0s autopkgtest [12:34:34]: starting date and time: 2025-02-19 12:34:34+0000 0s autopkgtest [12:34:34]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:34:34]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q6zdxt5g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-30.secgroup --name adt-plucky-arm64-python-h5netcdf-20250219-123433-juju-7f2275-prod-proposed-migration-environment-20-92c5e32b-0dc0-46eb-aa1d-08801fb43de7 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 125s autopkgtest [12:36:39]: testbed dpkg architecture: arm64 125s autopkgtest [12:36:39]: testbed apt version: 2.9.29 125s autopkgtest [12:36:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 125s autopkgtest [12:36:39]: testbed release detected to be: None 126s autopkgtest [12:36:40]: updating testbed package index (apt update) 127s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 127s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 127s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 127s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 127s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 127s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [93.3 kB] 127s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B] 127s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [686 kB] 127s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [11.2 kB] 128s Fetched 1752 kB in 1s (1745 kB/s) 129s Reading package lists... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s Calculating upgrade... 131s The following NEW packages will be installed: 131s libapt-pkg7.0 131s The following packages will be upgraded: 131s apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog 131s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 4842 kB of archives. 131s After this operation, 3409 kB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg7.0 arm64 2.9.30 [1023 kB] 132s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.30 [1364 kB] 132s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.30 [207 kB] 132s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB] 132s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit0 arm64 0.25.5-2ubuntu3 [280 kB] 132s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 rsyslog arm64 8.2412.0-2ubuntu1 [521 kB] 132s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.4+dfsg-1 [236 kB] 132s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.4+dfsg-1 [53.9 kB] 133s Preconfiguring packages ... 133s Fetched 4842 kB in 1s (5635 kB/s) 133s Selecting previously unselected package libapt-pkg7.0:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116620 files and directories currently installed.) 133s Preparing to unpack .../libapt-pkg7.0_2.9.30_arm64.deb ... 133s Unpacking libapt-pkg7.0:arm64 (2.9.30) ... 133s Setting up libapt-pkg7.0:arm64 (2.9.30) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 133s Preparing to unpack .../archives/apt_2.9.30_arm64.deb ... 134s Unpacking apt (2.9.30) over (2.9.29) ... 134s Setting up apt (2.9.30) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 135s Preparing to unpack .../0-apt-utils_2.9.30_arm64.deb ... 135s Unpacking apt-utils (2.9.30) over (2.9.29) ... 135s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_arm64.deb ... 135s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 135s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_arm64.deb ... 135s Unpacking libp11-kit0:arm64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 135s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_arm64.deb ... 135s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ... 135s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_arm64.deb ... 135s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 136s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_arm64.deb ... 136s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 136s Setting up apt-utils (2.9.30) ... 136s Setting up liblsof0 (4.99.4+dfsg-1) ... 136s Setting up iproute2 (6.13.0-1ubuntu1) ... 136s Setting up rsyslog (8.2412.0-2ubuntu1) ... 136s info: The user `syslog' is already a member of `adm'. 137s Setting up libp11-kit0:arm64 (0.25.5-2ubuntu3) ... 137s Setting up lsof (4.99.4+dfsg-1) ... 137s Processing triggers for man-db (2.13.0-1) ... 140s Processing triggers for libc-bin (2.40-4ubuntu1) ... 141s Reading package lists... 142s Building dependency tree... 142s Reading state information... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [12:36:57]: upgrading testbed (apt dist-upgrade and autopurge) 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 144s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 144s Starting 2 pkgProblemResolver with broken count: 0 144s Done 145s Entering ResolveByKeep 145s 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s autopkgtest [12:37:03]: rebooting testbed after setup commands that affected boot 184s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 191s autopkgtest [12:37:45]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 15:49:33 UTC 2025 193s autopkgtest [12:37:47]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (dsc) [2388 B] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (tar) [64.6 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.1-1 (diff) [5168 B] 197s gpgv: Signature made Sun Nov 24 22:23:34 2024 UTC 197s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 197s gpgv: Can't check signature: No public key 197s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.1-1.dsc: no acceptable signature found 197s autopkgtest [12:37:51]: testing package python-h5netcdf version 1.4.1-1 197s autopkgtest [12:37:51]: build not needed 198s autopkgtest [12:37:52]: test command1: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s Starting pkgProblemResolver with broken count: 0 200s Starting 2 pkgProblemResolver with broken count: 0 200s Done 201s The following NEW packages will be installed: 201s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 libjs-jquery 201s libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libnetcdf22 libsz2 201s python-h5netcdf-doc python3-all python3-cftime python3-h5netcdf python3-h5py 201s python3-h5py-serial python3-iniconfig python3-netcdf4 python3-numpy 201s python3-packaging python3-pluggy python3-pytest python3.12 201s python3.12-minimal 201s 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. 201s Need to get 15.3 MB of archives. 201s After this operation, 69.4 MB of additional disk space will be used. 201s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-minimal arm64 3.12.9-1 [2236 kB] 202s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12 arm64 3.12.9-1 [671 kB] 202s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 202s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 202s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB] 202s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 202s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 202s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 202s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 202s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 202s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 202s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 202s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 202s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 202s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-h5netcdf-doc all 1.4.1-1 [52.9 kB] 202s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.1-1~exp2 [894 B] 202s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [4148 kB] 202s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cftime arm64 1.6.4-1build2 [289 kB] 203s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.12.1-1 [1453 kB] 203s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.12.1-1 [7970 B] 203s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 203s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5netcdf all 1.4.1-1 [47.2 kB] 203s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 203s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-netcdf4 arm64 1.7.2-1build3 [797 kB] 203s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 203s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.4-1 [252 kB] 203s Fetched 15.3 MB in 1s (11.2 MB/s) 203s Selecting previously unselected package python3.12-minimal. 