0s autopkgtest [10:39:00]: starting date and time: 2025-01-08 10:39:00+0000 0s autopkgtest [10:39:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [10:39:00]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.sez5zddx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-hdf5storage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-14.secgroup --name adt-plucky-arm64-python-hdf5storage-20250108-103900-juju-7f2275-prod-proposed-migration-environment-20-9b3d1e46-1be0-4a31-88e0-9a2585e1679e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [10:40:52]: testbed dpkg architecture: arm64 112s autopkgtest [10:40:52]: testbed apt version: 2.9.18 112s autopkgtest [10:40:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s autopkgtest [10:40:53]: testbed release detected to be: None 113s autopkgtest [10:40:53]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [818 kB] 114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB] 114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.3 kB] 114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 114s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [260 kB] 114s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB] 114s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [1011 kB] 114s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [22.8 kB] 115s Fetched 2398 kB in 1s (2429 kB/s) 115s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Calculating upgrade... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [10:40:58]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 120s Entering ResolveByKeep 121s 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Starting pkgProblemResolver with broken count: 0 122s Starting 2 pkgProblemResolver with broken count: 0 122s Done 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [10:41:06]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 126s autopkgtest [10:41:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-hdf5storage 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (dsc) [2495 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (tar) [92.3 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (diff) [5776 B] 128s gpgv: Signature made Fri Sep 13 12:33:57 2024 UTC 128s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 128s gpgv: issuer "tchet@debian.org" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./python-hdf5storage_0.1.19-2.dsc: no acceptable signature found 128s autopkgtest [10:41:08]: testing package python-hdf5storage version 0.1.19-2 128s autopkgtest [10:41:08]: build not needed 129s autopkgtest [10:41:09]: test command1: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 130s The following NEW packages will be installed: 130s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 130s liblbfgsb0 liblzf1 libsz2 python3-decorator python3-h5py python3-h5py-serial 130s python3-hdf5storage python3-iniconfig python3-numpy python3-packaging 130s python3-pluggy python3-pytest python3-scipy 131s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 29.7 MB of archives. 131s After this operation, 158 MB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 131s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 131s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-12ubuntu1 [437 kB] 131s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 131s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-5ubuntu1 [1210 kB] 131s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-5ubuntu1 [56.9 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 131s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 131s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 131s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [4153 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu3 [1452 kB] 131s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-8ubuntu3 [7982 B] 131s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdf5storage all 0.1.19-2 [44.9 kB] 131s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 131s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 131s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 131s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 131s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-3ubuntu1 [19.5 MB] 132s Fetched 29.7 MB in 1s (20.6 MB/s) 132s Selecting previously unselected package libaec0:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80185 files and directories currently installed.) 133s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ... 133s Unpacking libaec0:arm64 (1.1.3-1) ... 133s Selecting previously unselected package libblas3:arm64. 