0s autopkgtest [14:56:56]: starting date and time: 2025-03-15 14:56:56+0000 0s autopkgtest [14:56:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:56:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ef_qnq0r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-plucky-arm64-python-skbio-20250315-145656-juju-7f2275-prod-proposed-migration-environment-2-6a1eea35-a5fa-49f3-bd82-c954773e8c52 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 171s autopkgtest [14:59:47]: testbed dpkg architecture: arm64 172s autopkgtest [14:59:48]: testbed apt version: 2.9.33 172s autopkgtest [14:59:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 172s autopkgtest [14:59:48]: testbed release detected to be: None 173s autopkgtest [14:59:49]: updating testbed package index (apt update) 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 174s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 174s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 174s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 174s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 174s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 174s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 175s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 175s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 175s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 175s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 175s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 175s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 175s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 176s Fetched 1094 kB in 2s (517 kB/s) 176s Reading package lists... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Calculating upgrade... 178s Calculating upgrade... 179s The following packages will be upgraded: 179s python3-jinja2 strace 179s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 608 kB of archives. 179s After this operation, 11.3 kB of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 180s Fetched 608 kB in 1s (546 kB/s) 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 181s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 181s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 181s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 181s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 181s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 181s Setting up strace (6.13+ds-1ubuntu1) ... 181s Processing triggers for man-db (2.13.0-1) ... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Solving dependencies... 183s The following packages will be REMOVED: 183s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 183s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 183s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 183s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 183s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 183s After this operation, 267 MB disk space will be freed. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 183s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 183s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 183s Removing libpython3.12t64:arm64 (3.12.9-1) ... 183s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 183s Removing libnsl2:arm64 (1.3.0-3build3) ... 183s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 183s Removing libunwind8:arm64 (1.6.2-3.1) ... 183s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 184s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 185s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 186s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 186s /etc/kernel/postrm.d/initramfs-tools: 186s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 186s /etc/kernel/postrm.d/zz-flash-kernel: 186s flash-kernel: Kernel 6.11.0-8-generic has been removed. 186s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 186s /etc/kernel/postrm.d/zz-update-grub: 186s Sourcing file `/etc/default/grub' 186s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 186s Generating grub configuration file ... 186s Found linux image: /boot/vmlinuz-6.14.0-10-generic 186s Found initrd image: /boot/initrd.img-6.14.0-10-generic 187s Warning: os-prober will not be executed to detect other bootable partitions. 187s Systems on them will not be added to the GRUB boot configuration. 187s Check GRUB_DISABLE_OS_PROBER documentation entry. 187s Adding boot menu entry for UEFI Firmware Settings ... 187s done 187s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 187s Processing triggers for libc-bin (2.41-1ubuntu1) ... 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 187s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 187s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 187s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 187s autopkgtest [15:00:03]: upgrading testbed (apt dist-upgrade and autopurge) 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 188s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 189s Entering ResolveByKeep 190s 190s Calculating upgrade... 190s The following packages will be upgraded: 190s libc-bin libc-dev-bin libc6 libc6-dev locales 190s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 9530 kB of archives. 190s After this operation, 0 B of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 193s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 193s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 197s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 198s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 204s Preconfiguring packages ... 204s Fetched 9530 kB in 13s (711 kB/s) 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 204s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc6:arm64 (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc-bin (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 205s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up locales (2.41-1ubuntu2) ... 206s Generating locales (this might take a while)... 208s en_US.UTF-8... done 208s Generation complete. 208s Setting up libc-dev-bin (2.41-1ubuntu2) ... 208s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 208s Processing triggers for man-db (2.13.0-1) ... 209s Processing triggers for systemd (257.3-1ubuntu3) ... 210s Reading package lists... 210s Building dependency tree... 210s Reading state information... 211s Starting pkgProblemResolver with broken count: 0 211s Starting 2 pkgProblemResolver with broken count: 0 211s Done 211s Solving dependencies... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 212s autopkgtest [15:00:28]: rebooting testbed after setup commands that affected boot 235s autopkgtest [15:00:51]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 238s autopkgtest [15:00:54]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 243s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build2 (dsc) [2921 B] 243s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build2 (tar) [2204 kB] 243s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build2 (diff) [12.0 kB] 243s gpgv: Signature made Tue Mar 4 14:51:35 2025 UTC 243s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 243s gpgv: Can't check signature: No public key 243s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-4build2.dsc: no acceptable signature found 244s autopkgtest [15:01:00]: testing package python-skbio version 0.6.2-4build2 244s autopkgtest [15:01:00]: build not needed 245s autopkgtest [15:01:01]: test pybuild-autopkgtest: preparing testbed 245s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Starting pkgProblemResolver with broken count: 0 246s Starting 2 pkgProblemResolver with broken count: 0 246s Done 247s The following NEW packages will be installed: 247s architecture-properties autoconf automake autopoint autotools-dev blt 247s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 247s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 247s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 247s fonts-lyx fonts-mathjax fonts-open-sans g++ g++-14 g++-14-aarch64-linux-gnu 247s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 247s gcc-aarch64-linux-gnu gettext intltool-debian libaec0 libarchive-zip-perl 247s libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0 libexpat1-dev 247s libfile-stripnondeterminism-perl libfontconfig1 libgcc-14-dev libgfortran5 247s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 247s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 247s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 247s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 247s libmpc3 libopenjp2-7 libpython3-all-dev libpython3-dev libpython3.13-dev 247s libqhull-r8.0 libraqm0 libsharpyuv0 libsimde-dev libssw-dev libssw0 247s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 247s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 247s libxss1 m4 node-fortawesome-fontawesome-free po-debconf 247s pybuild-plugin-autopkgtest python-biom-format-doc python-matplotlib-data 247s python-numpy-doc python-pandas-doc python-scipy-doc python-skbio-doc 247s python3-accessible-pygments python3-alabaster python3-all python3-all-dev 247s python3-asttokens python3-biom-format python3-brotli python3-bs4 247s python3-cachecontrol python3-click python3-contourpy python3-cycler 247s python3-dateutil python3-decorator python3-defusedxml python3-dev 247s python3-doc python3-docutils python3-executing python3-fonttools python3-fs 247s python3-h5py python3-h5py-serial python3-hdmedians python3-imagesize 247s python3-iniconfig python3-ipython python3-jedi python3-joblib 247s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 247s python3-matplotlib-inline python3-mpmath python3-msgpack python3-natsort 247s python3-numpy python3-numpy-dev python3-numpydoc python3-packaging 247s python3-pandas python3-pandas-lib python3-parso python3-patsy 247s python3-pexpect python3-pil python3-pil.imagetk python3-platformdirs 247s python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-pure-eval 247s python3-pydata-sphinx-theme python3-pytest python3-pytz python3-roman 247s python3-scipy python3-skbio python3-sklearn python3-sklearn-lib 247s python3-snowballstemmer python3-soupsieve python3-sphinx 247s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 247s python3-statsmodels python3-statsmodels-lib python3-sympy python3-tabulate 247s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 247s python3-tz python3-ufolib2 python3-wcwidth python3.12-tk python3.13-dev 247s python3.13-doc python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 247s unicode-data x11-common xml-core zlib1g-dev 247s 0 upgraded, 196 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 221 MB of archives. 247s After this operation, 1245 MB of additional disk space will be used. 247s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 248s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 248s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 248s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 252s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 256s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 257s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 architecture-properties arm64 0.2.6 [2208 B] 257s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-7 [244 kB] 257s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 257s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 257s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 258s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.23.1-1 [619 kB] 259s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 260s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 261s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 262s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 262s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 262s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 262s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 262s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 262s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 262s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 263s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 264s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 264s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 265s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 265s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 278s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 278s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 278s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 278s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 282s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 284s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 287s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 289s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 291s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 294s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 321s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 322s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 322s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 322s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 325s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 340s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 340s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 340s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 340s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 340s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu2 [2436 kB] 343s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 343s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.5.4-4 [168 kB] 343s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 343s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 343s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 343s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 343s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-2 [46.1 kB] 343s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 343s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.23.1-1 [998 kB] 345s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 345s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 