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116670 files and directories currently installed.) 204s Preparing to unpack .../00-python3.12-minimal_3.12.9-1_arm64.deb ... 204s Unpacking python3.12-minimal (3.12.9-1) ... 204s Selecting previously unselected package python3.12. 204s Preparing to unpack .../01-python3.12_3.12.9-1_arm64.deb ... 204s Unpacking python3.12 (3.12.9-1) ... 204s Selecting previously unselected package libaec0:arm64. 204s Preparing to unpack .../02-libaec0_1.1.3-1_arm64.deb ... 204s Unpacking libaec0:arm64 (1.1.3-1) ... 204s Selecting previously unselected package libblas3:arm64. 204s Preparing to unpack .../03-libblas3_3.12.1-2_arm64.deb ... 204s Unpacking libblas3:arm64 (3.12.1-2) ... 204s Selecting previously unselected package libgfortran5:arm64. 204s Preparing to unpack .../04-libgfortran5_15-20250213-1ubuntu1_arm64.deb ... 204s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ... 204s Selecting previously unselected package libsz2:arm64. 204s Preparing to unpack .../05-libsz2_1.1.3-1_arm64.deb ... 204s Unpacking libsz2:arm64 (1.1.3-1) ... 204s Selecting previously unselected package libhdf5-310:arm64. 204s Preparing to unpack .../06-libhdf5-310_1.14.5+repack-3_arm64.deb ... 204s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 204s Selecting previously unselected package libhdf5-hl-310:arm64. 204s Preparing to unpack .../07-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 204s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 204s Selecting previously unselected package libjs-jquery. 205s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 205s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 205s Selecting previously unselected package libjs-underscore. 205s Preparing to unpack .../09-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 205s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 205s Selecting previously unselected package libjs-sphinxdoc. 205s Preparing to unpack .../10-libjs-sphinxdoc_8.1.3-5_all.deb ... 205s Unpacking libjs-sphinxdoc (8.1.3-5) ... 205s Selecting previously unselected package liblapack3:arm64. 205s Preparing to unpack .../11-liblapack3_3.12.1-2_arm64.deb ... 205s Unpacking liblapack3:arm64 (3.12.1-2) ... 205s Selecting previously unselected package liblzf1:arm64. 205s Preparing to unpack .../12-liblzf1_3.6-4_arm64.deb ... 205s Unpacking liblzf1:arm64 (3.6-4) ... 205s Selecting previously unselected package libnetcdf22:arm64. 205s Preparing to unpack .../13-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 205s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 205s Selecting previously unselected package python-h5netcdf-doc. 205s Preparing to unpack .../14-python-h5netcdf-doc_1.4.1-1_all.deb ... 205s Unpacking python-h5netcdf-doc (1.4.1-1) ... 205s Selecting previously unselected package python3-all. 205s Preparing to unpack .../15-python3-all_3.13.1-1~exp2_arm64.deb ... 205s Unpacking python3-all (3.13.1-1~exp2) ... 205s Selecting previously unselected package python3-numpy. 205s Preparing to unpack .../16-python3-numpy_1%3a1.26.4+ds-13_arm64.deb ... 205s Unpacking python3-numpy (1:1.26.4+ds-13) ... 205s Selecting previously unselected package python3-cftime. 205s Preparing to unpack .../17-python3-cftime_1.6.4-1build2_arm64.deb ... 205s Unpacking python3-cftime (1.6.4-1build2) ... 206s Selecting previously unselected package python3-h5py-serial. 206s Preparing to unpack .../18-python3-h5py-serial_3.12.1-1_arm64.deb ... 206s Unpacking python3-h5py-serial (3.12.1-1) ... 206s Selecting previously unselected package python3-h5py. 206s Preparing to unpack .../19-python3-h5py_3.12.1-1_all.deb ... 206s Unpacking python3-h5py (3.12.1-1) ... 206s Selecting previously unselected package python3-packaging. 206s Preparing to unpack .../20-python3-packaging_24.2-1_all.deb ... 206s Unpacking python3-packaging (24.2-1) ... 206s Selecting previously unselected package python3-h5netcdf. 206s Preparing to unpack .../21-python3-h5netcdf_1.4.1-1_all.deb ... 206s Unpacking python3-h5netcdf (1.4.1-1) ... 206s Selecting previously unselected package python3-iniconfig. 206s Preparing to unpack .../22-python3-iniconfig_1.1.1-2_all.deb ... 206s Unpacking python3-iniconfig (1.1.1-2) ... 206s Selecting previously unselected package python3-netcdf4. 206s Preparing to unpack .../23-python3-netcdf4_1.7.2-1build3_arm64.deb ... 206s Unpacking python3-netcdf4 (1.7.2-1build3) ... 206s Selecting previously unselected package python3-pluggy. 206s Preparing to unpack .../24-python3-pluggy_1.5.0-1_all.deb ... 206s Unpacking python3-pluggy (1.5.0-1) ... 206s Selecting previously unselected package python3-pytest. 206s Preparing to unpack .../25-python3-pytest_8.3.4-1_all.deb ... 206s Unpacking python3-pytest (8.3.4-1) ... 206s Setting up python3-iniconfig (1.1.1-2) ... 207s Setting up python3.12-minimal (3.12.9-1) ... 208s Setting up python3.12 (3.12.9-1) ... 209s Setting up python3-all (3.13.1-1~exp2) ... 209s Setting up libaec0:arm64 (1.1.3-1) ... 209s Setting up libblas3:arm64 (3.12.1-2) ... 209s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 209s Setting up python3-packaging (24.2-1) ... 210s Setting up liblzf1:arm64 (3.6-4) ... 210s Setting up libgfortran5:arm64 (15-20250213-1ubuntu1) ... 210s Setting up python3-pluggy (1.5.0-1) ... 210s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 210s Setting up libsz2:arm64 (1.1.3-1) ... 210s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 210s Setting up liblapack3:arm64 (3.12.1-2) ... 210s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 210s Setting up python3-pytest (8.3.4-1) ... 211s Setting up python3-numpy (1:1.26.4+ds-13) ... 215s Setting up libjs-sphinxdoc (8.1.3-5) ... 215s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 215s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 215s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 215s Setting up python3-h5py-serial (3.12.1-1) ... 215s Setting up python-h5netcdf-doc (1.4.1-1) ... 215s Setting up python3-h5py (3.12.1-1) ... 216s Setting up python3-cftime (1.6.4-1build2) ... 216s Setting up python3-netcdf4 (1.7.2-1build3) ... 216s Setting up python3-h5netcdf (1.4.1-1) ... 216s Processing triggers for systemd (257.2-3ubuntu1) ... 217s Processing triggers for man-db (2.13.0-1) ... 217s Processing triggers for libc-bin (2.40-4ubuntu1) ... 219s autopkgtest [12:38:13]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 219s autopkgtest [12:38:13]: test command1: [----------------------- 219s Testing with python3.12: 220s ============================= test session starts ============================== 220s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 220s cachedir: .pytest_cache 220s rootdir: /tmp/autopkgtest.9hs0d8/autopkgtest_tmp/tests 220s configfile: pytest.ini 220s plugins: typeguard-4.4.1 221s collecting ... collected 152 items / 1 deselected / 151 selected 221s 221s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 221s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 221s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 221s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 221s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 221s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 221s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 221s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 221s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 221s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 221s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 221s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 222s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 222s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 