0s autopkgtest [18:24:50]: starting date and time: 2025-01-03 18:24:50+0000 0s autopkgtest [18:24:50]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:24:50]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i5jb6omi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-gffutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-28.secgroup --name adt-plucky-arm64-python-gffutils-20250103-182450-juju-7f2275-prod-proposed-migration-environment-20-a45579d4-fee8-4d62-b631-b55747f0c789 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 158s autopkgtest [18:27:28]: testbed dpkg architecture: arm64 158s autopkgtest [18:27:28]: testbed apt version: 2.9.18 159s autopkgtest [18:27:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 159s autopkgtest [18:27:29]: testbed release detected to be: None 160s autopkgtest [18:27:30]: updating testbed package index (apt update) 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 160s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 160s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 160s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB] 161s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 161s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [777 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [99.9 kB] 161s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB] 161s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [840 kB] 161s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [12.2 kB] 161s Fetched 1955 kB in 1s (2172 kB/s) 162s Reading package lists... 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Calculating upgrade... 164s The following packages will be upgraded: 164s base-passwd bash-completion binutils binutils-aarch64-linux-gnu 164s binutils-common libbinutils libctf-nobfd0 libctf0 libgprofng0 libsframe1 164s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Need to get 5715 kB of archives. 164s After this operation, 143 kB of additional disk space will be used. 164s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 base-passwd arm64 3.6.6 [53.6 kB] 164s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 bash-completion all 1:2.16.0-1 [214 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgprofng0 arm64 2.43.50.20241230-1ubuntu1 [781 kB] 164s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf0 arm64 2.43.50.20241230-1ubuntu1 [99.0 kB] 164s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf-nobfd0 arm64 2.43.50.20241230-1ubuntu1 [102 kB] 164s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-aarch64-linux-gnu arm64 2.43.50.20241230-1ubuntu1 [3421 kB] 164s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libbinutils arm64 2.43.50.20241230-1ubuntu1 [782 kB] 164s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils arm64 2.43.50.20241230-1ubuntu1 [3254 B] 164s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-common arm64 2.43.50.20241230-1ubuntu1 [245 kB] 164s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsframe1 arm64 2.43.50.20241230-1ubuntu1 [14.3 kB] 165s Preconfiguring packages ... 165s Fetched 5715 kB in 1s (7442 kB/s) 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 165s Preparing to unpack .../base-passwd_3.6.6_arm64.deb ... 165s Unpacking base-passwd (3.6.6) over (3.6.5) ... 165s Setting up base-passwd (3.6.6) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 166s Preparing to unpack .../0-bash-completion_1%3a2.16.0-1_all.deb ... 166s Unpacking bash-completion (1:2.16.0-1) over (1:2.14.0-2) ... 166s Preparing to unpack .../1-libgprofng0_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../2-libctf0_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking libctf0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../3-libctf-nobfd0_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../4-binutils-aarch64-linux-gnu_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../5-libbinutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking libbinutils:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../6-binutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../7-binutils-common_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking binutils-common:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Preparing to unpack .../8-libsframe1_2.43.50.20241230-1ubuntu1_arm64.deb ... 166s Unpacking libsframe1:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 166s Setting up binutils-common:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up libsframe1:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up bash-completion (1:2.16.0-1) ... 166s Setting up libbinutils:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up libctf0:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) ... 166s Setting up binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) ... 166s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 166s Processing triggers for libc-bin (2.40-4ubuntu1) ... 166s Processing triggers for man-db (2.13.0-1) ... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 169s autopkgtest [18:27:39]: upgrading testbed (apt dist-upgrade and autopurge) 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 171s Entering ResolveByKeep 171s 171s The following packages were automatically installed and are no longer required: 171s python3.12 python3.12-minimal 171s Use 'sudo apt autoremove' to remove them. 172s The following NEW packages will be installed: 172s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 172s The following packages will be upgraded: 172s libpython3-stdlib python3 python3-minimal 172s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 172s Need to get 5992 kB of archives. 172s After this operation, 24.3 MB of additional disk space will be used. 172s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.1-2 [879 kB] 172s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.1-2 [2262 kB] 172s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.13.1-1~exp2 [27.6 kB] 172s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.13.1-1~exp2 [23.9 kB] 172s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.1-2 [2061 kB] 172s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.1-2 [729 kB] 172s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.13.1-1~exp2 [10.2 kB] 173s Fetched 5992 kB in 1s (7812 kB/s) 173s Selecting previously unselected package libpython3.13-minimal:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80185 files and directories currently installed.) 173s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_arm64.deb ... 173s Unpacking libpython3.13-minimal:arm64 (3.13.1-2) ... 173s Selecting previously unselected package python3.13-minimal. 173s Preparing to unpack .../python3.13-minimal_3.13.1-2_arm64.deb ... 173s Unpacking python3.13-minimal (3.13.1-2) ... 173s Setting up libpython3.13-minimal:arm64 (3.13.1-2) ... 173s Setting up python3.13-minimal (3.13.1-2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 174s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_arm64.deb ... 174s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 174s Setting up python3-minimal (3.13.1-1~exp2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 174s Preparing to unpack .../python3_3.13.1-1~exp2_arm64.deb ... 174s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 174s Selecting previously unselected package libpython3.13-stdlib:arm64. 174s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_arm64.deb ... 174s Unpacking libpython3.13-stdlib:arm64 (3.13.1-2) ... 174s Selecting previously unselected package python3.13. 174s Preparing to unpack .../python3.13_3.13.1-2_arm64.deb ... 174s Unpacking python3.13 (3.13.1-2) ... 175s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_arm64.deb ... 175s Unpacking libpython3-stdlib:arm64 (3.13.1-1~exp2) over (3.12.8-1) ... 175s Setting up libpython3.13-stdlib:arm64 (3.13.1-2) ... 175s Setting up libpython3-stdlib:arm64 (3.13.1-1~exp2) ... 175s Setting up python3.13 (3.13.1-2) ... 176s Setting up python3 (3.13.1-1~exp2) ... 176s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 176s for fn in glob1(directory, "%s.*" % fname): 176s Processing triggers for man-db (2.13.0-1) ... 176s Processing triggers for systemd (257-2ubuntu1) ... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Starting pkgProblemResolver with broken count: 0 177s Starting 2 pkgProblemResolver with broken count: 0 177s Done 178s The following packages will be REMOVED: 178s python3.12* python3.12-minimal* 178s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 178s After this operation, 8710 kB disk space will be freed. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80922 files and directories currently installed.) 178s Removing python3.12 (3.12.8-3) ... 179s Removing python3.12-minimal (3.12.8-3) ... 179s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 179s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 179s Processing triggers for man-db (2.13.0-1) ... 179s Processing triggers for systemd (257-2ubuntu1) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 180s Purging configuration files for python3.12-minimal (3.12.8-3) ... 182s autopkgtest [18:27:52]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 182s autopkgtest [18:27:52]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gffutils 184s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (dsc) [2351 B] 184s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (tar) [1560 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (diff) [5024 B] 185s gpgv: Signature made Sat Apr 13 20:25:45 2024 UTC 185s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 185s gpgv: issuer "tchet@debian.org" 185s gpgv: Can't check signature: No public key 185s dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-1.dsc: no acceptable signature found 185s autopkgtest [18:27:55]: testing package python-gffutils version 0.13-1 185s autopkgtest [18:27:55]: build not needed 186s autopkgtest [18:27:56]: test run-unit-test: preparing testbed 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 187s The following NEW packages will be installed: 