0s autopkgtest [12:32:35]: starting date and time: 2025-02-19 12:32:35+0000 0s autopkgtest [12:32:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:32:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0pnx3sdt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-fabio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-39.secgroup --name adt-plucky-arm64-python-fabio-20250219-123235-juju-7f2275-prod-proposed-migration-environment-20-12ac721f-9d25-42c1-a742-520a6a9f0ece --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 145s autopkgtest [12:35:00]: testbed dpkg architecture: arm64 145s autopkgtest [12:35:00]: testbed apt version: 2.9.29 146s autopkgtest [12:35:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 146s autopkgtest [12:35:01]: testbed release detected to be: None 147s autopkgtest [12:35:02]: updating testbed package index (apt update) 147s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 147s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 148s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 148s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 148s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 148s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 148s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [93.3 kB] 148s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B] 148s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [686 kB] 148s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [11.2 kB] 148s Fetched 1752 kB in 1s (1698 kB/s) 150s Reading package lists... 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade... 152s The following NEW packages will be installed: 152s libapt-pkg7.0 152s The following packages will be upgraded: 152s apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog 152s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 4842 kB of archives. 152s After this operation, 3409 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg7.0 arm64 2.9.30 [1023 kB] 153s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.30 [1364 kB] 153s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.30 [207 kB] 153s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB] 153s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit0 arm64 0.25.5-2ubuntu3 [280 kB] 154s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 rsyslog arm64 8.2412.0-2ubuntu1 [521 kB] 154s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.4+dfsg-1 [236 kB] 154s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.4+dfsg-1 [53.9 kB] 154s Preconfiguring packages ... 154s Fetched 4842 kB in 2s (2838 kB/s) 154s Selecting previously unselected package libapt-pkg7.0:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116620 files and directories currently installed.) 155s Preparing to unpack .../libapt-pkg7.0_2.9.30_arm64.deb ... 155s Unpacking libapt-pkg7.0:arm64 (2.9.30) ... 155s Setting up libapt-pkg7.0:arm64 (2.9.30) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 155s Preparing to unpack .../archives/apt_2.9.30_arm64.deb ... 155s Unpacking apt (2.9.30) over (2.9.29) ... 155s Setting up apt (2.9.30) ... 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 156s Preparing to unpack .../0-apt-utils_2.9.30_arm64.deb ... 156s Unpacking apt-utils (2.9.30) over (2.9.29) ... 157s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_arm64.deb ... 157s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 157s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_arm64.deb ... 157s Unpacking libp11-kit0:arm64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 157s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_arm64.deb ... 157s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ... 157s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_arm64.deb ... 157s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 157s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_arm64.deb ... 157s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 157s Setting up apt-utils (2.9.30) ... 157s Setting up liblsof0 (4.99.4+dfsg-1) ... 157s Setting up iproute2 (6.13.0-1ubuntu1) ... 158s Setting up rsyslog (8.2412.0-2ubuntu1) ... 158s info: The user `syslog' is already a member of `adm'. 159s Setting up libp11-kit0:arm64 (0.25.5-2ubuntu3) ... 159s Setting up lsof (4.99.4+dfsg-1) ... 159s Processing triggers for man-db (2.13.0-1) ... 162s Processing triggers for libc-bin (2.40-4ubuntu1) ... 163s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s autopkgtest [12:35:20]: upgrading testbed (apt dist-upgrade and autopurge) 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 166s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s Entering ResolveByKeep 167s 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s autopkgtest [12:35:25]: rebooting testbed after setup commands that affected boot 193s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 200s autopkgtest [12:35:55]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 15:49:33 UTC 2025 203s autopkgtest [12:35:58]: @@@@@@@@@@@@@@@@@@@@ apt-source python-fabio 207s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2build1 (dsc) [2877 B] 207s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2build1 (tar) [726 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2build1 (diff) [9172 B] 207s gpgv: Signature made Fri Nov 15 13:41:33 2024 UTC 207s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./python-fabio_2024.4.0-2build1.dsc: no acceptable signature found 207s autopkgtest [12:36:02]: testing package python-fabio version 2024.4.0-2build1 208s autopkgtest [12:36:03]: build not needed 208s autopkgtest [12:36:03]: test command1: preparing testbed 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s Starting pkgProblemResolver with broken count: 0 210s Starting 2 pkgProblemResolver with broken count: 0 210s Done 210s The following NEW packages will be installed: 210s blt fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 210s fonts-lyx libaec0 libavahi-client3 libavahi-common-data libavahi-common3 210s libblas3 libcups2t64 libdeflate0 libdouble-conversion3 libdrm-radeon1 210s libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 libgl1 210s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 210s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 210s libimagequant0 libinput-bin libinput10 libjbig0 libjpeg-turbo8 libjpeg8 210s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 210s liblzf1 libmd4c0 libmtdev1t64 libopenjp2-7 libpcre2-16-0 libqhull-r8.0 210s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 210s libqt5network5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 210s libqt5widgets5t64 libqt5xml5t64 libraqm0 libsharpyuv0 libsm6 libsz2 210s libtcl8.6 libtiff6 libtk8.6 libvulkan1 libwacom-common libwacom9 210s libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 210s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 210s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 210s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 210s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxft2 210s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxxf86vm1 210s mesa-libgallium python-matplotlib-data python3-all python3-brotli 210s python3-contourpy python3-cycler python3-dateutil python3-decorator 210s python3-fabio python3-fonttools python3-fs python3-h5py python3-h5py-serial 210s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 210s python3-mpmath python3-numpy python3-packaging python3-pil 210s python3-pil.imagetk python3-platformdirs python3-pyqt5 python3-pyqt5.sip 210s python3-pytz python3-scipy python3-sympy python3-tk python3-tz 210s python3-ufolib2 python3.12 python3.12-minimal python3.12-tk python3.13-tk 210s tk8.6-blt2.5 unicode-data x11-common 211s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 93.5 MB of archives. 211s After this operation, 429 MB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-minimal arm64 3.12.9-1 [2236 kB] 212s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12 arm64 3.12.9-1 [671 kB] 212s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 212s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 212s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 212s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 212s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 212s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 212s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 212s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 212s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 212s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 213s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 213s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 213s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 213s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 213s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 213s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-14ubuntu1 [30.5 kB] 213s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-14ubuntu1 [23.1 kB] 213s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-14ubuntu1 [27.3 kB] 213s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 213s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.11-0ubuntu2 [274 kB] 213s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 213s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB] 213s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-radeon1 arm64 2.4.123-1 [20.8 kB] 213s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.1-1 [35.9 kB] 213s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libglapi-mesa arm64 24.3.4-3ubuntu1 [59.5 kB] 213s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 213s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 213s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 213s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 213s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 213s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 213s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 213s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 24.3.4-3ubuntu1 [9301 kB] 214s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 24.3.4-3ubuntu1 [33.6 kB] 214s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.1-1 [26.8 kB] 214s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 214s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 24.3.4-3ubuntu1 [123 kB] 214s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB] 214s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 214s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 24.3.4-3ubuntu1 [35.3 kB] 214s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 214s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 214s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 24.3.4-3ubuntu1 [151 kB] 214s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB] 214s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 214s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 214s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 214s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 214s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 214s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 214s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 214s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.14.0-1 [103 kB] 214s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.14.0-1 [26.7 kB] 214s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.27.1-1 [23.5 kB] 214s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 214s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.27.1-1 [136 kB] 214s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 214s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 214s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 214s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 214s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 214s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 214s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 214s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 214s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 214s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 214s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 214s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 214s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-4ubuntu1 [1999 kB] 214s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4ubuntu1 [222 kB] 214s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 214s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 214s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 214s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 214s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-4ubuntu1 [735 kB] 214s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 214s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 214s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 214s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 215s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 215s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 215s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 215s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 215s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 215s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 215s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 215s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 215s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4ubuntu1 [3680 kB] 215s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4ubuntu1 [2568 kB] 215s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-4ubuntu1 [124 kB] 215s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-6 [2839 kB] 215s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-4ubuntu1 [123 kB] 215s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-6 [165 kB] 215s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-4ubuntu1 [209 kB] 215s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-4ubuntu1 [144 kB] 215s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 215s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 215s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 215s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 215s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 215s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 215s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 215s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 216s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 216s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.1-1~exp2 [894 B] 216s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build3 [342 kB] 216s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [4148 kB] 216s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1 [216 kB] 216s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 216s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 216s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 216s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB] 216s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B] 216s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 216s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-6 [90.7 kB] 216s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1 [1600 kB] 216s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1 [27.3 kB] 216s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu1 [19.5 MB] 217s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 217s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 218s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 218s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 218s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2 [1615 kB] 218s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.12.1-1 [1453 kB] 218s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.12.1-1 [7970 B] 218s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3 [62.5 kB] 218s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB] 218s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5 [491 kB] 218s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 218s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-1 [106 kB] 218s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 218s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5 [9948 B] 218s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 218s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3ubuntu2 [4616 kB] 218s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.17.0-1 [73.0 kB] 218s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-1build2 [2579 kB] 219s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fabio arm64 2024.4.0-2build1 [829 kB] 219s Fetched 93.5 MB in 8s (11.5 MB/s) 219s Selecting previously unselected package python3.12-minimal. 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116670 files and directories currently installed.) 220s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_arm64.deb ... 220s Unpacking python3.12-minimal (3.12.9-1) ... 220s Selecting previously unselected package python3.12. 220s Preparing to unpack .../001-python3.12_3.12.9-1_arm64.deb ... 220s Unpacking python3.12 (3.12.9-1) ... 220s Selecting previously unselected package libtcl8.6:arm64. 220s Preparing to unpack .../002-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 220s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 220s Selecting previously unselected package fonts-dejavu-mono. 220s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 220s Unpacking fonts-dejavu-mono (2.37-8) ... 220s Selecting previously unselected package fonts-dejavu-core. 220s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 220s Unpacking fonts-dejavu-core (2.37-8) ... 220s Selecting previously unselected package fontconfig-config. 220s Preparing to unpack .../005-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 220s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 220s Selecting previously unselected package libfontconfig1:arm64. 220s Preparing to unpack .../006-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 220s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 220s Selecting previously unselected package libxrender1:arm64. 220s Preparing to unpack .../007-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 220s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 220s Selecting previously unselected package libxft2:arm64. 220s Preparing to unpack .../008-libxft2_2.3.6-1build1_arm64.deb ... 220s Unpacking libxft2:arm64 (2.3.6-1build1) ... 220s Selecting previously unselected package x11-common. 221s Preparing to unpack .../009-x11-common_1%3a7.7+23ubuntu3_all.deb ... 221s Unpacking x11-common (1:7.7+23ubuntu3) ... 221s Selecting previously unselected package libxss1:arm64. 221s Preparing to unpack .../010-libxss1_1%3a1.2.3-1build3_arm64.deb ... 221s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 221s Selecting previously unselected package libtk8.6:arm64. 221s Preparing to unpack .../011-libtk8.6_8.6.16-1_arm64.deb ... 221s Unpacking libtk8.6:arm64 (8.6.16-1) ... 221s Selecting previously unselected package tk8.6-blt2.5. 