345s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.24.1ubuntu2 [895 kB] 346s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20250308 [118 kB] 346s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 346s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 346s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 347s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 350s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-open-sans all 1.11-2 [635 kB] 350s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 350s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 350s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.4-1 [129 kB] 351s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 351s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 351s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 351s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 353s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 353s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 353s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 353s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 353s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 353s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 354s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 354s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 354s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 354s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 354s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 354s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 355s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 355s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 356s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.2-2 [5399 kB] 363s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-dev arm64 3.13.2-2 [10.7 kB] 363s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-all-dev arm64 3.13.2-2 [910 B] 363s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 363s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 363s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 363s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsimde-dev all 0.8.2-1 [466 kB] 363s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 363s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw-dev arm64 1.1-15 [23.6 kB] 364s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 364s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 364s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 364s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 364s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 364s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 365s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1653 kB] 367s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20250308 [1744 B] 367s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-biom-format-doc all 2.1.16-1build3 [57.5 kB] 367s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 371s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 python-numpy-doc all 1:2.2.3+ds-5 [5756 kB] 379s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 386s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-pandas-doc all 2.2.3+dfsg-8build1 [10.7 MB] 400s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-skbio-doc all 0.6.2-4build2 [2342 kB] 403s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-accessible-pygments all 0.0.5-2 [790 kB] 404s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.2-2 [886 B] 404s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.2-2 [509 kB] 404s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dev arm64 3.13.2-2 [26.7 kB] 404s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all-dev arm64 3.13.2-2 [914 B] 404s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asttokens all 3.0.0-1 [20.4 kB] 404s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.13.0-1 [1126 kB] 406s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.13.0-1 [7978 B] 406s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 406s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 406s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB] 406s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B] 406s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 412s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 417s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 417s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 439s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1build3 [142 kB] 439s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 439s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-soupsieve all 2.6-1 [33.0 kB] 439s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-bs4 all 4.13.3-2 [136 kB] 440s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build4 [82.7 kB] 440s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cachecontrol all 0.14.2-1 [18.7 kB] 440s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 440s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 440s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 440s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-doc all 3.13.2-2 [14.2 MB] 458s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-doc all 3.13.2-2 [10.6 kB] 458s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 5.0-1 [10.3 kB] 458s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 458s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-executing all 2.2.0-0.1 [25.0 kB] 458s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 458s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 458s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1build1 [1258 kB] 460s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 460s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 460s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 465s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 465s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 476s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 477s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-6build1 [129 kB] 478s Get:153 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 478s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 478s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-parso all 0.8.4-1 [67.6 kB] 478s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1548 kB] 479s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB] 480s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 480s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 480s Get:160 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 480s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-prompt-toolkit all 3.0.50-1 [257 kB] 480s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pure-eval all 0.2.3-1 [11.4 kB] 480s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB] 481s Get:164 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 481s Get:165 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pexpect all 4.9-3 [48.1 kB] 481s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython all 