187s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 187s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 187s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 187s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 187s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 187s libxcb-shm0 libxrender1 python3-argcomplete python3-argh python3-biopython 187s python3-cairo python3-freetype python3-gffutils python3-importlib-metadata 187s python3-iniconfig python3-numpy python3-packaging python3-pil python3-pluggy 187s python3-pyfaidx python3-pytest python3-reportlab python3-rlpycairo 187s python3-simplejson sgml-base w3c-sgml-lib x11-common xfonts-encodings 187s xfonts-utils xml-core 188s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 188s Need to get 28.4 MB of archives. 188s After this operation, 104 MB of additional disk space will be used. 188s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 188s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 188s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 188s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 188s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 188s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 188s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 188s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 188s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 188s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 188s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 188s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 188s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 188s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 188s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 188s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 188s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 188s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-12ubuntu1 [437 kB] 188s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-12ubuntu1 [145 kB] 188s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 188s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.1.0-1 [489 kB] 188s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 188s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 188s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 188s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 189s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 189s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 189s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 189s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 189s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 189s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 189s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 189s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 189s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 189s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-argcomplete all 3.5.1-1ubuntu1 [35.6 kB] 189s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [4153 kB] 189s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu2 [182 kB] 189s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu2 [473 kB] 189s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2build1 [139 kB] 189s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 189s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 189s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 189s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 189s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 189s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4build1 [1694 kB] 189s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-argh all 0.31.3-1 [27.0 kB] 189s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-importlib-metadata all 8.5.0-1 [20.7 kB] 189s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 189s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 189s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-simplejson arm64 3.19.3-1build1 [54.3 kB] 189s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gffutils all 0.13-1 [1081 kB] 189s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 189s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 189s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 189s Fetched 28.4 MB in 1s (19.4 MB/s) 189s Selecting previously unselected package sgml-base. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 189s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 189s Unpacking sgml-base (1.31) ... 189s Selecting previously unselected package fonts-dejavu-mono. 189s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-mono (2.37-8) ... 189s Selecting previously unselected package fonts-dejavu-core. 189s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-core (2.37-8) ... 190s Selecting previously unselected package libfontenc1:arm64. 190s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 190s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 190s Selecting previously unselected package x11-common. 