0s autopkgtest [10:31:31]: starting date and time: 2024-11-13 10:31:31+0000
  0s autopkgtest [10:31:31]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [10:31:31]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lnzv6lkl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-gtfparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-37.secgroup --name adt-plucky-arm64-python-gtfparse-20241113-103131-juju-7f2275-prod-proposed-migration-environment-15-cc545524-b1de-4dd8-a54a-ae56f788feb0 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
111s autopkgtest [10:33:22]: testbed dpkg architecture: arm64
112s autopkgtest [10:33:23]: testbed apt version: 2.9.8
112s autopkgtest [10:33:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
113s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
113s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
114s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
114s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
114s Fetched 1794 kB in 1s (1374 kB/s)
114s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
119s Calculating upgrade...
120s The following NEW packages will be installed:
120s   python3.13-gdbm
120s The following packages will be upgraded:
120s   libpython3-stdlib python3 python3-gdbm python3-minimal
120s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
120s Need to get 101 kB of archives.
120s After this operation, 141 kB of additional disk space will be used.
120s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
120s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
120s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
120s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
121s Fetched 101 kB in 0s (265 kB/s)
121s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
121s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
121s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Setting up python3-minimal (3.12.7-1) ...
121s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
121s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
121s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
121s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Selecting previously unselected package python3.13-gdbm.
121s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
121s Unpacking python3.13-gdbm (3.13.0-2) ...
122s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
122s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
122s Setting up python3.13-gdbm (3.13.0-2) ...
122s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
122s Setting up python3 (3.12.7-1) ...
122s Setting up python3-gdbm:arm64 (3.12.7-1) ...
122s Processing triggers for man-db (2.12.1-3) ...
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
124s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
124s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
125s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
126s Reading package lists...
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
127s Calculating upgrade...
127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s autopkgtest [10:33:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
134s autopkgtest [10:33:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gtfparse
136s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (dsc) [2217 B]
136s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (tar) [14.4 kB]
136s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (diff) [4296 B]
136s gpgv: Signature made Sun Dec  4 16:14:43 2022 UTC
136s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
136s gpgv:                issuer "emollier@emlwks999.eu"
136s gpgv: Can't check signature: No public key
136s dpkg-source: warning: cannot verify inline signature for ./python-gtfparse_1.3.0+ds-1.dsc: no acceptable signature found
136s autopkgtest [10:33:47]: testing package python-gtfparse version 1.3.0+ds-1
138s autopkgtest [10:33:49]: build not needed
141s autopkgtest [10:33:52]: test run-unit-test: preparing testbed
146s Reading package lists...
147s Building dependency tree...
147s Reading state information...
147s Starting pkgProblemResolver with broken count: 0
147s Starting 2 pkgProblemResolver with broken count: 0
147s Done
149s The following additional packages will be installed:
149s   libblas3 libgfortran5 liblapack3 python3-dateutil python3-gtfparse
149s   python3-iniconfig python3-numpy python3-packaging python3-pandas
149s   python3-pandas-lib python3-pluggy python3-pytest python3-six python3-tz
149s Suggested packages:
149s   gcc gfortran python-numpy-doc python3-dev python-pandas-doc
149s   python3-statsmodels
149s Recommended packages:
149s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
149s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
149s   python3-tables
149s The following NEW packages will be installed:
149s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 python3-dateutil
149s   python3-gtfparse python3-iniconfig python3-numpy python3-packaging
149s   python3-pandas python3-pandas-lib python3-pluggy python3-pytest python3-six
149s   python3-tz
149s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded.
149s Need to get 14.5 MB/14.5 MB of archives.
149s After this operation, 72.7 MB of additional disk space will be used.
149s Get:1 /tmp/autopkgtest.ba4NeB/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B]
149s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
149s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
149s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
150s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
150s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
150s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
151s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
151s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB]
152s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
152s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
152s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
152s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
152s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
152s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
152s Fetched 14.5 MB in 3s (4616 kB/s)
152s Selecting previously unselected package libblas3:arm64.
152s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
152s Preparing to unpack .../00-libblas3_3.12.0-3build2_arm64.deb ...
152s Unpacking libblas3:arm64 (3.12.0-3build2) ...
152s Selecting previously unselected package libgfortran5:arm64.
152s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
152s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
153s Selecting previously unselected package liblapack3:arm64.
153s Preparing to unpack .../02-liblapack3_3.12.0-3build2_arm64.deb ...
153s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
153s Selecting previously unselected package python3-six.
153s Preparing to unpack .../03-python3-six_1.16.0-7_all.deb ...
153s Unpacking python3-six (1.16.0-7) ...
153s Selecting previously unselected package python3-dateutil.
153s Preparing to unpack .../04-python3-dateutil_2.9.0-2_all.deb ...
