0s autopkgtest [10:56:20]: starting date and time: 2024-11-13 10:56:20+0000
  0s autopkgtest [10:56:20]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [10:56:20]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6sb4gg7v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-sqt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-39.secgroup --name adt-plucky-arm64-python-sqt-20241113-105620-juju-7f2275-prod-proposed-migration-environment-20-5db6387d-6ab0-4a3a-ae02-8bb7a2f0e2f5 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 71s autopkgtest [10:57:31]: testbed dpkg architecture: arm64
 71s autopkgtest [10:57:31]: testbed apt version: 2.9.8
 71s autopkgtest [10:57:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 73s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 73s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 73s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 73s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 73s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
 73s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 73s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
 73s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
 73s Fetched 1794 kB in 1s (1909 kB/s)
 73s Reading package lists...
 76s Reading package lists...
 76s Building dependency tree...
 76s Reading state information...
 77s Calculating upgrade...
 77s The following NEW packages will be installed:
 77s   python3.13-gdbm
 77s The following packages will be upgraded:
 77s   libpython3-stdlib python3 python3-gdbm python3-minimal
 78s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 101 kB of archives.
 78s After this operation, 141 kB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
 78s Fetched 101 kB in 0s (287 kB/s)
 79s (Reading database ... 
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(Reading database ... 15%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 79s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
 79s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Setting up python3-minimal (3.12.7-1) ...
 79s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 79s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
 79s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
 79s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Selecting previously unselected package python3.13-gdbm.
 79s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
 79s Unpacking python3.13-gdbm (3.13.0-2) ...
 79s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
 79s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 79s Setting up python3.13-gdbm (3.13.0-2) ...
 79s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
 79s Setting up python3 (3.12.7-1) ...
 80s Setting up python3-gdbm:arm64 (3.12.7-1) ...
 80s Processing triggers for man-db (2.12.1-3) ...
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 82s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 82s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 84s Reading package lists...
 84s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 85s Calculating upgrade...
 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 85s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s autopkgtest [10:57:49]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 89s autopkgtest [10:57:49]: @@@@@@@@@@@@@@@@@@@@ apt-source python-sqt
 91s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (dsc) [2199 B]
 91s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (tar) [116 kB]
 91s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-sqt 0.8.0-8build1 (diff) [7048 B]
 91s gpgv: Signature made Wed Apr 10 17:14:42 2024 UTC
 91s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
 91s gpgv: Can't check signature: No public key
 91s dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8build1.dsc: no acceptable signature found
 91s autopkgtest [10:57:51]: testing package python-sqt version 0.8.0-8build1
 92s autopkgtest [10:57:52]: build not needed
 92s autopkgtest [10:57:52]: test pybuild-autopkgtest: preparing testbed
 94s Reading package lists...
 94s Building dependency tree...
 94s Reading state information...
 95s Starting pkgProblemResolver with broken count: 0
 95s Starting 2 pkgProblemResolver with broken count: 0
 95s Done
 96s The following additional packages will be installed:
 96s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
 96s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit
 96s   dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config
 96s   fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
 96s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
 96s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
 96s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0
 96s   libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libgcc-14-dev
 96s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2
 96s   libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
 96s   libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3
 96s   liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7
 96s   libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13
 96s   libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0
 96s   libraqm0 libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 libtk8.6 libtool
 96s   libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1
 96s   libxslt1.1 libxss1 m4 pigz po-debconf pybuild-plugin-autopkgtest
 96s   python-matplotlib-data python3-all python3-all-dev python3-appdirs
 96s   python3-brotli python3-contourpy python3-cutadapt python3-cycler
 96s   python3-dateutil python3-decorator python3-dev python3-dnaio
 96s   python3-fonttools python3-fs python3-iniconfig python3-kiwisolver
 96s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
 96s   python3-packaging python3-pandas python3-pandas-lib python3-pil
 96s   python3-pil.imagetk python3-pluggy python3-pysam python3-pytest
 96s   python3-scipy python3-seaborn python3-six python3-sqt python3-sympy
 96s   python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-xopen
 96s   python3.12-dev python3.12-tk python3.13 python3.13-dev python3.13-minimal
 96s   python3.13-tk tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
 96s Suggested packages:
 96s   autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales
 96s   cpp-14-doc cython-doc dh-make flit python3-build python3-installer
 96s   python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
 96s   gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
 96s   libjs-jquery-ui-docs liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6
 96s   libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
 96s   python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
 96s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
 96s   python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject
 96s   python3-pyqt5 python3-sip python3-tornado texlive-extra-utils
 96s   texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran
 96s   python-numpy-doc python-pandas-doc python3-statsmodels python-pil-doc
 96s   python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg
 96s   python3.13-venv python3.13-doc binfmt-support
 96s Recommended packages:
 96s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
 96s   python3-bs4 python3-cssselect python3-html5lib python3-bottleneck
 96s   python3-numexpr python3-odf python3-openpyxl python3-tables python3-olefile
 96s   fonts-noto-color-emoji isympy-common
 96s The following NEW packages will be installed:
 96s   autoconf automake autopkgtest-satdep autopoint autotools-dev blt
 96s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
 96s   cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism
 96s   dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++
 96s   g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
 96s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
 96s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0
 96s   libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libgcc-14-dev
 96s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2
 96s   libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
 96s   libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3
 96s   liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7
 96s   libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13
 96s   libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0
 96s   libraqm0 libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 libtk8.6 libtool
 96s   libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1
 96s   libxslt1.1 libxss1 m4 pigz po-debconf pybuild-plugin-autopkgtest
 96s   python-matplotlib-data python3-all python3-all-dev python3-appdirs
 96s   python3-brotli python3-contourpy python3-cutadapt python3-cycler
 96s   python3-dateutil python3-decorator python3-dev python3-dnaio
 96s   python3-fonttools python3-fs python3-iniconfig python3-kiwisolver
 96s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
 96s   python3-packaging python3-pandas python3-pandas-lib python3-pil
 96s   python3-pil.imagetk python3-pluggy python3-pysam python3-pytest
 96s   python3-scipy python3-seaborn python3-six python3-sqt python3-sympy
 96s   python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-xopen
 96s   python3.12-dev python3.12-tk python3.13 python3.13-dev python3.13-minimal
 96s   python3.13-tk tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
 96s 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded.
 96s Need to get 156 MB/156 MB of archives.
