [-----------------------
156s # Pull test items that are otherwise uncaught by pybuild-autodep8.
156s cp -r /usr/lib/python3/dist-packages/trx/tests \
156s 	../../autopkgtest_tmp/build
156s pybuild-autopkgtest
157s I: pybuild base:311: cd /tmp/autopkgtest.52Pygt/autopkgtest_tmp/build; python3.13 -m pytest 
157s ============================= test session starts ==============================
157s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
157s rootdir: /tmp/autopkgtest.52Pygt/autopkgtest_tmp/build
157s configfile: pyproject.toml
157s plugins: typeguard-4.4.1
157s collected 0 items / 3 errors
157s 
157s ==================================== ERRORS ====================================
157s _________________________ ERROR collecting test_io.py __________________________
157s ImportError while importing test module '/tmp/autopkgtest.52Pygt/autopkgtest_tmp/build/test_io.py'.
157s Hint: make sure your test modules/packages have valid Python names.
157s Traceback:
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
157s     from . import multiarray
157s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
157s     from . import overrides
157s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
157s     from numpy.core._multiarray_umath import (
157s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
157s 
157s During handling of the above exception, another exception occurred:
157s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
157s     from numpy.__config__ import show as show_config
157s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
157s     from numpy.core._multiarray_umath import (
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
157s     raise ImportError(msg)
157s E   ImportError: 
157s E   
157s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
157s E   
157s E   Importing the numpy C-extensions failed. This error can happen for
157s E   many reasons, often due to issues with your setup or how NumPy was
157s E   installed.
157s E   
157s E   We have compiled some common reasons and troubleshooting tips at:
157s E   
157s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
157s E   
157s E   Please note and check the following:
157s E   
157s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
157s E     * The NumPy version is: "1.26.4"
157s E   
157s E   and make sure that they are the versions you expect.
157s E   Please carefully study the documentation linked above for further help.
157s E   
157s E   Original error was: No module named 'numpy.core._multiarray_umath'
157s 
157s The above exception was the direct cause of the following exception:
157s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
157s     return _bootstrap._gcd_import(name[level:], package, level)
157s test_io.py:10: in <module>
157s     import numpy as np
157s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
157s     raise ImportError(msg) from e
157s E   ImportError: Error importing numpy: you should not try to import numpy from
157s E           its source directory; please exit the numpy source tree, and relaunch
157s E           your python interpreter from there.
157s _______________________ ERROR collecting test_memmap.py ________________________
157s ImportError while importing test module '/tmp/autopkgtest.52Pygt/autopkgtest_tmp/build/test_memmap.py'.
157s Hint: make sure your test modules/packages have valid Python names.
157s Traceback:
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
157s     from . import multiarray
157s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
157s     from . import overrides
157s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
157s     from numpy.core._multiarray_umath import (
157s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
157s 
157s During handling of the above exception, another exception occurred:
157s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
157s     from numpy.__config__ import show as show_config
157s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
157s     from numpy.core._multiarray_umath import (
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
157s     raise ImportError(msg)
157s E   ImportError: 
157s E   
157s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
157s E   
157s E   Importing the numpy C-extensions failed. This error can happen for
157s E   many reasons, often due to issues with your setup or how NumPy was
157s E   installed.
157s E   
157s E   We have compiled some common reasons and troubleshooting tips at:
157s E   
157s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
157s E   
157s E   Please note and check the following:
157s E   
157s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
157s E     * The NumPy version is: "1.26.4"
157s E   
157s E   and make sure that they are the versions you expect.
157s E   Please carefully study the documentation linked above for further help.
157s E   
157s E   Original error was: No module named 'numpy.core._multiarray_umath'
157s 
157s The above exception was the direct cause of the following exception:
157s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
157s     return _bootstrap._gcd_import(name[level:], package, level)
157s test_memmap.py:5: in <module>
157s     from nibabel.streamlines.tests.test_tractogram import make_dummy_streamline
157s /usr/lib/python3/dist-packages/nibabel/__init__.py:41: in <module>
157s     from . import analyze as ana
157s /usr/lib/python3/dist-packages/nibabel/analyze.py:86: in <module>
157s     import numpy as np
157s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
157s     raise ImportError(msg) from e
157s E   ImportError: Error importing numpy: you should not try to import numpy from
157s E           its source directory; please exit the numpy source tree, and relaunch
157s E           your python interpreter from there.
