0s autopkgtest [10:40:51]: starting date and time: 2024-11-13 10:40:51+0000
  0s autopkgtest [10:40:51]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [10:40:51]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eow6qb5r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-nexusformat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-25.secgroup --name adt-plucky-arm64-python-nexusformat-20241113-104051-juju-7f2275-prod-proposed-migration-environment-15-09cedd4a-d44d-466a-b8ff-f9ee16f17fe8 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
112s autopkgtest [10:42:43]: testbed dpkg architecture: arm64
112s autopkgtest [10:42:43]: testbed apt version: 2.9.8
112s autopkgtest [10:42:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup
113s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
113s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
113s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
114s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
114s Fetched 1794 kB in 1s (1964 kB/s)
114s Reading package lists...
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
118s Calculating upgrade...
118s The following NEW packages will be installed:
118s   python3.13-gdbm
118s The following packages will be upgraded:
118s   libpython3-stdlib python3 python3-gdbm python3-minimal
118s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
118s Need to get 101 kB of archives.
118s After this operation, 141 kB of additional disk space will be used.
118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
119s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
119s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
119s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
119s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
119s Fetched 101 kB in 0s (289 kB/s)
119s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
119s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
119s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
119s Setting up python3-minimal (3.12.7-1) ...
119s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
120s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
120s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
120s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
120s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
120s Selecting previously unselected package python3.13-gdbm.
120s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
120s Unpacking python3.13-gdbm (3.13.0-2) ...
120s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
120s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
120s Setting up python3.13-gdbm (3.13.0-2) ...
120s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
120s Setting up python3 (3.12.7-1) ...
120s Setting up python3-gdbm:arm64 (3.12.7-1) ...
120s Processing triggers for man-db (2.12.1-3) ...
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
122s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
122s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
123s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
123s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
124s Reading package lists...
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s Calculating upgrade...
125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s autopkgtest [10:43:01]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
130s autopkgtest [10:43:01]: @@@@@@@@@@@@@@@@@@@@ apt-source python-nexusformat
132s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-nexusformat 1.0.6-3 (dsc) [2152 B]
132s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-nexusformat 1.0.6-3 (tar) [81.4 kB]
132s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-nexusformat 1.0.6-3 (diff) [2512 B]
132s gpgv: Signature made Mon Sep 23 19:33:46 2024 UTC
132s gpgv:                using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC
132s gpgv: Can't check signature: No public key
132s dpkg-source: warning: cannot verify inline signature for ./python-nexusformat_1.0.6-3.dsc: no acceptable signature found
133s autopkgtest [10:43:04]: testing package python-nexusformat version 1.0.6-3
133s autopkgtest [10:43:04]: build not needed
133s autopkgtest [10:43:04]: test command1: preparing testbed
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
135s Starting pkgProblemResolver with broken count: 0
136s Starting 2 pkgProblemResolver with broken count: 0
136s Done
136s The following additional packages will be installed:
136s   libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3
136s   liblbfgsb0 liblzf1 libsz2 python3-decorator python3-h5py python3-h5py-serial
136s   python3-hdf5plugin python3-iniconfig python3-nexusformat python3-numpy
136s   python3-packaging python3-pluggy python3-pytest python3-scipy
136s Suggested packages:
136s   python-h5py-doc gcc gfortran python-numpy-doc python3-dev python-scipy-doc
136s Recommended packages:
136s   hdf5-filter-plugin-blosc-serial hdf5-filter-plugin-bz2-serial
136s   hdf5-filter-plugin-lz4-serial hdf5-filter-plugin-zfp-serial hdf5-plugin-lzf
136s   g++ | c++-compiler python3-pil
136s The following NEW packages will be installed:
136s   autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64
136s   libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libsz2 python3-decorator
136s   python3-h5py python3-h5py-serial python3-hdf5plugin python3-iniconfig
136s   python3-nexusformat python3-numpy python3-packaging python3-pluggy
136s   python3-pytest python3-scipy
136s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
136s Need to get 25.7 MB/25.7 MB of archives.
136s After this operation, 107 MB of additional disk space will be used.
136s Get:1 /tmp/autopkgtest.19JLhJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B]
137s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
137s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
137s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
137s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
137s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
137s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
137s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
137s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
137s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
137s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
137s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
137s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB]
137s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
137s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdf5plugin all 4.0.1-3 [20.3 kB]
137s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
137s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
138s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nexusformat all 1.0.6-3 [62.0 kB]
138s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
138s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
138s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
138s Fetched 25.7 MB in 1s (19.6 MB/s)
138s Selecting previously unselected package libaec0:arm64.
138s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
138s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ...
138s Unpacking libaec0:arm64 (1.1.3-1) ...
138s Selecting previously unselected package libblas3:arm64.
138s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ...
138s Unpacking libblas3:arm64 (3.12.0-3build2) ...
138s Selecting previously unselected package libgfortran5:arm64.
138s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
138s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
138s Selecting previously unselected package libsz2:arm64.
138s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ...
138s Unpacking libsz2:arm64 (1.1.3-1) ...
138s Selecting previously unselected package libhdf5-103-1t64:arm64.