 96s After this operation, 637 MB of additional disk space will be used.
 96s Get:1 /tmp/autopkgtest.qSMN2G/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [820 B]
 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
 96s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 pigz arm64 2.8-1 [60.7 kB]
 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
 96s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB]
 96s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
 96s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
 97s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB]
 97s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB]
 97s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
 97s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
 97s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
 97s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
 97s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
 97s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
 97s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 97s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
 97s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB]
 97s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB]
 97s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B]
 97s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
 97s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
 97s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
 97s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
 97s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
 97s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
 97s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
 97s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
 97s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
 97s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
 97s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
 97s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
 97s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
 97s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
 97s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
 97s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
 98s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
 98s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
 98s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
 98s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
 98s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
 98s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
 98s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
 98s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
 98s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
 98s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu1 [2355 kB]
 98s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
 98s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB]
 98s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
 98s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
 98s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
 98s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
 98s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB]
 98s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
 98s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB]
 98s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
 98s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
 98s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB]
 98s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB]
 98s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB]
 98s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
 98s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB]
 98s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB]
 98s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
 98s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
 98s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB]
 98s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB]
 98s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.20+ds-1 [431 kB]
 98s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
 98s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB]
 98s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
 98s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 98s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 99s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
 99s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
 99s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
 99s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
 99s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
 99s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB]
 99s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
 99s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB]
 99s Get:83 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB]
 99s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
 99s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB]
 99s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB]
 99s Get:87 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B]
 99s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
 99s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB]
 99s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB]
 99s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
 99s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB]
 99s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
 99s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB]
 99s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB]
 99s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB]
 99s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
 99s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB]
 99s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
 99s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
 99s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB]
 99s Get:102 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB]
 99s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB]
100s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B]
100s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
100s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB]
100s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
100s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB]
100s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-xopen all 1.7.0-2 [17.0 kB]
100s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dnaio arm64 1.2.2-1 [79.0 kB]
100s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cutadapt arm64 4.7-2 [181 kB]
100s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
100s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
100s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
100s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
100s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
101s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
101s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
101s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB]
101s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
101s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB]
101s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB]
101s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB]
101s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB]
101s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
101s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB]
102s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
102s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB]
102s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB]
102s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB]
102s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB]
102s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB]
102s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B]
102s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B]
102s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
102s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB]
102s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB]
102s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
102s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
102s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.22.1+ds-2 [3412 kB]
102s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
102s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-seaborn all 0.13.2-4 [225 kB]
102s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sqt arm64 0.8.0-8build1 [134 kB]
103s Fetched 156 MB in 6s (24.0 MB/s)
103s Selecting previously unselected package libpython3.13-minimal:arm64.
103s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
103s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ...
103s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
103s Selecting previously unselected package python3.13-minimal.
103s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ...
103s Unpacking python3.13-minimal (3.13.0-2) ...
103s Selecting previously unselected package pigz.
103s Preparing to unpack .../002-pigz_2.8-1_arm64.deb ...
103s Unpacking pigz (2.8-1) ...
103s Selecting previously unselected package m4.
103s Preparing to unpack .../003-m4_1.4.19-4build1_arm64.deb ...
103s Unpacking m4 (1.4.19-4build1) ...
103s Selecting previously unselected package autoconf.
103s Preparing to unpack .../004-autoconf_2.72-3_all.deb ...