153s Unpacking python3-dateutil (2.9.0-2) ...
153s Selecting previously unselected package python3-numpy.
153s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
153s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
153s Selecting previously unselected package python3-tz.
153s Preparing to unpack .../06-python3-tz_2024.1-2_all.deb ...
153s Unpacking python3-tz (2024.1-2) ...
153s Selecting previously unselected package python3-pandas-lib:arm64.
153s Preparing to unpack .../07-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ...
153s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
153s Selecting previously unselected package python3-pandas.
153s Preparing to unpack .../08-python3-pandas_2.2.3+dfsg-5_all.deb ...
153s Unpacking python3-pandas (2.2.3+dfsg-5) ...
153s Selecting previously unselected package python3-gtfparse.
154s Preparing to unpack .../09-python3-gtfparse_1.3.0+ds-1_all.deb ...
154s Unpacking python3-gtfparse (1.3.0+ds-1) ...
154s Selecting previously unselected package python3-iniconfig.
154s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ...
154s Unpacking python3-iniconfig (1.1.1-2) ...
154s Selecting previously unselected package python3-packaging.
154s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ...
154s Unpacking python3-packaging (24.1-1) ...
154s Selecting previously unselected package python3-pluggy.
154s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ...
154s Unpacking python3-pluggy (1.5.0-1) ...
154s Selecting previously unselected package python3-pytest.
154s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ...
154s Unpacking python3-pytest (8.3.3-1) ...
154s Selecting previously unselected package autopkgtest-satdep.
154s Preparing to unpack .../14-1-autopkgtest-satdep.deb ...
154s Unpacking autopkgtest-satdep (0) ...
154s Setting up python3-iniconfig (1.1.1-2) ...
154s Setting up python3-tz (2024.1-2) ...
154s Setting up python3-six (1.16.0-7) ...
154s Setting up libblas3:arm64 (3.12.0-3build2) ...
154s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
154s Setting up python3-packaging (24.1-1) ...
154s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
154s Setting up python3-pluggy (1.5.0-1) ...
155s Setting up python3-dateutil (2.9.0-2) ...
155s Setting up liblapack3:arm64 (3.12.0-3build2) ...
155s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
155s Setting up python3-pytest (8.3.3-1) ...
155s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
158s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
158s Setting up python3-pandas (2.2.3+dfsg-5) ...
164s Setting up python3-gtfparse (1.3.0+ds-1) ...
164s Setting up autopkgtest-satdep (0) ...
164s Processing triggers for man-db (2.12.1-3) ...
164s Processing triggers for libc-bin (2.40-1ubuntu3) ...
167s (Reading database ... 82821 files and directories currently installed.)
167s Removing autopkgtest-satdep (0) ...
168s autopkgtest [10:34:19]: test run-unit-test: [-----------------------
169s Testing with python3.13 in /tmp/autopkgtest.ba4NeB/build.lTU/src:
169s ============================= test session starts ==============================
169s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
169s cachedir: .pytest_cache
169s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
169s plugins: typeguard-4.4.1
170s collecting ... collected 2 items
170s 
170s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
170s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
170s 
170s ============================== 2 passed in 0.76s ===============================
170s ============================= test session starts ==============================
170s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
170s cachedir: .pytest_cache
170s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
170s plugins: typeguard-4.4.1
170s collecting ... collected 3 items
170s 
170s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
170s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
170s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
170s 
170s ============================== 3 passed in 0.43s ===============================
171s ============================= test session starts ==============================
171s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
171s cachedir: .pytest_cache
171s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
171s plugins: typeguard-4.4.1
171s collecting ... collected 3 items
171s 
171s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
171s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
171s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
171s 
171s ============================== 3 passed in 0.44s ===============================
172s ============================= test session starts ==============================
172s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
172s cachedir: .pytest_cache
172s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
172s plugins: typeguard-4.4.1
172s collecting ... collected 4 items
172s 
172s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
172s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
172s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
172s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
172s 
172s ============================== 4 passed in 0.45s ===============================
172s Testing with python3.12 in /tmp/autopkgtest.ba4NeB/build.lTU/src:
173s ============================= test session starts ==============================
173s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
173s cachedir: .pytest_cache
173s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
173s plugins: typeguard-4.4.1
173s collecting ... collected 2 items
173s 
173s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
173s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
173s 
173s ============================== 2 passed in 0.42s ===============================
173s ============================= test session starts ==============================
173s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
173s cachedir: .pytest_cache
173s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
173s plugins: typeguard-4.4.1
174s collecting ... collected 3 items
174s 
174s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
174s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
174s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
174s 
174s ============================== 3 passed in 0.44s ===============================
174s ============================= test session starts ==============================
174s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
174s cachedir: .pytest_cache
174s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
174s plugins: typeguard-4.4.1
175s collecting ... collected 3 items
175s 
175s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
175s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
175s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
175s 
175s ============================== 3 passed in 0.47s ===============================
175s ============================= test session starts ==============================
175s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
175s cachedir: .pytest_cache
175s rootdir: /tmp/autopkgtest.ba4NeB/build.lTU/src
175s plugins: typeguard-4.4.1
176s collecting ... collected 4 items
176s 
176s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
176s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
176s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
176s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
176s 
176s ============================== 4 passed in 0.46s ===============================
176s autopkgtest [10:34:27]: test run-unit-test: -----------------------]
178s autopkgtest [10:34:29]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
178s run-unit-test        PASS
178s autopkgtest [10:34:29]: test autodep8-python3: preparing testbed
373s autopkgtest [10:37:44]: testbed dpkg architecture: arm64
373s autopkgtest [10:37:44]: testbed apt version: 2.9.8
373s autopkgtest [10:37:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup
375s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
375s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
375s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
375s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
375s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
375s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
375s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
375s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
375s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
375s Fetched 1794 kB in 1s (1876 kB/s)
376s Reading package lists...
