0s autopkgtest [10:31:27]: starting date and time: 2024-11-13 10:31:27+0000
  0s autopkgtest [10:31:27]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time
  0s autopkgtest [10:31:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lc7wiziq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-griddataformats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-51.secgroup --name adt-plucky-arm64-python-griddataformats-20241113-103127-juju-7f2275-prod-proposed-migration-environment-2-4c682355-76eb-42c6-8671-0f407c6cb8ea --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 91s autopkgtest [10:32:58]: testbed dpkg architecture: arm64
 91s autopkgtest [10:32:58]: testbed apt version: 2.9.8
 91s autopkgtest [10:32:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 92s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 93s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 93s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 93s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 93s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 93s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
 93s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 93s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
 93s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
 93s Fetched 1794 kB in 1s (1976 kB/s)
 93s Reading package lists...
 96s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s Calculating upgrade...
 98s The following NEW packages will be installed:
 98s   python3.13-gdbm
 98s The following packages will be upgraded:
 98s   libpython3-stdlib python3 python3-gdbm python3-minimal
 98s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 98s Need to get 101 kB of archives.
 98s After this operation, 141 kB of additional disk space will be used.
 98s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
 98s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
 98s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
 99s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
 99s Fetched 101 kB in 0s (284 kB/s)
 99s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 99s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
 99s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 99s Setting up python3-minimal (3.12.7-1) ...
100s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
100s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
100s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
100s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
100s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
100s Selecting previously unselected package python3.13-gdbm.
100s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
100s Unpacking python3.13-gdbm (3.13.0-2) ...
100s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
100s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
100s Setting up python3.13-gdbm (3.13.0-2) ...
100s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
100s Setting up python3 (3.12.7-1) ...
100s Setting up python3-gdbm:arm64 (3.12.7-1) ...
100s Processing triggers for man-db (2.12.1-3) ...
101s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
104s Reading package lists...
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
105s Calculating upgrade...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s autopkgtest [10:33:16]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
109s autopkgtest [10:33:16]: @@@@@@@@@@@@@@@@@@@@ apt-source python-griddataformats
111s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (dsc) [2289 B]
111s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (tar) [2159 kB]
111s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (diff) [3276 B]
112s gpgv: Signature made Mon Jul 22 19:07:58 2024 UTC
112s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
112s gpgv:                issuer "tchet@debian.org"
112s gpgv: Can't check signature: No public key
112s dpkg-source: warning: cannot verify inline signature for ./python-griddataformats_1.0.2-2.dsc: no acceptable signature found
112s autopkgtest [10:33:19]: testing package python-griddataformats version 1.0.2-2
112s autopkgtest [10:33:19]: build not needed
113s autopkgtest [10:33:20]: test command1: preparing testbed
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
115s Starting pkgProblemResolver with broken count: 0
115s Starting 2 pkgProblemResolver with broken count: 0
115s Done
117s The following additional packages will be installed:
117s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
117s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit
117s   dh-autoreconf dh-python dh-strip-nondeterminism dwz fonts-font-awesome
117s   fonts-lato g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
117s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext
117s   intltool-debian libarchive-zip-perl libasan8 libblas3 libcc1-0
117s   libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev
117s   libgfortran5 libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery
117s   libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblsan0 libmpc3
117s   libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtool libtsan2
117s   libubsan1 m4 po-debconf python3-all python3-decorator
117s   python3-griddataformats python3-iniconfig python3-mrcfile python3-numpy
117s   python3-packaging python3-pluggy python3-pytest python3-scipy python3.13
117s   python3.13-minimal sphinx-rtd-theme-common
117s Suggested packages:
117s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
117s   cpp-14-doc dh-make flit python3-build python3-installer python3-wheel
117s   gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
117s   gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
117s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
117s   libmail-box-perl gfortran python-numpy-doc python3-dev python-scipy-doc
117s   python3.13-venv python3.13-doc binfmt-support
117s Recommended packages:
117s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
117s   python3-pil
117s The following NEW packages will be installed:
117s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
117s   cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
117s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz
117s   fonts-font-awesome fonts-lato g++ g++-14 g++-14-aarch64-linux-gnu
117s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
117s   gcc-aarch64-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
117s   libblas3 libcc1-0 libdebhelper-perl libfile-stripnondeterminism-perl
117s   libgcc-14-dev libgfortran5 libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery
117s   libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblsan0 libmpc3
117s   libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtool libtsan2
117s   libubsan1 m4 po-debconf python3-all python3-decorator
117s   python3-griddataformats python3-iniconfig python3-mrcfile python3-numpy
117s   python3-packaging python3-pluggy python3-pytest python3-scipy python3.13
117s   python3.13-minimal sphinx-rtd-theme-common
117s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
117s Need to get 101 MB/101 MB of archives.