103s Unpacking autoconf (2.72-3) ...
103s Selecting previously unselected package autotools-dev.
103s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ...
103s Unpacking autotools-dev (20220109.1) ...
103s Selecting previously unselected package automake.
103s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
103s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
103s Selecting previously unselected package autopoint.
103s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ...
103s Unpacking autopoint (0.22.5-2) ...
103s Selecting previously unselected package libtcl8.6:arm64.
103s Preparing to unpack .../008-libtcl8.6_8.6.15+dfsg-2_arm64.deb ...
103s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ...
103s Selecting previously unselected package fonts-dejavu-mono.
103s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ...
103s Unpacking fonts-dejavu-mono (2.37-8) ...
103s Selecting previously unselected package fonts-dejavu-core.
103s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ...
103s Unpacking fonts-dejavu-core (2.37-8) ...
104s Selecting previously unselected package fontconfig-config.
104s Preparing to unpack .../011-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
104s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
104s Selecting previously unselected package libfontconfig1:arm64.
104s Preparing to unpack .../012-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
104s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
104s Selecting previously unselected package libxrender1:arm64.
104s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
104s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
104s Selecting previously unselected package libxft2:arm64.
104s Preparing to unpack .../014-libxft2_2.3.6-1build1_arm64.deb ...
104s Unpacking libxft2:arm64 (2.3.6-1build1) ...
104s Selecting previously unselected package x11-common.
104s Preparing to unpack .../015-x11-common_1%3a7.7+23ubuntu3_all.deb ...
104s Unpacking x11-common (1:7.7+23ubuntu3) ...
104s Selecting previously unselected package libxss1:arm64.
104s Preparing to unpack .../016-libxss1_1%3a1.2.3-1build3_arm64.deb ...
104s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
104s Selecting previously unselected package libtk8.6:arm64.
104s Preparing to unpack .../017-libtk8.6_8.6.15-1_arm64.deb ...
104s Unpacking libtk8.6:arm64 (8.6.15-1) ...
104s Selecting previously unselected package tk8.6-blt2.5.
104s Preparing to unpack .../018-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ...
104s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
104s Selecting previously unselected package blt.
104s Preparing to unpack .../019-blt_2.5.3+dfsg-7build1_arm64.deb ...
104s Unpacking blt (2.5.3+dfsg-7build1) ...
104s Selecting previously unselected package libisl23:arm64.
104s Preparing to unpack .../020-libisl23_0.27-1_arm64.deb ...
104s Unpacking libisl23:arm64 (0.27-1) ...
104s Selecting previously unselected package libmpc3:arm64.
104s Preparing to unpack .../021-libmpc3_1.3.1-1build2_arm64.deb ...
104s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
104s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
104s Preparing to unpack .../022-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
104s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package cpp-14.
105s Preparing to unpack .../023-cpp-14_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package cpp-aarch64-linux-gnu.
105s Preparing to unpack .../024-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
105s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
105s Selecting previously unselected package cpp.
105s Preparing to unpack .../025-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
105s Unpacking cpp (4:14.1.0-2ubuntu1) ...
105s Selecting previously unselected package libcc1-0:arm64.
105s Preparing to unpack .../026-libcc1-0_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libgomp1:arm64.
105s Preparing to unpack .../027-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libitm1:arm64.
105s Preparing to unpack .../028-libitm1_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libasan8:arm64.
105s Preparing to unpack .../029-libasan8_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package liblsan0:arm64.
105s Preparing to unpack .../030-liblsan0_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libtsan2:arm64.
105s Preparing to unpack .../031-libtsan2_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libubsan1:arm64.
105s Preparing to unpack .../032-libubsan1_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libhwasan0:arm64.
105s Preparing to unpack .../033-libhwasan0_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package libgcc-14-dev:arm64.
105s Preparing to unpack .../034-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
105s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
105s Preparing to unpack .../035-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
105s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
106s Selecting previously unselected package gcc-14.
106s Preparing to unpack .../036-gcc-14_14.2.0-8ubuntu1_arm64.deb ...
106s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
106s Selecting previously unselected package gcc-aarch64-linux-gnu.
106s Preparing to unpack .../037-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
106s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
106s Selecting previously unselected package gcc.
106s Preparing to unpack .../038-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
106s Unpacking gcc (4:14.1.0-2ubuntu1) ...
106s Selecting previously unselected package libstdc++-14-dev:arm64.
106s Preparing to unpack .../039-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ...
106s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
106s Selecting previously unselected package g++-14-aarch64-linux-gnu.
106s Preparing to unpack .../040-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
106s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
107s Selecting previously unselected package g++-14.
107s Preparing to unpack .../041-g++-14_14.2.0-8ubuntu1_arm64.deb ...
107s Unpacking g++-14 (14.2.0-8ubuntu1) ...
107s Selecting previously unselected package g++-aarch64-linux-gnu.