221s Preparing to unpack .../012-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 221s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 221s Selecting previously unselected package blt. 221s Preparing to unpack .../013-blt_2.5.3+dfsg-7build1_arm64.deb ... 221s Unpacking blt (2.5.3+dfsg-7build1) ... 221s Selecting previously unselected package fontconfig. 221s Preparing to unpack .../014-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 221s Unpacking fontconfig (2.15.0-2ubuntu1) ... 221s Selecting previously unselected package fonts-lyx. 221s Preparing to unpack .../015-fonts-lyx_2.4.3-1_all.deb ... 221s Unpacking fonts-lyx (2.4.3-1) ... 221s Selecting previously unselected package libaec0:arm64. 221s Preparing to unpack .../016-libaec0_1.1.3-1_arm64.deb ... 221s Unpacking libaec0:arm64 (1.1.3-1) ... 221s Selecting previously unselected package libavahi-common-data:arm64. 221s Preparing to unpack .../017-libavahi-common-data_0.8-14ubuntu1_arm64.deb ... 221s Unpacking libavahi-common-data:arm64 (0.8-14ubuntu1) ... 221s Selecting previously unselected package libavahi-common3:arm64. 221s Preparing to unpack .../018-libavahi-common3_0.8-14ubuntu1_arm64.deb ... 221s Unpacking libavahi-common3:arm64 (0.8-14ubuntu1) ... 221s Selecting previously unselected package libavahi-client3:arm64. 221s Preparing to unpack .../019-libavahi-client3_0.8-14ubuntu1_arm64.deb ... 221s Unpacking libavahi-client3:arm64 (0.8-14ubuntu1) ... 221s Selecting previously unselected package libblas3:arm64. 221s Preparing to unpack .../020-libblas3_3.12.1-2_arm64.deb ... 221s Unpacking libblas3:arm64 (3.12.1-2) ... 221s Selecting previously unselected package libcups2t64:arm64. 221s Preparing to unpack .../021-libcups2t64_2.4.11-0ubuntu2_arm64.deb ... 221s Unpacking libcups2t64:arm64 (2.4.11-0ubuntu2) ... 221s Selecting previously unselected package libdeflate0:arm64. 221s Preparing to unpack .../022-libdeflate0_1.23-1_arm64.deb ... 221s Unpacking libdeflate0:arm64 (1.23-1) ... 221s Selecting previously unselected package libdouble-conversion3:arm64. 221s Preparing to unpack .../023-libdouble-conversion3_3.3.0-1build1_arm64.deb ... 221s Unpacking libdouble-conversion3:arm64 (3.3.0-1build1) ... 221s Selecting previously unselected package libdrm-radeon1:arm64. 221s Preparing to unpack .../024-libdrm-radeon1_2.4.123-1_arm64.deb ... 221s Unpacking libdrm-radeon1:arm64 (2.4.123-1) ... 221s Selecting previously unselected package libwayland-server0:arm64. 221s Preparing to unpack .../025-libwayland-server0_1.23.1-1_arm64.deb ... 221s Unpacking libwayland-server0:arm64 (1.23.1-1) ... 221s Selecting previously unselected package libglapi-mesa:arm64. 221s Preparing to unpack .../026-libglapi-mesa_24.3.4-3ubuntu1_arm64.deb ... 221s Unpacking libglapi-mesa:arm64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libx11-xcb1:arm64. 221s Preparing to unpack .../027-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 221s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 221s Selecting previously unselected package libxcb-dri3-0:arm64. 221s Preparing to unpack .../028-libxcb-dri3-0_1.17.0-2_arm64.deb ... 221s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 221s Selecting previously unselected package libxcb-present0:arm64. 221s Preparing to unpack .../029-libxcb-present0_1.17.0-2_arm64.deb ... 221s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-randr0:arm64. 222s Preparing to unpack .../030-libxcb-randr0_1.17.0-2_arm64.deb ... 222s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-sync1:arm64. 222s Preparing to unpack .../031-libxcb-sync1_1.17.0-2_arm64.deb ... 222s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-xfixes0:arm64. 222s Preparing to unpack .../032-libxcb-xfixes0_1.17.0-2_arm64.deb ... 222s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libxshmfence1:arm64. 222s Preparing to unpack .../033-libxshmfence1_1.3-1build5_arm64.deb ... 222s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 222s Selecting previously unselected package mesa-libgallium:arm64. 222s Preparing to unpack .../034-mesa-libgallium_24.3.4-3ubuntu1_arm64.deb ... 222s Unpacking mesa-libgallium:arm64 (24.3.4-3ubuntu1) ... 222s Selecting previously unselected package libgbm1:arm64. 222s Preparing to unpack .../035-libgbm1_24.3.4-3ubuntu1_arm64.deb ... 222s Unpacking libgbm1:arm64 (24.3.4-3ubuntu1) ... 222s Selecting previously unselected package libwayland-client0:arm64. 222s Preparing to unpack .../036-libwayland-client0_1.23.1-1_arm64.deb ... 222s Unpacking libwayland-client0:arm64 (1.23.1-1) ... 222s Selecting previously unselected package libxcb-shm0:arm64. 222s Preparing to unpack .../037-libxcb-shm0_1.17.0-2_arm64.deb ... 222s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libegl-mesa0:arm64. 222s Preparing to unpack .../038-libegl-mesa0_24.3.4-3ubuntu1_arm64.deb ... 222s Unpacking libegl-mesa0:arm64 (24.3.4-3ubuntu1) ... 222s Selecting previously unselected package libgfortran5:arm64. 222s Preparing to unpack .../039-libgfortran5_15-20250213-1ubuntu1_arm64.deb ... 222s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ... 222s Selecting previously unselected package libvulkan1:arm64. 222s Preparing to unpack .../040-libvulkan1_1.4.304.0-1_arm64.deb ... 222s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 222s Selecting previously unselected package libgl1-mesa-dri:arm64. 222s Preparing to unpack .../041-libgl1-mesa-dri_24.3.4-3ubuntu1_arm64.deb ... 222s Unpacking libgl1-mesa-dri:arm64 (24.3.4-3ubuntu1) ... 222s Selecting previously unselected package libxcb-glx0:arm64. 222s Preparing to unpack .../042-libxcb-glx0_1.17.0-2_arm64.deb ... 222s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 222s Selecting previously unselected package libxxf86vm1:arm64. 222s Preparing to unpack .../043-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 222s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 222s Selecting previously unselected package libglx-mesa0:arm64. 222s Preparing to unpack .../044-libglx-mesa0_24.3.4-3ubuntu1_arm64.deb ... 222s Unpacking libglx-mesa0:arm64 (24.3.4-3ubuntu1) ... 223s Selecting previously unselected package libgomp1:arm64. 223s Preparing to unpack .../045-libgomp1_15-20250213-1ubuntu1_arm64.deb ... 223s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ... 223s Selecting previously unselected package libgraphite2-3:arm64. 223s Preparing to unpack .../046-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 223s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 223s Selecting previously unselected package libharfbuzz0b:arm64. 223s Preparing to unpack .../047-libharfbuzz0b_10.2.0-1_arm64.deb ... 223s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 223s Selecting previously unselected package libsz2:arm64. 223s Preparing to unpack .../048-libsz2_1.1.3-1_arm64.deb ... 223s Unpacking libsz2:arm64 (1.1.3-1) ... 223s Selecting previously unselected package libhdf5-310:arm64. 223s Preparing to unpack .../049-libhdf5-310_1.14.5+repack-3_arm64.deb ... 223s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 223s Selecting previously unselected package libhdf5-hl-310:arm64. 223s Preparing to unpack .../050-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 223s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 223s Selecting previously unselected package libice6:arm64. 223s Preparing to unpack .../051-libice6_2%3a1.1.1-1_arm64.deb ... 223s Unpacking libice6:arm64 (2:1.1.1-1) ... 223s Selecting previously unselected package libimagequant0:arm64. 223s Preparing to unpack .../052-libimagequant0_2.18.0-1build1_arm64.deb ... 223s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 223s Selecting previously unselected package libwacom-common. 223s Preparing to unpack .../053-libwacom-common_2.14.0-1_all.deb ... 223s Unpacking libwacom-common (2.14.0-1) ... 223s Selecting previously unselected package libwacom9:arm64. 223s Preparing to unpack .../054-libwacom9_2.14.0-1_arm64.deb ... 223s Unpacking libwacom9:arm64 (2.14.0-1) ... 223s Selecting previously unselected package libinput-bin. 223s Preparing to unpack .../055-libinput-bin_1.27.1-1_arm64.deb ... 223s Unpacking libinput-bin (1.27.1-1) ... 223s Selecting previously unselected package libmtdev1t64:arm64. 223s Preparing to unpack .../056-libmtdev1t64_1.1.7-1_arm64.deb ... 223s Unpacking libmtdev1t64:arm64 (1.1.7-1) ... 223s Selecting previously unselected package libinput10:arm64. 223s Preparing to unpack .../057-libinput10_1.27.1-1_arm64.deb ... 223s Unpacking libinput10:arm64 (1.27.1-1) ... 223s Selecting previously unselected package libjpeg-turbo8:arm64. 223s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 223s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 223s Selecting previously unselected package libjpeg8:arm64. 223s Preparing to unpack .../059-libjpeg8_8c-2ubuntu11_arm64.deb ... 223s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 223s Selecting previously unselected package libjs-jquery. 223s Preparing to unpack .../060-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 223s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 223s Selecting previously unselected package libjs-jquery-ui. 223s Preparing to unpack .../061-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 223s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 223s Selecting previously unselected package liblapack3:arm64. 223s Preparing to unpack .../062-liblapack3_3.12.1-2_arm64.deb ... 223s Unpacking liblapack3:arm64 (3.12.1-2) ... 224s Selecting previously unselected package liblbfgsb0:arm64. 224s Preparing to unpack .../063-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 224s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 224s Selecting previously unselected package liblcms2-2:arm64. 224s Preparing to unpack .../064-liblcms2-2_2.16-2_arm64.deb ... 224s Unpacking liblcms2-2:arm64 (2.16-2) ... 224s Selecting previously unselected package liblerc4:arm64. 224s Preparing to unpack .../065-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 224s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 224s Selecting previously unselected package liblzf1:arm64. 224s Preparing to unpack .../066-liblzf1_3.6-4_arm64.deb ... 224s Unpacking liblzf1:arm64 (3.6-4) ... 224s Selecting previously unselected package libmd4c0:arm64. 224s Preparing to unpack .../067-libmd4c0_0.5.2-2_arm64.deb ... 224s Unpacking libmd4c0:arm64 (0.5.2-2) ... 224s Selecting previously unselected package libpcre2-16-0:arm64. 224s Preparing to unpack .../068-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 224s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 224s Selecting previously unselected package libqhull-r8.0:arm64. 224s Preparing to unpack .../069-libqhull-r8.0_2020.2-6build1_arm64.deb ... 224s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 224s Selecting previously unselected package libqt5core5t64:arm64. 224s Preparing to unpack .../070-libqt5core5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 224s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 224s Selecting previously unselected package libqt5dbus5t64:arm64. 224s Preparing to unpack .../071-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 224s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 224s Selecting previously unselected package libglvnd0:arm64. 224s Preparing to unpack .../072-libglvnd0_1.7.0-1build1_arm64.deb ... 224s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 224s Selecting previously unselected package libegl1:arm64. 224s Preparing to unpack .../073-libegl1_1.7.0-1build1_arm64.deb ... 224s Unpacking libegl1:arm64 (1.7.0-1build1) ... 224s Selecting previously unselected package libglx0:arm64. 224s Preparing to unpack .../074-libglx0_1.7.0-1build1_arm64.deb ... 224s Unpacking libglx0:arm64 (1.7.0-1build1) ... 224s Selecting previously unselected package libgl1:arm64. 224s Preparing to unpack .../075-libgl1_1.7.0-1build1_arm64.deb ... 224s Unpacking libgl1:arm64 (1.7.0-1build1) ... 224s Selecting previously unselected package libqt5network5t64:arm64. 224s Preparing to unpack .../076-libqt5network5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 224s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 224s Selecting previously unselected package libsm6:arm64. 224s Preparing to unpack .../077-libsm6_2%3a1.2.4-1_arm64.deb ... 224s Unpacking libsm6:arm64 (2:1.2.4-1) ... 224s Selecting previously unselected package libxcb-icccm4:arm64. 224s Preparing to unpack .../078-libxcb-icccm4_0.4.2-1_arm64.deb ... 224s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 224s Selecting previously unselected package libxcb-util1:arm64. 224s Preparing to unpack .../079-libxcb-util1_0.4.1-1_arm64.deb ... 224s Unpacking libxcb-util1:arm64 (0.4.1-1) ... 224s Selecting previously unselected package libxcb-image0:arm64. 224s Preparing to unpack .../080-libxcb-image0_0.4.0-2build1_arm64.deb ... 224s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 224s Selecting previously unselected package libxcb-keysyms1:arm64. 224s Preparing to unpack .../081-libxcb-keysyms1_0.4.1-1_arm64.deb ... 224s Unpacking libxcb-keysyms1:arm64 (0.4.1-1) ... 225s Selecting previously unselected package libxcb-render0:arm64. 225s Preparing to unpack .../082-libxcb-render0_1.17.0-2_arm64.deb ... 225s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 225s Selecting previously unselected package libxcb-render-util0:arm64. 225s Preparing to unpack .../083-libxcb-render-util0_0.3.10-1_arm64.deb ... 225s Unpacking libxcb-render-util0:arm64 (0.3.10-1) ... 225s Selecting previously unselected package libxcb-shape0:arm64. 225s Preparing to unpack .../084-libxcb-shape0_1.17.0-2_arm64.deb ... 225s Unpacking libxcb-shape0:arm64 (1.17.0-2) ... 225s Selecting previously unselected package libxcb-xinerama0:arm64. 225s Preparing to unpack .../085-libxcb-xinerama0_1.17.0-2_arm64.deb ... 225s Unpacking libxcb-xinerama0:arm64 (1.17.0-2) ... 225s Selecting previously unselected package libxcb-xinput0:arm64. 225s Preparing to unpack .../086-libxcb-xinput0_1.17.0-2_arm64.deb ... 225s Unpacking libxcb-xinput0:arm64 (1.17.0-2) ... 225s Selecting previously unselected package libxcb-xkb1:arm64. 225s Preparing to unpack .../087-libxcb-xkb1_1.17.0-2_arm64.deb ... 225s Unpacking libxcb-xkb1:arm64 (1.17.0-2) ... 225s Selecting previously unselected package libxkbcommon-x11-0:arm64. 225s Preparing to unpack .../088-libxkbcommon-x11-0_1.7.0-2_arm64.deb ... 225s Unpacking libxkbcommon-x11-0:arm64 (1.7.0-2) ... 225s Selecting previously unselected package libqt5gui5t64:arm64. 225s Preparing to unpack .../089-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libqt5widgets5t64:arm64. 225s Preparing to unpack .../090-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libqt5xml5t64:arm64. 225s Preparing to unpack .../091-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libqt5designer5:arm64. 225s Preparing to unpack .../092-libqt5designer5_5.15.15-6_arm64.deb ... 225s Unpacking libqt5designer5:arm64 (5.15.15-6) ... 225s Selecting previously unselected package libqt5sql5t64:arm64. 225s Preparing to unpack .../093-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libqt5help5:arm64. 225s Preparing to unpack .../094-libqt5help5_5.15.15-6_arm64.deb ... 225s Unpacking libqt5help5:arm64 (5.15.15-6) ... 225s Selecting previously unselected package libqt5printsupport5t64:arm64. 225s Preparing to unpack .../095-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libqt5test5t64:arm64. 225s Preparing to unpack .../096-libqt5test5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 225s Unpacking libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 225s Selecting previously unselected package libraqm0:arm64. 225s Preparing to unpack .../097-libraqm0_0.10.2-1_arm64.deb ... 225s Unpacking libraqm0:arm64 (0.10.2-1) ... 225s Selecting previously unselected package libsharpyuv0:arm64. 225s Preparing to unpack .../098-libsharpyuv0_1.5.0-0.1_arm64.deb ... 225s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 225s Selecting previously unselected package libjbig0:arm64. 226s Preparing to unpack .../099-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 226s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 226s Selecting previously unselected package libwebp7:arm64. 226s Preparing to unpack .../100-libwebp7_1.5.0-0.1_arm64.deb ... 226s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 226s Selecting previously unselected package libtiff6:arm64. 226s Preparing to unpack .../101-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 226s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 226s Selecting previously unselected package libwebpdemux2:arm64. 226s Preparing to unpack .../102-libwebpdemux2_1.5.0-0.1_arm64.deb ... 226s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 226s Selecting previously unselected package libwebpmux3:arm64. 226s Preparing to unpack .../103-libwebpmux3_1.5.0-0.1_arm64.deb ... 226s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 226s Selecting previously unselected package libxslt1.1:arm64. 226s Preparing to unpack .../104-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 226s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 226s Selecting previously unselected package python-matplotlib-data. 226s Preparing to unpack .../105-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 226s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 226s Selecting previously unselected package python3-all. 226s Preparing to unpack .../106-python3-all_3.13.1-1~exp2_arm64.deb ... 226s Unpacking python3-all (3.13.1-1~exp2) ... 226s Selecting previously unselected package python3-brotli. 226s Preparing to unpack .../107-python3-brotli_1.1.0-2build3_arm64.deb ... 226s Unpacking python3-brotli (1.1.0-2build3) ... 226s Selecting previously unselected package python3-numpy. 226s Preparing to unpack .../108-python3-numpy_1%3a1.26.4+ds-13_arm64.deb ... 226s Unpacking python3-numpy (1:1.26.4+ds-13) ... 226s Selecting previously unselected package python3-contourpy. 226s Preparing to unpack .../109-python3-contourpy_1.3.1-1_arm64.deb ... 226s Unpacking python3-contourpy (1.3.1-1) ... 226s Selecting previously unselected package python3-cycler. 226s Preparing to unpack .../110-python3-cycler_0.12.1-1_all.deb ... 226s Unpacking python3-cycler (0.12.1-1) ... 226s Selecting previously unselected package python3-dateutil. 226s Preparing to unpack .../111-python3-dateutil_2.9.0-3_all.deb ... 226s Unpacking python3-dateutil (2.9.0-3) ... 226s Selecting previously unselected package python3-decorator. 226s Preparing to unpack .../112-python3-decorator_5.1.1-5_all.deb ... 226s Unpacking python3-decorator (5.1.1-5) ... 226s Selecting previously unselected package python3-pytz. 226s Preparing to unpack .../113-python3-pytz_2025.1-3_all.deb ... 226s Unpacking python3-pytz (2025.1-3) ... 227s Selecting previously unselected package python3-tz. 227s Preparing to unpack .../114-python3-tz_2025.1-3_all.deb ... 227s Unpacking python3-tz (2025.1-3) ... 227s Selecting previously unselected package python3-platformdirs. 227s Preparing to unpack .../115-python3-platformdirs_4.3.6-1_all.deb ... 227s Unpacking python3-platformdirs (4.3.6-1) ... 227s Selecting previously unselected package python3-fs. 227s Preparing to unpack .../116-python3-fs_2.4.16-6_all.deb ... 227s Unpacking python3-fs (2.4.16-6) ... 227s Selecting previously unselected package python3-lxml:arm64. 227s Preparing to unpack .../117-python3-lxml_5.3.1-1_arm64.deb ... 