117s After this operation, 360 MB of additional disk space will be used.
117s Get:1 /tmp/autopkgtest.kNWYe3/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [804 B]
117s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-lato all 2.015-1 [2781 kB]
118s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
118s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
118s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
118s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB]
118s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
118s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
118s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB]
118s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
118s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
118s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
118s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
118s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
118s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
118s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
118s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
118s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
118s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
118s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
118s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
118s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
118s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
118s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
118s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
119s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
119s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
119s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
119s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
119s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
119s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
119s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
119s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
119s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
119s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
119s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB]
119s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
119s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
119s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
119s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
119s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB]
119s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
119s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB]
119s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
119s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
119s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB]
119s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB]
119s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
119s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
119s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
119s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
119s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
119s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
119s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
119s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
119s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
119s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
119s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
119s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
119s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
120s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB]
120s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mrcfile all 1.5.3-3 [114 kB]
120s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
120s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-griddataformats all 1.0.2-2 [2107 kB]
120s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
120s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
120s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
120s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
121s Fetched 101 MB in 3s (31.1 MB/s)
121s Selecting previously unselected package fonts-lato.
121s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79931 files and directories currently installed.)
121s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ...
121s Unpacking fonts-lato (2.015-1) ...
121s Selecting previously unselected package libpython3.13-minimal:arm64.
121s Preparing to unpack .../01-libpython3.13-minimal_3.13.0-2_arm64.deb ...
121s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
121s Selecting previously unselected package python3.13-minimal.
121s Preparing to unpack .../02-python3.13-minimal_3.13.0-2_arm64.deb ...
121s Unpacking python3.13-minimal (3.13.0-2) ...
121s Selecting previously unselected package m4.
121s Preparing to unpack .../03-m4_1.4.19-4build1_arm64.deb ...
121s Unpacking m4 (1.4.19-4build1) ...
121s Selecting previously unselected package autoconf.
121s Preparing to unpack .../04-autoconf_2.72-3_all.deb ...
121s Unpacking autoconf (2.72-3) ...
121s Selecting previously unselected package autotools-dev.
121s Preparing to unpack .../05-autotools-dev_20220109.1_all.deb ...
121s Unpacking autotools-dev (20220109.1) ...
121s Selecting previously unselected package automake.
121s Preparing to unpack .../06-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
121s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
121s Selecting previously unselected package autopoint.
121s Preparing to unpack .../07-autopoint_0.22.5-2_all.deb ...
121s Unpacking autopoint (0.22.5-2) ...
122s Selecting previously unselected package libisl23:arm64.
122s Preparing to unpack .../08-libisl23_0.27-1_arm64.deb ...
122s Unpacking libisl23:arm64 (0.27-1) ...
122s Selecting previously unselected package libmpc3:arm64.
122s Preparing to unpack .../09-libmpc3_1.3.1-1build2_arm64.deb ...
122s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
122s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
122s Preparing to unpack .../10-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
122s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
122s Selecting previously unselected package cpp-14.
122s Preparing to unpack .../11-cpp-14_14.2.0-8ubuntu1_arm64.deb ...
122s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
122s Selecting previously unselected package cpp-aarch64-linux-gnu.
122s Preparing to unpack .../12-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
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130s Setting up liblapack3:arm64 (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
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132s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
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145s Setting up python3-griddataformats (1.0.2-2) ...
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145s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
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145s Setting up g++ (4:14.1.0-2ubuntu1) ...
145s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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145s Setting up debhelper (13.20ubuntu1) ...
145s Setting up autopkgtest-satdep (0) ...
145s Processing triggers for systemd (256.5-2ubuntu4) ...
145s Processing triggers for man-db (2.12.1-3) ...
146s Processing triggers for install-info (7.1.1-1) ...
146s Processing triggers for libc-bin (2.40-1ubuntu3) ...
150s (Reading database ... 85737 files and directories currently installed.)