107s Preparing to unpack .../042-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
107s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
107s Selecting previously unselected package g++.
107s Preparing to unpack .../043-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
107s Unpacking g++ (4:14.1.0-2ubuntu1) ...
107s Selecting previously unselected package build-essential.
107s Preparing to unpack .../044-build-essential_12.10ubuntu1_arm64.deb ...
107s Unpacking build-essential (12.10ubuntu1) ...
107s Selecting previously unselected package cython3.
107s Preparing to unpack .../045-cython3_3.0.11+dfsg-1ubuntu1_arm64.deb ...
107s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ...
107s Selecting previously unselected package libdebhelper-perl.
107s Preparing to unpack .../046-libdebhelper-perl_13.20ubuntu1_all.deb ...
107s Unpacking libdebhelper-perl (13.20ubuntu1) ...
107s Selecting previously unselected package libtool.
107s Preparing to unpack .../047-libtool_2.4.7-7build1_all.deb ...
107s Unpacking libtool (2.4.7-7build1) ...
107s Selecting previously unselected package dh-autoreconf.
107s Preparing to unpack .../048-dh-autoreconf_20_all.deb ...
107s Unpacking dh-autoreconf (20) ...
107s Selecting previously unselected package libarchive-zip-perl.
107s Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ...
107s Unpacking libarchive-zip-perl (1.68-1) ...
107s Selecting previously unselected package libfile-stripnondeterminism-perl.
107s Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
107s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
107s Selecting previously unselected package dh-strip-nondeterminism.
107s Preparing to unpack .../051-dh-strip-nondeterminism_1.14.0-1_all.deb ...
107s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
107s Selecting previously unselected package debugedit.
107s Preparing to unpack .../052-debugedit_1%3a5.1-1_arm64.deb ...
107s Unpacking debugedit (1:5.1-1) ...
107s Selecting previously unselected package dwz.
107s Preparing to unpack .../053-dwz_0.15-1build6_arm64.deb ...
107s Unpacking dwz (0.15-1build6) ...
107s Selecting previously unselected package gettext.
107s Preparing to unpack .../054-gettext_0.22.5-2_arm64.deb ...
107s Unpacking gettext (0.22.5-2) ...
107s Selecting previously unselected package intltool-debian.
107s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ...
107s Unpacking intltool-debian (0.35.0+20060710.6) ...
107s Selecting previously unselected package po-debconf.
107s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ...
107s Unpacking po-debconf (1.0.21+nmu1) ...
107s Selecting previously unselected package debhelper.
107s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ...
107s Unpacking debhelper (13.20ubuntu1) ...
108s Selecting previously unselected package dh-python.
108s Preparing to unpack .../058-dh-python_6.20241024_all.deb ...
108s Unpacking dh-python (6.20241024) ...
108s Selecting previously unselected package fonts-lyx.
108s Preparing to unpack .../059-fonts-lyx_2.4.2.1-1_all.deb ...
108s Unpacking fonts-lyx (2.4.2.1-1) ...
108s Selecting previously unselected package libblas3:arm64.
108s Preparing to unpack .../060-libblas3_3.12.0-3build2_arm64.deb ...
108s Unpacking libblas3:arm64 (3.12.0-3build2) ...
108s Selecting previously unselected package libdeflate0:arm64.
108s Preparing to unpack .../061-libdeflate0_1.22-1_arm64.deb ...
108s Unpacking libdeflate0:arm64 (1.22-1) ...
108s Selecting previously unselected package libexpat1-dev:arm64.
108s Preparing to unpack .../062-libexpat1-dev_2.6.2-2_arm64.deb ...
108s Unpacking libexpat1-dev:arm64 (2.6.2-2) ...
108s Selecting previously unselected package libgfortran5:arm64.
108s Preparing to unpack .../063-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
108s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
108s Selecting previously unselected package libgraphite2-3:arm64.
108s Preparing to unpack .../064-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
108s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
108s Selecting previously unselected package libharfbuzz0b:arm64.
108s Preparing to unpack .../065-libharfbuzz0b_10.0.1-1_arm64.deb ...
108s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ...
108s Selecting previously unselected package libhtscodecs2:arm64.
108s Preparing to unpack .../066-libhtscodecs2_1.6.1-1_arm64.deb ...
108s Unpacking libhtscodecs2:arm64 (1.6.1-1) ...
108s Selecting previously unselected package libhts3t64:arm64.
108s Preparing to unpack .../067-libhts3t64_1.20+ds-1_arm64.deb ...
108s Unpacking libhts3t64:arm64 (1.20+ds-1) ...
108s Selecting previously unselected package libimagequant0:arm64.
108s Preparing to unpack .../068-libimagequant0_2.18.0-1build1_arm64.deb ...
108s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
108s Selecting previously unselected package libjpeg-turbo8:arm64.
108s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ...
108s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ...
108s Selecting previously unselected package libjpeg8:arm64.