227s Unpacking python3-lxml:arm64 (5.3.1-1) ... 227s Selecting previously unselected package python3-lz4. 227s Preparing to unpack .../118-python3-lz4_4.4.0+dfsg-1_arm64.deb ... 227s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 227s Selecting previously unselected package python3-scipy. 227s Preparing to unpack .../119-python3-scipy_1.14.1-4ubuntu1_arm64.deb ... 227s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 228s Selecting previously unselected package python3-mpmath. 228s Preparing to unpack .../120-python3-mpmath_1.3.0-1_all.deb ... 228s Unpacking python3-mpmath (1.3.0-1) ... 228s Selecting previously unselected package python3-sympy. 228s Preparing to unpack .../121-python3-sympy_1.13.3-1_all.deb ... 228s Unpacking python3-sympy (1.13.3-1) ... 228s Selecting previously unselected package python3-ufolib2. 228s Preparing to unpack .../122-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 228s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 228s Selecting previously unselected package unicode-data. 228s Preparing to unpack .../123-unicode-data_15.1.0-1_all.deb ... 228s Unpacking unicode-data (15.1.0-1) ... 228s Selecting previously unselected package python3-fonttools. 228s Preparing to unpack .../124-python3-fonttools_4.55.3-2_arm64.deb ... 228s Unpacking python3-fonttools (4.55.3-2) ... 228s Selecting previously unselected package python3-h5py-serial. 228s Preparing to unpack .../125-python3-h5py-serial_3.12.1-1_arm64.deb ... 228s Unpacking python3-h5py-serial (3.12.1-1) ... 229s Selecting previously unselected package python3-h5py. 229s Preparing to unpack .../126-python3-h5py_3.12.1-1_all.deb ... 229s Unpacking python3-h5py (3.12.1-1) ... 229s Selecting previously unselected package python3-kiwisolver. 229s Preparing to unpack .../127-python3-kiwisolver_1.4.7-3_arm64.deb ... 229s Unpacking python3-kiwisolver (1.4.7-3) ... 229s Selecting previously unselected package libopenjp2-7:arm64. 229s Preparing to unpack .../128-libopenjp2-7_2.5.0-2ubuntu3_arm64.deb ... 229s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu3) ... 229s Selecting previously unselected package python3-pil:arm64. 229s Preparing to unpack .../129-python3-pil_11.1.0-5_arm64.deb ... 229s Unpacking python3-pil:arm64 (11.1.0-5) ... 229s Selecting previously unselected package python3.12-tk. 229s Preparing to unpack .../130-python3.12-tk_3.12.9-1_arm64.deb ... 229s Unpacking python3.12-tk (3.12.9-1) ... 229s Selecting previously unselected package python3.13-tk. 229s Preparing to unpack .../131-python3.13-tk_3.13.2-1_arm64.deb ... 229s Unpacking python3.13-tk (3.13.2-1) ... 229s Selecting previously unselected package python3-tk:arm64. 229s Preparing to unpack .../132-python3-tk_3.13.1-1_arm64.deb ... 229s Unpacking python3-tk:arm64 (3.13.1-1) ... 229s Selecting previously unselected package python3-pil.imagetk:arm64. 229s Preparing to unpack .../133-python3-pil.imagetk_11.1.0-5_arm64.deb ... 229s Unpacking python3-pil.imagetk:arm64 (11.1.0-5) ... 229s Selecting previously unselected package python3-packaging. 229s Preparing to unpack .../134-python3-packaging_24.2-1_all.deb ... 229s Unpacking python3-packaging (24.2-1) ... 229s Selecting previously unselected package python3-matplotlib. 229s Preparing to unpack .../135-python3-matplotlib_3.8.3-3ubuntu2_arm64.deb ... 229s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 229s Selecting previously unselected package python3-pyqt5.sip. 229s Preparing to unpack .../136-python3-pyqt5.sip_12.17.0-1_arm64.deb ... 229s Unpacking python3-pyqt5.sip (12.17.0-1) ... 229s Selecting previously unselected package python3-pyqt5. 229s Preparing to unpack .../137-python3-pyqt5_5.15.11+dfsg-1build2_arm64.deb ... 229s Unpacking python3-pyqt5 (5.15.11+dfsg-1build2) ... 229s Selecting previously unselected package python3-fabio. 229s Preparing to unpack .../138-python3-fabio_2024.4.0-2build1_arm64.deb ... 229s Unpacking python3-fabio (2024.4.0-2build1) ... 230s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 230s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 230s Setting up liblcms2-2:arm64 (2.16-2) ... 230s Setting up python3.12-minimal (3.12.9-1) ... 231s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 231s Setting up libwayland-server0:arm64 (1.23.1-1) ... 231s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 231s Setting up libdouble-conversion3:arm64 (3.3.0-1build1) ... 231s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 231s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 231s Setting up libxcb-xinput0:arm64 (1.17.0-2) ... 231s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 231s Setting up python3-lz4 (4.4.0+dfsg-1) ... 231s Setting up libxcb-render0:arm64 (1.17.0-2) ... 231s Setting up libdrm-radeon1:arm64 (2.4.123-1) ... 231s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 231s Setting up fonts-lyx (2.4.3-1) ... 231s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 231s Setting up python3.12 (3.12.9-1) ... 232s Setting up libxcb-keysyms1:arm64 (0.4.1-1) ... 232s Setting up libxcb-shape0:arm64 (1.17.0-2) ... 232s Setting up x11-common (1:7.7+23ubuntu3) ... 233s Setting up libdeflate0:arm64 (1.23-1) ... 233s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 233s Setting up libxcb-render-util0:arm64 (0.3.10-1) ... 233s Setting up python3-all (3.13.1-1~exp2) ... 233s Setting up python3-pytz (2025.1-3) ... 233s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 233s Setting up libxcb-icccm4:arm64 (0.4.2-1) ... 233s Setting up libgomp1:arm64 (15-20250213-1ubuntu1) ... 233s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 233s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 233s Setting up libaec0:arm64 (1.1.3-1) ... 233s Setting up python3-platformdirs (4.3.6-1) ... 233s Setting up python3-tz (2025.1-3) ... 233s Setting up libxcb-util1:arm64 (0.4.1-1) ... 233s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 233s Setting up libxcb-xkb1:arm64 (1.17.0-2) ... 233s Setting up libxcb-image0:arm64 (0.4.0-2build1) ... 233s Setting up python3-fs (2.4.16-6) ... 234s Setting up libxcb-present0:arm64 (1.17.0-2) ... 234s Setting up unicode-data (15.1.0-1) ... 234s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 234s Setting up python3-decorator (5.1.1-5) ... 234s Setting up libblas3:arm64 (3.12.1-2) ... 234s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 234s Setting up python3-packaging (24.2-1) ... 234s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ... 234s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 234s Setting up python3-brotli (1.1.0-2build3) ... 234s Setting up libavahi-common-data:arm64 (0.8-14ubuntu1) ... 234s Setting up liblzf1:arm64 (3.6-4) ... 234s Setting up python3-cycler (0.12.1-1) ... 235s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 235s Setting up libxkbcommon-x11-0:arm64 (1.7.0-2) ... 235s Setting up fonts-dejavu-mono (2.37-8) ... 235s Setting up python3-kiwisolver (1.4.7-3) ... 235s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 235s Setting up fonts-dejavu-core (2.37-8) ... 235s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 235s Setting up libglapi-mesa:arm64 (24.3.4-3ubuntu1) ... 235s Setting up libgfortran5:arm64 (15-20250213-1ubuntu1) ... 235s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 235s Setting up libwebp7:arm64 (1.5.0-0.1) ... 235s Setting up python3-pyqt5.sip (12.17.0-1) ... 235s Setting up libmtdev1t64:arm64 (1.1.7-1) ... 235s Setting up libxshmfence1:arm64 (1.3-1build5) ... 235s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 235s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 235s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 235s Setting up libmd4c0:arm64 (0.5.2-2) ... 235s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu3) ... 235s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 235s Setting up python3-dateutil (2.9.0-3) ... 235s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 235s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 235s Setting up python3-mpmath (1.3.0-1) ... 236s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 236s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 236s Setting up libsz2:arm64 (1.1.3-1) ... 236s Setting up libwacom-common (2.14.0-1) ... 236s Setting up libwayland-client0:arm64 (1.23.1-1) ... 236s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 236s Setting up python3-sympy (1.13.3-1) ... 251s Setting up libice6:arm64 (2:1.1.1-1) ... 251s Setting up mesa-libgallium:arm64 (24.3.4-3ubuntu1) ... 251s Setting up liblapack3:arm64 (3.12.1-2) ... 251s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 251s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 251s Setting up libgbm1:arm64 (24.3.4-3ubuntu1) ... 251s Setting up libwacom9:arm64 (2.14.0-1) ... 251s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 251s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 251s Setting up libgl1-mesa-dri:arm64 (24.3.4-3ubuntu1) ... 251s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 251s Setting up libavahi-common3:arm64 (0.8-14ubuntu1) ... 251s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 251s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 251s Setting up libinput-bin (1.27.1-1) ... 251s Setting up libegl-mesa0:arm64 (24.3.4-3ubuntu1) ... 251s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 251s Setting up libraqm0:arm64 (0.10.2-1) ... 251s Setting up python3-numpy (1:1.26.4+ds-13) ... 255s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 255s Setting up python3-lxml:arm64 (5.3.1-1) ... 256s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 256s Setting up libegl1:arm64 (1.7.0-1build1) ... 256s Setting up python3-contourpy (1.3.1-1) ... 256s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 256s Setting up libsm6:arm64 (2:1.2.4-1) ... 256s Setting up libavahi-client3:arm64 (0.8-14ubuntu1) ... 256s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 256s Setting up libinput10:arm64 (1.27.1-1) ... 256s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 256s Setting up fontconfig (2.15.0-2ubuntu1) ... 258s Regenerating fonts cache... done. 258s Setting up libxft2:arm64 (2.3.6-1build1) ... 258s Setting up libglx-mesa0:arm64 (24.3.4-3ubuntu1) ... 258s Setting up python3-scipy (1.14.1-4ubuntu1) ... 266s Setting up libglx0:arm64 (1.7.0-1build1) ... 266s Setting up libtk8.6:arm64 (8.6.16-1) ... 266s Setting up python3.12-tk (3.12.9-1) ... 266s Setting up python3-h5py-serial (3.12.1-1) ... 266s Setting up python3.13-tk (3.13.2-1) ... 267s Setting up python3-pil:arm64 (11.1.0-5) ... 267s Setting up libgl1:arm64 (1.7.0-1build1) ... 267s Setting up python3-h5py (3.12.1-1) ... 268s Setting up libcups2t64:arm64 (2.4.11-0ubuntu2) ... 268s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 268s Setting up blt (2.5.3+dfsg-7build1) ... 268s Setting up python3-tk:arm64 (3.13.1-1) ... 268s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 268s Setting up python3-pil.imagetk:arm64 (11.1.0-5) ... 268s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 268s Setting up libqt5help5:arm64 (5.15.15-6) ... 268s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 268s Setting up libqt5designer5:arm64 (5.15.15-6) ... 268s Setting up python3-pyqt5 (5.15.11+dfsg-1build2) ... 268s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 268s Setting up python3-fonttools (4.55.3-2) ... 271s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 274s Setting up python3-fabio (2024.4.0-2build1) ... 275s Processing triggers for udev (257.2-3ubuntu1) ... 275s Processing triggers for libc-bin (2.40-4ubuntu1) ... 275s Processing triggers for systemd (257.2-3ubuntu1) ... 276s Processing triggers for man-db (2.13.0-1) ... 278s autopkgtest [12:37:13]: test command1: set -efu ; cp bootstrap.py pyproject.toml run_tests.py README.rst "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py run_tests.py -v -m --installed ; done 278s autopkgtest [12:37:13]: test command1: [----------------------- 278s Testing with python3.12: 279s WARNING:run_tests:Test fabio 2024.4.0 from /usr/lib/python3/dist-packages/fabio 279s test_iter_abort_iteration (fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration 279s testcopy (fabio.test.test_fabio_image.Test50000.testcopy) 279s test the copy statement ... ok 279s INFO:memProf:Time: 0.010s RAM: 6.144 Mb fabio.test.test_fabio_image.Test50000.testcopy 279s testgetmax (fabio.test.test_fabio_image.Test50000.testgetmax) 279s check max ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.652 Mb fabio.test.test_fabio_image.Test50000.testgetmax 279s testgetmean (fabio.test.test_fabio_image.Test50000.testgetmean) 279s check mean ... ok 279s INFO:memProf:Time: 0.005s RAM: 0.124 Mb fabio.test.test_fabio_image.Test50000.testgetmean 279s testgetmin (fabio.test.test_fabio_image.Test50000.testgetmin) 279s check min ... ok 279s INFO:memProf:Time: 0.004s RAM: 0.004 Mb fabio.test.test_fabio_image.Test50000.testgetmin 279s testgetstddev (fabio.test.test_fabio_image.Test50000.testgetstddev) 279s check stddev ... ok 279s INFO:memProf:Time: 0.010s RAM: 8.176 Mb fabio.test.test_fabio_image.Test50000.testgetstddev 279s testRebin (fabio.test.test_fabio_image.TestSlices.testRebin) 279s Test the rebin method ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testRebin 279s testgetmax (fabio.test.test_fabio_image.TestSlices.testgetmax) 279s check max ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmax 279s testgetmin (fabio.test.test_fabio_image.TestSlices.testgetmin) 279s check min ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmin 279s testintegratearea (fabio.test.test_fabio_image.TestSlices.testintegratearea) 279s check integrations ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testintegratearea 279s testFlat (fabio.test.test_fabio_image.TestOpen.testFlat) 279s no compression ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testFlat 279s test_badtype (fabio.test.test_fabio_image.TestOpen.test_badtype) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_badtype 279s test_pathlib (fabio.test.test_fabio_image.TestOpen.test_pathlib) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_pathlib 279s testbz2 (fabio.test.test_fabio_image.TestOpen.testbz2) 279s bzipped ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testbz2 279s testgz (fabio.test.test_fabio_image.TestOpen.testgz) 279s gzipped ... ok 279s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testgz 279s testpil (fabio.test.test_fabio_image.TestPilImage.testpil) ... WARNING:fabio.DEPRECATION:Function toPIL16 is deprecated since fabio version 0.9. Reason: Not maintained. Use 'fabio.utils.pilutils.create_pil_16' instead. 279s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 209, in testpil 279s pim = img.toPIL16() 279s ok 279s INFO:memProf:Time: 0.050s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage.testpil 279s testpil (fabio.test.test_fabio_image.TestPilImage2.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:232: RuntimeWarning: invalid value encountered in cast 279s return (numpy.random.random(shape) * sys.maxsize / 10).astype(typ) 279s 279s ok 279s INFO:memProf:Time: 0.057s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage2.testpil 279s testpil (fabio.test.test_fabio_image.TestPilImage3.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:240: RuntimeWarning: invalid value encountered in cast 279s return ((numpy.random.random(shape) - 0.5) * sys.maxsize / 10).astype(typ) 279s 279s ok 279s INFO:memProf:Time: 0.061s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage3.testpil 279s test_cleanup_pilimage_cache (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache) ... WARNING:fabio.DEPRECATION:Function pilimage is deprecated. Reason: Setting pilimage not supported. This attrbute is not cached anymore. 279s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 257, in test_cleanup_pilimage_cache 279s image.pilimage = None 279s ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache 279s test_patch_dim (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim) ... WARNING:fabio.DEPRECATION:Function dim2 is deprecated. Reason: dim2 should not be updated. 279s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 279s image.dim2, image.dim1 = data.shape 279s WARNING:fabio.DEPRECATION:Function dim1 is deprecated. Reason: dim1 should not be updated. 279s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 279s image.dim2, image.dim1 = data.shape 279s ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim 279s test_many_cases (fabio.test.test_filenames.TestFilenames.test_many_cases) 279s loop over CASES ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_many_cases 279s test_more_cases (fabio.test.test_filenames.TestFilenames.test_more_cases) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases 279s test_more_cases_jump (fabio.test.test_filenames.TestFilenames.test_more_cases_jump) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases_jump 279s test_FileNameObject_can_iterate (fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate) 279s Regression test for Fable ... ok 279s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate 279s test_files_are_being_opened (fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened) 279s Regression test for Fable ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened 279s testfirst (fabio.test.test_file_series.TestRandomSeries.testfirst) 279s check first ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testfirst 279s testjump (fabio.test.test_file_series.TestRandomSeries.testjump) 279s check jump ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testjump 279s testlast (fabio.test.test_file_series.TestRandomSeries.testlast) 279s check first ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testlast 279s testfirst (fabio.test.test_file_series.TestEdfNumbered.testfirst) 279s first in series ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testfirst 279s testlast (fabio.test.test_file_series.TestEdfNumbered.testlast) 279s last in series ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlast 279s testlen (fabio.test.test_file_series.TestEdfNumbered.testlen) 279s check len ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlen 279s testnext (fabio.test.test_file_series.TestEdfNumbered.testnext) 279s check all in order ... ok 279s INFO:memProf:Time: 0.015s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnext 279s testnextjump (fabio.test.test_file_series.TestEdfNumbered.testnextjump) 279s check current ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnextjump 279s testprevious (fabio.test.test_file_series.TestEdfNumbered.testprevious) 279s check all in order ... ok 279s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevious 279s testprevjump (fabio.test.test_file_series.TestEdfNumbered.testprevjump) 279s check current ... ok 279s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevjump 279s test_anyframe_frames (fabio.test.test_file_series.TestFileSeries.test_anyframe_frames) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_frames 279s test_anyframe_getframe (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe) ... ok 279s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe 279s test_anyframe_getframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes) ... ok 279s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes 279s test_anyframe_nframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes 279s test_anyframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles 279s test_filename_generator (fabio.test.test_file_series.TestFileSeries.test_filename_generator) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_generator 279s test_filename_iterator (fabio.test.test_file_series.TestFileSeries.test_filename_iterator) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_iterator 279s test_multiframe_frames (fabio.test.test_file_series.TestFileSeries.test_multiframe_frames) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_frames 279s test_multiframe_getframe (fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe 279s test_multiframe_nframes (fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes 279s test_multiframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles 279s test_singleframe_frames (fabio.test.test_file_series.TestFileSeries.test_singleframe_frames) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_frames 279s test_singleframe_getframe (fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe 279s test_singleframe_nframes (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes 279s test_singleframe_nframes2 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2 279s test_singleframe_nframes3 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3 279s test_singleframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles 279s test_with_filename_series (fabio.test.test_file_series.TestFileSeries.test_with_filename_series) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_filename_series 279s test_with_numbered_file_series (fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series) ... ok 279s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series 279s test_next1 (fabio.test.test_filename_steps.TestNext.test_next1) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestNext.test_next1 279s test_prev1 (fabio.test.test_filename_steps.TestPrev.test_prev1) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestPrev.test_prev1 279s test_jump1 (fabio.test.test_filename_steps.TestJump.test_jump1) ... ok 279s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestJump.test_jump1 279s testheader (fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 280s INFO:fabio.utils.ExternalResources:Image mb_LP_1_001.img.bz2 successfully downloaded. 