133s Preparing to unpack .../01-libblas3_3.12.0-4_arm64.deb ... 133s Unpacking libblas3:arm64 (3.12.0-4) ... 133s Selecting previously unselected package libgfortran5:arm64. 133s Preparing to unpack .../02-libgfortran5_14.2.0-12ubuntu1_arm64.deb ... 133s Unpacking libgfortran5:arm64 (14.2.0-12ubuntu1) ... 133s Selecting previously unselected package libsz2:arm64. 133s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ... 133s Unpacking libsz2:arm64 (1.1.3-1) ... 133s Selecting previously unselected package libhdf5-103-1t64:arm64. 133s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_arm64.deb ... 133s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 133s Selecting previously unselected package libhdf5-hl-100t64:arm64. 133s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_arm64.deb ... 133s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 133s Selecting previously unselected package liblapack3:arm64. 133s Preparing to unpack .../06-liblapack3_3.12.0-4_arm64.deb ... 133s Unpacking liblapack3:arm64 (3.12.0-4) ... 133s Selecting previously unselected package liblbfgsb0:arm64. 133s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 133s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 133s Selecting previously unselected package liblzf1:arm64. 133s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ... 133s Unpacking liblzf1:arm64 (3.6-4) ... 133s Selecting previously unselected package python3-decorator. 133s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 133s Unpacking python3-decorator (5.1.1-5) ... 133s Selecting previously unselected package python3-numpy. 133s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... 133s Unpacking python3-numpy (1:1.26.4+ds-12) ... 133s Selecting previously unselected package python3-h5py-serial. 133s Preparing to unpack .../11-python3-h5py-serial_3.11.0-8ubuntu3_arm64.deb ... 133s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 133s Selecting previously unselected package python3-h5py. 133s Preparing to unpack .../12-python3-h5py_3.11.0-8ubuntu3_all.deb ... 133s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 133s Selecting previously unselected package python3-hdf5storage. 133s Preparing to unpack .../13-python3-hdf5storage_0.1.19-2_all.deb ... 133s Unpacking python3-hdf5storage (0.1.19-2) ... 133s Selecting previously unselected package python3-iniconfig. 133s Preparing to unpack .../14-python3-iniconfig_1.1.1-2_all.deb ... 133s Unpacking python3-iniconfig (1.1.1-2) ... 133s Selecting previously unselected package python3-packaging. 133s Preparing to unpack .../15-python3-packaging_24.2-1_all.deb ... 133s Unpacking python3-packaging (24.2-1) ... 133s Selecting previously unselected package python3-pluggy. 133s Preparing to unpack .../16-python3-pluggy_1.5.0-1_all.deb ... 133s Unpacking python3-pluggy (1.5.0-1) ... 133s Selecting previously unselected package python3-pytest. 133s Preparing to unpack .../17-python3-pytest_8.3.3-1_all.deb ... 133s Unpacking python3-pytest (8.3.3-1) ... 133s Selecting previously unselected package python3-scipy. 134s Preparing to unpack .../18-python3-scipy_1.14.1-3ubuntu1_arm64.deb ... 134s Unpacking python3-scipy (1.14.1-3ubuntu1) ... 134s Setting up python3-iniconfig (1.1.1-2) ... 134s Setting up libaec0:arm64 (1.1.3-1) ... 134s Setting up python3-decorator (5.1.1-5) ... 134s Setting up libblas3:arm64 (3.12.0-4) ... 134s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 134s Setting up python3-packaging (24.2-1) ... 135s Setting up liblzf1:arm64 (3.6-4) ... 135s Setting up libgfortran5:arm64 (14.2.0-12ubuntu1) ... 135s Setting up python3-pluggy (1.5.0-1) ... 135s Setting up libsz2:arm64 (1.1.3-1) ... 135s Setting up liblapack3:arm64 (3.12.0-4) ... 135s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 135s Setting up python3-pytest (8.3.3-1) ... 135s Setting up python3-numpy (1:1.26.4+ds-12) ... 137s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 138s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 138s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 138s Setting up python3-scipy (1.14.1-3ubuntu1) ... 141s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 141s Setting up python3-h5py (3.11.0-8ubuntu3) ... 141s Setting up python3-hdf5storage (0.1.19-2) ... 142s Processing triggers for man-db (2.13.0-1) ... 142s Processing triggers for libc-bin (2.40-4ubuntu1) ... 