8.30.0-2 [569 kB] 481s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 481s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 481s Get:169 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 482s Get:170 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 482s Get:171 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 482s Get:172 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-2 [106 kB] 482s Get:173 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 482s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 482s Get:175 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 482s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-7build1 [17.3 MB] 503s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 503s Get:178 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 8.1.3-4 [663 kB] 504s Get:179 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 504s Get:180 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 504s Get:181 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 8.1.3-4 [474 kB] 504s Get:182 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 504s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-numpydoc all 1.8.0-1 [52.4 kB] 504s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 1.0.1-1 [180 kB] 504s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 504s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydata-sphinx-theme all 0.16.1+dfsg-3 [959 kB] 506s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 506s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1build3 [1686 kB] 508s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1build3 [5011 kB] 513s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-4build2 [1406 kB] 515s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 515s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-7build2 [4107 kB] 520s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-7build2 [2258 kB] 523s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 523s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-design all 0.6.1-1 [894 kB] 524s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-scipy-doc all 1.14.1-4ubuntu2 [32.6 kB] 524s Fetched 221 MB in 4min 37s (799 kB/s) 524s Selecting previously unselected package python3-numpy-dev:arm64. 525s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 525s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 525s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 525s Selecting previously unselected package libblas3:arm64. 525s Preparing to unpack .../001-libblas3_3.12.1-2_arm64.deb ... 525s Unpacking libblas3:arm64 (3.12.1-2) ... 525s Selecting previously unselected package libgfortran5:arm64. 525s Preparing to unpack .../002-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 525s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 525s Selecting previously unselected package liblapack3:arm64. 525s Preparing to unpack .../003-liblapack3_3.12.1-2_arm64.deb ... 525s Unpacking liblapack3:arm64 (3.12.1-2) ... 525s Selecting previously unselected package python3-numpy. 525s Preparing to unpack .../004-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 525s Unpacking python3-numpy (1:2.2.3+ds-5) ... 525s Selecting previously unselected package sgml-base. 525s Preparing to unpack .../005-sgml-base_1.31_all.deb ... 525s Unpacking sgml-base (1.31) ... 525s Selecting previously unselected package architecture-properties:arm64. 525s Preparing to unpack .../006-architecture-properties_0.2.6_arm64.deb ... 525s Unpacking architecture-properties:arm64 (0.2.6) ... 525s Selecting previously unselected package m4. 525s Preparing to unpack .../007-m4_1.4.19-7_arm64.deb ... 525s Unpacking m4 (1.4.19-7) ... 525s Selecting previously unselected package autoconf. 525s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ... 525s Unpacking autoconf (2.72-3ubuntu1) ... 525s Selecting previously unselected package autotools-dev. 525s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ... 525s Unpacking autotools-dev (20220109.1) ... 525s Selecting previously unselected package automake. 525s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ... 525s Unpacking automake (1:1.17-3ubuntu1) ... 526s Selecting previously unselected package autopoint. 526s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ... 526s Unpacking autopoint (0.23.1-1) ... 526s Selecting previously unselected package libtcl8.6:arm64. 526s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 526s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 526s Selecting previously unselected package fonts-dejavu-mono. 526s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ... 526s Unpacking fonts-dejavu-mono (2.37-8) ... 526s Selecting previously unselected package fonts-dejavu-core. 526s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ... 526s Unpacking fonts-dejavu-core (2.37-8) ... 526s Selecting previously unselected package fontconfig-config. 526s Preparing to unpack .../015-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 526s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 526s Selecting previously unselected package libfontconfig1:arm64. 526s Preparing to unpack .../016-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 526s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 526s Selecting previously unselected package libxrender1:arm64. 526s Preparing to unpack .../017-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 526s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 526s Selecting previously unselected package libxft2:arm64. 526s Preparing to unpack .../018-libxft2_2.3.6-1build1_arm64.deb ... 526s Unpacking libxft2:arm64 (2.3.6-1build1) ... 526s Selecting previously unselected package x11-common. 526s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu3_all.deb ... 526s Unpacking x11-common (1:7.7+23ubuntu3) ... 526s Selecting previously unselected package libxss1:arm64. 526s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_arm64.deb ... 526s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 526s Selecting previously unselected package libtk8.6:arm64. 526s Preparing to unpack .../021-libtk8.6_8.6.16-1_arm64.deb ... 526s Unpacking libtk8.6:arm64 (8.6.16-1) ... 527s Selecting previously unselected package tk8.6-blt2.5. 527s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 527s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 527s Selecting previously unselected package blt. 527s Preparing to unpack .../023-blt_2.5.3+dfsg-8_arm64.deb ... 527s Unpacking blt (2.5.3+dfsg-8) ... 527s Selecting previously unselected package libisl23:arm64. 527s Preparing to unpack .../024-libisl23_0.27-1_arm64.deb ... 527s Unpacking libisl23:arm64 (0.27-1) ... 527s Selecting previously unselected package libmpc3:arm64. 527s Preparing to unpack .../025-libmpc3_1.3.1-1build2_arm64.deb ... 527s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 527s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 527s Preparing to unpack .../026-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 527s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 527s Selecting previously unselected package cpp-14. 