284s ok 284s INFO:memProf:Time: 5.374s RAM: 50.136 Mb fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader 284s testcase (fabio.test.test_open_header.Test1.testcase) 284s check openheader can read edf headers ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675_header_only.edf.bz2') 285s INFO:fabio.utils.ExternalResources:Image F2K_Seb_Lyso0675_header_only.edf.bz2 successfully downloaded. 285s ok 285s INFO:memProf:Time: 0.156s RAM: 0.000 Mb fabio.test.test_open_header.Test1.testcase 285s testAdsc (fabio.test.test_open_image.TestOpenDtrek.testAdsc) 285s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 285s ok 285s INFO:memProf:Time: 0.095s RAM: 147.540 Mb fabio.test.test_open_image.TestOpenDtrek.testAdsc 285s testAdscBz2 (fabio.test.test_open_image.TestOpenDtrek.testAdscBz2) 285s openimage opening adsc bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 288s ok 288s INFO:memProf:Time: 3.829s RAM: 1.520 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscBz2 288s testAdscGz (fabio.test.test_open_image.TestOpenDtrek.testAdscGz) 288s openimage opening adsc gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.gz') 289s ok 289s INFO:memProf:Time: 0.267s RAM: 13.108 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscGz 289s testBruker (fabio.test.test_open_image.TestOpenBruker.testBruker) 289s openimage opening bruker ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 289s INFO:fabio.utils.ExternalResources:Image Cr8F8140k103.0026.bz2 successfully downloaded. 289s ok 289s INFO:memProf:Time: 0.526s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBruker 289s testBrukerBz2 (fabio.test.test_open_image.TestOpenBruker.testBrukerBz2) 289s openimage opening bruker bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 289s ok 289s INFO:memProf:Time: 0.063s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerBz2 289s testBrukerGz (fabio.test.test_open_image.TestOpenBruker.testBrukerGz) 289s openimage opening bruker gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.gz') 289s ok 289s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerGz 289s testEdf (fabio.test.test_open_image.TestOpenEdf.testEdf) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 290s INFO:fabio.utils.ExternalResources:Image F2K_Seb_Lyso0675.edf.bz2 successfully downloaded. 292s ok 292s INFO:memProf:Time: 2.356s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdf 292s testEdfBz2 (fabio.test.test_open_image.TestOpenEdf.testEdfBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 295s ok 295s INFO:memProf:Time: 3.628s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfBz2 295s testEdfGz (fabio.test.test_open_image.TestOpenEdf.testEdfGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.gz') 296s ok 296s INFO:memProf:Time: 0.223s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfGz 296s testMask (fabio.test.test_open_image.TestOpenMask.testMask) 296s openimage opening fit2d msk ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 296s INFO:fabio.utils.ExternalResources:Image face.msk.bz2 successfully downloaded. 296s ok 296s INFO:memProf:Time: 0.150s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMask 296s testMaskBz2 (fabio.test.test_open_image.TestOpenMask.testMaskBz2) 296s openimage opening fit2d msk bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 296s ok 296s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskBz2 296s testMaskGz (fabio.test.test_open_image.TestOpenMask.testMaskGz) 296s openimage opening fit2d msk gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.gz') 296s ok 296s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskGz 296s testMccd (fabio.test.test_open_image.TestOpenMccd.testMccd) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 296s INFO:fabio.utils.ExternalResources:Image somedata_0001.mccd.bz2 successfully downloaded. 297s ok 297s INFO:memProf:Time: 0.882s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccd 297s testMccdBz2 (fabio.test.test_open_image.TestOpenMccd.testMccdBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 297s ok 297s INFO:memProf:Time: 0.324s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdBz2 297s testMccdGz (fabio.test.test_open_image.TestOpenMccd.testMccdGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.gz') 297s ok 297s INFO:memProf:Time: 0.027s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdGz 297s testOxd (fabio.test.test_open_image.TestOpenOxd.testOxd) 297s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 297s INFO:fabio.utils.ExternalResources:Image b191_1_9_1.img.bz2 successfully downloaded. 297s ok 297s INFO:memProf:Time: 0.481s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxd 297s testOxdUnc (fabio.test.test_open_image.TestOpenOxd.testOxdUnc) 297s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 298s INFO:fabio.utils.ExternalResources:Image b191_1_9_1_uncompressed.img.bz2 successfully downloaded. 299s ok 299s INFO:memProf:Time: 1.748s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxdUnc 299s testComp (fabio.test.test_compression.TestByteOffset.testComp) ... ok 299s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testComp 299s testSC (fabio.test.test_compression.TestByteOffset.testSC) 299s test that datasets are unchanged after various compression/decompressions ... ok 299s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testSC 299s test_from_time (fabio.test.test_nexus.TestNexus.test_from_time) ... ok 299s INFO:memProf:Time: 0.017s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_from_time 299s test_nexus (fabio.test.test_nexus.TestNexus.test_nexus) 299s Test creation of Nexus files ... ok 299s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_nexus 299s testDefaultOption (fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -F=msk -o=output 300s INFO:fabio.test.test_fabio_convert:Return code: 0 300s ok 300s INFO:memProf:Time: 0.351s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption 300s testForceOption (fabio.test.test_fabio_convert.TestFabioConvert.testForceOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -f -F=msk -o=output 300s INFO:fabio.test.test_fabio_convert:Return code: 0 300s ok 300s INFO:memProf:Time: 0.330s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testForceOption 300s testFullFormatName (fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=numpyimage -o=output 300s INFO:fabio.test.test_fabio_convert:Return code: 0 300s ok 300s INFO:memProf:Time: 0.335s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName 300s testInteractiveOption (fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -i -F=msk -o=output 301s INFO:fabio.test.test_fabio_convert:Return code: 0 301s ok 301s INFO:memProf:Time: 0.336s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption 301s testNoClobberOption (fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -F=msk -o=output 301s INFO:fabio.test.test_fabio_convert:Return code: 0 301s ok 301s INFO:memProf:Time: 0.326s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption 301s testRemoveDestinationOption (fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --remove-destination -F=msk -o=output 301s INFO:fabio.test.test_fabio_convert:Return code: 0 301s ok 301s INFO:memProf:Time: 0.343s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption 301s testSingleFile (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -o=output/03.msk 302s INFO:fabio.test.test_fabio_convert:Return code: 0 302s ok 302s INFO:memProf:Time: 0.351s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile 302s testSingleFileToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -F=msk -o=output 302s INFO:fabio.test.test_fabio_convert:Return code: 0 302s ok 302s INFO:memProf:Time: 0.349s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir 302s testSingleFileWithWildcardToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=msk -o=output 302s INFO:fabio.test.test_fabio_convert:Return code: 0 302s ok 302s INFO:memProf:Time: 0.344s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir 302s testUpdateOption (fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --update -F=msk -o=output 303s INFO:fabio.test.test_fabio_convert:Return code: 0 303s ok 303s INFO:memProf:Time: 0.340s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption 303s test_missing_file (fabio.test.test_failing_files.TestFailingFiles.test_missing_file) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_missing_file 303s test_wrong_dm3 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3) ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3 303s test_wrong_edf (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf 303s test_wrong_edf2 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2) ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2 303s test_wrong_format (fabio.test.test_failing_files.TestFailingFiles.test_wrong_format) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_format 303s test_wrong_msk (fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk 303s test_wrong_numpy (fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy 303s test_annotation (fabio.test.test_formats.TestRegistration.test_annotation) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_annotation 303s test_deprecated_fabioimage_factory (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory) 303s Check that it is still working ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory 303s test_deprecated_fabioimage_factory_missing_format (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format) 303s Check that it is still working ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format 303s test_fabio_factory (fabio.test.test_formats.TestRegistration.test_fabio_factory) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory 303s test_fabio_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format 303s test_fabioformats_factory (fabio.test.test_formats.TestRegistration.test_fabioformats_factory) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory 303s test_fabioformats_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format 303s test_function (fabio.test.test_formats.TestRegistration.test_function) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_function 303s test_not_existing (fabio.test.test_formats.TestRegistration.test_not_existing) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_not_existing 303s test_edf_to_tiff (fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf') 303s INFO:fabio.utils.ExternalResources:Image face.edf.bz2 successfully downloaded. 303s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 303s ok 303s INFO:memProf:Time: 0.177s RAM: 0.000 Mb fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff 303s test_append (fabio.test.test_tiffio.TestTiffIO.test_append) ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_append 303s test_read (fabio.test.test_tiffio.TestTiffIO.test_read) ... INFO:fabio.test.test_tiffio:nRows = 100 303s INFO:fabio.test.test_tiffio:nColumns = 100 303s INFO:fabio.test.test_tiffio:nBits = 16 303s INFO:fabio.test.test_tiffio:compression = False 303s INFO:fabio.test.test_tiffio:compression_type = 1 303s INFO:fabio.test.test_tiffio:imageDescription = Title=1st 303s 303s INFO:fabio.test.test_tiffio:stripOffsets = [168] 303s INFO:fabio.test.test_tiffio:rowsPerStrip = 100 303s INFO:fabio.test.test_tiffio:stripByteCounts = [20000] 303s INFO:fabio.test.test_tiffio:software = PyMca.TiffIO 303s INFO:fabio.test.test_tiffio:date = Unknown Date 303s INFO:fabio.test.test_tiffio:sampleFormat = 1 303s INFO:fabio.test.test_tiffio:photometricInterpretation = 1 303s INFO:fabio.test.test_tiffio:info = {'Title': '1st'} 303s INFO:fabio.test.test_tiffio:data [0, 0:10] = [0 1 2 3 4 5 6 7 8 9] 303s ok 303s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_read 303s test_write (fabio.test.test_tiffio.TestTiffIO.test_write) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_write 303s test_single_frame_iterator (fabio.test.test_frames.TestFabioImage.test_single_frame_iterator) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestFabioImage.test_single_frame_iterator 303s test_content (fabio.test.test_frames.TestVirtualEdf.test_content) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_content 303s test_frames_abort_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration 303s test_frames_full_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration 303s test_frames_random_access (fabio.test.test_frames.TestVirtualEdf.test_frames_random_access) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_random_access 303s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s INFO:fabio.utils.ExternalResources:Image multiframes.edf.bz2 successfully downloaded. 303s test_content (fabio.test.test_frames.TestEdf.test_content) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_content 303s test_frames_abort_iteration (fabio.test.test_frames.TestEdf.test_frames_abort_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_abort_iteration 303s test_frames_full_iteration (fabio.test.test_frames.TestEdf.test_frames_full_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_full_iteration 303s test_frames_random_access (fabio.test.test_frames.TestEdf.test_frames_random_access) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_random_access 303s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 303s INFO:fabio.utils.ExternalResources:Image multiframes.tif.bz2 successfully downloaded. 303s test_content (fabio.test.test_frames.TestTiff.test_content) ... ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_content 303s test_frames_abort_iteration (fabio.test.test_frames.TestTiff.test_frames_abort_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_abort_iteration 303s test_frames_full_iteration (fabio.test.test_frames.TestTiff.test_frames_full_iteration) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_full_iteration 303s test_frames_random_access (fabio.test.test_frames.TestTiff.test_frames_random_access) ... ok 303s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_random_access 303s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 303s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s test_frames_abort_iteration (fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration) ... ok 303s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration 303s test_frames_full_iteration (fabio.test.test_frames.TestFileSeries.test_frames_full_iteration) ... ok 303s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_full_iteration 303s test_frames_random_access (fabio.test.test_frames.TestFileSeries.test_frames_random_access) ... ok 303s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_random_access 303s test_open (fabio.test.test_fabio.TestFabio.test_open) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open 303s test_open_bytesio (fabio.test.test_fabio.TestFabio.test_open_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_bytesio 303s test_open_fabio_bytesio (fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio 303s test_open_series (fabio.test.test_fabio.TestFabio.test_open_series) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series 303s test_open_series_first_filename (fabio.test.test_fabio.TestFabio.test_open_series_first_filename) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_first_filename 303s test_open_series_with (fabio.test.test_fabio.TestFabio.test_open_series_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_with 303s test_open_with (fabio.test.test_fabio.TestFabio.test_open_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_with 303s test_getstats (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats) 303s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats 303s test_headers (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers 303s test_read (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read) 303s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read 303s test_getstats (fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats) 303s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.063s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats 303s test_headers (fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers 303s test_read (fabio.test.codecs.test_edfimage.TestBzipEdf.test_read) 303s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_read 303s test_getstats (fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats) 303s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats 303s test_headers (fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers 303s test_read (fabio.test.codecs.test_edfimage.TestGzipEdf.test_read) 303s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/im0000.edf (frame 0) misses mandatory keys: HEADERID SIZE 303s ok 303s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_read 303s test_read (fabio.test.codecs.test_edfimage.TestEdfs.test_read) 303s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 303s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 304s INFO:fabio.utils.ExternalResources:Image id13_badPadding.edf.bz2 successfully downloaded. 