0s autopkgtest [14:56:02]: starting date and time: 2025-03-15 14:56:02+0000
  0s autopkgtest [14:56:02]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [14:56:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hpuqmbe8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade python-pyvcf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-37.secgroup --name adt-plucky-arm64-python-pyvcf-20250315-145602-juju-7f2275-prod-proposed-migration-environment-2-3b5486d5-135e-40bb-8caa-4d1deb5565ba --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
170s autopkgtest [14:58:52]: testbed dpkg architecture: arm64
170s autopkgtest [14:58:52]: testbed apt version: 2.9.33
170s autopkgtest [14:58:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
170s autopkgtest [14:58:52]: testbed release detected to be: None
171s autopkgtest [14:58:53]: updating testbed package index (apt update)
172s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
172s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
172s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
172s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
172s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
173s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
173s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
173s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
173s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
173s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
173s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
174s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
174s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
174s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
174s Fetched 1094 kB in 2s (511 kB/s)
175s Reading package lists...
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
177s Calculating upgrade...
178s Calculating upgrade...
178s The following packages will be upgraded:
178s   python3-jinja2 strace
178s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
178s Need to get 608 kB of archives.
178s After this operation, 11.3 kB of additional disk space will be used.
178s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
179s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
180s Fetched 608 kB in 1s (465 kB/s)
180s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
180s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
180s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
181s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
181s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
181s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
181s Setting up strace (6.13+ds-1ubuntu1) ...
181s Processing triggers for man-db (2.13.0-1) ...
182s Reading package lists...
183s Building dependency tree...
183s Reading state information...
183s Solving dependencies...
184s The following packages will be REMOVED:
184s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
184s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
184s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
184s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
184s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
184s After this operation, 267 MB disk space will be freed.
184s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
184s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
184s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
184s Removing libpython3.12t64:arm64 (3.12.9-1) ...
184s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
185s Removing libnsl2:arm64 (1.3.0-3build3) ...
185s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
185s Removing libunwind8:arm64 (1.6.2-3.1) ...
185s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
185s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
187s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
188s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
188s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
188s /etc/kernel/postrm.d/initramfs-tools:
188s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
188s /etc/kernel/postrm.d/zz-flash-kernel:
188s flash-kernel: Kernel 6.11.0-8-generic has been removed.
188s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
188s /etc/kernel/postrm.d/zz-update-grub:
188s Sourcing file `/etc/default/grub'
188s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
188s Generating grub configuration file ...
188s Found linux image: /boot/vmlinuz-6.14.0-10-generic
188s Found initrd image: /boot/initrd.img-6.14.0-10-generic
189s Warning: os-prober will not be executed to detect other bootable partitions.
189s Systems on them will not be added to the GRUB boot configuration.
189s Check GRUB_DISABLE_OS_PROBER documentation entry.
189s Adding boot menu entry for UEFI Firmware Settings ...
189s done
189s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
189s Processing triggers for libc-bin (2.41-1ubuntu1) ...
190s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
190s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
190s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
190s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
190s autopkgtest [14:59:12]: upgrading testbed (apt dist-upgrade and autopurge)
190s Reading package lists...
191s Building dependency tree...
191s Reading state information...
191s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
192s Starting 2 pkgProblemResolver with broken count: 0
192s Done
193s Entering ResolveByKeep
193s 
193s Calculating upgrade...
194s The following packages will be upgraded:
194s   libc-bin libc-dev-bin libc6 libc6-dev locales
194s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
194s Need to get 9530 kB of archives.
194s After this operation, 0 B of additional disk space will be used.
194s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
196s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
196s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
201s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
201s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
208s Preconfiguring packages ...
208s Fetched 9530 kB in 13s (729 kB/s)
208s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
208s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
208s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
208s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
208s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
208s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
209s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
209s Setting up libc6:arm64 (2.41-1ubuntu2) ...
209s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
209s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
209s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
209s Setting up libc-bin (2.41-1ubuntu2) ...
209s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
209s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
209s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
210s Setting up locales (2.41-1ubuntu2) ...
211s Generating locales (this might take a while)...
213s   en_US.UTF-8... done
213s Generation complete.
213s Setting up libc-dev-bin (2.41-1ubuntu2) ...
213s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
213s Processing triggers for man-db (2.13.0-1) ...
214s Processing triggers for systemd (257.3-1ubuntu3) ...
216s Reading package lists...
216s Building dependency tree...
216s Reading state information...
217s Starting pkgProblemResolver with broken count: 0
217s Starting 2 pkgProblemResolver with broken count: 0
217s Done
218s Solving dependencies...