527s Preparing to unpack .../027-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 527s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 527s Selecting previously unselected package cpp-aarch64-linux-gnu. 527s Preparing to unpack .../028-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 527s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 527s Selecting previously unselected package cpp. 527s Preparing to unpack .../029-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 527s Unpacking cpp (4:14.2.0-1ubuntu1) ... 527s Selecting previously unselected package libcc1-0:arm64. 527s Preparing to unpack .../030-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 527s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 527s Selecting previously unselected package libgomp1:arm64. 527s Preparing to unpack .../031-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 527s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 527s Selecting previously unselected package libitm1:arm64. 527s Preparing to unpack .../032-libitm1_15-20250222-0ubuntu1_arm64.deb ... 527s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 527s Selecting previously unselected package libasan8:arm64. 527s Preparing to unpack .../033-libasan8_15-20250222-0ubuntu1_arm64.deb ... 527s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 527s Selecting previously unselected package liblsan0:arm64. 527s Preparing to unpack .../034-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 527s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 528s Selecting previously unselected package libtsan2:arm64. 528s Preparing to unpack .../035-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 528s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 528s Selecting previously unselected package libubsan1:arm64. 528s Preparing to unpack .../036-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 528s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 528s Selecting previously unselected package libhwasan0:arm64. 528s Preparing to unpack .../037-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 528s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 528s Selecting previously unselected package libgcc-14-dev:arm64. 528s Preparing to unpack .../038-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 528s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 528s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 528s Preparing to unpack .../039-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 528s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 528s Selecting previously unselected package gcc-14. 528s Preparing to unpack .../040-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 528s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 528s Selecting previously unselected package gcc-aarch64-linux-gnu. 528s Preparing to unpack .../041-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 528s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 528s Selecting previously unselected package gcc. 528s Preparing to unpack .../042-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 528s Unpacking gcc (4:14.2.0-1ubuntu1) ... 529s Selecting previously unselected package libstdc++-14-dev:arm64. 529s Preparing to unpack .../043-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 529s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 529s Selecting previously unselected package g++-14-aarch64-linux-gnu. 529s Preparing to unpack .../044-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 529s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 529s Selecting previously unselected package g++-14. 529s Preparing to unpack .../045-g++-14_14.2.0-17ubuntu3_arm64.deb ... 529s Unpacking g++-14 (14.2.0-17ubuntu3) ... 529s Selecting previously unselected package g++-aarch64-linux-gnu. 529s Preparing to unpack .../046-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 529s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 529s Selecting previously unselected package g++. 529s Preparing to unpack .../047-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 529s Unpacking g++ (4:14.2.0-1ubuntu1) ... 529s Selecting previously unselected package build-essential. 529s Preparing to unpack .../048-build-essential_12.10ubuntu1_arm64.deb ... 529s Unpacking build-essential (12.10ubuntu1) ... 529s Selecting previously unselected package cython3. 529s Preparing to unpack .../049-cython3_3.0.11+dfsg-2ubuntu2_arm64.deb ... 529s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ... 529s Selecting previously unselected package libdebhelper-perl. 529s Preparing to unpack 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dh-strip-nondeterminism (1.14.1-2) ... 530s Selecting previously unselected package debugedit. 530s Preparing to unpack .../056-debugedit_1%3a5.1-2_arm64.deb ... 530s Unpacking debugedit (1:5.1-2) ... 530s Selecting previously unselected package dwz. 530s Preparing to unpack .../057-dwz_0.15-1build6_arm64.deb ... 530s Unpacking dwz (0.15-1build6) ... 530s Selecting previously unselected package gettext. 530s Preparing to unpack .../058-gettext_0.23.1-1_arm64.deb ... 530s Unpacking gettext (0.23.1-1) ... 530s Selecting previously unselected package intltool-debian. 530s Preparing to unpack .../059-intltool-debian_0.35.0+20060710.6_all.deb ... 530s Unpacking intltool-debian (0.35.0+20060710.6) ... 530s Selecting previously unselected package po-debconf. 530s Preparing to unpack .../060-po-debconf_1.0.21+nmu1_all.deb ... 530s Unpacking po-debconf (1.0.21+nmu1) ... 530s Selecting previously unselected package debhelper. 530s Preparing to unpack .../061-debhelper_13.24.1ubuntu2_all.deb ... 530s Unpacking debhelper (13.24.1ubuntu2) ... 530s Selecting previously unselected package dh-python. 530s Preparing to unpack .../062-dh-python_6.20250308_all.deb ... 530s Unpacking dh-python (6.20250308) ... 530s Selecting previously unselected package xml-core. 530s Preparing to unpack .../063-xml-core_0.19_all.deb ... 530s Unpacking xml-core (0.19) ... 530s Selecting previously unselected package docutils-common. 530s Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... 530s Unpacking docutils-common (0.21.2+dfsg-2) ... 530s Selecting previously unselected package fonts-lyx. 530s Preparing to unpack .../065-fonts-lyx_2.4.3-1_all.deb ... 530s Unpacking fonts-lyx (2.4.3-1) ... 530s Selecting previously unselected package fonts-mathjax. 530s Preparing to unpack .../066-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 530s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 530s Selecting previously unselected package fonts-open-sans. 530s Preparing to unpack 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... 531s Selecting previously unselected package libsz2:arm64. 531s Preparing to unpack .../073-libsz2_1.1.3-1_arm64.deb ... 531s Unpacking libsz2:arm64 (1.1.3-1) ... 531s Selecting previously unselected package libhdf5-310:arm64. 531s Preparing to unpack .../074-libhdf5-310_1.14.5+repack-3_arm64.deb ... 531s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 531s Selecting previously unselected package libhdf5-hl-310:arm64. 