190s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 190s Unpacking x11-common (1:7.7+23ubuntu3) ... 190s Selecting previously unselected package xfonts-encodings. 190s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 190s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 190s Selecting previously unselected package xfonts-utils. 190s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_arm64.deb ... 190s Unpacking xfonts-utils (1:7.7+7) ... 190s Selecting previously unselected package fonts-urw-base35. 190s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 190s Unpacking fonts-urw-base35 (20200910-8) ... 190s Selecting previously unselected package fontconfig-config. 190s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 190s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 190s Selecting previously unselected package libblas3:arm64. 190s Preparing to unpack .../09-libblas3_3.12.0-4_arm64.deb ... 190s Unpacking libblas3:arm64 (3.12.0-4) ... 190s Selecting previously unselected package libfontconfig1:arm64. 190s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 190s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 190s Selecting previously unselected package libpixman-1-0:arm64. 190s Preparing to unpack .../11-libpixman-1-0_0.44.0-3_arm64.deb ... 190s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 190s Selecting previously unselected package libxcb-render0:arm64. 190s Preparing to unpack .../12-libxcb-render0_1.17.0-2_arm64.deb ... 190s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 190s Selecting previously unselected package libxcb-shm0:arm64. 190s Preparing to unpack .../13-libxcb-shm0_1.17.0-2_arm64.deb ... 190s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 190s Selecting previously unselected package libxrender1:arm64. 190s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 190s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 190s Selecting previously unselected package libcairo2:arm64. 190s Preparing to unpack .../15-libcairo2_1.18.2-2_arm64.deb ... 190s Unpacking libcairo2:arm64 (1.18.2-2) ... 191s Selecting previously unselected package libdeflate0:arm64. 191s Preparing to unpack .../16-libdeflate0_1.22-1_arm64.deb ... 191s Unpacking libdeflate0:arm64 (1.22-1) ... 191s Selecting previously unselected package libgfortran5:arm64. 191s Preparing to unpack .../17-libgfortran5_14.2.0-12ubuntu1_arm64.deb ... 191s Unpacking libgfortran5:arm64 (14.2.0-12ubuntu1) ... 191s Selecting previously unselected package libgomp1:arm64. 191s Preparing to unpack .../18-libgomp1_14.2.0-12ubuntu1_arm64.deb ... 191s Unpacking libgomp1:arm64 (14.2.0-12ubuntu1) ... 191s Selecting previously unselected package libgraphite2-3:arm64. 191s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 191s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 191s Selecting previously unselected package libharfbuzz0b:arm64. 191s Preparing to unpack .../20-libharfbuzz0b_10.1.0-1_arm64.deb ... 191s Unpacking libharfbuzz0b:arm64 (10.1.0-1) ... 191s Selecting previously unselected package libimagequant0:arm64. 191s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_arm64.deb ... 191s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 191s Selecting previously unselected package libjpeg-turbo8:arm64. 191s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 191s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 191s Selecting previously unselected package libjpeg8:arm64. 191s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_arm64.deb ... 191s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 191s Selecting previously unselected package liblapack3:arm64. 191s Preparing to unpack .../24-liblapack3_3.12.0-4_arm64.deb ... 191s Unpacking liblapack3:arm64 (3.12.0-4) ... 191s Selecting previously unselected package liblcms2-2:arm64. 191s Preparing to unpack .../25-liblcms2-2_2.16-2_arm64.deb ... 191s Unpacking liblcms2-2:arm64 (2.16-2) ... 191s Selecting previously unselected package liblerc4:arm64. 191s Preparing to unpack .../26-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 191s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 191s Selecting previously unselected package libraqm0:arm64. 191s Preparing to unpack .../27-libraqm0_0.10.2-1_arm64.deb ... 191s Unpacking libraqm0:arm64 (0.10.2-1) ... 191s Selecting previously unselected package libsharpyuv0:arm64. 191s Preparing to unpack .../28-libsharpyuv0_1.4.0-0.1_arm64.deb ... 191s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 191s Selecting previously unselected package libjbig0:arm64. 191s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 191s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 191s Selecting previously unselected package libwebp7:arm64. 191s Preparing to unpack .../30-libwebp7_1.4.0-0.1_arm64.deb ... 191s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 191s Selecting previously unselected package libtiff6:arm64. 191s Preparing to unpack .../31-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 191s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 191s Selecting previously unselected package libwebpdemux2:arm64. 