219s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
220s autopkgtest [14:59:42]: rebooting testbed after setup commands that affected boot
242s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
250s autopkgtest [15:00:12]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
253s autopkgtest [15:00:15]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyvcf
258s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-11build1 (dsc) [2402 B]
258s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-11build1 (tar) [936 kB]
258s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyvcf 0.6.8+git20170215.476169c-11build1 (diff) [10.8 kB]
259s gpgv: Signature made Tue Mar  4 16:18:19 2025 UTC
259s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
259s gpgv: Can't check signature: No public key
259s dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11build1.dsc: no acceptable signature found
259s autopkgtest [15:00:21]: testing package python-pyvcf version 0.6.8+git20170215.476169c-11build1
259s autopkgtest [15:00:21]: build not needed
260s autopkgtest [15:00:22]: test pybuild-autopkgtest: preparing testbed
260s Reading package lists...
261s Building dependency tree...
261s Reading state information...
261s Starting pkgProblemResolver with broken count: 0
261s Starting 2 pkgProblemResolver with broken count: 0
261s Done
262s The following NEW packages will be installed:
262s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
262s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit
262s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
262s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
262s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
262s   libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl libdeflate0
262s   libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgomp1
262s   libhts3t64 libhtscodecs2 libhwasan0 libisl23 libitm1 libjs-jquery
262s   libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libpython3-all-dev
262s   libpython3-dev libpython3.13-dev libstdc++-14-dev libtool libtsan2 libubsan1
262s   m4 po-debconf pybuild-plugin-autopkgtest python-pyvcf-examples python3-all
262s   python3-all-dev python3-dev python3-iniconfig python3-packaging
262s   python3-pluggy python3-pysam python3-pytest python3-vcf python3.13-dev pyvcf
262s   zlib1g-dev
262s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
262s Need to get 80.1 MB of archives.
262s After this operation, 302 MB of additional disk space will be used.
262s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-7 [244 kB]
263s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3ubuntu1 [383 kB]
263s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
263s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.17-3ubuntu1 [572 kB]
264s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.23.1-1 [619 kB]
265s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
266s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
266s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
280s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
280s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
280s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
280s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
280s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
280s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
280s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
284s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
286s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
289s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
290s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
293s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
296s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
322s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
323s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
323s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
323s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
326s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
341s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
341s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
341s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
341s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
341s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu2 [2436 kB]
344s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
344s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.5.4-4 [168 kB]
344s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
345s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
345s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
345s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
345s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-2 [46.1 kB]
345s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
345s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.23.1-1 [998 kB]
346s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
346s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
346s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.24.1ubuntu2 [895 kB]
347s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20250308 [118 kB]
347s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
348s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.4-1 [129 kB]
348s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB]
348s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB]
348s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
349s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
349s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB]
349s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
350s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.2-2 [5399 kB]
357s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-dev arm64 3.13.2-2 [10.7 kB]
357s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-all-dev arm64 3.13.2-2 [910 B]
357s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20250308 [1744 B]
357s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-pyvcf-examples all 0.6.8+git20170215.476169c-11build1 [935 kB]
358s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.2-2 [886 B]
358s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.2-2 [509 kB]
358s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dev arm64 3.13.2-2 [26.7 kB]
358s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all-dev arm64 3.13.2-2 [914 B]
358s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
358s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB]
359s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
359s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB]
364s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB]
364s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-vcf arm64 0.6.8+git20170215.476169c-11build1 [51.9 kB]
364s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 pyvcf all 0.6.8+git20170215.476169c-11build1 [7762 B]
365s Fetched 80.1 MB in 1min 42s (789 kB/s)
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365s Preparing to unpack .../00-m4_1.4.19-7_arm64.deb ...
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368s Selecting previously unselected package libstdc++-14-dev:arm64.
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370s Selecting previously unselected package python-pyvcf-examples.
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371s Selecting previously unselected package python3-iniconfig.
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371s Unpacking python3-pytest (8.3.5-1) ...
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371s Setting up libhtscodecs2:arm64 (1.6.1-2) ...
371s Setting up dh-python (6.20250308) ...
371s Setting up python3-iniconfig (1.1.1-2) ...
372s Setting up python-pyvcf-examples (0.6.8+git20170215.476169c-11build1) ...
372s Setting up libarchive-zip-perl (1.68-1) ...
372s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
372s Setting up libdeflate0:arm64 (1.23-1) ...
372s Setting up m4 (1.4.19-7) ...
372s Setting up python3-all (3.13.2-2) ...
372s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
372s Setting up autotools-dev (20220109.1) ...
372s Setting up python3-packaging (24.2-1) ...
372s Setting up libexpat1-dev:arm64 (2.6.4-1) ...