305s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf Mean: exp=1504.29, obt=1504.291387796402 305s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf StdDev: exp=217.61, obt=217.60628547694915 307s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 Mean: exp=1504.29, obt=1504.291387796402 307s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 StdDev: exp=217.61, obt=217.60628547694915 307s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz Mean: exp=1504.29, obt=1504.291387796402 307s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz StdDev: exp=217.61, obt=217.60628547694915 307s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf Mean: exp=275.62, obt=275.6165885925293 307s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf StdDev: exp=583.44, obt=583.4356660155632 307s ok 307s INFO:memProf:Time: 3.567s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_read 307s test_rebin (fabio.test.codecs.test_edfimage.TestEdfs.test_rebin) 307s test the rebin of edfdata ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 307s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 307s ok 307s INFO:memProf:Time: 0.022s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_rebin 307s test_read (fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read) 307s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfGzip_U16.edf.bz2') 308s INFO:fabio.utils.ExternalResources:Image edfGzip_U16.edf.bz2 successfully downloaded. 308s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf.bz2') 309s INFO:fabio.utils.ExternalResources:Image edfCompressed_U16.edf.bz2 successfully downloaded. 309s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfUncompressed_U16.edf.bz2') 310s INFO:fabio.utils.ExternalResources:Image edfUncompressed_U16.edf.bz2 successfully downloaded. 313s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 313s INFO:fabio.edfimage:Data stream is padded : 8389062 > required 8388608 bytes 313s ok 313s INFO:memProf:Time: 6.360s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read 313s test_getFrame_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 314s INFO:fabio.utils.ExternalResources:Image MultiFrame.edf.bz2 successfully downloaded. 316s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 317s INFO:fabio.utils.ExternalResources:Image MultiFrame-Frame0.edf.bz2 successfully downloaded. 318s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 319s INFO:fabio.utils.ExternalResources:Image MultiFrame-Frame1.edf.bz2 successfully downloaded. 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 6.917s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono 320s test_getFrame_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi 320s test_next_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi 320s test_openimage_multiframes (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes) 320s test if openimage can directly read first or second frame of a multi-frame ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 0.015s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes 320s test_previous_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono 320s test_previous_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 320s ok 320s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi 320s test_fastread (fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 321s ok 321s INFO:memProf:Time: 0.751s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread 321s testBzip2 (fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2) ... ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2 321s testFlat (fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat) ... ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat 321s testGzip (fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip) ... ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip 321s test_bug_27 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27) 321s import fabio ... ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27 321s test_bug_459 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459) ... ok 321s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459 321s test_remove_metadata_header (fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 321s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 321s ok 321s INFO:memProf:Time: 0.022s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header 321s test_base (fabio.test.codecs.test_edfimage.TestBadFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 1) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_base 321s test_empty (fabio.test.codecs.test_edfimage.TestBadFiles.test_empty) ... ok 321s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_empty 321s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header 321s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 1) misses mandatory keys: HEADERID SIZE 321s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 321s ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data 321s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 1) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data 321s test_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header) ... ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header 321s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data 321s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data.edf (frame 0) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data 321s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic) ... ok 321s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic 321s test_base (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 1) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base 321s test_empty (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty) ... ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty 321s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header 321s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 1) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data 321s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 1) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data 321s test_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header) ... ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header 321s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data 321s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_40l1lzmr_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data.edf.gz (frame 0) misses mandatory keys: HEADERID SIZE 321s ok 321s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data 321s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic) ... ok 321s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic 321s test_multi_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame) 321s Test iterator on a multi-frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 322s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 322s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 323s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 323s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 323s ok 323s INFO:memProf:Time: 2.178s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame 323s test_single_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame) 323s Test iterator on a single frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf') 324s ok 324s INFO:memProf:Time: 0.625s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame 324s test_all_images (fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images) ... INFO:fabio.utils.ExternalResources:Image sphere2saxs_output.tar.bz2 successfully downloaded. 324s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 324s fd.extractall(output) 324s 324s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 324s INFO:fabio.edfimage:Data stream is padded : 80484 > required 80000 bytes 324s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 324s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 324s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 324s ok 324s INFO:memProf:Time: 0.605s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images 324s testNonAsciiHeader (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader) 324s Non-ascii characters are skipped. ... WARNING:fabio.edfimage:Non ASCII in key-value: Drop b'mykey' = b'\xc3\xa9yvalue' 324s ok 324s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader 324s testReadBadPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding) 324s Some old data were found with headers padded with 0xcd (issue #373) ... ok 324s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding 324s testReadGoodPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding) ... ok 324s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding 324s testReadZeroPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding) ... ok 324s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding 324s test_edf6_single_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz) 325s Test reading gzipped data files linking to an external binary data file. ... INFO:fabio.utils.ExternalResources:Image ehf_images2.tar.bz2 successfully downloaded. 325s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 325s fd.extractall(output) 325s 325s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 325s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 325s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 325s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 325s ok 325s INFO:memProf:Time: 0.884s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz 325s test_edfblocktypes (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes) 325s Test reading (gzipped) extended edf multi frame data files with and without a general block ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 325s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 325s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 325s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 325s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 326s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 326s ok 326s INFO:memProf:Time: 0.297s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes 326s test_edfmulti_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk) 326s Reading an uncompressed edf-multi-frame-file with references to data ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 326s fd.extractall(output) 326s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 326s ok 326s INFO:memProf:Time: 0.379s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk 326s test_edfmulti_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz) 326s Test reading the files of the test test_edfmulti_raw_bf_gblk after ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 326s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 326s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 326s ok 326s INFO:memProf:Time: 0.410s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz 326s test_edfmulti_raw_dark_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk) 327s Linking data of several frames to different parts of a single external ... INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 327s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 327s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 327s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 327s ok 327s INFO:memProf:Time: 0.241s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk 327s test_edfsingle_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk) 327s Reading an uncompressed edf-single-frame-file with references to data ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 327s ok 327s INFO:memProf:Time: 0.239s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk 327s test_edfsingle_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz) 327s Test reading gzipped data files linking to an external binary data file. ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 327s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 327s ok 327s INFO:memProf:Time: 0.243s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz 327s test_pitfalls (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls) 327s multi5+headerblob_edf1.edf.gz ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 327s ok 327s INFO:memProf:Time: 0.289s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls 327s test_special (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special) 328s 09_special/face_ok.edf.gz ... INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 328s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 328s ok 328s INFO:memProf:Time: 0.252s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special 328s test_bug_388 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 328s INFO:fabio.utils.ExternalResources:Image run2_1_00148.edf.bz2 successfully downloaded. 355s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 356s INFO:fabio.utils.ExternalResources:Image run2_1_00148.cbf.bz2 successfully downloaded. 357s ok 357s INFO:memProf:Time: 29.183s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388 357s test_bug_408 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408) 357s Bug when reading files generated by XDS ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 357s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 357s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XDS.cbf.bz2') 357s INFO:fabio.utils.ExternalResources:Image XDS.cbf.bz2 successfully downloaded. 358s ok 358s INFO:memProf:Time: 1.176s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408 358s test_bug_528 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528) 358s Bug when writing/reading small files ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 358s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 358s ok 358s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528 358s test_bug_535 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535) 358s Bug when reading files with long path in header ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 358s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 358s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref-test_5_0001.cbf') 359s INFO:fabio.utils.ExternalResources:Image ref-test_5_0001.cbf.bz2 successfully downloaded. 362s ok 362s INFO:memProf:Time: 4.007s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535 362s test_byte_offset (fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset) 362s check byte offset algorithm ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 362s INFO:fabio.test.codecs.test_cbfimage:Timing for Numpy method : 0.208s 362s INFO:fabio.test.codecs.test_cbfimage:Timing for Cython method : 0.011s, max delta= 0 362s ok 362s INFO:memProf:Time: 0.274s RAM: 5.152 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset 362s test_cif (fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 362s ok 362s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif 362s test_consitency_convert (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert) 362s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 362s ok 362s INFO:memProf:Time: 0.106s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert 362s test_consitency_manual (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual) 362s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 362s ok 362s INFO:memProf:Time: 0.112s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual 362s test_read (fabio.test.codecs.test_cbfimage.TestCbfReader.test_read) 362s check whole reader ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 362s INFO:fabio.test.codecs.test_cbfimage:Reading CBF took 0.029s whereas the same EDF took 0.000s 362s ok 362s INFO:memProf:Time: 0.058s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_read 362s test_unicode (fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode) 362s Test if an image can be read and saved to an unicode named ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 362s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 363s ok 363s INFO:memProf:Time: 0.107s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode 363s test_write (fabio.test.codecs.test_cbfimage.TestCbfReader.test_write) 363s Rest writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 363s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 363s ok 363s INFO:memProf:Time: 0.108s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_write 363s testsame (fabio.test.codecs.test_dtrekimage.TestMatch.testsame) 363s test ADSC image match to EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 363s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.edf.bz2') 364s INFO:fabio.utils.ExternalResources:Image mb_LP_1_001.edf.bz2 successfully downloaded. 400s ok 400s INFO:memProf:Time: 37.156s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestMatch.testsame 400s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 400s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('HSA_1_5mg_C1_0004.img.bz2') 400s INFO:fabio.utils.ExternalResources:Image HSA_1_5mg_C1_0004.img.bz2 successfully downloaded. 402s test_read (fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read) 404s check we can read flat ADSC images ... ok 404s INFO:memProf:Time: 2.040s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read 404s test_write_and_read (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read) ... WARNING:fabio.dtrekimage:Data type uint64 unsupported. Store it as uint32. 404s WARNING:fabio.dtrekimage:Data type int64 unsupported. Store it as int32. 404s WARNING:fabio.dtrekimage:Data type float16 unsupported. Store it as float32. 404s ok 404s INFO:memProf:Time: 0.030s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read 404s test_write_and_read_cube (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube) ... ok 404s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube 404s test_write_and_read_empty (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty) ... ok 404s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty 404s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch) 404s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 404s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 404s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 404s ok 404s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch 404s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch) 404s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 404s INFO:fabio.utils.ExternalResources:Image fit2d_click.msk.bz2 successfully downloaded. 404s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 404s INFO:fabio.utils.ExternalResources:Image fit2d_click.edf.bz2 successfully downloaded. 404s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/fit2d_click.edf (frame 0) misses mandatory keys: SIZE 404s ok 404s INFO:memProf:Time: 0.347s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch 404s test_read (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read) 404s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 404s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 404s ok 404s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read 404s testBzip2 (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2) ... ok 404s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2 404s testFlat (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat) ... ok 404s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat 404s testGzip (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip) ... ok 404s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip 404s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.spr.bz2') 405s INFO:fabio.utils.ExternalResources:Image example.spr.bz2 successfully downloaded. 