138s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
138s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
138s Selecting previously unselected package libhdf5-hl-100t64:arm64.
138s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ...
138s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
138s Selecting previously unselected package liblapack3:arm64.
138s Preparing to unpack .../06-liblapack3_3.12.0-3build2_arm64.deb ...
138s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
138s Selecting previously unselected package liblbfgsb0:arm64.
138s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
138s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
138s Selecting previously unselected package liblzf1:arm64.
138s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ...
138s Unpacking liblzf1:arm64 (3.6-4) ...
138s Selecting previously unselected package python3-decorator.
139s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ...
139s Unpacking python3-decorator (5.1.1-5) ...
139s Selecting previously unselected package python3-numpy.
139s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
139s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
139s Selecting previously unselected package python3-h5py-serial.
139s Preparing to unpack .../11-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ...
139s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ...
139s Selecting previously unselected package python3-h5py.
139s Preparing to unpack .../12-python3-h5py_3.11.0-5ubuntu1_all.deb ...
139s Unpacking python3-h5py (3.11.0-5ubuntu1) ...
139s Selecting previously unselected package python3-hdf5plugin.
139s Preparing to unpack .../13-python3-hdf5plugin_4.0.1-3_all.deb ...
139s Unpacking python3-hdf5plugin (4.0.1-3) ...
139s Selecting previously unselected package python3-iniconfig.
139s Preparing to unpack .../14-python3-iniconfig_1.1.1-2_all.deb ...
139s Unpacking python3-iniconfig (1.1.1-2) ...
139s Selecting previously unselected package python3-scipy.
139s Preparing to unpack .../15-python3-scipy_1.13.1-5_arm64.deb ...
139s Unpacking python3-scipy (1.13.1-5) ...
139s Selecting previously unselected package python3-nexusformat.
139s Preparing to unpack .../16-python3-nexusformat_1.0.6-3_all.deb ...
139s Unpacking python3-nexusformat (1.0.6-3) ...
139s Selecting previously unselected package python3-packaging.
139s Preparing to unpack .../17-python3-packaging_24.1-1_all.deb ...
139s Unpacking python3-packaging (24.1-1) ...
139s Selecting previously unselected package python3-pluggy.
139s Preparing to unpack .../18-python3-pluggy_1.5.0-1_all.deb ...
139s Unpacking python3-pluggy (1.5.0-1) ...
139s Selecting previously unselected package python3-pytest.
139s Preparing to unpack .../19-python3-pytest_8.3.3-1_all.deb ...
139s Unpacking python3-pytest (8.3.3-1) ...
140s Selecting previously unselected package autopkgtest-satdep.
140s Preparing to unpack .../20-1-autopkgtest-satdep.deb ...
140s Unpacking autopkgtest-satdep (0) ...
140s Setting up python3-iniconfig (1.1.1-2) ...
140s Setting up libaec0:arm64 (1.1.3-1) ...
140s Setting up python3-decorator (5.1.1-5) ...
140s Setting up libblas3:arm64 (3.12.0-3build2) ...
140s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
140s Setting up python3-packaging (24.1-1) ...
140s Setting up liblzf1:arm64 (3.6-4) ...
140s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
140s Setting up python3-pluggy (1.5.0-1) ...
140s Setting up libsz2:arm64 (1.1.3-1) ...
140s Setting up liblapack3:arm64 (3.12.0-3build2) ...
140s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
140s Setting up python3-pytest (8.3.3-1) ...
141s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
143s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
143s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
143s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
143s Setting up python3-scipy (1.13.1-5) ...
147s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
147s Setting up python3-h5py (3.11.0-5ubuntu1) ...
147s Setting up python3-hdf5plugin (4.0.1-3) ...
148s Setting up python3-nexusformat (1.0.6-3) ...
148s Setting up autopkgtest-satdep (0) ...
148s Processing triggers for man-db (2.12.1-3) ...
148s Processing triggers for libc-bin (2.40-1ubuntu3) ...
153s (Reading database ... 82632 files and directories currently installed.)
153s Removing autopkgtest-satdep (0) ...
154s autopkgtest [10:43:25]: test command1: set -efu ; for py in $(py3versions -r 2>/dev/null) ; do cp -r tests "$AUTOPKGTEST_TMP" || true ; cd "$AUTOPKGTEST_TMP" ; echo "Testing nexusformat with $py:" ; $py -m pytest --verbosity=2 ; done
154s autopkgtest [10:43:25]: test command1: [-----------------------
154s Testing nexusformat with python3.13:
154s bash: line 1: python3.13: command not found
155s autopkgtest [10:43:26]: test command1: -----------------------]
156s autopkgtest [10:43:27]: test command1:  - - - - - - - - - - results - - - - - - - - - -
156s command1             FAIL non-zero exit status 127
157s autopkgtest [10:43:28]: @@@@@@@@@@@@@@@@@@@@ summary
157s command1             FAIL non-zero exit status 127
173s nova [W] Skipping flock in bos03-arm64
174s Creating nova instance adt-plucky-arm64-python-nexusformat-20241113-104051-juju-7f2275-prod-proposed-migration-environment-15-09cedd4a-d44d-466a-b8ff-f9ee16f17fe8 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...