0s autopkgtest [16:12:14]: starting date and time: 2024-11-14 16:12:14+0000 0s autopkgtest [16:12:14]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:12:14]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0tmjycg6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-39.secgroup --name adt-plucky-arm64-python-pot-20241114-161214-juju-7f2275-prod-proposed-migration-environment-20-65bef8e3-d69a-4da4-b963-a6754cc598fc --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 79s autopkgtest [16:13:33]: testbed dpkg architecture: arm64 80s autopkgtest [16:13:34]: testbed apt version: 2.9.8 80s autopkgtest [16:13:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 81s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 81s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [966 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 81s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 81s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [138 kB] 81s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 81s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [724 kB] 81s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6012 B] 82s Fetched 2085 kB in 1s (2181 kB/s) 82s Reading package lists... 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Calculating upgrade... 86s The following packages will be upgraded: 86s pastebinit python3-systemd 86s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 61.6 kB of archives. 86s After this operation, 347 kB of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 pastebinit all 1.7.1-1 [14.9 kB] 86s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-systemd arm64 235-1build5 [46.7 kB] 87s Fetched 61.6 kB in 0s (179 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79925 files and directories currently installed.) 87s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 87s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 87s Preparing to unpack .../python3-systemd_235-1build5_arm64.deb ... 87s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 87s Setting up pastebinit (1.7.1-1) ... 87s Setting up python3-systemd (235-1build5) ... 87s Processing triggers for man-db (2.12.1-3) ... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [16:13:50]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 96s autopkgtest [16:13:50]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 99s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (dsc) [2114 B] 99s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (tar) [775 kB] 99s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (diff) [5972 B] 99s gpgv: Signature made Fri Jul 26 13:27:39 2024 UTC 99s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 99s gpgv: issuer "gspr@nonempty.org" 99s gpgv: Can't check signature: No public key 99s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.4+dfsg-1.dsc: no acceptable signature found 99s autopkgtest [16:13:52]: testing package python-pot version 0.9.4+dfsg-1 99s autopkgtest [16:13:53]: build not needed 100s autopkgtest [16:13:54]: test upstream.sh: preparing testbed 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 104s The following additional packages will be installed: 104s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 104s python3-decorator python3-iniconfig python3-joblib python3-numpy 104s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 104s python3-sklearn python3-sklearn-lib python3-threadpoolctl 104s Suggested packages: 104s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python-scipy-doc 104s python3-dap python-sklearn-doc ipython3 104s Recommended packages: 104s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 104s python3-matplotlib 104s The following NEW packages will be installed: 104s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 104s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 104s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 104s python3-sklearn python3-sklearn-lib python3-threadpoolctl 104s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 30.4 MB/30.4 MB of archives. 104s After this operation, 141 MB of additional disk space will be used. 104s Get:1 /tmp/autopkgtest.Tfw04C/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 105s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 105s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 105s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 105s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 105s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 105s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB] 105s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 105s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 105s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 105s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 106s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pot arm64 0.9.4+dfsg-1 [219 kB] 106s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 106s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 106s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3806 kB] 106s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 106s Fetched 30.4 MB in 2s (18.7 MB/s) 107s Selecting previously unselected package libblas3:arm64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79930 files and directories currently installed.) 