108s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_arm64.deb ...
108s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
108s Selecting previously unselected package libjs-jquery.
108s Preparing to unpack .../071-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
108s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
108s Selecting previously unselected package libjs-jquery-ui.
108s Preparing to unpack .../072-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
108s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
108s Selecting previously unselected package libjs-underscore.
108s Preparing to unpack .../073-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
108s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
108s Selecting previously unselected package libjs-sphinxdoc.
108s Preparing to unpack .../074-libjs-sphinxdoc_7.4.7-4_all.deb ...
108s Unpacking libjs-sphinxdoc (7.4.7-4) ...
108s Selecting previously unselected package liblapack3:arm64.
108s Preparing to unpack .../075-liblapack3_3.12.0-3build2_arm64.deb ...
108s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
108s Selecting previously unselected package liblbfgsb0:arm64.
108s Preparing to unpack .../076-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
108s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
108s Selecting previously unselected package liblcms2-2:arm64.
108s Preparing to unpack .../077-liblcms2-2_2.16-2_arm64.deb ...
108s Unpacking liblcms2-2:arm64 (2.16-2) ...
109s Selecting previously unselected package liblerc4:arm64.
109s Preparing to unpack .../078-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ...
109s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ...
109s Selecting previously unselected package zlib1g-dev:arm64.
109s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
109s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
109s Selecting previously unselected package libpython3.12-dev:arm64.
109s Preparing to unpack .../080-libpython3.12-dev_3.12.7-3_arm64.deb ...
109s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ...
109s Selecting previously unselected package libpython3-dev:arm64.
109s Preparing to unpack .../081-libpython3-dev_3.12.7-1_arm64.deb ...
109s Unpacking libpython3-dev:arm64 (3.12.7-1) ...
109s Selecting previously unselected package libpython3.13-stdlib:arm64.
109s Preparing to unpack .../082-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
109s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
109s Selecting previously unselected package libpython3.13:arm64.
109s Preparing to unpack .../083-libpython3.13_3.13.0-2_arm64.deb ...
109s Unpacking libpython3.13:arm64 (3.13.0-2) ...
109s Selecting previously unselected package libpython3.13-dev:arm64.
109s Preparing to unpack .../084-libpython3.13-dev_3.13.0-2_arm64.deb ...
109s Unpacking libpython3.13-dev:arm64 (3.13.0-2) ...
109s Selecting previously unselected package libpython3-all-dev:arm64.
109s Preparing to unpack .../085-libpython3-all-dev_3.12.7-1_arm64.deb ...
109s Unpacking libpython3-all-dev:arm64 (3.12.7-1) ...
109s Selecting previously unselected package libqhull-r8.0:arm64.
109s Preparing to unpack .../086-libqhull-r8.0_2020.2-6build1_arm64.deb ...
109s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
109s Selecting previously unselected package libraqm0:arm64.
109s Preparing to unpack .../087-libraqm0_0.10.1-1build1_arm64.deb ...
109s Unpacking libraqm0:arm64 (0.10.1-1build1) ...
109s Selecting previously unselected package libsharpyuv0:arm64.
109s Preparing to unpack .../088-libsharpyuv0_1.4.0-0.1_arm64.deb ...
109s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ...
109s Selecting previously unselected package libjbig0:arm64.
110s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
110s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
110s Selecting previously unselected package libwebp7:arm64.
110s Preparing to unpack .../090-libwebp7_1.4.0-0.1_arm64.deb ...
110s Unpacking libwebp7:arm64 (1.4.0-0.1) ...
110s Selecting previously unselected package libtiff6:arm64.
110s Preparing to unpack .../091-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
110s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
110s Selecting previously unselected package libwebpdemux2:arm64.
110s Preparing to unpack .../092-libwebpdemux2_1.4.0-0.1_arm64.deb ...
110s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ...
110s Selecting previously unselected package libwebpmux3:arm64.
110s Preparing to unpack .../093-libwebpmux3_1.4.0-0.1_arm64.deb ...
110s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ...
110s Selecting previously unselected package libxslt1.1:arm64.
110s Preparing to unpack .../094-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ...
110s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ...
110s Selecting previously unselected package pybuild-plugin-autopkgtest.
110s Preparing to unpack .../095-pybuild-plugin-autopkgtest_6.20241024_all.deb ...
110s Unpacking pybuild-plugin-autopkgtest (6.20241024) ...
110s Selecting previously unselected package python-matplotlib-data.
110s Preparing to unpack .../096-python-matplotlib-data_3.8.3-3_all.deb ...
110s Unpacking python-matplotlib-data (3.8.3-3) ...
110s Selecting previously unselected package python3.13.
110s Preparing to unpack .../097-python3.13_3.13.0-2_arm64.deb ...
110s Unpacking python3.13 (3.13.0-2) ...
110s Selecting previously unselected package python3-all.
