0s autopkgtest [10:49:45]: starting date and time: 2024-11-13 10:49:45+0000 0s autopkgtest [10:49:45]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [10:49:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3g95_mar/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pynndescent --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-42.secgroup --name adt-plucky-arm64-python-pynndescent-20241113-104945-juju-7f2275-prod-proposed-migration-environment-20-11b74a1b-ed64-4f2c-92bf-be951193ef1e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [10:51:10]: testbed dpkg architecture: arm64 86s autopkgtest [10:51:11]: testbed apt version: 2.9.8 86s autopkgtest [10:51:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 89s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 90s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 90s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 90s Fetched 1794 kB in 1s (1771 kB/s) 90s Reading package lists... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Calculating upgrade... 96s The following NEW packages will be installed: 96s python3.13-gdbm 96s The following packages will be upgraded: 96s libpython3-stdlib python3 python3-gdbm python3-minimal 97s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 101 kB of archives. 97s After this operation, 141 kB of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 97s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 97s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 97s Fetched 101 kB in 0s (269 kB/s) 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 98s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 98s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 98s Setting up python3-minimal (3.12.7-1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 98s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 98s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 98s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 98s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 98s Selecting previously unselected package python3.13-gdbm. 98s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 98s Unpacking python3.13-gdbm (3.13.0-2) ... 98s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 98s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 98s Setting up python3.13-gdbm (3.13.0-2) ... 98s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 98s Setting up python3 (3.12.7-1) ... 98s Setting up python3-gdbm:arm64 (3.12.7-1) ... 98s Processing triggers for man-db (2.12.1-3) ... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 103s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [10:51:33]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 108s autopkgtest [10:51:33]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pynndescent 110s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (dsc) [2465 B] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (tar) [2797 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pynndescent 0.5.11-1 (diff) [5340 B] 110s gpgv: Signature made Fri May 31 23:06:56 2024 UTC 110s gpgv: using RSA key A62D2CFBD50B9B5BF360D54B159EB5C4EFC8774C 110s gpgv: Can't check signature: No public key 110s dpkg-source: warning: cannot verify inline signature for ./python-pynndescent_0.5.11-1.dsc: no acceptable signature found 110s autopkgtest [10:51:35]: testing package python-pynndescent version 0.5.11-1 111s autopkgtest [10:51:36]: build not needed 113s autopkgtest [10:51:38]: test run-unit-test: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s The following additional packages will be installed: 120s libblas3 libgfortran5 libgomp1 libhwloc15 liblapack3 liblbfgsb0 libllvm14t64 120s libpfm4 libpython3.13-minimal libpython3.13-stdlib libtbb12 libtbbbind-2-5 120s libtbbmalloc2 llvm-14 llvm-14-linker-tools llvm-14-runtime python3-all 120s python3-decorator python3-iniconfig python3-joblib python3-llvmlite 120s python3-numba python3-numpy python3-packaging python3-pluggy 120s python3-pynndescent python3-pytest python3-scipy python3-sklearn 120s python3-sklearn-lib python3-threadpoolctl python3.13 python3.13-minimal 120s Suggested packages: 120s llvm-14-doc python-joblib-doc llvmlite-doc gcc gfortran python-numpy-doc 120s python3-dev python-scipy-doc python3-dap python-sklearn-doc ipython3 120s python3.13-venv python3.13-doc