406s test_read (fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read) 410s check we can read flat ADSC images ... ok 410s INFO:memProf:Time: 3.814s RAM: 0.000 Mb fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read 410s test_read (fabio.test.codecs.test_geimage.TestGE.test_read) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.bz2') 411s INFO:fabio.utils.ExternalResources:Image GE_aSI_detector_image_1529.bz2 successfully downloaded. 414s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.gz') 414s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529') 417s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_intact_header.ge') 418s INFO:fabio.utils.ExternalResources:Image GE_image_1frame_intact_header.ge.bz2 successfully downloaded. 420s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_blanked_header.ge') 421s INFO:fabio.utils.ExternalResources:Image GE_image_1frame_blanked_header.ge.bz2 successfully downloaded. 422s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('dark_before_000428.edf.ge5') 423s INFO:fabio.utils.ExternalResources:Image dark_before_000428.edf.ge5.bz2 successfully downloaded. 444s ok 444s INFO:memProf:Time: 34.117s RAM: 0.000 Mb fabio.test.codecs.test_geimage.TestGE.test_read 444s test_aux (fabio.test.codecs.test_mar345image.TestMar345.test_aux) 444s test auxillary functions ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 445s INFO:fabio.utils.ExternalResources:Image example.mar2300.bz2 successfully downloaded. 446s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 447s INFO:fabio.utils.ExternalResources:Image Fe3O4_023_101.mar2560.bz2 successfully downloaded. 447s ok 447s INFO:memProf:Time: 2.869s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_aux 447s test_byteswap_write (fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write) 447s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 447s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 452s ok 452s INFO:memProf:Time: 5.159s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write 452s test_memoryleak (fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak) 452s This test takes a lot of time, so only in debug mode. ... skipped 'very slow test' 452s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak 452s test_read (fabio.test.codecs.test_mar345image.TestMar345.test_read) 452s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 452s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 452s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300') 453s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 454s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.gz') 454s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560') 455s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 455s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.gz') 456s ok 456s INFO:memProf:Time: 3.105s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_read 456s test_write (fabio.test.codecs.test_mar345image.TestMar345.test_write) 456s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 456s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 461s ok 461s INFO:memProf:Time: 5.339s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_write 461s test_read (fabio.test.codecs.test_brukerimage.TestBruker.test_read) 461s see if we can read the test image ... ok 461s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBruker.test_read 461s test_read (fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read) 461s see if we can read the test image ... ok 461s INFO:memProf:Time: 0.034s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read 461s test_read (fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read) 461s see if we can read the test image ... ok 461s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read 461s test_read (fabio.test.codecs.test_brukerimage.TestRealImg.test_read) 461s check we can read bruker images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 461s ok 461s INFO:memProf:Time: 0.032s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_read 461s test_write (fabio.test.codecs.test_brukerimage.TestRealImg.test_write) 461s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 461s ok 461s INFO:memProf:Time: 0.163s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_write 461s test_linear (fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear) 461s test for self consistency of random data read/write ... WARNING:fabio.brukerimage:performing correction with slope=5.960444227069886e-08, offset=1.2274286e-06 (LINEAR=5.960444227069886e-08 1.2274286e-06) 461s ok 461s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear 461s test_conversion (fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 462s INFO:fabio.utils.ExternalResources:Image NaCl_10_01_0009.npy.bz2 successfully downloaded. 463s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 463s INFO:fabio.utils.ExternalResources:Image NaCl_10_01_0009.sfrm.bz2 successfully downloaded. 463s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testcbf.cbf.bz2') 464s INFO:fabio.utils.ExternalResources:Image testcbf.cbf.bz2 successfully downloaded. 464s ok 464s INFO:memProf:Time: 2.663s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion 464s test_read (fabio.test.codecs.test_bruker100image.TestBruker100.test_read) 464s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 464s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 464s ok 464s INFO:memProf:Time: 0.027s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_read 464s test_same (fabio.test.codecs.test_bruker100image.TestBruker100.test_same) 464s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 464s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 464s ok 464s INFO:memProf:Time: 0.132s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_same 464s test_split_merge (fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge) 464s Pretty challanging random example ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 464s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 464s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (65167,) overflow1 (100,) overflow2: (94,) 464s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (1587,) overflow1 (165,) overflow2: (95,) 464s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (0,) overflow1 (1622,) overflow2: (1552,) 464s ok 464s INFO:memProf:Time: 0.011s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge 464s test_write (fabio.test.codecs.test_bruker100image.TestBruker100.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 464s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 464s ok 464s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_write 464s test_read (fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read) 464s check we can read MarCCD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('corkcont2_H_0089.mccd.bz2') 465s INFO:fabio.utils.ExternalResources:Image corkcont2_H_0089.mccd.bz2 successfully downloaded. 467s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 468s ok 468s INFO:memProf:Time: 3.728s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read 468s test_read_openimage (fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage) ... ok 468s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage 468s test_read (fabio.test.codecs.test_oxdimage.TestOxd.test_read) 468s Test reading of compressed OXD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 468s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 468s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 468s INFO:fabio.utils.ExternalResources:Image 100nmfilmonglass_1_1.img.bz2 successfully downloaded. 468s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 469s INFO:fabio.utils.ExternalResources:Image pilatus300k.rod_img.bz2 successfully downloaded. 470s INFO:fabio.OXDimage:Compressed with the TY5 compression 470s INFO:fabio.OXDimage:TY5 decompression is slow for now 473s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 473s ok 473s INFO:memProf:Time: 5.745s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_read 473s test_write (fabio.test.codecs.test_oxdimage.TestOxd.test_write) 473s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 473s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 473s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 473s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 473s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 473s INFO:fabio.OXDimage:Compressed with the TY5 compression 474s INFO:fabio.OXDimage:TY5 decompression is slow for now 477s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 477s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 477s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 477s ok 477s INFO:memProf:Time: 3.210s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_write 477s test_same (fabio.test.codecs.test_oxdimage.TestOxdSame.test_same) 477s test if images are actually the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 477s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 477s ok 477s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdSame.test_same 477s test_same (fabio.test.codecs.test_oxdimage.TestOxdBig.test_same) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.img.bz2') 477s INFO:fabio.utils.ExternalResources:Image d80_60s.img.bz2 successfully downloaded. 483s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.edf.bz2') 484s INFO:fabio.utils.ExternalResources:Image d80_60s.edf.bz2 successfully downloaded. 489s WARNING:fabio.edfimage:Unknown compression scheme TY1 489s ok 489s INFO:memProf:Time: 12.363s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdBig.test_same 489s test_convert (fabio.test.codecs.test_oxdimage.TestConvert.test_convert) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 489s WARNING:fabio.OXDimage:Enforce TY1 compression 489s ok 489s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestConvert.test_convert 489s test_read (fabio.test.codecs.test_kcdimage.TestKcd.test_read) 489s check we can read kcd images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 490s INFO:fabio.utils.ExternalResources:Image i01f0001.kcd.bz2 successfully downloaded. 491s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 491s INFO:fabio.utils.ExternalResources:Image i01f0001.edf.bz2 successfully downloaded. 495s ok 495s INFO:memProf:Time: 5.703s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_read 495s test_same (fabio.test.codecs.test_kcdimage.TestKcd.test_same) 495s see if we can read kcd images and if they are the same as the EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 495s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 495s ok 495s INFO:memProf:Time: 0.401s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_same 495s test_bug502 (fabio.test.codecs.test_tifimage.TestTif.test_bug502) 495s Test the reading of a frame with wrong Photometric interpretation ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.npy') 496s INFO:fabio.utils.ExternalResources:Image frame_00017.npy.bz2 successfully downloaded. 506s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.tif') 507s INFO:fabio.utils.ExternalResources:Image frame_00017.tif.bz2 successfully downloaded. 518s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 518s ok 518s INFO:memProf:Time: 22.774s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_bug502 518s test_frame (fabio.test.codecs.test_tifimage.TestTif.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 519s INFO:fabio.utils.ExternalResources:Image Feb09-bright-00.300s_WAXS.bz2 successfully downloaded. 519s WARNING:fabio.TiffIO:Bogus StripByteCounts information 519s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 519s WARNING:fabio.TiffIO:Bogus StripByteCounts information 519s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s ok 520s INFO:memProf:Time: 1.597s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_frame 520s test_header (fabio.test.codecs.test_tifimage.TestTif.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s ok 520s INFO:memProf:Time: 0.246s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_header 520s test_read (fabio.test.codecs.test_tifimage.TestTif.test_read) 520s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 520s WARNING:fabio.TiffIO:Bogus StripByteCounts information 520s ok 520s INFO:memProf:Time: 0.265s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_read 520s test1 (fabio.test.codecs.test_tifimage.TestGzipTif.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 520s INFO:fabio.utils.ExternalResources:Image oPPA_5grains_0001.tif.bz2 successfully downloaded. 521s ok 521s INFO:memProf:Time: 0.658s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestGzipTif.test1 521s test1 (fabio.test.codecs.test_tifimage.TestTif_Rect.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testmap1_0002.tif.bz2') 521s INFO:fabio.utils.ExternalResources:Image testmap1_0002.tif.bz2 successfully downloaded. 521s ok 521s INFO:memProf:Time: 0.155s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Rect.test1 521s test1 (fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1) 521s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.tif.bz2') 521s INFO:fabio.utils.ExternalResources:Image a0009.tif.bz2 successfully downloaded. 522s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.edf.bz2') 522s INFO:fabio.utils.ExternalResources:Image a0009.edf.bz2 successfully downloaded. 523s WARNING:fabio.TiffIO:Non standard TIFF. Rows per strip TAG missing 523s WARNING:fabio.TiffIO:Non standard TIFF. Strip byte counts TAG missing 523s ok 523s INFO:memProf:Time: 2.088s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1 523s test1 (fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1) 523s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 523s INFO:fabio.utils.ExternalResources:Image fit2d.tif.bz2 successfully downloaded. 523s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.edf.bz2') 523s INFO:fabio.utils.ExternalResources:Image fit2d.edf.bz2 successfully downloaded. 523s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 523s WARNING:fabio.edfimage:Unknown compression scheme FALSE 523s ok 523s INFO:memProf:Time: 0.297s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1 523s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1) 523s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 523s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.edf.bz2') 523s INFO:fabio.utils.ExternalResources:Image oPPA_5grains_0001.edf.bz2 successfully downloaded. 524s ok 524s INFO:memProf:Time: 0.871s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1 524s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1) 524s Testing pilatus tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.tif.bz2') 525s INFO:fabio.utils.ExternalResources:Image pilatus2M.tif.bz2 successfully downloaded. 535s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.edf.bz2') 536s INFO:fabio.utils.ExternalResources:Image pilatus2M.edf.bz2 successfully downloaded. 547s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 549s ok 549s INFO:memProf:Time: 24.849s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1 549s test_pil (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 549s INFO:fabio.utils.ExternalResources:Image indexed_color.tif.bz2 successfully downloaded. 549s ok 549s INFO:memProf:Time: 0.224s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil 549s test_tiffio (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 549s WARNING:fabio.tifimage:Third dimension is the color 549s WARNING:fabio.tifimage:Third dimension is the color 549s WARNING:fabio.tifimage:Third dimension is the color 549s ok 549s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio 550s test_all_images (fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images) ... INFO:fabio.utils.ExternalResources:Image libtiffpic.tar.gz successfully downloaded. 550s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 550s fd.extractall(output) 550s 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif: no tiff reader managed to read the file. 550s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with TiffIO due to could not broadcast input array from shape (10,640,3) into shape (15,640,3), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with PIL: image file is truncated (1280 bytes not processed) 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif: no tiff reader managed to read the file. 550s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif: no tiff reader managed to read the file. 550s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/zackthecat.tif with TiffIO due to 273 is not in list, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-08.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ycbcr-cat.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with TiffIO due to Unsupported number of bits for unsigned int: 6, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/fax2d.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with TiffIO due to Unsupported number of bits for unsigned int: 10, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-16.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/strike.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with TiffIO due to Unsupported number of bits for unsigned int: 12, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with TiffIO due to cannot reshape array of size 65536 into shape (800), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with PIL: image file is truncated (126 bytes not processed) 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/text.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s ThunderDecode: Not enough data at scanline 320 (0 != 1512). 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/smallliz.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/g3test.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with TiffIO due to Unsupported number of bits for unsigned int: 14, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/oxford.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-tile.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-lzw.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif: no tiff reader managed to read the file. 550s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/jim___ah.tif with TiffIO due to Unsupported number of bits for unsigned int: 1, trying PIL 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Third dimension is the color 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with TiffIO due to Unsupported number of bits for unsigned int: 24, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif: no tiff reader managed to read the file. 550s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ladoga.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-jpeg.