110s Preparing to unpack .../098-python3-all_3.12.7-1_arm64.deb ...
110s Unpacking python3-all (3.12.7-1) ...
110s Selecting previously unselected package python3.12-dev.
110s Preparing to unpack .../099-python3.12-dev_3.12.7-3_arm64.deb ...
110s Unpacking python3.12-dev (3.12.7-3) ...
110s Selecting previously unselected package python3-dev.
110s Preparing to unpack .../100-python3-dev_3.12.7-1_arm64.deb ...
110s Unpacking python3-dev (3.12.7-1) ...
110s Selecting previously unselected package python3.13-dev.
110s Preparing to unpack .../101-python3.13-dev_3.13.0-2_arm64.deb ...
110s Unpacking python3.13-dev (3.13.0-2) ...
110s Selecting previously unselected package python3-all-dev.
110s Preparing to unpack .../102-python3-all-dev_3.12.7-1_arm64.deb ...
110s Unpacking python3-all-dev (3.12.7-1) ...
110s Selecting previously unselected package python3-appdirs.
110s Preparing to unpack .../103-python3-appdirs_1.4.4-4_all.deb ...
110s Unpacking python3-appdirs (1.4.4-4) ...
110s Selecting previously unselected package python3-brotli.
110s Preparing to unpack .../104-python3-brotli_1.1.0-2build2_arm64.deb ...
110s Unpacking python3-brotli (1.1.0-2build2) ...
110s Selecting previously unselected package python3-numpy.
110s Preparing to unpack .../105-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
110s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
111s Selecting previously unselected package python3-contourpy.
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111s Unpacking python3-contourpy (1.3.0-2) ...
111s Selecting previously unselected package python3-xopen.
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111s Unpacking python3-xopen (1.7.0-2) ...
111s Selecting previously unselected package python3-dnaio.
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111s Unpacking python3-dnaio (1.2.2-1) ...
111s Selecting previously unselected package python3-cutadapt.
111s Preparing to unpack .../109-python3-cutadapt_4.7-2_arm64.deb ...
111s Unpacking python3-cutadapt (4.7-2) ...
111s Selecting previously unselected package python3-cycler.
111s Preparing to unpack .../110-python3-cycler_0.12.1-1_all.deb ...
111s Unpacking python3-cycler (0.12.1-1) ...
111s Selecting previously unselected package python3-six.
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111s Unpacking python3-six (1.16.0-7) ...
111s Selecting previously unselected package python3-dateutil.
111s Preparing to unpack .../112-python3-dateutil_2.9.0-2_all.deb ...
111s Unpacking python3-dateutil (2.9.0-2) ...
111s Selecting previously unselected package python3-decorator.
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111s Unpacking python3-decorator (5.1.1-5) ...
111s Selecting previously unselected package python3-scipy.
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111s Selecting previously unselected package python3-ufolib2.
111s Preparing to unpack .../115-python3-ufolib2_0.16.1+dfsg1-1_all.deb ...
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112s Selecting previously unselected package python3-mpmath.
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112s Unpacking python3-mpmath (1.3.0-1) ...
112s Selecting previously unselected package python3-sympy.
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112s Unpacking python3-sympy (1.13.3-1) ...
112s Selecting previously unselected package python3-tz.
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112s Selecting previously unselected package python3-fs.
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112s Selecting previously unselected package python3-lxml:arm64.
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112s Unpacking python3-lxml:arm64 (5.3.0-1) ...
112s Selecting previously unselected package python3-lz4.
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112s Selecting previously unselected package python3-unicodedata2.
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112s Selecting previously unselected package unicode-data.
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113s Selecting previously unselected package python3-iniconfig.
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113s Selecting previously unselected package python3-kiwisolver.
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113s Selecting previously unselected package libopenjp2-7:arm64.
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113s Selecting previously unselected package python3-pil:arm64.
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113s Selecting previously unselected package python3.12-tk.
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113s Selecting previously unselected package python3-pil.imagetk:arm64.
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113s Selecting previously unselected package python3-pandas-lib:arm64.
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114s Selecting previously unselected package autopkgtest-satdep.
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114s Setting up libhtscodecs2:arm64 (1.6.1-1) ...
114s Setting up dh-python (6.20241024) ...
114s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
114s Setting up liblcms2-2:arm64 (2.16-2) ...
114s Setting up python3-iniconfig (1.1.1-2) ...
115s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ...
115s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ...
115s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
115s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
115s Setting up libarchive-zip-perl (1.68-1) ...
115s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ...
115s Setting up fonts-lyx (2.4.2.1-1) ...
115s Setting up libdebhelper-perl (13.20ubuntu1) ...
115s Setting up x11-common (1:7.7+23ubuntu3) ...
115s Setting up libdeflate0:arm64 (1.22-1) ...
115s Setting up m4 (1.4.19-4build1) ...
115s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
115s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
115s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
115s Setting up python3-tz (2024.1-2) ...