383s Reading package lists...
384s Building dependency tree...
384s Reading state information...
384s Calculating upgrade...
386s The following NEW packages will be installed:
386s   python3.13-gdbm
386s The following packages will be upgraded:
386s   libpython3-stdlib python3 python3-gdbm python3-minimal
386s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
386s Need to get 101 kB of archives.
386s After this operation, 141 kB of additional disk space will be used.
386s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
386s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
386s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
386s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
386s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
387s Fetched 101 kB in 0s (281 kB/s)
387s (Reading database ... 
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(Reading database ... 79924 files and directories currently installed.)
387s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
387s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
387s Setting up python3-minimal (3.12.7-1) ...
387s (Reading database ... 
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387s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
387s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
387s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
387s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
387s Selecting previously unselected package python3.13-gdbm.
387s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
387s Unpacking python3.13-gdbm (3.13.0-2) ...
388s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
388s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
388s Setting up python3.13-gdbm (3.13.0-2) ...
388s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
388s Setting up python3 (3.12.7-1) ...
388s Setting up python3-gdbm:arm64 (3.12.7-1) ...
388s Processing triggers for man-db (2.12.1-3) ...
389s Reading package lists...
389s Building dependency tree...
389s Reading state information...
391s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
391s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
391s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
391s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
391s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
393s Reading package lists...
393s Reading package lists...
393s Building dependency tree...
393s Reading state information...
394s Calculating upgrade...
395s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
396s Reading package lists...
396s Building dependency tree...
396s Reading state information...
397s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
406s Reading package lists...
406s Building dependency tree...
406s Reading state information...
407s Starting pkgProblemResolver with broken count: 0
407s Starting 2 pkgProblemResolver with broken count: 0
407s Done
408s The following additional packages will be installed:
408s   libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib
408s   python3-all python3-dateutil python3-gtfparse python3-numpy python3-pandas
408s   python3-pandas-lib python3-six python3-tz python3.13 python3.13-minimal
408s Suggested packages:
408s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc
408s   python3-statsmodels python3.13-venv python3.13-doc binfmt-support
408s Recommended packages:
408s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
408s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
408s   python3-tables
408s The following NEW packages will be installed:
408s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal
408s   libpython3.13-stdlib python3-all python3-dateutil python3-gtfparse
408s   python3-numpy python3-pandas python3-pandas-lib python3-six python3-tz
408s   python3.13 python3.13-minimal
408s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded.
408s Need to get 20.0 MB/20.0 MB of archives.
408s After this operation, 95.2 MB of additional disk space will be used.
408s Get:1 /tmp/autopkgtest.ba4NeB/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B]
408s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
409s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
409s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
409s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
409s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
409s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
409s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
409s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
409s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
409s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
409s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
409s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
409s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB]
409s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
409s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
409s Fetched 20.0 MB in 1s (17.1 MB/s)
409s Selecting previously unselected package libpython3.13-minimal:arm64.
410s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
410s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ...
410s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
410s Selecting previously unselected package python3.13-minimal.
410s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ...
410s Unpacking python3.13-minimal (3.13.0-2) ...
410s Selecting previously unselected package libblas3:arm64.
410s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ...
410s Unpacking libblas3:arm64 (3.12.0-3build2) ...
410s Selecting previously unselected package libgfortran5:arm64.
410s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
410s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
410s Selecting previously unselected package liblapack3:arm64.
410s Preparing to unpack .../04-liblapack3_3.12.0-3build2_arm64.deb ...
410s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
410s Selecting previously unselected package libpython3.13-stdlib:arm64.
410s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
410s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
410s Selecting previously unselected package python3.13.