150s Removing autopkgtest-satdep (0) ...
151s autopkgtest [10:33:58]: test command1: for py3 in `py3versions -s`; do $py3 -m pytest -v; done
151s autopkgtest [10:33:58]: test command1: [-----------------------
152s ============================= test session starts ==============================
152s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
152s cachedir: .pytest_cache
152s rootdir: /tmp/autopkgtest.kNWYe3/build.MiT/src
152s plugins: typeguard-4.4.1
152s collecting ... collected 0 items / 4 errors
152s 
152s ==================================== ERRORS ====================================
152s __________________ ERROR collecting gridData/tests/test_dx.py __________________
152s ImportError while importing test module '/tmp/autopkgtest.kNWYe3/build.MiT/src/gridData/tests/test_dx.py'.
152s Hint: make sure your test modules/packages have valid Python names.
152s Traceback:
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
152s     from . import multiarray
152s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
152s     from . import overrides
152s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
152s     from numpy.core._multiarray_umath import (
152s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
152s 
152s During handling of the above exception, another exception occurred:
152s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
152s     from numpy.__config__ import show as show_config
152s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
152s     from numpy.core._multiarray_umath import (
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
152s     raise ImportError(msg)
152s E   ImportError: 
152s E   
152s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
152s E   
152s E   Importing the numpy C-extensions failed. This error can happen for
152s E   many reasons, often due to issues with your setup or how NumPy was
152s E   installed.
152s E   
152s E   We have compiled some common reasons and troubleshooting tips at:
152s E   
152s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
152s E   
152s E   Please note and check the following:
152s E   
152s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
152s E     * The NumPy version is: "1.26.4"
152s E   
152s E   and make sure that they are the versions you expect.
152s E   Please carefully study the documentation linked above for further help.
152s E   
152s E   Original error was: No module named 'numpy.core._multiarray_umath'
152s 
152s The above exception was the direct cause of the following exception:
152s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
152s     return _bootstrap._gcd_import(name[level:], package, level)
152s gridData/__init__.py:109: in <module>
152s     from .core import Grid
152s gridData/core.py:30: in <module>
152s     import numpy
152s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
152s     raise ImportError(msg) from e
152s E   ImportError: Error importing numpy: you should not try to import numpy from
152s E           its source directory; please exit the numpy source tree, and relaunch
152s E           your python interpreter from there.
152s _______________ ERROR collecting gridData/tests/test_gOpenMol.py _______________
152s ImportError while importing test module '/tmp/autopkgtest.kNWYe3/build.MiT/src/gridData/tests/test_gOpenMol.py'.
152s Hint: make sure your test modules/packages have valid Python names.
152s Traceback:
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
152s     from . import multiarray
152s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
152s     from . import overrides
152s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
152s     from numpy.core._multiarray_umath import (
152s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
152s 
152s During handling of the above exception, another exception occurred:
152s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
152s     from numpy.__config__ import show as show_config
152s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
152s     from numpy.core._multiarray_umath import (
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
152s     raise ImportError(msg)
152s E   ImportError: 
152s E   
152s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
152s E   
152s E   Importing the numpy C-extensions failed. This error can happen for
152s E   many reasons, often due to issues with your setup or how NumPy was
152s E   installed.
152s E   
152s E   We have compiled some common reasons and troubleshooting tips at:
152s E   
152s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
152s E   
152s E   Please note and check the following:
152s E   
152s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
152s E     * The NumPy version is: "1.26.4"
152s E   
152s E   and make sure that they are the versions you expect.
152s E   Please carefully study the documentation linked above for further help.
152s E   
152s E   Original error was: No module named 'numpy.core._multiarray_umath'
152s 
152s The above exception was the direct cause of the following exception:
152s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
152s     return _bootstrap._gcd_import(name[level:], package, level)
152s gridData/__init__.py:109: in <module>
152s     from .core import Grid
152s gridData/core.py:30: in <module>
152s     import numpy
152s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
152s     raise ImportError(msg) from e
152s E   ImportError: Error importing numpy: you should not try to import numpy from
152s E           its source directory; please exit the numpy source tree, and relaunch
152s E           your python interpreter from there.
152s _________________ ERROR collecting gridData/tests/test_grid.py _________________
152s ImportError while importing test module '/tmp/autopkgtest.kNWYe3/build.MiT/src/gridData/tests/test_grid.py'.