372s Setting up libmpc3:arm64 (1.3.1-1build2) ...
372s Setting up cython3 (3.0.11+dfsg-2ubuntu2) ...
373s Setting up autopoint (0.23.1-1) ...
373s Setting up autoconf (2.72-3ubuntu1) ...
373s Setting up python3-pluggy (1.5.0-1) ...
373s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
373s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
373s Setting up dwz (0.15-1build6) ...
373s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
373s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
373s Setting up debugedit (1:5.1-2) ...
373s Setting up libhts3t64:arm64 (1.21+ds-1) ...
373s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
373s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
373s Setting up libisl23:arm64 (0.27-1) ...
373s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
373s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
373s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
373s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
373s Setting up automake (1:1.17-3ubuntu1) ...
373s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
373s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
373s Setting up gettext (0.23.1-1) ...
373s Setting up python3-pysam (0.23.0+ds-1build1) ...
373s Setting up python3-pytest (8.3.5-1) ...
374s Setting up python3-vcf (0.6.8+git20170215.476169c-11build1) ...
374s Setting up intltool-debian (0.35.0+20060710.6) ...
374s Setting up libpython3.13-dev:arm64 (3.13.2-2) ...
374s Setting up libjs-sphinxdoc (8.1.3-4) ...
374s Setting up dh-strip-nondeterminism (1.14.1-2) ...
374s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
374s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
374s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
374s Setting up libpython3-dev:arm64 (3.13.2-2) ...
374s Setting up pyvcf (0.6.8+git20170215.476169c-11build1) ...
374s Setting up python3.13-dev (3.13.2-2) ...
374s Setting up po-debconf (1.0.21+nmu1) ...
374s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
374s Setting up libpython3-all-dev:arm64 (3.13.2-2) ...
374s Setting up python3-dev (3.13.2-2) ...
374s Setting up cpp-14 (14.2.0-17ubuntu3) ...
374s Setting up cpp (4:14.2.0-1ubuntu1) ...
374s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
374s Setting up python3-all-dev (3.13.2-2) ...
374s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
374s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
374s Setting up gcc-14 (14.2.0-17ubuntu3) ...
374s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
374s Setting up g++-14 (14.2.0-17ubuntu3) ...
374s Setting up libtool (2.5.4-4) ...
374s Setting up gcc (4:14.2.0-1ubuntu1) ...
374s Setting up dh-autoreconf (20) ...
374s Setting up g++ (4:14.2.0-1ubuntu1) ...
374s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
374s Setting up build-essential (12.10ubuntu1) ...
374s Setting up debhelper (13.24.1ubuntu2) ...
374s Setting up pybuild-plugin-autopkgtest (6.20250308) ...
374s Processing triggers for install-info (7.1.1-1) ...
374s Processing triggers for libc-bin (2.41-1ubuntu2) ...
374s Processing triggers for man-db (2.13.0-1) ...
378s autopkgtest [15:02:20]: test pybuild-autopkgtest: pybuild-autopkgtest
378s autopkgtest [15:02:20]: test pybuild-autopkgtest: [-----------------------
378s pybuild-autopkgtest
378s I: pybuild pybuild:308: mkdir /tmp/autopkgtest.lBHQHT/autopkgtest_tmp/build/vcf; cp -r /tmp/autopkgtest.lBHQHT/build.148/src/vcf/test /tmp/autopkgtest.lBHQHT/autopkgtest_tmp/build/vcf/
378s I: pybuild base:311: cd /tmp/autopkgtest.lBHQHT/autopkgtest_tmp/build; python3.13 -m pytest 
379s ============================= test session starts ==============================
379s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0
379s rootdir: /tmp/autopkgtest.lBHQHT/autopkgtest_tmp/build
379s plugins: typeguard-4.4.2
379s collected 104 items
379s 
382s vcf/test/test_vcf.py ................................................... [ 49%]
382s ........................................ss.ss........                    [100%]
382s 
382s ======================== 100 passed, 4 skipped in 2.90s ========================
382s autopkgtest [15:02:24]: test pybuild-autopkgtest: -----------------------]
383s pybuild-autopkgtest  PASS
383s autopkgtest [15:02:25]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
383s autopkgtest [15:02:25]: @@@@@@@@@@@@@@@@@@@@ summary
383s pybuild-autopkgtest  PASS
401s nova [W] Using flock in prodstack6-arm64
401s Creating nova instance adt-plucky-arm64-python-pyvcf-20250315-145602-juju-7f2275-prod-proposed-migration-environment-2-3b5486d5-135e-40bb-8caa-4d1deb5565ba from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
401s nova [W] Timed out waiting for d0c2a803-dfed-43ad-8ba5-b5b3843800fa to get deleted.