116s Setting up unicode-data (15.1.0-1) ...
116s Setting up python3-six (1.16.0-7) ...
116s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
116s Setting up python3-decorator (5.1.1-5) ...
116s Setting up autotools-dev (20220109.1) ...
116s Setting up libblas3:arm64 (3.12.0-3build2) ...
116s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
116s Setting up python3-packaging (24.1-1) ...
116s Setting up libexpat1-dev:arm64 (2.6.2-2) ...
116s Setting up python3-brotli (1.1.0-2build2) ...
117s Setting up python3-cycler (0.12.1-1) ...
117s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
117s Setting up fonts-dejavu-mono (2.37-8) ...
117s Setting up python3-kiwisolver (1.4.7-2) ...
117s Setting up libmpc3:arm64 (1.3.1-1build2) ...
117s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ...
119s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ...
119s Setting up autopoint (0.22.5-2) ...
119s Setting up fonts-dejavu-core (2.37-8) ...
119s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ...
119s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
119s Setting up autoconf (2.72-3) ...
119s Setting up python3-pluggy (1.5.0-1) ...
119s Setting up libwebp7:arm64 (1.4.0-0.1) ...
119s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ...
119s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
119s Setting up dwz (0.15-1build6) ...
119s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ...
119s Setting up pigz (2.8-1) ...
119s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ...
119s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ...
119s Setting up debugedit (1:5.1-1) ...
119s Setting up libhts3t64:arm64 (1.20+ds-1) ...
119s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ...
119s Setting up python3.13-minimal (3.13.0-2) ...
120s Setting up libharfbuzz0b:arm64 (10.0.1-1) ...
120s Setting up python3-dateutil (2.9.0-2) ...
120s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
121s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ...
121s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
121s Setting up python3-mpmath (1.3.0-1) ...
122s Setting up libisl23:arm64 (0.27-1) ...
122s Setting up python-matplotlib-data (3.8.3-3) ...
122s Setting up libwebpmux3:arm64 (1.4.0-0.1) ...
122s Setting up python3-appdirs (1.4.4-4) ...
122s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
122s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ...
122s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ...
122s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ...
122s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
122s Setting up libpython3.13:arm64 (3.13.0-2) ...
122s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
122s Setting up automake (1:1.16.5-1.3ubuntu1) ...
122s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
122s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
122s Setting up python3-sympy (1.13.3-1) ...
138s Setting up liblapack3:arm64 (3.12.0-3build2) ...
138s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
138s Setting up gettext (0.22.5-2) ...
138s Setting up python3-pysam (0.22.1+ds-2) ...
138s Setting up python3.13 (3.13.0-2) ...
139s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
139s Setting up python3-pytest (8.3.3-1) ...
140s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ...
140s Setting up python3-all (3.12.7-1) ...
140s Setting up libpython3.12-dev:arm64 (3.12.7-3) ...
140s Setting up intltool-debian (0.35.0+20060710.6) ...
140s Setting up python3-fs (2.4.16-4) ...
140s Setting up python3-xopen (1.7.0-2) ...
141s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
141s Setting up libraqm0:arm64 (0.10.1-1build1) ...
141s Setting up libpython3.13-dev:arm64 (3.13.0-2) ...
141s Setting up python3.12-dev (3.12.7-3) ...
141s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
145s Setting up libjs-sphinxdoc (7.4.7-4) ...
145s Setting up dh-strip-nondeterminism (1.14.0-1) ...
145s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
145s Setting up python3-lxml:arm64 (5.3.0-1) ...
145s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
145s Setting up python3-contourpy (1.3.0-2) ...
146s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
146s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
146s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
146s Setting up python3-dnaio (1.2.2-1) ...
146s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
146s Setting up libxft2:arm64 (2.3.6-1build1) ...
146s Setting up python3-scipy (1.13.1-5) ...
153s Setting up libpython3-dev:arm64 (3.12.7-1) ...
153s Setting up python3.13-dev (3.13.0-2) ...
153s Setting up po-debconf (1.0.21+nmu1) ...
153s Setting up libtk8.6:arm64 (8.6.15-1) ...
153s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
153s Setting up python3.12-tk (3.12.7-3) ...
154s Setting up python3.13-tk (3.13.0-2) ...
154s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ...
154s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
154s Setting up python3-pandas (2.2.3+dfsg-5) ...
166s Setting up python3-cutadapt (4.7-2) ...
166s Setting up libpython3-all-dev:arm64 (3.12.7-1) ...
166s Setting up python3-dev (3.12.7-1) ...
166s Setting up cpp-14 (14.2.0-8ubuntu1) ...
166s Setting up cpp (4:14.1.0-2ubuntu1) ...
166s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
166s Setting up python3-all-dev (3.12.7-1) ...
166s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
166s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
166s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
166s Setting up blt (2.5.3+dfsg-7build1) ...
166s Setting up python3-tk:arm64 (3.12.7-1) ...