152s Hint: make sure your test modules/packages have valid Python names.
152s Traceback:
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
152s     from . import multiarray
152s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
152s     from . import overrides
152s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
152s     from numpy.core._multiarray_umath import (
152s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
152s 
152s During handling of the above exception, another exception occurred:
152s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
152s     from numpy.__config__ import show as show_config
152s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
152s     from numpy.core._multiarray_umath import (
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
152s     raise ImportError(msg)
152s E   ImportError: 
152s E   
152s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
152s E   
152s E   Importing the numpy C-extensions failed. This error can happen for
152s E   many reasons, often due to issues with your setup or how NumPy was
152s E   installed.
152s E   
152s E   We have compiled some common reasons and troubleshooting tips at:
152s E   
152s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
152s E   
152s E   Please note and check the following:
152s E   
152s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
152s E     * The NumPy version is: "1.26.4"
152s E   
152s E   and make sure that they are the versions you expect.
152s E   Please carefully study the documentation linked above for further help.
152s E   
152s E   Original error was: No module named 'numpy.core._multiarray_umath'
152s 
152s The above exception was the direct cause of the following exception:
152s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
152s     return _bootstrap._gcd_import(name[level:], package, level)
152s gridData/__init__.py:109: in <module>
152s     from .core import Grid
152s gridData/core.py:30: in <module>
152s     import numpy
152s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
152s     raise ImportError(msg) from e
152s E   ImportError: Error importing numpy: you should not try to import numpy from
152s E           its source directory; please exit the numpy source tree, and relaunch
152s E           your python interpreter from there.
152s _________________ ERROR collecting gridData/tests/test_mrc.py __________________
152s ImportError while importing test module '/tmp/autopkgtest.kNWYe3/build.MiT/src/gridData/tests/test_mrc.py'.
152s Hint: make sure your test modules/packages have valid Python names.
152s Traceback:
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
152s     from . import multiarray
152s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
152s     from . import overrides
152s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
152s     from numpy.core._multiarray_umath import (
152s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
152s 
152s During handling of the above exception, another exception occurred:
152s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
152s     from numpy.__config__ import show as show_config
152s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
152s     from numpy.core._multiarray_umath import (
152s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
152s     raise ImportError(msg)
152s E   ImportError: 
152s E   
152s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
152s E   
152s E   Importing the numpy C-extensions failed. This error can happen for
152s E   many reasons, often due to issues with your setup or how NumPy was
152s E   installed.
152s E   
152s E   We have compiled some common reasons and troubleshooting tips at:
152s E   
152s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
152s E   
152s E   Please note and check the following:
152s E   
152s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
152s E     * The NumPy version is: "1.26.4"
152s E   
152s E   and make sure that they are the versions you expect.
152s E   Please carefully study the documentation linked above for further help.
152s E   
152s E   Original error was: No module named 'numpy.core._multiarray_umath'
152s 
152s The above exception was the direct cause of the following exception:
152s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
152s     return _bootstrap._gcd_import(name[level:], package, level)
152s gridData/__init__.py:109: in <module>
152s     from .core import Grid
152s gridData/core.py:30: in <module>
152s     import numpy
152s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
152s     raise ImportError(msg) from e
152s E   ImportError: Error importing numpy: you should not try to import numpy from
152s E           its source directory; please exit the numpy source tree, and relaunch
152s E           your python interpreter from there.
152s =========================== short test summary info ============================
152s ERROR gridData/tests/test_dx.py
152s ERROR gridData/tests/test_gOpenMol.py
152s ERROR gridData/tests/test_grid.py
152s ERROR gridData/tests/test_mrc.py
152s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!!
152s ============================== 4 errors in 0.29s ===============================
153s autopkgtest [10:34:00]: test command1: -----------------------]
153s command1             FAIL non-zero exit status 2
153s autopkgtest [10:34:00]: test command1:  - - - - - - - - - - results - - - - - - - - - -
154s autopkgtest [10:34:01]: @@@@@@@@@@@@@@@@@@@@ summary
154s command1             FAIL non-zero exit status 2
173s virt: nova [W] Skipping flock in bos03-arm64
173s virt: Creating nova instance adt-plucky-arm64-python-griddataformats-20241113-103127-juju-7f2275-prod-proposed-migration-environment-2-4c682355-76eb-42c6-8671-0f407c6cb8ea from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...