107s Preparing to unpack .../00-libblas3_3.12.0-3build2_arm64.deb ... 107s Unpacking libblas3:arm64 (3.12.0-3build2) ... 107s Selecting previously unselected package libgfortran5:arm64. 107s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 107s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 107s Selecting previously unselected package libgomp1:arm64. 107s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 107s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 107s Selecting previously unselected package liblapack3:arm64. 107s Preparing to unpack .../03-liblapack3_3.12.0-3build2_arm64.deb ... 107s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 107s Selecting previously unselected package liblbfgsb0:arm64. 107s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 107s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 107s Selecting previously unselected package python3-all. 107s Preparing to unpack .../05-python3-all_3.12.6-0ubuntu1_arm64.deb ... 107s Unpacking python3-all (3.12.6-0ubuntu1) ... 107s Selecting previously unselected package python3-decorator. 107s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 107s Unpacking python3-decorator (5.1.1-5) ... 107s Selecting previously unselected package python3-iniconfig. 107s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 107s Unpacking python3-iniconfig (1.1.1-2) ... 107s Selecting previously unselected package python3-joblib. 107s Preparing to unpack .../08-python3-joblib_1.3.2-5_all.deb ... 107s Unpacking python3-joblib (1.3.2-5) ... 107s Selecting previously unselected package python3-numpy. 107s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 107s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 107s Selecting previously unselected package python3-packaging. 107s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 107s Unpacking python3-packaging (24.1-1) ... 107s Selecting previously unselected package python3-pluggy. 107s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 107s Unpacking python3-pluggy (1.5.0-1) ... 107s Selecting previously unselected package python3-scipy. 107s Preparing to unpack .../12-python3-scipy_1.13.1-5_arm64.deb ... 107s Unpacking python3-scipy (1.13.1-5) ... 108s Selecting previously unselected package python3-pot. 108s Preparing to unpack .../13-python3-pot_0.9.4+dfsg-1_arm64.deb ... 108s Unpacking python3-pot (0.9.4+dfsg-1) ... 108s Selecting previously unselected package python3-pytest. 108s Preparing to unpack .../14-python3-pytest_8.3.3-1_all.deb ... 108s Unpacking python3-pytest (8.3.3-1) ... 108s Selecting previously unselected package python3-threadpoolctl. 108s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 108s Unpacking python3-threadpoolctl (3.1.0-1) ... 108s Selecting previously unselected package python3-sklearn-lib:arm64. 108s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-6_arm64.deb ... 108s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... 108s Selecting previously unselected package python3-sklearn. 108s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-6_all.deb ... 108s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 108s Selecting previously unselected package autopkgtest-satdep. 108s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 108s Unpacking autopkgtest-satdep (0) ... 108s Setting up python3-iniconfig (1.1.1-2) ... 108s Setting up python3-joblib (1.3.2-5) ... 109s Setting up python3-threadpoolctl (3.1.0-1) ... 109s Setting up python3-all (3.12.6-0ubuntu1) ... 109s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 109s Setting up python3-decorator (5.1.1-5) ... 109s Setting up libblas3:arm64 (3.12.0-3build2) ... 109s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 109s Setting up python3-packaging (24.1-1) ... 109s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 109s Setting up python3-pluggy (1.5.0-1) ... 109s Setting up liblapack3:arm64 (3.12.0-3build2) ... 109s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 109s Setting up python3-pytest (8.3.3-1) ... 110s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 112s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 112s Setting up python3-scipy (1.13.1-5) ... 116s Setting up python3-pot (0.9.4+dfsg-1) ... 116s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... 116s Setting up python3-sklearn (1.4.2+dfsg-6) ... 118s Setting up autopkgtest-satdep (0) ... 118s Processing triggers for man-db (2.12.1-3) ... 118s Processing triggers for libc-bin (2.40-1ubuntu3) ... 122s (Reading database ... 83563 files and directories currently installed.) 122s Removing autopkgtest-satdep (0) ... 122s autopkgtest [16:14:16]: test upstream.sh: [----------------------- 123s Running tests with Python 3.12. 124s ============================= test session starts ============================== 124s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 124s rootdir: /tmp/autopkgtest.Tfw04C/autopkgtest_tmp 124s plugins: typeguard-4.4.1 124s collected 615 items 124s 131s test/gromov/test_bregman.py ..x..x............ [ 2%] 132s test/gromov/test_dictionary.py .... [ 3%] 132s test/gromov/test_estimators.py .. [ 3%] 133s test/gromov/test_gw.py ....s....x....... [ 6%] 133s test/gromov/test_lowrank.py .......... [ 8%] 134s test/gromov/test_quantized.py .... [ 8%] 135s test/gromov/test_semirelaxed.py .....x....... [ 11%] 136s test/test_1d_solver.py ...s..s...... [ 13%] 136s test/test_backend.py .......... [ 14%] 140s test/test_bregman.py ......................................sss.......... [ 23%] 145s .....................................ss....ss..ss..s....... [ 32%] 146s test/test_coot.py ......... [ 34%] 148s test/test_da.py .....................s... [ 38%] 148s test/test_dmmot.py .. [ 38%] 148s test/test_dr.py ssssss [ 39%] 148s test/test_factored.py .. [ 39%] 153s test/test_gaussian.py .................. [ 42%] 153s test/test_gnn.py ssss [ 43%] 155s test/test_lowrank.py ........... [ 45%] 155s test/test_mapping.py sss. [ 45%] 156s test/test_optim.py ...... [ 46%] 157s test/test_ot.py ....s..........s.. [ 49%] 159s test/test_partial.py ...... [ 50%] 159s test/test_plot.py ss [ 51%] 159s test/test_regpath.py .. [ 51%] 160s test/test_sliced.py ...........s..s............. [ 55%] 160s test/test_smooth.py ... [ 56%] 164s test/test_solvers.py .s................................................. [ 64%] 165s .........................ssssssss........ssssssss....................... [ 76%] 170s .ssssssss........ssssssss...ss............. [ 83%] 172s test/test_stochastic.py ......... [ 84%] 176s test/test_unbalanced.py ................................................ [ 92%] 187s ................ [ 95%] 187s test/test_utils.py ........................... [ 99%] 187s test/test_weak.py .. [100%] 187s 187s =============================== warnings summary =============================== 187s test/gromov/test_bregman.py: 12 warnings 187s test/gromov/test_estimators.py: 1 warning 187s test/test_bregman.py: 6 warnings 187s test/test_coot.py: 1 warning 187s test/test_da.py: 4 warnings 187s test/test_optim.py: 1 warning 187s test/test_partial.py: 1 warning 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 187s warnings.warn("Sinkhorn did not converge. You might want to " 187s 187s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 187s column_scaling = q / nx.sum(T, 0) 187s 187s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 187s T = nx.reshape(column_scaling, (1, -1)) * T 187s 187s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1357: RuntimeWarning: divide by zero encountered in divide 187s row_scaling = p / nx.sum(T, 1) 187s 187s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1358: RuntimeWarning: invalid value encountered in multiply 187s T = nx.reshape(row_scaling, (-1, 1)) * T 187s 187s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/backend.py:1153: RuntimeWarning: divide by zero encountered in log 187s return np.log(a) 187s 187s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 187s v = b / KtransposeU 187s 187s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 187s v = b / KtransposeU 187s 187s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 187s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 187s warnings.warn('Warning: numerical errors at iteration %d' % ii) 187s 187s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1050: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 187s warnings.warn("Solver failed to produce a transport plan. You might " 187s 187s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 187s warnings.warn("Solver failed to produce a transport plan. You might " 187s 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 187s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 187s 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 187s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 187s 187s test/gromov/test_estimators.py: 400 warnings 187s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 187s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 187s 187s test/gromov/test_estimators.py: 400 warnings 187s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 187s index[1] = generator.choice( 187s 187s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 187s /tmp/autopkgtest.Tfw04C/autopkgtest_tmp/test/gromov/test_gw.py:144: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 187s G = ot.gromov.gromov_wasserstein( 187s 187s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 187s /tmp/autopkgtest.Tfw04C/autopkgtest_tmp/test/gromov/test_gw.py:147: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 187s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 187s 187s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 187s /tmp/autopkgtest.Tfw04C/autopkgtest_tmp/test/gromov/test_gw.py:641: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 187s G, log = ot.gromov.fused_gromov_wasserstein( 187s 187s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 187s /tmp/autopkgtest.Tfw04C/autopkgtest_tmp/test/gromov/test_gw.py:644: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 187s Gb, logb = ot.gromov.fused_gromov_wasserstein( 187s 187s test/gromov/test_lowrank.py::test_lowrank_gromov_wasserstein_samples 187s test/gromov/test_lowrank.py::test_lowrank_wasserstein_samples_gamma_init[theory] 187s /usr/lib/python3/dist-packages/ot/gromov/_lowrank.py:270: UserWarning: Low Rank GW did not converge. You might want to increase the number of iterations `numItermax` 187s warnings.warn( 187s 187s test/gromov/test_quantized.py::test_quantized_gw[numpy] 187s test/gromov/test_quantized.py::test_quantized_gw[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:699: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 187s part1 = get_graph_partition(C1_aux, npart1, part_method, F1, alpha, random_state, nx) 