157s ___________________ ERROR collecting test_streamlines_ops.py ___________________
157s ImportError while importing test module '/tmp/autopkgtest.52Pygt/autopkgtest_tmp/build/test_streamlines_ops.py'.
157s Hint: make sure your test modules/packages have valid Python names.
157s Traceback:
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
157s     from . import multiarray
157s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
157s     from . import overrides
157s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
157s     from numpy.core._multiarray_umath import (
157s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
157s 
157s During handling of the above exception, another exception occurred:
157s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
157s     from numpy.__config__ import show as show_config
157s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
157s     from numpy.core._multiarray_umath import (
157s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
157s     raise ImportError(msg)
157s E   ImportError: 
157s E   
157s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
157s E   
157s E   Importing the numpy C-extensions failed. This error can happen for
157s E   many reasons, often due to issues with your setup or how NumPy was
157s E   installed.
157s E   
157s E   We have compiled some common reasons and troubleshooting tips at:
157s E   
157s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
157s E   
157s E   Please note and check the following:
157s E   
157s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
157s E     * The NumPy version is: "1.26.4"
157s E   
157s E   and make sure that they are the versions you expect.
157s E   Please carefully study the documentation linked above for further help.
157s E   
157s E   Original error was: No module named 'numpy.core._multiarray_umath'
157s 
157s The above exception was the direct cause of the following exception:
157s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
157s     return _bootstrap._gcd_import(name[level:], package, level)
157s test_streamlines_ops.py:3: in <module>
157s     import numpy as np
157s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
157s     raise ImportError(msg) from e
157s E   ImportError: Error importing numpy: you should not try to import numpy from
157s E           its source directory; please exit the numpy source tree, and relaunch
157s E           your python interpreter from there.
157s =========================== short test summary info ============================
157s ERROR test_io.py
157s ERROR test_memmap.py
157s ERROR test_streamlines_ops.py
157s !!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection !!!!!!!!!!!!!!!!!!!!
157s ============================== 3 errors in 0.27s ===============================
157s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.52Pygt/autopkgtest_tmp/build; python3.13 -m pytest 
157s I: pybuild base:311: cd /tmp/autopkgtest.52Pygt/autopkgtest_tmp/build; python3.12 -m pytest 
158s ============================= test session starts ==============================
158s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
158s rootdir: /tmp/autopkgtest.52Pygt/autopkgtest_tmp/build
158s configfile: pyproject.toml
158s plugins: typeguard-4.4.1
158s collected 106 items
158s 
158s test_io.py sssssssssssssssssssssss                                       [ 21%]
158s test_memmap.py .........x...x.............ssssssssssssssssss............ [ 75%]
158s ..                                                                       [ 77%]
158s test_streamlines_ops.py ........................                         [100%]
158s 
158s =============================== warnings summary ===============================
158s ../../../../usr/lib/python3/dist-packages/nibabel/testing/__init__.py:29
158s   /usr/lib/python3/dist-packages/nibabel/testing/__init__.py:29: DeprecationWarning: 'importlib.abc.Traversable' is deprecated and slated for removal in Python 3.14
158s     from importlib.abc import Traversable
158s 
158s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
158s ============= 63 passed, 41 skipped, 2 xfailed, 1 warning in 0.84s =============
159s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
159s make: *** [/tmp/rB3tX_YPDd/run:4: pybuild-autopkgtest] Error 25
159s pybuild-autopkgtest: error: /tmp/rB3tX_YPDd/run pybuild-autopkgtest returned exit code 2
159s autopkgtest [11:01:45]: test pybuild-autopkgtest: -----------------------]
160s pybuild-autopkgtest  FAIL non-zero exit status 25
160s autopkgtest [11:01:46]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
160s autopkgtest [11:01:46]: @@@@@@@@@@@@@@@@@@@@ summary
160s pybuild-autopkgtest  FAIL non-zero exit status 25
183s virt: nova [W] Skipping flock in bos03-arm64
183s virt: Creating nova instance adt-plucky-arm64-python-trx-python-20241113-105906-juju-7f2275-prod-proposed-migration-environment-2-835f44a8-0d8a-46ea-84f3-b81f683b79c0 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...