binfmt-support 120s Recommended packages: 120s libhwloc-plugins llvm-14-dev python3-simplejson python3-psutil numba-doc 120s python3-pip g++ | c++-compiler python3-pil python3-matplotlib 120s The following NEW packages will be installed: 120s autopkgtest-satdep libblas3 libgfortran5 libgomp1 libhwloc15 liblapack3 120s liblbfgsb0 libllvm14t64 libpfm4 libpython3.13-minimal libpython3.13-stdlib 120s libtbb12 libtbbbind-2-5 libtbbmalloc2 llvm-14 llvm-14-linker-tools 120s llvm-14-runtime python3-all python3-decorator python3-iniconfig 120s python3-joblib python3-llvmlite python3-numba python3-numpy 120s python3-packaging python3-pluggy python3-pynndescent python3-pytest 120s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 120s python3.13 python3.13-minimal 120s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 73.6 MB/73.6 MB of archives. 120s After this operation, 327 MB of additional disk space will be used. 120s Get:1 /tmp/autopkgtest.WaQ1Gz/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 121s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 121s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 121s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 121s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 121s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 121s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 121s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 121s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 121s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm14t64 arm64 1:14.0.6-20 [22.6 MB] 122s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 122s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2021.12.0-1ubuntu2 [38.5 kB] 122s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2021.12.0-1ubuntu2 [14.9 kB] 122s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2021.12.0-1ubuntu2 [68.1 kB] 122s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 llvm-14-runtime arm64 1:14.0.6-20 [454 kB] 122s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 llvm-14-linker-tools arm64 1:14.0.6-20 [1230 kB] 122s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpfm4 arm64 4.13.0+git83-g91970fe-1 [71.9 kB] 122s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 llvm-14 arm64 1:14.0.6-20 [11.6 MB] 122s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 122s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 122s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 122s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 122s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB] 122s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-llvmlite arm64 0.42.0-1build2 [163 kB] 122s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 123s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 123s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-numba arm64 0.59.1+dfsg-1 [1774 kB] 123s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 123s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 123s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 123s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3806 kB] 123s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 123s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pynndescent arm64 0.5.11-1 [43.7 kB] 123s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 124s Fetched 73.6 MB in 3s (26.8 MB/s) 124s Selecting previously unselected package libpython3.13-minimal:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 124s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 124s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 124s Selecting previously unselected package python3.13-minimal. 124s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 124s Unpacking python3.13-minimal (3.13.0-2) ... 124s Selecting previously unselected package libblas3:arm64. 124s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ... 124s Unpacking libblas3:arm64 (3.12.0-3build2) ... 124s Selecting previously unselected package libgfortran5:arm64. 124s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libgomp1:arm64. 124s Preparing to unpack .../04-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libhwloc15:arm64. 124s Preparing to unpack .../05-libhwloc15_2.11.2-1_arm64.deb ... 124s Unpacking libhwloc15:arm64 (2.11.2-1) ... 124s Selecting previously unselected package liblapack3:arm64. 