143s autopkgtest [10:41:23]: test command1: cp -a ./tests $AUTOPKGTEST_TMP; cd $AUTOPKGTEST_TMP; python3 -m pytest -v tests 143s autopkgtest [10:41:23]: test command1: [----------------------- 144s ============================= test session starts ============================== 144s platform linux -- Python 3.12.8, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 144s cachedir: .pytest_cache 144s rootdir: /tmp/autopkgtest.mxzHkD/autopkgtest_tmp 144s plugins: typeguard-4.4.1 144s collecting ... collected 11 items 144s 144s tests/test_hdf5_filters.py::test_read_filtered_data XFAIL ([NOTRUN] ...) [ 9%] 144s tests/test_hdf5_filters.py::test_write_filtered_data XFAIL ([NOTRUN]...) [ 18%] 145s tests/test_hdf5_filters.py::test_uncompressed_write_filtered_data XFAIL [ 27%] 145s tests/test_matlab_compatibility.py::test_read_from_matlab XFAIL ([NO...) [ 36%] 145s tests/test_matlab_compatibility.py::test_to_matlab_back XFAIL ([NOTR...) [ 45%] 145s tests/test_multi_io.py::test_multi_write PASSED [ 54%] 145s tests/test_multi_io.py::test_multi_read PASSED [ 63%] 145s tests/test_ndarray_O_field.py::test_O_field_compound PASSED [ 72%] 145s tests/test_ndarray_O_field.py::test_object_field_group PASSED [ 81%] 145s tests/test_ndarray_O_field.py::test_O_and_object_field_group PASSED [ 90%] 145s tests/test_string_utf16_conversion.py::test_conv_utf16 XFAIL ([NOTRU...) [100%] 145s 145s =============================== warnings summary =============================== 145s ../../../usr/lib/python3/dist-packages/hdf5storage/utilities.py:44 145s /usr/lib/python3/dist-packages/hdf5storage/utilities.py:44: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 145s from pkg_resources import parse_version 145s 145s tests/test_hdf5_filters.py:215 145s tests/test_hdf5_filters.py:215: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_read_filtered_data will be ignored 145s def test_read_filtered_data(): 145s 145s tests/test_hdf5_filters.py:233 145s tests/test_hdf5_filters.py:233: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_write_filtered_data will be ignored 145s def test_write_filtered_data(): 145s 145s tests/test_hdf5_filters.py:251 145s tests/test_hdf5_filters.py:251: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_uncompressed_write_filtered_data will be ignored 145s def test_uncompressed_write_filtered_data(): 145s 145s tests/test_matlab_compatibility.py:85 145s tests/test_matlab_compatibility.py:85: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_read_from_matlab will be ignored 145s def test_read_from_matlab(): 145s 145s tests/test_matlab_compatibility.py:93 145s tests/test_matlab_compatibility.py:93: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_to_matlab_back will be ignored 145s def test_to_matlab_back(): 145s 145s tests/test_string_utf16_conversion.py:69 145s tests/test_string_utf16_conversion.py:69: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_conv_utf16 will be ignored 145s def test_conv_utf16(): 145s 145s tests/test_write_readback.py:68 145s /tmp/autopkgtest.mxzHkD/autopkgtest_tmp/tests/test_write_readback.py:68: PytestCollectionWarning: cannot collect test class 'TestPythonMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 145s class TestPythonMatlabFormat(object): 145s 145s tests/test_write_readback.py:669 145s /tmp/autopkgtest.mxzHkD/autopkgtest_tmp/tests/test_write_readback.py:669: PytestCollectionWarning: cannot collect test class 'TestPythonFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 145s class TestPythonFormat(TestPythonMatlabFormat): 145s 145s tests/test_write_readback.py:702 145s /tmp/autopkgtest.mxzHkD/autopkgtest_tmp/tests/test_write_readback.py:702: PytestCollectionWarning: cannot collect test class 'TestNoneFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 145s class TestNoneFormat(TestPythonMatlabFormat): 145s 145s tests/test_write_readback.py:741 145s /tmp/autopkgtest.mxzHkD/autopkgtest_tmp/tests/test_write_readback.py:741: PytestCollectionWarning: cannot collect test class 'TestMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 145s class TestMatlabFormat(TestPythonMatlabFormat): 145s 145s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 145s ================== 5 passed, 6 xfailed, 11 warnings in 1.08s =================== 145s autopkgtest [10:41:25]: test command1: -----------------------] 146s autopkgtest [10:41:26]: test command1: - - - - - - - - - - results - - - - - - - - - - 146s command1 PASS 146s autopkgtest [10:41:26]: @@@@@@@@@@@@@@@@@@@@ summary 146s command1 PASS 163s nova [W] Using flock in prodstack6-arm64 163s Creating nova instance adt-plucky-arm64-python-hdf5storage-20250108-103900-juju-7f2275-prod-proposed-migration-environment-20-9b3d1e46-1be0-4a31-88e0-9a2585e1679e from image adt/ubuntu-plucky-arm64-server-20250108.img (UUID 053f5e9f-d810-4aac-9e57-cf8ac63865d2)... 163s nova [W] Timed out waiting for e1822555-67ce-446c-9931-9700fefc065a to get deleted.