0s autopkgtest [16:33:15]: starting date and time: 2024-11-18 16:33:15+0000 0s autopkgtest [16:33:15]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:33:15]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.al4h9e99/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-28.secgroup --name adt-plucky-arm64-python-h5netcdf-20241118-163314-juju-7f2275-prod-proposed-migration-environment-20-2c53cb7f-2035-42ec-8bb5-a4f6a403ff03 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 151s autopkgtest [16:35:46]: testbed dpkg architecture: arm64 151s autopkgtest [16:35:46]: testbed apt version: 2.9.8 151s autopkgtest [16:35:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 152s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 152s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 152s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 153s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 153s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [103 kB] 153s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 153s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [638 kB] 154s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 154s Fetched 1778 kB in 2s (840 kB/s) 154s Reading package lists... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade... 158s The following NEW packages will be installed: 158s liblsof0 158s The following packages will be upgraded: 158s libnvme1t64 linux-firmware lsof 158s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 538 MB of archives. 158s After this operation, 1548 kB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 159s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 159s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 159s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 212s Fetched 538 MB in 53s (10.1 MB/s) 212s Selecting previously unselected package liblsof0. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 212s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 212s Unpacking liblsof0 (4.99.3+dfsg-2) ... 212s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 212s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 212s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 212s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 212s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 212s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 216s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 216s Setting up liblsof0 (4.99.3+dfsg-2) ... 216s Setting up libnvme1t64 (1.11.1-1) ... 216s Setting up lsof (4.99.3+dfsg-2) ... 216s Processing triggers for man-db (2.13.0-1) ... 216s Processing triggers for libc-bin (2.40-1ubuntu3) ... 216s Processing triggers for initramfs-tools (0.142ubuntu35) ... 216s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 216s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 236s System running in EFI mode, skipping. 236s Reading package lists... 236s Building dependency tree... 236s Reading state information... 237s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 238s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 238s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 238s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 239s Reading package lists... 239s Reading package lists... 239s Building dependency tree... 239s Reading state information... 240s Calculating upgrade... 240s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s autopkgtest [16:37:16]: rebooting testbed after setup commands that affected boot 245s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 268s autopkgtest [16:37:43]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 271s autopkgtest [16:37:46]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 273s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (dsc) [2388 B] 273s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (tar) [64.6 kB] 273s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (diff) [6016 B] 274s gpgv: Signature made Tue Nov 12 23:12:03 2024 UTC 274s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 274s gpgv: Can't check signature: No public key 274s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.0-3.dsc: no acceptable signature found 274s autopkgtest [16:37:49]: testing package python-h5netcdf version 1.4.0-3 274s autopkgtest [16:37:49]: build not needed 275s autopkgtest [16:37:50]: test command1: preparing testbed 279s Reading package lists... 279s Building dependency tree... 279s Reading state information... 279s Starting pkgProblemResolver with broken count: 0 279s Starting 2 pkgProblemResolver with broken count: 0 279s Done 280s The following additional packages will be installed: 280s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 280s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 280s libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 280s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 280s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 280s python3-pytest 280s Suggested packages: 280s python-h5py-doc gcc gfortran python-numpy-doc python3-dev 280s Recommended packages: 280s javascript-common 280s The following NEW packages will be installed: 280s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 280s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 280s liblzf1 libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 280s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 280s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 280s python3-pytest 280s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 280s Need to get 12.4 MB/12.4 MB of archives. 280s After this operation, 60.1 MB of additional disk space will be used. 280s Get:1 /tmp/autopkgtest.sWfkpa/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 280s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 281s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 281s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 281s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 281s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 281s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 281s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 281s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 281s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 281s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 281s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 281s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 281s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-h5netcdf-doc all 1.4.0-3 [52.8 kB] 281s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 281s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 282s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cftime arm64 1.6.4-1build1 [290 kB] 282s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 282s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 282s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 282s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5netcdf all 1.4.0-3 [47.2 kB] 282s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 282s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-netcdf4 arm64 1.7.2-1build1 [798 kB] 282s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 282s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 282s Fetched 12.4 MB in 2s (7687 kB/s) 282s Selecting previously unselected package libaec0:arm64. 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 283s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ... 283s Unpacking libaec0:arm64 (1.1.3-1) ... 283s Selecting previously unselected package libblas3:arm64. 283s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ... 283s Unpacking libblas3:arm64 (3.12.0-3build2) ... 283s Selecting previously unselected package libgfortran5:arm64. 