166s Setting up gcc-14 (14.2.0-8ubuntu1) ...
166s Setting up python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ...
167s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
167s Setting up g++-14 (14.2.0-8ubuntu1) ...
167s Setting up libtool (2.4.7-7build1) ...
167s Setting up gcc (4:14.1.0-2ubuntu1) ...
167s Setting up dh-autoreconf (20) ...
167s Setting up g++ (4:14.1.0-2ubuntu1) ...
167s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
167s Setting up build-essential (12.10ubuntu1) ...
167s Setting up debhelper (13.20ubuntu1) ...
167s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
167s Setting up python3-fonttools (4.46.0-1build2) ...
169s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ...
169s Setting up python3-matplotlib (3.8.3-3) ...
172s Setting up python3-seaborn (0.13.2-4) ...
173s Setting up python3-sqt (0.8.0-8build1) ...
173s Setting up autopkgtest-satdep (0) ...
173s Processing triggers for libc-bin (2.40-1ubuntu3) ...
173s Processing triggers for systemd (256.5-2ubuntu4) ...
174s Processing triggers for man-db (2.12.1-3) ...
175s Processing triggers for install-info (7.1.1-1) ...
181s (Reading database ... 93468 files and directories currently installed.)
181s Removing autopkgtest-satdep (0) ...
182s autopkgtest [10:59:22]: test pybuild-autopkgtest: pybuild-autopkgtest
182s autopkgtest [10:59:22]: test pybuild-autopkgtest: [-----------------------
182s pybuild-autopkgtest
183s I: pybuild base:311: cd /tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build; python3.13 -m pytest tests
183s ============================= test session starts ==============================
183s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
183s rootdir: /tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build
183s configfile: pytest.ini
183s plugins: typeguard-4.4.1
183s collected 32 items / 2 errors
183s 
183s ==================================== ERRORS ====================================
183s _____________________ ERROR collecting tests/testalign.py ______________________
183s ImportError while importing test module '/tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build/tests/testalign.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s tests/testalign.py:1: in <module>
183s     from sqt.align import (edit_distance as ed, GlobalAlignment as GA, consensus,
183s /usr/lib/python3/dist-packages/sqt/align.py:8: in <module>
183s     from sqt._helpers import globalalign, hamming_distance
183s E   ModuleNotFoundError: No module named 'sqt._helpers'
183s ______________________ ERROR collecting tests/testdna.py _______________________
183s ImportError while importing test module '/tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build/tests/testdna.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s tests/testdna.py:1: in <module>
183s     from sqt.dna import (reverse_complement, n_intervals, intervals_complement,
183s /usr/lib/python3/dist-packages/sqt/dna.py:12: in <module>
183s     from sqt._helpers import nt_to_aa
183s E   ModuleNotFoundError: No module named 'sqt._helpers'
183s =========================== short test summary info ============================
183s ERROR tests/testalign.py
183s ERROR tests/testdna.py
183s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!!
183s ============================== 2 errors in 0.32s ===============================
183s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build; python3.13 -m pytest tests
183s I: pybuild base:311: cd /tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build; python3.12 -m pytest tests
184s ============================= test session starts ==============================
184s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
184s rootdir: /tmp/autopkgtest.qSMN2G/autopkgtest_tmp/build
184s configfile: pytest.ini
184s plugins: typeguard-4.4.1
184s collected 45 items
184s 
190s tests/testalign.py .......                                               [ 15%]
190s tests/testcigar.py ...........                                           [ 40%]
190s tests/testcolorspace.py ..                                               [ 44%]
190s tests/testdna.py ......                                                  [ 57%]
190s tests/testfasta.py .............                                         [ 86%]
190s tests/testindexedfasta.py ...                                            [ 93%]
190s tests/testintervaltree.py .                                              [ 95%]
190s tests/testmedian.py .                                                    [ 97%]
190s tests/testregion.py .                                                    [100%]
190s 
190s ============================== 45 passed in 6.58s ==============================
190s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
190s make: *** [/tmp/BgJwGSw0jO/run:4: pybuild-autopkgtest] Error 25
190s pybuild-autopkgtest: error: /tmp/BgJwGSw0jO/run pybuild-autopkgtest returned exit code 2
191s autopkgtest [10:59:31]: test pybuild-autopkgtest: -----------------------]
191s autopkgtest [10:59:31]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
191s pybuild-autopkgtest  FAIL non-zero exit status 25
192s autopkgtest [10:59:32]: @@@@@@@@@@@@@@@@@@@@ summary
192s pybuild-autopkgtest  FAIL non-zero exit status 25
208s nova [W] Skipping flock in bos03-arm64
208s Creating nova instance adt-plucky-arm64-python-sqt-20241113-105620-juju-7f2275-prod-proposed-migration-environment-20-5db6387d-6ab0-4a3a-ae02-8bb7a2f0e2f5 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...