187s 187s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 187s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 187s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 187s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 187s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 187s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:1097: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 187s part1, rep_indices1 = get_partition_and_representants_samples( 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 187s K = nx.exp(M / (-reg)) 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 187s K = nx.exp(M / (-reg)) 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 187s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 187s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 187s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 187s 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 187s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 187s 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 187s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 187s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 187s test/test_bregman.py::test_sinkhorn_warmstart 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 187s warnings.warn("Sinkhorn did not converge. You might want to " 187s 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 187s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 187s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 187s warnings.warn("Sinkhorn did not converge. You might want to " 187s 187s test/test_bregman.py::test_sinkhorn_empty 187s test/test_bregman.py::test_sinkhorn_variants[numpy] 187s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 187s test/test_bregman.py::test_sinkhorn_variants_log 187s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 187s warnings.warn("Sinkhorn did not converge. You might want to " 187s 187s test/test_coot.py::test_coot[numpy-False] 187s test/test_coot.py::test_coot[numpy-True] 187s test/test_coot.py::test_coot[numpy-1] 187s test/test_coot.py::test_coot[numpy-0] 187s test/test_coot.py::test_coot_warmstart[numpy] 187s test/test_coot.py::test_coot_log[numpy] 187s /usr/lib/python3/dist-packages/ot/lp/__init__.py:361: UserWarning: numItermax reached before optimality. Try to increase numItermax. 187s result_code_string = check_result(result_code) 187s 187s test/test_da.py::test_sinkhorn_transport_class[numpy] 187s /usr/lib/python3/dist-packages/ot/da.py:1159: UserWarning: The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous' 187s warnings.warn("The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous'") 187s 187s test/test_regpath.py: 232 warnings 187s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 187s M[-1, -1] = 1 / s 187s 187s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 187s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: divide by zero encountered in divide 187s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 187s 187s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 187s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: invalid value encountered in divide 187s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 187s 187s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 187s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 187s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 187s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 187s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 187s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 187s 187s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 187s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 187s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 187s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 187s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 187s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 187s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 187s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 187s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 187s 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 187s v = (b / Ktu) ** fi_2 187s 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 187s warnings.warn('Numerical errors at iteration %s' % i) 187s 187s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 187s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 187s 187s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 187s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 187s warnings.warn("The div parameter should be either equal to 'kl' or \ 187s 187s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 187s ===== 543 passed, 68 skipped, 4 xfailed, 1144 warnings in 63.39s (0:01:03) ===== 187s ********** 188s autopkgtest [16:15:22]: test upstream.sh: -----------------------] 188s autopkgtest [16:15:22]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 188s upstream.sh PASS 189s autopkgtest [16:15:23]: @@@@@@@@@@@@@@@@@@@@ summary 189s upstream.sh PASS 193s nova [W] Skipping flock in bos03-arm64 193s Creating nova instance adt-plucky-arm64-python-pot-20241114-161214-juju-7f2275-prod-proposed-migration-environment-20-65bef8e3-d69a-4da4-b963-a6754cc598fc from image adt/ubuntu-plucky-arm64-server-20241114.img (UUID 4472f5f7-859f-4441-9e8e-9550fb35f210)...