531s Preparing to unpack .../075-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 531s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 531s Selecting previously unselected package libimagequant0:arm64. 531s Preparing to unpack .../076-libimagequant0_2.18.0-1build1_arm64.deb ... 531s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 531s Selecting previously unselected package libjpeg-turbo8:arm64. 531s Preparing to unpack .../077-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 531s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 531s Selecting previously unselected package libjpeg8:arm64. 531s Preparing to unpack .../078-libjpeg8_8c-2ubuntu11_arm64.deb ... 531s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 531s Selecting previously unselected package libjs-jquery. 531s Preparing to unpack .../079-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 531s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 531s Selecting previously unselected package libjs-jquery-ui. 531s Preparing to unpack .../080-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 531s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 531s Selecting previously unselected package libjs-underscore. 531s Preparing to unpack .../081-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 531s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 531s Selecting previously unselected package libjs-sphinxdoc. 531s Preparing to unpack .../082-libjs-sphinxdoc_8.1.3-4_all.deb ... 531s Unpacking libjs-sphinxdoc (8.1.3-4) ... 531s Selecting previously unselected package libjson-perl. 531s Preparing to unpack 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(1:1.3.dfsg+really1.3.1-1ubuntu1) ... 532s Selecting previously unselected package libpython3.13-dev:arm64. 532s Preparing to unpack .../089-libpython3.13-dev_3.13.2-2_arm64.deb ... 532s Unpacking libpython3.13-dev:arm64 (3.13.2-2) ... 532s Selecting previously unselected package libpython3-dev:arm64. 532s Preparing to unpack .../090-libpython3-dev_3.13.2-2_arm64.deb ... 532s Unpacking libpython3-dev:arm64 (3.13.2-2) ... 532s Selecting previously unselected package libpython3-all-dev:arm64. 532s Preparing to unpack .../091-libpython3-all-dev_3.13.2-2_arm64.deb ... 532s Unpacking libpython3-all-dev:arm64 (3.13.2-2) ... 532s Selecting previously unselected package libqhull-r8.0:arm64. 532s Preparing to unpack .../092-libqhull-r8.0_2020.2-6build1_arm64.deb ... 532s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 532s Selecting previously unselected package libraqm0:arm64. 532s Preparing to unpack .../093-libraqm0_0.10.2-1_arm64.deb ... 532s Unpacking libraqm0:arm64 (0.10.2-1) ... 532s Selecting previously unselected package libsharpyuv0:arm64. 532s Preparing to unpack .../094-libsharpyuv0_1.5.0-0.1_arm64.deb ... 532s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 532s Selecting previously unselected package libsimde-dev. 532s Preparing to unpack .../095-libsimde-dev_0.8.2-1_all.deb ... 532s Unpacking libsimde-dev (0.8.2-1) ... 532s Selecting previously unselected package libssw0:arm64. 532s Preparing to unpack .../096-libssw0_1.1-15_arm64.deb ... 532s Unpacking libssw0:arm64 (1.1-15) ... 532s Selecting previously unselected package libssw-dev:arm64. 532s Preparing to unpack .../097-libssw-dev_1.1-15_arm64.deb ... 532s Unpacking libssw-dev:arm64 (1.1-15) ... 532s Selecting previously unselected package libjbig0:arm64. 532s Preparing to unpack .../098-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 532s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 532s Selecting previously unselected package libwebp7:arm64. 532s Preparing to unpack .../099-libwebp7_1.5.0-0.1_arm64.deb ... 532s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 532s Selecting previously unselected package libtiff6:arm64. 532s Preparing to unpack .../100-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 532s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 532s Selecting previously unselected package libwebpdemux2:arm64. 532s Preparing to unpack .../101-libwebpdemux2_1.5.0-0.1_arm64.deb ... 532s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 533s Selecting previously unselected package libwebpmux3:arm64. 533s Preparing to unpack .../102-libwebpmux3_1.5.0-0.1_arm64.deb ... 533s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 533s Selecting previously unselected package libxslt1.1:arm64. 533s Preparing to unpack .../103-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 533s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 533s Selecting previously unselected package node-fortawesome-fontawesome-free. 533s Preparing to unpack .../104-node-fortawesome-fontawesome-free_6.7.2+ds1-1_all.deb ... 533s Unpacking node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 533s Selecting previously unselected package pybuild-plugin-autopkgtest. 533s Preparing to unpack .../105-pybuild-plugin-autopkgtest_6.20250308_all.deb ... 533s Unpacking pybuild-plugin-autopkgtest (6.20250308) ... 533s Selecting previously unselected package python-biom-format-doc. 533s Preparing to unpack .../106-python-biom-format-doc_2.1.16-1build3_all.deb ... 533s Unpacking python-biom-format-doc (2.1.16-1build3) ... 533s Selecting previously unselected package python-matplotlib-data. 533s Preparing to unpack .../107-python-matplotlib-data_3.8.3-7build1_all.deb ... 533s Unpacking python-matplotlib-data (3.8.3-7build1) ... 533s Selecting previously unselected package python-numpy-doc. 533s Preparing to unpack .../108-python-numpy-doc_1%3a2.2.3+ds-5_all.deb ... 533s Unpacking python-numpy-doc (1:2.2.3+ds-5) ... 534s Selecting previously unselected package libjs-mathjax. 534s Preparing to unpack .../109-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 534s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 535s Selecting previously unselected package python-pandas-doc. 535s Preparing to unpack .../110-python-pandas-doc_2.2.3+dfsg-8build1_all.deb ... 535s Unpacking python-pandas-doc (2.2.3+dfsg-8build1) ... 536s Selecting previously unselected package python-skbio-doc. 536s Preparing to unpack .../111-python-skbio-doc_0.6.2-4build2_all.deb ... 536s Unpacking python-skbio-doc (0.6.2-4build2) ... 536s Selecting previously unselected package python3-accessible-pygments. 536s Preparing to unpack .../112-python3-accessible-pygments_0.0.5-2_all.deb ... 536s Unpacking python3-accessible-pygments (0.0.5-2) ... 536s Selecting previously unselected package python3-all. 536s Preparing to unpack .../113-python3-all_3.13.2-2_arm64.deb ... 536s Unpacking python3-all (3.13.2-2) ... 536s Selecting previously unselected package python3.13-dev. 536s Preparing to unpack .../114-python3.13-dev_3.13.2-2_arm64.deb 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unselected package python3-defusedxml. 539s Preparing to unpack .../136-python3-defusedxml_0.7.1-3_all.deb ... 539s Unpacking python3-defusedxml (0.7.1-3) ... 539s Selecting previously unselected package python3.13-doc. 539s Preparing to unpack .../137-python3.13-doc_3.13.2-2_all.deb ... 539s Unpacking python3.13-doc (3.13.2-2) ... 