191s Preparing to unpack .../32-libwebpdemux2_1.4.0-0.1_arm64.deb ... 191s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 191s Selecting previously unselected package libwebpmux3:arm64. 191s Preparing to unpack .../33-libwebpmux3_1.4.0-0.1_arm64.deb ... 191s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 191s Selecting previously unselected package python3-argcomplete. 191s Preparing to unpack .../34-python3-argcomplete_3.5.1-1ubuntu1_all.deb ... 191s Unpacking python3-argcomplete (3.5.1-1ubuntu1) ... 191s Selecting previously unselected package python3-numpy. 191s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... 191s Unpacking python3-numpy (1:1.26.4+ds-12) ... 191s Selecting previously unselected package libopenjp2-7:arm64. 191s Preparing to unpack .../36-libopenjp2-7_2.5.0-2ubuntu2_arm64.deb ... 191s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu2) ... 191s Selecting previously unselected package python3-pil:arm64. 192s Preparing to unpack .../37-python3-pil_10.4.0-1ubuntu2_arm64.deb ... 192s Unpacking python3-pil:arm64 (10.4.0-1ubuntu2) ... 192s Selecting previously unselected package python3-cairo. 192s Preparing to unpack .../38-python3-cairo_1.26.1-2build1_arm64.deb ... 192s Unpacking python3-cairo (1.26.1-2build1) ... 192s Selecting previously unselected package python3-freetype. 192s Preparing to unpack .../39-python3-freetype_2.5.1-1_all.deb ... 192s Unpacking python3-freetype (2.5.1-1) ... 192s Selecting previously unselected package python3-rlpycairo. 192s Preparing to unpack .../40-python3-rlpycairo_0.3.0-3_all.deb ... 192s Unpacking python3-rlpycairo (0.3.0-3) ... 192s Selecting previously unselected package python3-reportlab. 192s Preparing to unpack .../41-python3-reportlab_4.2.5-1_all.deb ... 192s Unpacking python3-reportlab (4.2.5-1) ... 192s Selecting previously unselected package xml-core. 192s Preparing to unpack .../42-xml-core_0.19_all.deb ... 192s Unpacking xml-core (0.19) ... 192s Selecting previously unselected package w3c-sgml-lib. 192s Preparing to unpack .../43-w3c-sgml-lib_1.3-3_all.deb ... 192s Unpacking w3c-sgml-lib (1.3-3) ... 192s Selecting previously unselected package python3-biopython. 192s Preparing to unpack .../44-python3-biopython_1.84+dfsg-4build1_arm64.deb ... 192s Unpacking python3-biopython (1.84+dfsg-4build1) ... 192s Selecting previously unselected package python3-argh. 192s Preparing to unpack .../45-python3-argh_0.31.3-1_all.deb ... 192s Unpacking python3-argh (0.31.3-1) ... 192s Selecting previously unselected package python3-importlib-metadata. 192s Preparing to unpack .../46-python3-importlib-metadata_8.5.0-1_all.deb ... 192s Unpacking python3-importlib-metadata (8.5.0-1) ... 192s Selecting previously unselected package python3-packaging. 192s Preparing to unpack .../47-python3-packaging_24.2-1_all.deb ... 192s Unpacking python3-packaging (24.2-1) ... 192s Selecting previously unselected package python3-pyfaidx. 192s Preparing to unpack .../48-python3-pyfaidx_0.8.1.3-1_all.deb ... 192s Unpacking python3-pyfaidx (0.8.1.3-1) ... 192s Selecting previously unselected package python3-simplejson. 192s Preparing to unpack .../49-python3-simplejson_3.19.3-1build1_arm64.deb ... 192s Unpacking python3-simplejson (3.19.3-1build1) ... 192s Selecting previously unselected package python3-gffutils. 192s Preparing to unpack .../50-python3-gffutils_0.13-1_all.deb ... 192s Unpacking python3-gffutils (0.13-1) ... 192s Selecting previously unselected package python3-iniconfig. 192s Preparing to unpack .../51-python3-iniconfig_1.1.1-2_all.deb ... 192s Unpacking python3-iniconfig (1.1.1-2) ... 192s Selecting previously unselected package python3-pluggy. 192s Preparing to unpack .../52-python3-pluggy_1.5.0-1_all.deb ... 192s Unpacking python3-pluggy (1.5.0-1) ... 192s Selecting previously unselected package python3-pytest. 192s Preparing to unpack .../53-python3-pytest_8.3.3-1_all.deb ... 192s Unpacking python3-pytest (8.3.3-1) ... 192s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 192s Setting up liblcms2-2:arm64 (2.16-2) ... 192s Setting up python3-iniconfig (1.1.1-2) ... 193s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 193s Setting up python3-argh (0.31.3-1) ... 193s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 193s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 193s Setting up python3-importlib-metadata (8.5.0-1) ... 193s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 193s Setting up libxcb-render0:arm64 (1.17.0-2) ... 193s Setting up x11-common (1:7.7+23ubuntu3) ... 193s Setting up libdeflate0:arm64 (1.22-1) ... 193s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 193s Setting up libgomp1:arm64 (14.2.0-12ubuntu1) ... 193s Setting up python3-freetype (2.5.1-1) ... 193s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 193s Setting up python3-simplejson (3.19.3-1build1) ... 193s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 193s Setting up libblas3:arm64 (3.12.0-4) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 194s Setting up python3-packaging (24.2-1) ... 