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with TiffIO due to cannot reshape array of size 2044 into shape (73,3), trying PIL 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif' mode='rb' closefd=True> 550s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif: no tiff reader managed to read the file. 550s WARNING:fabio.tifimage:Third dimension is the color 550s ok 550s INFO:memProf:Time: 0.963s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images 550s test_invert (fabio.test.codecs.test_xsdimage.TestXSD.test_invert) 550s Tests that 2 matrixes are invert ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 551s INFO:fabio.utils.ExternalResources:Image XSDataImage.edf.bz2 successfully downloaded. 551s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 552s INFO:fabio.utils.ExternalResources:Image XSDataImage.xml.bz2 successfully downloaded. 553s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 553s INFO:fabio.utils.ExternalResources:Image XSDataImageInv.xml.bz2 successfully downloaded. 554s ok 554s INFO:memProf:Time: 3.388s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_invert 554s test_read (fabio.test.codecs.test_xsdimage.TestXSD.test_read) 554s Test reading of XSD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 554s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 554s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 554s INFO:fabio.test.codecs.test_xsdimage:XSDataImage.xml 667.15 667.1489268499176 554s INFO:fabio.test.codecs.test_xsdimage:XSDataImageInv.xml 0.01 0.010599090552568758 554s ok 554s INFO:memProf:Time: 0.017s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_read 554s test_same (fabio.test.codecs.test_xsdimage.TestXSD.test_same) 554s test if an image is the same as the EDF equivalent ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 554s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 554s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 554s ok 554s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_same 554s test_memoryleak (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak) 554s This test takes a lot of time, so only in debug mode. ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 554s INFO:fabio.utils.ExternalResources:Image mgzn-20hpt.img.bz2 successfully downloaded. 555s ok 555s INFO:memProf:Time: 1.628s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak 555s test_read (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read) 555s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 557s ok 557s INFO:memProf:Time: 1.380s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read 557s test_read (fabio.test.codecs.test_pnmimage.TestPNM.test_read) 557s check we can read pnm images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 557s INFO:fabio.utils.ExternalResources:Image image0001.pgm.bz2 successfully downloaded. 557s ok 557s INFO:memProf:Time: 0.178s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_read 557s test_write (fabio.test.codecs.test_pnmimage.TestPNM.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 557s ok 557s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_write 557s test_multidim (fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim) ... ok 557s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim 557s test_read (fabio.test.codecs.test_numpyimage.TestNumpy.test_read) 557s check we can read pnm images ... ok 557s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_read 557s test_write (fabio.test.codecs.test_numpyimage.TestNumpy.test_write) 557s check we can write numpy images ... ok 557s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_write 557s test_frame (fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 557s INFO:fabio.utils.ExternalResources:Image lysb_5mg-1.90s_SAXS.bz2 successfully downloaded. 559s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 559s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 560s ok 560s INFO:memProf:Time: 3.078s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame 560s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 560s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 560s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 560s ok 560s INFO:memProf:Time: 0.089s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_header 560s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus.test_read) 560s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 560s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 560s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 560s ok 560s INFO:memProf:Time: 0.096s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_read 560s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 561s INFO:fabio.utils.ExternalResources:Image Pilatus1M.tif.bz2 successfully downloaded. 561s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 561s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 561s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 561s ok 561s INFO:memProf:Time: 1.190s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header 561s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read) 561s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 561s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 561s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 561s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 561s ok 561s INFO:memProf:Time: 0.155s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read 561s test_bug_479 (fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 561s ok 561s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479 561s test_frames_abort_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration) ... ok 561s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration 561s test_frames_full_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration) ... ok 561s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration 561s test_frames_random_access (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access) ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access 561s test_open (fabio.test.codecs.test_eigerimage.TestEiger.test_open) 561s check we can read images from Eiger ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_open 561s test_read (fabio.test.codecs.test_eigerimage.TestEiger.test_read) 561s check we can read images from Eiger ... ok 561s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_read 561s test_write (fabio.test.codecs.test_eigerimage.TestEiger.test_write) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 561s ok 561s INFO:memProf:Time: 0.015s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_write 561s test_iterate (fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate) ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate 561s test_next_frames (fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames) 561s check the legacy next API ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames 561s test_open (fabio.test.codecs.test_hdf5image.TestHdf5.test_open) 561s check we can read images from Eiger ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_open 561s test_read (fabio.test.codecs.test_hdf5image.TestHdf5.test_read) 561s check we can read images from Eiger ... ok 561s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_read 561s test_mask (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 562s INFO:fabio.utils.ExternalResources:Image fit2d.f2d.bz2 successfully downloaded. 562s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 562s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.f2d.bz2') 562s INFO:fabio.utils.ExternalResources:Image Pilatus1M.f2d.bz2 successfully downloaded. 566s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf.bz2') 567s INFO:fabio.utils.ExternalResources:Image Pilatus1M.cbf.bz2 successfully downloaded. 567s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.msk.bz2') 567s INFO:fabio.utils.ExternalResources:Image Pilatus1M.msk.bz2 successfully downloaded. 567s ok 567s INFO:memProf:Time: 5.814s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask 567s test_match (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match) 567s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 567s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 567s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 567s ok 567s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match 567s test_read (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read) 567s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 567s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 567s ok 567s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read 567s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2.SPE.bz2') 568s INFO:fabio.utils.ExternalResources:Image v2.SPE.bz2 successfully downloaded. 568s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2_converted.SPE.bz2') 569s INFO:fabio.utils.ExternalResources:Image v2_converted.SPE.bz2 successfully downloaded. 569s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3.spe.bz2') 569s INFO:fabio.utils.ExternalResources:Image v3.spe.bz2 successfully downloaded. 569s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_custom_roi.spe.bz2') 569s INFO:fabio.utils.ExternalResources:Image v3_custom_roi.spe.bz2 successfully downloaded. 569s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_2frames.spe.bz2') 570s INFO:fabio.utils.ExternalResources:Image v3_2frames.spe.bz2 successfully downloaded. 574s test_calibration (fabio.test.codecs.test_speimage.TestSpeImage.test_calibration) ... ok 574s INFO:memProf:Time: 0.027s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_calibration 574s test_center_wavelength (fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength) ... ok 574s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength 574s test_detector (fabio.test.codecs.test_speimage.TestSpeImage.test_detector) ... ok 574s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_detector 574s test_exposure_time (fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time) ... ok 574s INFO:memProf:Time: 0.046s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time 574s test_fabio_integration (fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration) ... ok 574s INFO:memProf:Time: 0.157s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration 574s test_grating (fabio.test.codecs.test_speimage.TestSpeImage.test_grating) ... ok 574s INFO:memProf:Time: 0.015s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_grating 574s test_multiple_frames (fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames) ... ok 574s INFO:memProf:Time: 0.033s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames 574s test_read_data (fabio.test.codecs.test_speimage.TestSpeImage.test_read_data) ... ok 574s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_read_data 574s test_reading_version2_spe (fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe) ... ok 574s INFO:memProf:Time: 0.016s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe 574s test_roi (fabio.test.codecs.test_speimage.TestSpeImage.test_roi) ... ok 574s INFO:memProf:Time: 0.023s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_roi 574s test_time (fabio.test.codecs.test_speimage.TestSpeImage.test_time) ... ok 574s INFO:memProf:Time: 0.017s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_time 574s test_read_empty_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file) ... ok 574s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file 574s test_read_failing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 574s INFO:fabio.utils.ExternalResources:Image rand_uint8.jpg.bz2 successfully downloaded. 574s ok 574s INFO:memProf:Time: 0.145s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file 574s test_read_missing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file) ... ok 574s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file 574s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 574s ok 574s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8 574s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 574s ok 574s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8 574s test_with_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 574s ok 574s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil 574s test_without_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 574s ok 574s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil 574s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file) ... ok 574s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file 574s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 575s INFO:fabio.utils.ExternalResources:Image binned_data_uint16.jp2.bz2 successfully downloaded. 575s ok 575s INFO:memProf:Time: 0.274s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16 575s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 575s INFO:fabio.utils.ExternalResources:Image binned_data_uint8.jp2.bz2 successfully downloaded. 575s ok 575s INFO:memProf:Time: 0.221s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8 575s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 575s ok 575s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format 575s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file) ... ok 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file 575s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 575s ok 575s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16 575s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 575s ok 575s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8 575s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 575s ok 575s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format 575s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file) ... skipped 'glymur is not available or too old' 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file 575s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16) ... skipped 'glymur is not available or too old' 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16 575s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8) ... skipped 'glymur is not available or too old' 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8 575s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format) ... skipped 'glymur is not available or too old' 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format 575s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file) ... ok 575s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file 575s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 575s ok 575s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16 575s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 575s ok 575s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8 575s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format) ... /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 575s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 575s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.bz2 rb 575s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.bz2 rb 575s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 575s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/fit2d.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/pilatus2M.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 575s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 575s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 575s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 575s 0 575s 1 575s 2 575s 3 575s 4 575s 5 575s 6 575s 7 575s 8 575s 9 575s 10 575s 11 575s 12 575s 13 575s 14 575s 15 575s 16 575s 17 575s 18 575s 19 575s 20 575s 21 575s 22 575s 23 575s 24 575s 25 575s 26 575s 27 575s 28 575s 29 575s 30 575s 31 575s 32 575s 33 575s 34 575s 35 575s 36 575s 37 575s 38 575s 39 575s 40 575s 41 575s 42 575s 43 575s 44 575s 45 575s 46 575s 47 575s 48 575s 49 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: 575s jpeg2kimage.PIL: INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 575s ok 575s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format 575s test_read (fabio.test.codecs.test_mpaimage.TestMpa.test_read) 575s Test the reading of multiwire images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mpa_test.mpa.bz2') 575s INFO:fabio.utils.ExternalResources:Image mpa_test.mpa.bz2 successfully downloaded. 580s ok 580s INFO:memProf:Time: 4.686s RAM: 0.000 Mb fabio.test.codecs.test_mpaimage.TestMpa.test_read 580s test_read (fabio.test.codecs.test_dm3image.TestDm3Image.test_read) 580s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref_d20x_310mm.dm3.bz2') 581s INFO:fabio.utils.ExternalResources:Image ref_d20x_310mm.dm3.bz2 successfully downloaded. 588s ok 588s INFO:memProf:Time: 8.435s RAM: 0.000 Mb fabio.test.codecs.test_dm3image.TestDm3Image.test_read 588s test_read (fabio.test.codecs.test_mrcimage.TestMrc.test_read) 588s check we can read mrc images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 589s INFO:fabio.utils.ExternalResources:Image EMD-3001.map.bz2 successfully downloaded. 589s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 589s INFO:fabio.utils.ExternalResources:Image 0p67_5s_0000.mrc.bz2 successfully downloaded. 613s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 614s INFO:fabio.utils.ExternalResources:Image EMD-3001.npy.bz2 successfully downloaded. 614s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 615s INFO:fabio.utils.ExternalResources:Image 0p67_5s_0000.npy.bz2 successfully downloaded. 640s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got ok 640s INFO:memProf:Time: 52.225s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_read 640s test_same (fabio.test.codecs.test_mrcimage.TestMrc.test_same) 640s see if we can read mrc images and if they are the same as the numpy dump ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 640s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 640s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 640s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 640s INFO:fabio.test.codecs.test_mrcimage:Comparing files EMD-3001.map and EMD-3001.npy 640s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.test.codecs.test_mrcimage:Comparing files 0p67_5s_0000.mrc and 0p67_5s_0000.npy 640s ok 640s INFO:memProf:Time: 0.023s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_same 640s test_file_series (fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series) ... ok 640s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series 640s test_frames_abort_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration) ... ok 640s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration 640s test_frames_full_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration) ... ok 640s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration 640s test_frames_random_access (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access) ... ok 640s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access 640s test_multi_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame) ... ok 640s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame 640s test_single_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame) ... ok 640s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame 640s test_data (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data) ... INFO:fabio.esperantoimage:Esperanto accepts only integer data, rounding 640s INFO:fabio.esperantoimage:Padding image to be square, multiple of 4 and of size between 256 and 4096 640s ok 640s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data 640s test_header (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 641s INFO:fabio.utils.ExternalResources:Image sucrose_1s__1_1.esperanto.bz2 successfully downloaded. 