539s Selecting previously unselected package python3-doc. 539s Preparing to unpack .../138-python3-doc_3.13.2-2_all.deb ... 539s Unpacking python3-doc (3.13.2-2) ... 539s Selecting previously unselected package python3-roman. 539s Preparing to unpack .../139-python3-roman_5.0-1_all.deb ... 539s Unpacking python3-roman (5.0-1) ... 539s Selecting previously unselected package python3-docutils. 539s Preparing to unpack .../140-python3-docutils_0.21.2+dfsg-2_all.deb ... 539s Unpacking python3-docutils (0.21.2+dfsg-2) ... 539s Selecting previously unselected package python3-executing. 539s Preparing to unpack .../141-python3-executing_2.2.0-0.1_all.deb ... 539s 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python3-sympy. 540s Preparing to unpack .../147-python3-sympy_1.13.3-5_all.deb ... 540s Unpacking python3-sympy (1.13.3-5) ... 540s Selecting previously unselected package python3-ufolib2. 540s Preparing to unpack .../148-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 540s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 540s Selecting previously unselected package unicode-data. 540s Preparing to unpack .../149-unicode-data_15.1.0-1_all.deb ... 540s Unpacking unicode-data (15.1.0-1) ... 540s Selecting previously unselected package python3-fonttools. 540s Preparing to unpack .../150-python3-fonttools_4.55.3-2build1_arm64.deb ... 540s Unpacking python3-fonttools (4.55.3-2build1) ... 540s Selecting previously unselected package python3-hdmedians. 540s Preparing to unpack .../151-python3-hdmedians_0.14.2-6build1_arm64.deb ... 540s Unpacking python3-hdmedians (0.14.2-6build1) ... 541s Selecting previously unselected package python3-imagesize. 541s Preparing to unpack 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(0.6.3-1) ... 542s Selecting previously unselected package python3-ptyprocess. 542s Preparing to unpack .../163-python3-ptyprocess_0.7.0-6_all.deb ... 542s Unpacking python3-ptyprocess (0.7.0-6) ... 542s Selecting previously unselected package python3-pexpect. 542s Preparing to unpack .../164-python3-pexpect_4.9-3_all.deb ... 542s Unpacking python3-pexpect (4.9-3) ... 542s Selecting previously unselected package python3-ipython. 542s Preparing to unpack .../165-python3-ipython_8.30.0-2_all.deb ... 542s Unpacking python3-ipython (8.30.0-2) ... 542s Selecting previously unselected package python3-joblib. 542s Preparing to unpack .../166-python3-joblib_1.4.2-3_all.deb ... 542s Unpacking python3-joblib (1.4.2-3) ... 542s Selecting previously unselected package python3-kiwisolver. 542s Preparing to unpack .../167-python3-kiwisolver_1.4.7-3build1_arm64.deb ... 542s Unpacking python3-kiwisolver (1.4.7-3build1) ... 542s Selecting previously unselected package libopenjp2-7:arm64. 542s Preparing to unpack .../168-libopenjp2-7_2.5.3-2_arm64.deb ... 542s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 542s Selecting previously unselected package python3-pil:arm64. 542s Preparing to unpack .../169-python3-pil_11.1.0-5build1_arm64.deb ... 542s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 542s Selecting previously unselected package python3.12-tk. 542s Preparing to unpack .../170-python3.12-tk_3.12.9-1_arm64.deb ... 542s Unpacking python3.12-tk (3.12.9-1) ... 542s Selecting previously unselected package python3.13-tk. 542s Preparing to unpack .../171-python3.13-tk_3.13.2-2_arm64.deb ... 542s Unpacking python3.13-tk (3.13.2-2) ... 542s Selecting previously unselected package python3-tk:arm64. 542s Preparing to unpack .../172-python3-tk_3.13.1-1_arm64.deb ... 542s Unpacking python3-tk:arm64 (3.13.1-1) ... 543s Selecting previously unselected package python3-pil.imagetk:arm64. 543s Preparing to unpack .../173-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 543s Unpacking 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libjbig0:arm64 (2.1-6.1ubuntu2) ... 548s Setting up libaec0:arm64 (1.1.3-1) ... 548s Setting up python3-platformdirs (4.3.6-1) ... 548s Setting up python3-tz (2025.1-3) ... 548s Setting up python3-natsort (8.0.2-2) ... 548s Setting up python3-fs (2.4.16-7) ... 548s Setting up unicode-data (15.1.0-1) ... 548s Setting up python3-roman (5.0-1) ... 548s Setting up python3-decorator (5.1.1-5) ... 549s Setting up autotools-dev (20220109.1) ... 549s Setting up libblas3:arm64 (3.12.1-2) ... 549s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 549s Setting up python3-packaging (24.2-1) ... 549s Setting up libexpat1-dev:arm64 (2.6.4-1) ... 549s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 549s Setting up python3-accessible-pygments (0.0.5-2) ... 549s Setting up python3-typeshed (0.0~git20241223.ea91db2-1) ... 549s Setting up python3-executing (2.2.0-0.1) ... 549s Setting up 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(8.1.3-4) ... 587s Setting up python3-sphinx-copybutton (0.5.2-2) ... 588s Setting up python3-sphinx-design (0.6.1-1) ... 588s Setting up python3-numpydoc (1.8.0-1) ... 588s Setting up python3-pydata-sphinx-theme (0.16.1+dfsg-3) ... 589s autopkgtest [15:06:45]: test pybuild-autopkgtest: pybuild-autopkgtest 589s autopkgtest [15:06:45]: test pybuild-autopkgtest: [----------------------- 590s pybuild-autopkgtest 590s I: pybuild base:311: cd /tmp/autopkgtest.8Z2L39/autopkgtest_tmp/build; python3.13 -m pytest --pyargs skbio 594s ============================= test session starts ============================== 594s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 594s rootdir: /tmp/autopkgtest.8Z2L39/autopkgtest_tmp/build 594s configfile: pyproject.toml 594s plugins: typeguard-4.4.2 594s collected 2793 items 594s 594s alignment/tests/test_pairwise.py ......................... [ 0%] 594s alignment/tests/test_path.py ................. [ 1%] 594s alignment/tests/test_ssw.py ........................... [ 2%] 594s alignment/tests/test_tabular_msa.py .................................... [ 3%] 594s ........................................................................ [ 6%] 595s ........................................................................ [ 8%] 596s ........................................................................ [ 11%] 597s ........................................................................ [ 14%] 597s ........................................................................ [ 16%] 597s ..... [ 16%] 597s diversity/alpha/tests/test_ace.py .. [ 16%] 599s diversity/alpha/tests/test_base.py ............................... [ 18%] 599s diversity/alpha/tests/test_chao1.py ... [ 18%] 599s diversity/alpha/tests/test_gini.py .... [ 18%] 603s diversity/alpha/tests/test_lladser.py ............ 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[ 94%] 706s tree/tests/test_tree.py ................................................ [ 96%] 706s ........................................................ [ 98%] 706s util/tests/test_decorator.py ........ [ 98%] 706s util/tests/test_misc.py .................... [ 99%] 707s util/tests/test_plotting.py ...... [ 99%] 707s util/tests/test_testing.py ............... [100%] 707s 707s =============================== warnings summary =============================== 707s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 707s warn( 707s 707s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 707s warn( 707s 707s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 707s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 707s gap_freqs /= length 707s 707s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 707s warn( 707s 707s embedding/tests/test_protein.py: 3 warnings 707s sequence/tests/test_protein.py: 18 warnings 707s /usr/lib/python3/dist-packages/skbio/sequence/_protein.py:257: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 707s return np.in1d(self._bytes, self._stop_codes) 707s 707s metadata/tests/test_io.py: 10 warnings 707s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 707s series = series.replace("", np.nan) 707s 707s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 707s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 707s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 707s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 707s series[missing.index] = missing 707s 707s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 707s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 707s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 707s pdt.assert_series_equal(missing, series.astype(object)) 707s 707s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 707s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 707s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 707s pdt.assert_series_equal(missing, series[1:].astype(object)) 707s 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 707s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 707s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 707s 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 707s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 707s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 707s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 707s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 707s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 707s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 707s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 707s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 707s 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 707s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 707s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 707s 707s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 707s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 707s obs_counts = obs_counts / len(self) 707s 707s sequence/tests/test_sequence.py: 12 warnings 707s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:2209: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 707s gaps = np.in1d(seq, gap_chars) 707s 707s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 707s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 707s warnings.warn(ConstantInputWarning()) 707s 707s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 707s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 707s warnings.warn(ConstantInputWarning()) 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 707s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00657367754955049 and the largest is 0.17668321589384078. 707s warn( 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 707s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269621 and the largest is 16.587201374785895. 707s warn( 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 707s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 707s warn( 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 707s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 707s proportion_explained = eigvals / sum_eigenvalues 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 707s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:605: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 707s res = hypotest_fun_out(*samples, axis=axis, **kwds) 707s 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 707s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 707s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780542 and the largest is 2.7077929489469237. 707s warn( 707s 707s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 707s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 707s return self.run(*args, **kwds) 707s 707s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 707s warn(f"{func.__name__} is deprecated as of {ver}.") 707s 707s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 707s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 707s res = hypotest_fun_out(*samples, **kwds) 707s 707s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 707s warn(f"{func.__name__} is deprecated as of {ver}.") 707s 707s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 707s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 707s res = hypotest_fun_out(*samples, **kwds) 707s 707s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 707s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 707s X_log = np.log(mat) 707s 707s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 707s /usr/lib/python3/dist-packages/numpy/lib/_function_base_impl.py:2888: RuntimeWarning: invalid value encountered in subtract 707s X -= avg[:, None] 707s 707s stats/tests/test_composition.py::VLRTests::test_vlr 707s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 707s x = np.log(x) 707s 707s stats/tests/test_composition.py::VLRTests::test_vlr 707s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:191: RuntimeWarning: invalid value encountered in subtract 707s x = asanyarray(arr - arrmean) 707s 707s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 707s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 707s trajectories.loc[idx] = ( 707s 707s tree/tests/test_tree.py::TreeTests::test_root_at 707s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 707s warn( 707s 707s tree/tests/test_tree.py::TreeTests::test_root_at 707s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 707s warn( 707s 707s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 707s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 707s warn( 707s 707s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 707s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 707s warn( 707s 707s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 707s ========== 2763 passed, 30 skipped, 103 warnings in 115.22s (0:01:55) ========== 708s autopkgtest [15:08:44]: test pybuild-autopkgtest: -----------------------] 708s pybuild-autopkgtest PASS 708s autopkgtest [15:08:44]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 709s autopkgtest [15:08:45]: @@@@@@@@@@@@@@@@@@@@ summary 709s pybuild-autopkgtest PASS 727s nova [W] Using flock in prodstack6-arm64 727s flock: timeout while waiting to get lock 727s Creating nova instance adt-plucky-arm64-python-skbio-20250315-145656-juju-7f2275-prod-proposed-migration-environment-2-6a1eea35-a5fa-49f3-bd82-c954773e8c52 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 727s nova [W] Timed out waiting for 3c4fe9cc-a7b0-413a-84a6-901578124583 to get deleted.