222s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 222s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 222s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 222s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 222s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 222s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 222s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 222s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 222s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 222s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 222s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 222s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 222s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 222s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 222s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 223s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 223s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 223s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 223s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 223s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 223s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 223s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 223s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 223s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 223s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 223s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 223s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 223s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 223s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 223s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 223s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 223s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 223s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 223s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 223s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 223s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 223s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 223s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 223s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 223s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 223s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 223s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 223s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 223s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 223s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 223s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 223s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 223s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 223s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 223s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 223s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 223s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 223s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 223s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 223s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 223s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 223s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 223s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 223s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 223s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 223s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 224s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 224s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 224s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 224s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 225s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 225s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 225s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 225s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 225s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 225s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 225s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 225s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 225s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 225s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 225s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 225s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 225s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 225s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 225s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 225s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 225s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 225s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 225s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 225s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 225s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 225s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 225s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 225s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 225s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 225s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 225s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 225s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 225s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 225s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 225s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 225s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 225s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 225s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 225s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 225s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 225s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 225s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 225s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 225s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 225s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 225s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 225s 225s ================ 100 passed, 51 skipped, 1 deselected in 5.78s ================= 226s Testing with python3.13: 226s ============================= test session starts ============================== 226s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 226s cachedir: .pytest_cache 226s rootdir: /tmp/autopkgtest.9hs0d8/autopkgtest_tmp/tests 226s configfile: pytest.ini 226s plugins: typeguard-4.4.1 227s collecting ... collected 152 items / 1 deselected / 151 selected 227s 227s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 227s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 227s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 227s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 227s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 227s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 228s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 228s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 228s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 228s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 228s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 228s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 228s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 228s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 228s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 228s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 229s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 231s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 231s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 231s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 231s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 231s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 231s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 