124s Preparing to unpack .../06-liblapack3_3.12.0-3build2_arm64.deb ... 124s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 124s Selecting previously unselected package liblbfgsb0:arm64. 124s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 124s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 124s Selecting previously unselected package libllvm14t64:arm64. 124s Preparing to unpack .../08-libllvm14t64_1%3a14.0.6-20_arm64.deb ... 124s Unpacking libllvm14t64:arm64 (1:14.0.6-20) ... 125s Selecting previously unselected package libpython3.13-stdlib:arm64. 125s Preparing to unpack .../09-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 125s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 125s Selecting previously unselected package libtbbmalloc2:arm64. 125s Preparing to unpack .../10-libtbbmalloc2_2021.12.0-1ubuntu2_arm64.deb ... 125s Unpacking libtbbmalloc2:arm64 (2021.12.0-1ubuntu2) ... 125s Selecting previously unselected package libtbbbind-2-5:arm64. 125s Preparing to unpack .../11-libtbbbind-2-5_2021.12.0-1ubuntu2_arm64.deb ... 125s Unpacking libtbbbind-2-5:arm64 (2021.12.0-1ubuntu2) ... 125s Selecting previously unselected package libtbb12:arm64. 125s Preparing to unpack .../12-libtbb12_2021.12.0-1ubuntu2_arm64.deb ... 125s Unpacking libtbb12:arm64 (2021.12.0-1ubuntu2) ... 125s Selecting previously unselected package llvm-14-runtime. 125s Preparing to unpack .../13-llvm-14-runtime_1%3a14.0.6-20_arm64.deb ... 125s Unpacking llvm-14-runtime (1:14.0.6-20) ... 125s Selecting previously unselected package llvm-14-linker-tools. 125s Preparing to unpack .../14-llvm-14-linker-tools_1%3a14.0.6-20_arm64.deb ... 125s Unpacking llvm-14-linker-tools (1:14.0.6-20) ... 125s Selecting previously unselected package libpfm4:arm64. 125s Preparing to unpack .../15-libpfm4_4.13.0+git83-g91970fe-1_arm64.deb ... 125s Unpacking libpfm4:arm64 (4.13.0+git83-g91970fe-1) ... 125s Selecting previously unselected package llvm-14. 125s Preparing to unpack .../16-llvm-14_1%3a14.0.6-20_arm64.deb ... 125s Unpacking llvm-14 (1:14.0.6-20) ... 125s Selecting previously unselected package python3.13. 125s Preparing to unpack .../17-python3.13_3.13.0-2_arm64.deb ... 125s Unpacking python3.13 (3.13.0-2) ... 125s Selecting previously unselected package python3-all. 126s Preparing to unpack .../18-python3-all_3.12.7-1_arm64.deb ... 126s Unpacking python3-all (3.12.7-1) ... 126s Selecting previously unselected package python3-decorator. 126s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 126s Unpacking python3-decorator (5.1.1-5) ... 126s Selecting previously unselected package python3-iniconfig. 126s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 126s Unpacking python3-iniconfig (1.1.1-2) ... 126s Selecting previously unselected package python3-joblib. 126s Preparing to unpack .../21-python3-joblib_1.3.2-5_all.deb ... 126s Unpacking python3-joblib (1.3.2-5) ... 126s Selecting previously unselected package python3-llvmlite. 126s Preparing to unpack .../22-python3-llvmlite_0.42.0-1build2_arm64.deb ... 126s Unpacking python3-llvmlite (0.42.0-1build2) ... 126s Selecting previously unselected package python3-numpy. 126s Preparing to unpack .../23-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 126s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 126s Selecting previously unselected package python3-scipy. 126s Preparing to unpack .../24-python3-scipy_1.13.1-5_arm64.deb ... 126s Unpacking python3-scipy (1.13.1-5) ... 126s Selecting previously unselected package python3-numba. 126s Preparing to unpack .../25-python3-numba_0.59.1+dfsg-1_arm64.deb ... 126s Unpacking python3-numba (0.59.1+dfsg-1) ... 127s Selecting previously unselected package python3-packaging. 127s Preparing to unpack .../26-python3-packaging_24.1-1_all.deb ... 127s Unpacking python3-packaging (24.1-1) ... 127s Selecting previously unselected package python3-pluggy. 127s Preparing to unpack .../27-python3-pluggy_1.5.0-1_all.deb ... 127s Unpacking python3-pluggy (1.5.0-1) ... 127s Selecting previously unselected package python3-threadpoolctl. 127s Preparing to unpack .../28-python3-threadpoolctl_3.1.0-1_all.deb ... 127s Unpacking python3-threadpoolctl (3.1.0-1) ... 127s Selecting previously unselected package python3-sklearn-lib:arm64. 127s Preparing to unpack .../29-python3-sklearn-lib_1.4.2+dfsg-6_arm64.deb ... 