194s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 194s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 194s Setting up fonts-dejavu-mono (2.37-8) ... 194s Setting up fonts-dejavu-core (2.37-8) ... 194s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 194s Setting up libgfortran5:arm64 (14.2.0-12ubuntu1) ... 194s Setting up python3-pluggy (1.5.0-1) ... 194s Setting up libwebp7:arm64 (1.4.0-0.1) ... 194s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu2) ... 194s Setting up libharfbuzz0b:arm64 (10.1.0-1) ... 194s Setting up sgml-base (1.31) ... 194s Setting up python3-argcomplete (3.5.1-1ubuntu1) ... 194s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 194s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 194s Setting up python3-pyfaidx (0.8.1.3-1) ... 194s Setting up liblapack3:arm64 (3.12.0-4) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 194s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 194s Setting up python3-pytest (8.3.3-1) ... 195s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 195s Setting up xfonts-utils (1:7.7+7) ... 195s Setting up libraqm0:arm64 (0.10.2-1) ... 195s Setting up python3-numpy (1:1.26.4+ds-12) ... 196s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 196s Setting up xml-core (0.19) ... 197s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 197s Setting up fonts-urw-base35 (20200910-8) ... 197s Setting up libcairo2:arm64 (1.18.2-2) ... 197s Setting up python3-pil:arm64 (10.4.0-1ubuntu2) ... 197s Setting up python3-cairo (1.26.1-2build1) ... 197s Setting up python3-rlpycairo (0.3.0-3) ... 197s Setting up python3-reportlab (4.2.5-1) ... 198s Processing triggers for libc-bin (2.40-4ubuntu1) ... 198s Processing triggers for man-db (2.13.0-1) ... 199s Processing triggers for sgml-base (1.31) ... 199s Setting up w3c-sgml-lib (1.3-3) ... 225s Setting up python3-biopython (1.84+dfsg-4build1) ... 226s Setting up python3-gffutils (0.13-1) ... 227s autopkgtest [18:28:37]: test run-unit-test: [----------------------- 228s + pkg=python-gffutils 228s + [ /tmp/autopkgtest.VzRUKl/autopkgtest_tmp = ] 228s + cd /tmp/autopkgtest.VzRUKl/autopkgtest_tmp 228s + export HOME=/tmp/autopkgtest.VzRUKl/autopkgtest_tmp 228s + cp -r /usr/lib/python3/dist-packages/gffutils/test ./ 228s + pytest --doctest-modules -m not slow test 228s ============================= test session starts ============================== 228s platform linux -- Python 3.13.1, pytest-8.3.3, pluggy-1.5.0 228s rootdir: /tmp/autopkgtest.VzRUKl/autopkgtest_tmp 228s plugins: typeguard-4.4.1 228s collected 110 items 228s 228s test/feature_test.py ........... [ 10%] 228s test/helpers_test.py .. [ 11%] 228s test/parser_test.py .................. [ 28%] 229s test/test_1.py ...........x..........s........... [ 59%] 229s test/test_biopython_integration.py . [ 60%] 232s test/test_cli.py . [ 60%] 232s test/test_issues.py ........................ [ 82%] 232s test/test_iterators.py .... [ 86%] 232s test/test_merge.py ......... [ 94%] 232s test/test_merge_all.py ...... [100%] 232s 232s =============================== warnings summary =============================== 232s test/performance_evaluation.py:190 232s /tmp/autopkgtest.VzRUKl/autopkgtest_tmp/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 232s @pytest.mark.slow 232s 232s test/performance_evaluation.py:208 232s /tmp/autopkgtest.VzRUKl/autopkgtest_tmp/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 232s @pytest.mark.slow 232s 232s test/test_1.py:485 232s test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored 232s def test_region(): 232s 232s test/parser_test.py::test_parser_from_string 232s /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? 232s warnings.warn( 232s 232s test/parser_test.py::test_inconsistent_dialect 232s test/test_1.py::test_disable_infer 232s test/test_issues.py::test_pr_172 232s /usr/lib/python3/dist-packages/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation 232s warnings.warn( 232s 232s test/test_1.py::test_disable_infer 232s /usr/lib/python3/dist-packages/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation 232s warnings.warn( 232s 232s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 232s ============ 108 passed, 1 skipped, 1 xfailed, 8 warnings in 3.93s ============= 232s autopkgtest [18:28:42]: test run-unit-test: -----------------------] 233s autopkgtest [18:28:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 233s run-unit-test PASS 233s autopkgtest [18:28:43]: @@@@@@@@@@@@@@@@@@@@ summary 233s run-unit-test PASS 262s nova [W] Using flock in prodstack6-arm64 262s flock: timeout while waiting to get lock 262s Creating nova instance adt-plucky-arm64-python-gffutils-20250103-182450-juju-7f2275-prod-proposed-migration-environment-20-a45579d4-fee8-4d62-b631-b55747f0c789 from image adt/ubuntu-plucky-arm64-server-20250102.img (UUID 4cb073f4-4206-4362-b576-2406cb25ddd8)... 262s nova [W] Timed out waiting for 63a251ad-751a-4e8f-85d8-43d45659fbcc to get deleted.