283s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 283s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 283s Selecting previously unselected package libsz2:arm64. 283s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ... 283s Unpacking libsz2:arm64 (1.1.3-1) ... 283s Selecting previously unselected package libhdf5-103-1t64:arm64. 283s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 283s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 283s Selecting previously unselected package libhdf5-hl-100t64:arm64. 283s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 283s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 283s Selecting previously unselected package libjs-jquery. 283s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 283s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 283s Selecting previously unselected package libjs-underscore. 283s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 283s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 283s Selecting previously unselected package libjs-sphinxdoc. 283s Preparing to unpack .../08-libjs-sphinxdoc_7.4.7-4_all.deb ... 283s Unpacking libjs-sphinxdoc (7.4.7-4) ... 283s Selecting previously unselected package liblapack3:arm64. 283s Preparing to unpack .../09-liblapack3_3.12.0-3build2_arm64.deb ... 283s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 283s Selecting previously unselected package liblzf1:arm64. 283s Preparing to unpack .../10-liblzf1_3.6-4_arm64.deb ... 283s Unpacking liblzf1:arm64 (3.6-4) ... 283s Selecting previously unselected package libnetcdf19t64:arm64. 283s Preparing to unpack .../11-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ... 283s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 283s Selecting previously unselected package python-h5netcdf-doc. 283s Preparing to unpack .../12-python-h5netcdf-doc_1.4.0-3_all.deb ... 283s Unpacking python-h5netcdf-doc (1.4.0-3) ... 283s Selecting previously unselected package python3-all. 283s Preparing to unpack .../13-python3-all_3.12.6-0ubuntu1_arm64.deb ... 283s Unpacking python3-all (3.12.6-0ubuntu1) ... 283s Selecting previously unselected package python3-numpy. 283s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 283s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 283s Selecting previously unselected package python3-cftime. 283s Preparing to unpack .../15-python3-cftime_1.6.4-1build1_arm64.deb ... 283s Unpacking python3-cftime (1.6.4-1build1) ... 283s Selecting previously unselected package python3-h5py-serial. 284s Preparing to unpack .../16-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 284s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 284s Selecting previously unselected package python3-h5py. 284s Preparing to unpack .../17-python3-h5py_3.11.0-8ubuntu1_all.deb ... 284s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 284s Selecting previously unselected package python3-packaging. 284s Preparing to unpack .../18-python3-packaging_24.2-1_all.deb ... 284s Unpacking python3-packaging (24.2-1) ... 284s Selecting previously unselected package python3-h5netcdf. 284s Preparing to unpack .../19-python3-h5netcdf_1.4.0-3_all.deb ... 284s Unpacking python3-h5netcdf (1.4.0-3) ... 284s Selecting previously unselected package python3-iniconfig. 284s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 284s Unpacking python3-iniconfig (1.1.1-2) ... 284s Selecting previously unselected package python3-netcdf4. 284s Preparing to unpack .../21-python3-netcdf4_1.7.2-1build1_arm64.deb ... 284s Unpacking python3-netcdf4 (1.7.2-1build1) ... 284s Selecting previously unselected package python3-pluggy. 284s Preparing to unpack .../22-python3-pluggy_1.5.0-1_all.deb ... 284s Unpacking python3-pluggy (1.5.0-1) ... 284s Selecting previously unselected package python3-pytest. 284s Preparing to unpack .../23-python3-pytest_8.3.3-1_all.deb ... 284s Unpacking python3-pytest (8.3.3-1) ... 284s Selecting previously unselected package autopkgtest-satdep. 284s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 284s Unpacking autopkgtest-satdep (0) ... 284s Setting up python3-iniconfig (1.1.1-2) ... 284s Setting up python3-all (3.12.6-0ubuntu1) ... 284s Setting up libaec0:arm64 (1.1.3-1) ... 284s Setting up libblas3:arm64 (3.12.0-3build2) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 284s Setting up python3-packaging (24.2-1) ... 284s Setting up liblzf1:arm64 (3.6-4) ... 284s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 284s Setting up python3-pluggy (1.5.0-1) ... 284s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 284s Setting up libsz2:arm64 (1.1.3-1) ... 284s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 284s Setting up liblapack3:arm64 (3.12.0-3build2) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 284s Setting up python3-pytest (8.3.3-1) ... 285s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 287s Setting up libjs-sphinxdoc (7.4.7-4) ... 287s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 287s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 287s Setting up libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 287s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 287s Setting up python-h5netcdf-doc (1.4.0-3) ... 287s Setting up python3-h5py (3.11.0-8ubuntu1) ... 287s Setting up python3-cftime (1.6.4-1build1) ... 287s Setting up python3-netcdf4 (1.7.2-1build1) ... 288s Setting up python3-h5netcdf (1.4.0-3) ... 288s Setting up autopkgtest-satdep (0) ... 288s Processing triggers for man-db (2.13.0-1) ... 289s Processing triggers for libc-bin (2.40-1ubuntu3) ... 293s (Reading database ... 81459 files and directories currently installed.) 293s Removing autopkgtest-satdep (0) ... 293s autopkgtest [16:38:08]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 293s autopkgtest [16:38:08]: test command1: [----------------------- 294s Testing with python3.12: 294s ============================= test session starts ============================== 294s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 294s cachedir: .pytest_cache 294s rootdir: /tmp/autopkgtest.sWfkpa/autopkgtest_tmp/tests 294s configfile: pytest.ini 294s plugins: typeguard-4.4.1 295s collecting ... collected 152 items / 1 deselected / 151 selected 295s 295s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 295s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 295s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 295s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 295s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 295s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 295s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 295s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 295s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 295s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 295s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 295s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 295s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 296s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 296s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 296s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 296s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 296s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 296s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 296s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 296s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 296s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 296s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 296s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 296s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 296s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 296s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 