410s Preparing to unpack .../06-python3.13_3.13.0-2_arm64.deb ...
410s Unpacking python3.13 (3.13.0-2) ...
410s Selecting previously unselected package python3-all.
410s Preparing to unpack .../07-python3-all_3.12.7-1_arm64.deb ...
410s Unpacking python3-all (3.12.7-1) ...
410s Selecting previously unselected package python3-six.
410s Preparing to unpack .../08-python3-six_1.16.0-7_all.deb ...
410s Unpacking python3-six (1.16.0-7) ...
410s Selecting previously unselected package python3-dateutil.
410s Preparing to unpack .../09-python3-dateutil_2.9.0-2_all.deb ...
410s Unpacking python3-dateutil (2.9.0-2) ...
410s Selecting previously unselected package python3-numpy.
410s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
410s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
410s Selecting previously unselected package python3-tz.
410s Preparing to unpack .../11-python3-tz_2024.1-2_all.deb ...
410s Unpacking python3-tz (2024.1-2) ...
410s Selecting previously unselected package python3-pandas-lib:arm64.
410s Preparing to unpack .../12-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ...
410s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
410s Selecting previously unselected package python3-pandas.
410s Preparing to unpack .../13-python3-pandas_2.2.3+dfsg-5_all.deb ...
410s Unpacking python3-pandas (2.2.3+dfsg-5) ...
411s Selecting previously unselected package python3-gtfparse.
411s Preparing to unpack .../14-python3-gtfparse_1.3.0+ds-1_all.deb ...
411s Unpacking python3-gtfparse (1.3.0+ds-1) ...
411s Selecting previously unselected package autopkgtest-satdep.
411s Preparing to unpack .../15-2-autopkgtest-satdep.deb ...
411s Unpacking autopkgtest-satdep (0) ...
411s Setting up python3-tz (2024.1-2) ...
411s Setting up python3-six (1.16.0-7) ...
411s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
411s Setting up libblas3:arm64 (3.12.0-3build2) ...
411s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
411s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
411s Setting up python3.13-minimal (3.13.0-2) ...
412s Setting up python3-dateutil (2.9.0-2) ...
413s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
413s Setting up liblapack3:arm64 (3.12.0-3build2) ...
413s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
413s Setting up python3.13 (3.13.0-2) ...
414s Setting up python3-all (3.12.7-1) ...
414s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
418s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
418s Setting up python3-pandas (2.2.3+dfsg-5) ...
429s Setting up python3-gtfparse (1.3.0+ds-1) ...
429s Setting up autopkgtest-satdep (0) ...
429s Processing triggers for systemd (256.5-2ubuntu4) ...
429s Processing triggers for man-db (2.12.1-3) ...
429s Processing triggers for libc-bin (2.40-1ubuntu3) ...
432s (Reading database ... 83392 files and directories currently installed.)
432s Removing autopkgtest-satdep (0) ...
434s autopkgtest [10:38:45]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import gtfparse; print(gtfparse)" ; done
434s autopkgtest [10:38:45]: test autodep8-python3: [-----------------------
434s Testing with python3.13:
434s Traceback (most recent call last):
434s   File "<string>", line 1, in <module>
434s     import gtfparse; print(gtfparse)
434s     ^^^^^^^^^^^^^^^
434s   File "/usr/lib/python3/dist-packages/gtfparse/__init__.py", line 14, in <module>
434s     from .create_missing_features import create_missing_features
434s   File "/usr/lib/python3/dist-packages/gtfparse/create_missing_features.py", line 16, in <module>
434s     import pandas as pd
434s   File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in <module>
434s     raise ImportError(
434s         "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies)
434s     )
434s ImportError: Unable to import required dependencies:
434s numpy: Error importing numpy: you should not try to import numpy from
434s         its source directory; please exit the numpy source tree, and relaunch
434s         your python interpreter from there.
435s autopkgtest [10:38:46]: test autodep8-python3: -----------------------]
435s autopkgtest [10:38:46]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
435s autodep8-python3     FAIL non-zero exit status 1
436s autopkgtest [10:38:47]: @@@@@@@@@@@@@@@@@@@@ summary
436s run-unit-test        PASS
436s autodep8-python3     FAIL non-zero exit status 1
447s nova [W] Skipping flock in bos03-arm64
447s Creating nova instance adt-plucky-arm64-python-gtfparse-20241113-103131-juju-7f2275-prod-proposed-migration-environment-15-cc545524-b1de-4dd8-a54a-ae56f788feb0 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...
447s nova [W] Skipping flock in bos03-arm64
447s Creating nova instance adt-plucky-arm64-python-gtfparse-20241113-103131-juju-7f2275-prod-proposed-migration-environment-15-cc545524-b1de-4dd8-a54a-ae56f788feb0 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...