127s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... 127s Selecting previously unselected package python3-sklearn. 127s Preparing to unpack .../30-python3-sklearn_1.4.2+dfsg-6_all.deb ... 127s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 127s Selecting previously unselected package python3-pynndescent. 127s Preparing to unpack .../31-python3-pynndescent_0.5.11-1_arm64.deb ... 127s Unpacking python3-pynndescent (0.5.11-1) ... 127s Selecting previously unselected package python3-pytest. 127s Preparing to unpack .../32-python3-pytest_8.3.3-1_all.deb ... 127s Unpacking python3-pytest (8.3.3-1) ... 127s Selecting previously unselected package autopkgtest-satdep. 127s Preparing to unpack .../33-1-autopkgtest-satdep.deb ... 127s Unpacking autopkgtest-satdep (0) ... 127s Setting up python3-iniconfig (1.1.1-2) ... 128s Setting up libtbbmalloc2:arm64 (2021.12.0-1ubuntu2) ... 128s Setting up python3-joblib (1.3.2-5) ... 128s Setting up python3-threadpoolctl (3.1.0-1) ... 128s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 128s Setting up python3-decorator (5.1.1-5) ... 129s Setting up libblas3:arm64 (3.12.0-3build2) ... 129s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 129s Setting up python3-packaging (24.1-1) ... 129s Setting up libpfm4:arm64 (4.13.0+git83-g91970fe-1) ... 129s Setting up libhwloc15:arm64 (2.11.2-1) ... 129s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 129s Setting up libllvm14t64:arm64 (1:14.0.6-20) ... 129s Setting up python3-pluggy (1.5.0-1) ... 129s Setting up python3.13-minimal (3.13.0-2) ... 130s Setting up llvm-14-linker-tools (1:14.0.6-20) ... 130s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 130s Setting up liblapack3:arm64 (3.12.0-3build2) ... 130s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 130s Setting up python3.13 (3.13.0-2) ... 131s Setting up python3-pytest (8.3.3-1) ... 132s Setting up python3-all (3.12.7-1) ... 132s Setting up libtbbbind-2-5:arm64 (2021.12.0-1ubuntu2) ... 132s Setting up llvm-14-runtime (1:14.0.6-20) ... 132s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 136s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 136s Setting up llvm-14 (1:14.0.6-20) ... 136s Setting up python3-scipy (1.13.1-5) ... 144s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... 144s Setting up libtbb12:arm64 (2021.12.0-1ubuntu2) ... 144s Setting up python3-llvmlite (0.42.0-1build2) ... 145s Setting up python3-sklearn (1.4.2+dfsg-6) ... 149s Setting up python3-numba (0.59.1+dfsg-1) ... 149s update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode 155s Setting up python3-pynndescent (0.5.11-1) ... 155s Setting up autopkgtest-satdep (0) ... 155s Processing triggers for systemd (256.5-2ubuntu4) ... 156s Processing triggers for man-db (2.12.1-3) ... 156s Processing triggers for libc-bin (2.40-1ubuntu3) ... 160s (Reading database ... 85390 files and directories currently installed.) 160s Removing autopkgtest-satdep (0) ... 161s autopkgtest [10:52:26]: test run-unit-test: [----------------------- 161s Testing with python3.13: 161s ImportError while loading conftest '/tmp/autopkgtest.WaQ1Gz/build.IlO/src/pynndescent/tests/conftest.py'. 161s ../build.IlO/src/pynndescent/__init__.py:3: in 161s import numba 161s /usr/lib/python3/dist-packages/numba/__init__.py:56: in 161s _ensure_critical_deps() 161s /usr/lib/python3/dist-packages/numba/__init__.py:34: in _ensure_critical_deps 161s import numpy as np 161s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 161s raise ImportError(msg) from e 161s E ImportError: Error importing numpy: you should not try to import numpy from 161s E its source directory; please exit the numpy source tree, and relaunch 161s E your python interpreter from there. 162s autopkgtest [10:52:27]: test run-unit-test: -----------------------] 162s autopkgtest [10:52:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 162s run-unit-test FAIL non-zero exit status 4 162s autopkgtest [10:52:27]: @@@@@@@@@@@@@@@@@@@@ summary 162s run-unit-test FAIL non-zero exit status 4 170s nova [W] Skipping flock in bos03-arm64 170s Creating nova instance adt-plucky-arm64-python-pynndescent-20241113-104945-juju-7f2275-prod-proposed-migration-environment-20-11b74a1b-ed64-4f2c-92bf-be951193ef1e from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...