231s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 231s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 231s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 231s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 231s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 231s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 231s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 231s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 231s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 231s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 231s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 231s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 231s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 231s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 231s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 231s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 231s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 231s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 231s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 231s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 231s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 231s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 231s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 231s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 231s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 231s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 231s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 231s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 231s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 231s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 231s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 231s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 231s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 231s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 231s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 231s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 231s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 231s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 231s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 231s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 231s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 231s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 231s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 231s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 231s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 231s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 231s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 231s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 231s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 231s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 231s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 231s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 231s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 232s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 232s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 232s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 232s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 232s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 232s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 232s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 232s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 232s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 232s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 232s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 232s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 232s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 232s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 232s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 232s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 232s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 232s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 232s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 233s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 233s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 233s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 233s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 233s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 233s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 233s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 233s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 233s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 233s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 233s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 233s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 233s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 233s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 233s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 233s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 233s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 233s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 233s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 233s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 233s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 233s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 233s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 233s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 233s 233s ================ 100 passed, 51 skipped, 1 deselected in 6.81s ================= 233s autopkgtest [12:38:27]: test command1: -----------------------] 234s command1 PASS 234s autopkgtest [12:38:28]: test command1: - - - - - - - - - - results - - - - - - - - - - 234s autopkgtest [12:38:28]: test command2: preparing testbed 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 236s Starting pkgProblemResolver with broken count: 0 236s Starting 2 pkgProblemResolver with broken count: 0 236s Done 237s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s autopkgtest [12:38:32]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 238s autopkgtest [12:38:32]: test command2: [----------------------- 238s Testing with python3.12: 239s ============================= test session starts ============================== 239s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 239s cachedir: .pytest_cache 239s rootdir: /tmp/autopkgtest.9hs0d8/autopkgtest_tmp/tests 239s configfile: pytest.ini 239s plugins: typeguard-4.4.1 239s collecting ... collected 152 items / 151 deselected / 1 selected 239s 241s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 241s 241s ====================== 1 passed, 151 deselected in 2.04s ======================= 241s Testing with python3.13: 241s ============================= test session starts ============================== 241s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 241s cachedir: .pytest_cache 241s rootdir: /tmp/autopkgtest.9hs0d8/autopkgtest_tmp/tests 241s configfile: pytest.ini 241s plugins: typeguard-4.4.1 242s collecting ... collected 152 items / 151 deselected / 1 selected 242s 243s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 243s 243s ====================== 1 passed, 151 deselected in 1.99s ======================= 244s autopkgtest [12:38:38]: test command2: -----------------------] 244s command2 PASS 244s autopkgtest [12:38:38]: test command2: - - - - - - - - - - results - - - - - - - - - - 245s autopkgtest [12:38:39]: @@@@@@@@@@@@@@@@@@@@ summary 245s command1 PASS 245s command2 PASS 262s nova [W] Using flock in prodstack6-arm64 262s Creating nova instance adt-plucky-arm64-python-h5netcdf-20250219-123433-juju-7f2275-prod-proposed-migration-environment-20-92c5e32b-0dc0-46eb-aa1d-08801fb43de7 from image adt/ubuntu-plucky-arm64-server-20250219.img (UUID 02c92adb-9d9d-4b0e-b071-488d8ee6210f)... 262s nova [W] Timed out waiting for 74878777-d9e2-48a3-87bd-babc1b30ce61 to get deleted.