296s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 296s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 296s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 296s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 296s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 296s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 296s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 296s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 296s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 296s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 296s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 296s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 296s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 296s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 296s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 296s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 296s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 296s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 296s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 296s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 296s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 296s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 296s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 296s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 296s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 296s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 296s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 296s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 296s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 296s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 296s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 296s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 296s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 296s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 296s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 296s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 296s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 296s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 296s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 296s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 296s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 296s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 296s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 296s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 296s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 296s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 296s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 297s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 297s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 297s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 297s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 297s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 297s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 297s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 297s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 297s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 297s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 297s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 298s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 298s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 298s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 298s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 298s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 298s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 298s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 298s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 298s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 298s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 298s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 298s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 298s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 298s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 298s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 298s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 298s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 298s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 298s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 298s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 298s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 298s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 298s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 298s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 298s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 298s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 298s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 298s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 298s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 298s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 298s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 298s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 298s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 298s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 298s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 298s 298s ================ 100 passed, 51 skipped, 1 deselected in 4.04s ================= 298s autopkgtest [16:38:13]: test command1: -----------------------] 299s command1 PASS 299s autopkgtest [16:38:14]: test command1: - - - - - - - - - - results - - - - - - - - - - 299s autopkgtest [16:38:14]: test command2: preparing testbed 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 301s Done 302s The following NEW packages will be installed: 302s autopkgtest-satdep 302s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 302s Need to get 0 B/732 B of archives. 302s After this operation, 0 B of additional disk space will be used. 302s Get:1 /tmp/autopkgtest.sWfkpa/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 303s Selecting previously unselected package autopkgtest-satdep. 303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81459 files and directories currently installed.) 303s Preparing to unpack .../2-autopkgtest-satdep.deb ... 303s Unpacking autopkgtest-satdep (0) ... 303s Setting up autopkgtest-satdep (0) ... 305s (Reading database ... 81459 files and directories currently installed.) 305s Removing autopkgtest-satdep (0) ... 306s autopkgtest [16:38:21]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 306s autopkgtest [16:38:21]: test command2: [----------------------- 306s Testing with python3.12: 307s ============================= test session starts ============================== 307s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 307s cachedir: .pytest_cache 307s rootdir: /tmp/autopkgtest.sWfkpa/autopkgtest_tmp/tests 307s configfile: pytest.ini 307s plugins: typeguard-4.4.1 307s collecting ... collected 152 items / 151 deselected / 1 selected 307s 344s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 344s 344s ====================== 1 passed, 151 deselected in 36.83s ====================== 344s autopkgtest [16:38:59]: test command2: -----------------------] 344s command2 PASS 344s autopkgtest [16:38:59]: test command2: - - - - - - - - - - results - - - - - - - - - - 345s autopkgtest [16:39:00]: @@@@@@@@@@@@@@@@@@@@ summary 345s command1 PASS 345s command2 PASS 356s nova [W] Skipping flock in bos03-arm64 356s Creating nova instance adt-plucky-arm64-python-h5netcdf-20241118-163314-juju-7f2275-prod-proposed-migration-environment-20-2c53cb7f-2035-42ec-8bb5-a4f6a403ff03 from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)...