643s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_40l1lzmr_ubuntu/4bytes_long.esperanto 643s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_40l1lzmr_ubuntu/agi_bitfield.esperanto 645s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 645s INFO:fabio.utils.ExternalResources:Image reference.esperanto.bz2 successfully downloaded. 645s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_40l1lzmr_ubuntu/4bytes_long.esperanto 645s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_40l1lzmr_ubuntu/agi_bitfield.esperanto 645s ok 645s INFO:memProf:Time: 4.732s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header 645s test_read (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read) 645s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 647s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 647s ok 647s INFO:memProf:Time: 1.764s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read 647s test_values (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 647s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.npy.bz2') 647s INFO:fabio.utils.ExternalResources:Image reference.npy.bz2 successfully downloaded. 647s ok 647s INFO:memProf:Time: 0.584s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values 647s test_frames_abort_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration) ... ok 647s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration 647s test_frames_full_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration) ... ok 647s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration 647s test_frames_random_access (fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access) ... ok 648s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access 648s test_identify (fabio.test.codecs.test_limaimage.TestLima.test_identify) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('output_sparse_0_00000.h5') 648s INFO:fabio.utils.ExternalResources:Image output_sparse_0_00000.h5.bz2 successfully downloaded. 651s ok 651s INFO:memProf:Time: 3.359s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_identify 651s test_open (fabio.test.codecs.test_limaimage.TestLima.test_open) 651s test_open check we can read images from Lima ... ok 651s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_open 651s test_read (fabio.test.codecs.test_limaimage.TestLima.test_read) 651s test_read check we can read images from Lima ... ok 651s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_read 651s test_write (fabio.test.codecs.test_limaimage.TestLima.test_write) ... WARNING:fabio.limaimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 651s ok 651s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_write 651s test_read (fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read) 651s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Radiograph_SP8_BL47XU_HiPicimage.img.bz2') 652s INFO:fabio.utils.ExternalResources:Image Radiograph_SP8_BL47XU_HiPicimage.img.bz2 successfully downloaded. 655s ok 655s INFO:memProf:Time: 4.210s RAM: 0.000 Mb fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read 655s test_read (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read) 655s check we can read images from Eiger ... ok 655s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read 655s test_write (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write) ... ok 655s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write 655s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0001.ccd') 655s INFO:fabio.utils.ExternalResources:Image scan0001.ccd.bz2 successfully downloaded. 655s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0005.ccd') 655s INFO:fabio.utils.ExternalResources:Image scan0005.ccd.bz2 successfully downloaded. 655s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0050.ccd') 656s INFO:fabio.utils.ExternalResources:Image scan0050.ccd.bz2 successfully downloaded. 656s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0059.ccd') 656s INFO:fabio.utils.ExternalResources:Image scan0059.ccd.bz2 successfully downloaded. 656s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0066.ccd') 656s INFO:fabio.utils.ExternalResources:Image scan0066.ccd.bz2 successfully downloaded. 656s test_parse (fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse) ... ok 656s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse 656s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf') 656s test_decomposition (fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition) ... WARNING:fabio.test.codecs.test_xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 656s WARNING:fabio.xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 656s ok 656s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition 656s test_compress_decode_field_overflow (fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow) ... ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow 656s test_compress_decompress_field_small (fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small) ... ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small 656s test_full_compress_decompress_field (fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field) ... ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field 656s test_get_fieldsize (fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize) ... ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize 656s test_mask_conv (fabio.test.test_agi_bitfield.TestUtil.test_mask_conv) ... ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_mask_conv 656s test_compress_row_small (fabio.test.test_agi_bitfield.TestRow.test_compress_row_small) ... ok 656s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_small 656s test_compress_row_zero (fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero) ... ok 656s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero 656s test_full_rand (fabio.test.test_agi_bitfield.TestCompression.test_full_rand) ... ok 656s INFO:memProf:Time: 0.075s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestCompression.test_full_rand 656s test_cython (fabio.test.test_densification.TestDensification.test_cython) ... ok 656s INFO:memProf:Time: 0.092s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_cython 656s test_rng_normal (fabio.test.test_densification.TestDensification.test_rng_normal) ... ok 656s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_normal 656s test_rng_uniform (fabio.test.test_densification.TestDensification.test_rng_uniform) ... ok 656s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_uniform 656s setUpClass (fabio.test.test_io_limits.TestEdf) ... skipped 'test requires debug level logging' 656s setUpClass (fabio.test.test_io_limits.TestTiff) ... skipped 'test requires debug level logging' 656s test_coverage (fabio.test.test_utils_cli.TestUtilShell.test_coverage) 656s test function coverage ... 656s /tmp/fabio_40l1lzmr_ubuntu/lima3d.h5 656s /tmp/fabio_40l1lzmr_ubuntu/binary.npy 656s speed-up: 25.76905401298155 656s ##### 0 656s ##### 1 656s ##### 2 656s ##### 3 656s ##### 4 656s ##### 5 656s ##### 6 656s ##### 7 656s aaa [ ] 7% toto aaa [■■■■■■ ] 70% toto aaa [■■■■■■■■■■] 132% toto ok 656s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_coverage 656s test_expand_args (fabio.test.test_utils_cli.TestUtilShell.test_expand_args) ... ok 656s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_expand_args 656s 656s ---------------------------------------------------------------------- 656s Ran 356 tests in 377.493s 656s 656s OK (skipped=7) 656s Testing with python3.13: 657s WARNING:run_tests:Test fabio 2024.4.0 from /usr/lib/python3/dist-packages/fabio 657s test_iter_abort_iteration (fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration 657s testcopy (fabio.test.test_fabio_image.Test50000.testcopy) 657s test the copy statement ... ok 657s INFO:memProf:Time: 0.011s RAM: 6.144 Mb fabio.test.test_fabio_image.Test50000.testcopy 657s testgetmax (fabio.test.test_fabio_image.Test50000.testgetmax) 657s check max ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.288 Mb fabio.test.test_fabio_image.Test50000.testgetmax 657s testgetmean (fabio.test.test_fabio_image.Test50000.testgetmean) 657s check mean ... ok 657s INFO:memProf:Time: 0.005s RAM: 0.124 Mb fabio.test.test_fabio_image.Test50000.testgetmean 657s testgetmin (fabio.test.test_fabio_image.Test50000.testgetmin) 657s check min ... ok 657s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_fabio_image.Test50000.testgetmin 657s testgetstddev (fabio.test.test_fabio_image.Test50000.testgetstddev) 657s check stddev ... ok 657s INFO:memProf:Time: 0.009s RAM: 8.320 Mb fabio.test.test_fabio_image.Test50000.testgetstddev 657s testRebin (fabio.test.test_fabio_image.TestSlices.testRebin) 657s Test the rebin method ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testRebin 657s testgetmax (fabio.test.test_fabio_image.TestSlices.testgetmax) 657s check max ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmax 657s testgetmin (fabio.test.test_fabio_image.TestSlices.testgetmin) 657s check min ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmin 657s testintegratearea (fabio.test.test_fabio_image.TestSlices.testintegratearea) 657s check integrations ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testintegratearea 657s testFlat (fabio.test.test_fabio_image.TestOpen.testFlat) 657s no compression ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testFlat 657s test_badtype (fabio.test.test_fabio_image.TestOpen.test_badtype) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_badtype 657s test_pathlib (fabio.test.test_fabio_image.TestOpen.test_pathlib) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_pathlib 657s testbz2 (fabio.test.test_fabio_image.TestOpen.testbz2) 657s bzipped ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testbz2 657s testgz (fabio.test.test_fabio_image.TestOpen.testgz) 657s gzipped ... ok 657s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testgz 657s testpil (fabio.test.test_fabio_image.TestPilImage.testpil) ... WARNING:fabio.DEPRECATION:Function toPIL16 is deprecated since fabio version 0.9. Reason: Not maintained. Use 'fabio.utils.pilutils.create_pil_16' instead. 657s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 209, in testpil 657s pim = img.toPIL16() 657s ok 657s INFO:memProf:Time: 0.047s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage.testpil 657s testpil (fabio.test.test_fabio_image.TestPilImage2.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:232: RuntimeWarning: invalid value encountered in cast 657s return (numpy.random.random(shape) * sys.maxsize / 10).astype(typ) 657s 657s ok 657s INFO:memProf:Time: 0.057s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage2.testpil 657s testpil (fabio.test.test_fabio_image.TestPilImage3.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:240: RuntimeWarning: invalid value encountered in cast 657s return ((numpy.random.random(shape) - 0.5) * sys.maxsize / 10).astype(typ) 657s 657s ok 657s INFO:memProf:Time: 0.059s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage3.testpil 657s test_cleanup_pilimage_cache (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache) ... WARNING:fabio.DEPRECATION:Function pilimage is deprecated. Reason: Setting pilimage not supported. This attrbute is not cached anymore. 657s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 257, in test_cleanup_pilimage_cache 657s image.pilimage = None 657s ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache 657s test_patch_dim (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim) ... WARNING:fabio.DEPRECATION:Function dim2 is deprecated. Reason: dim2 should not be updated. 657s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 657s image.dim2, image.dim1 = data.shape 657s WARNING:fabio.DEPRECATION:Function dim1 is deprecated. Reason: dim1 should not be updated. 657s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 657s image.dim2, image.dim1 = data.shape 657s ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim 657s test_many_cases (fabio.test.test_filenames.TestFilenames.test_many_cases) 657s loop over CASES ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_many_cases 657s test_more_cases (fabio.test.test_filenames.TestFilenames.test_more_cases) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases 657s test_more_cases_jump (fabio.test.test_filenames.TestFilenames.test_more_cases_jump) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases_jump 657s test_FileNameObject_can_iterate (fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate) 657s Regression test for Fable ... ok 657s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate 657s test_files_are_being_opened (fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened) 657s Regression test for Fable ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened 657s testfirst (fabio.test.test_file_series.TestRandomSeries.testfirst) 657s check first ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testfirst 657s testjump (fabio.test.test_file_series.TestRandomSeries.testjump) 657s check jump ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testjump 657s testlast (fabio.test.test_file_series.TestRandomSeries.testlast) 657s check first ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testlast 657s testfirst (fabio.test.test_file_series.TestEdfNumbered.testfirst) 657s first in series ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testfirst 657s testlast (fabio.test.test_file_series.TestEdfNumbered.testlast) 657s last in series ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlast 657s testlen (fabio.test.test_file_series.TestEdfNumbered.testlen) 657s check len ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlen 657s testnext (fabio.test.test_file_series.TestEdfNumbered.testnext) 657s check all in order ... ok 657s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnext 657s testnextjump (fabio.test.test_file_series.TestEdfNumbered.testnextjump) 657s check current ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnextjump 657s testprevious (fabio.test.test_file_series.TestEdfNumbered.testprevious) 657s check all in order ... ok 657s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevious 657s testprevjump (fabio.test.test_file_series.TestEdfNumbered.testprevjump) 657s check current ... ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevjump 657s test_anyframe_frames (fabio.test.test_file_series.TestFileSeries.test_anyframe_frames) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_frames 657s test_anyframe_getframe (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe 657s test_anyframe_getframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes) ... ok 657s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes 657s test_anyframe_nframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes 657s test_anyframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles 657s test_filename_generator (fabio.test.test_file_series.TestFileSeries.test_filename_generator) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_generator 657s test_filename_iterator (fabio.test.test_file_series.TestFileSeries.test_filename_iterator) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_iterator 657s test_multiframe_frames (fabio.test.test_file_series.TestFileSeries.test_multiframe_frames) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_frames 657s test_multiframe_getframe (fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe 657s test_multiframe_nframes (fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes 657s test_multiframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles 657s test_singleframe_frames (fabio.test.test_file_series.TestFileSeries.test_singleframe_frames) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_frames 657s test_singleframe_getframe (fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe 657s test_singleframe_nframes (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes 657s test_singleframe_nframes2 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2 657s test_singleframe_nframes3 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3 657s test_singleframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles 657s test_with_filename_series (fabio.test.test_file_series.TestFileSeries.test_with_filename_series) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_filename_series 657s test_with_numbered_file_series (fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series) ... ok 657s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series 657s test_next1 (fabio.test.test_filename_steps.TestNext.test_next1) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestNext.test_next1 657s test_prev1 (fabio.test.test_filename_steps.TestPrev.test_prev1) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestPrev.test_prev1 657s test_jump1 (fabio.test.test_filename_steps.TestJump.test_jump1) ... ok 657s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestJump.test_jump1 657s testheader (fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 657s ok 657s INFO:memProf:Time: 0.039s RAM: 42.868 Mb fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader 657s testcase (fabio.test.test_open_header.Test1.testcase) 657s check openheader can read edf headers ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675_header_only.edf.bz2') 657s ok 657s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_open_header.Test1.testcase 657s testAdsc (fabio.test.test_open_image.TestOpenDtrek.testAdsc) 657s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 657s ok 657s INFO:memProf:Time: 0.088s RAM: 147.476 Mb fabio.test.test_open_image.TestOpenDtrek.testAdsc 657s testAdscBz2 (fabio.test.test_open_image.TestOpenDtrek.testAdscBz2) 657s openimage opening adsc bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 661s ok 661s INFO:memProf:Time: 3.818s RAM: 5.152 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscBz2 661s testAdscGz (fabio.test.test_open_image.TestOpenDtrek.testAdscGz) 661s openimage opening adsc gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.gz') 661s ok 661s INFO:memProf:Time: 0.252s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscGz 661s testBruker (fabio.test.test_open_image.TestOpenBruker.testBruker) 661s openimage opening bruker ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 661s ok 661s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBruker 661s testBrukerBz2 (fabio.test.test_open_image.TestOpenBruker.testBrukerBz2) 661s openimage opening bruker bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 661s ok 661s INFO:memProf:Time: 0.066s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerBz2 661s testBrukerGz (fabio.test.test_open_image.TestOpenBruker.testBrukerGz) 661s openimage opening bruker gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.gz') 661s ok 661s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerGz 661s testEdf (fabio.test.test_open_image.TestOpenEdf.testEdf) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 661s ok 661s INFO:memProf:Time: 0.031s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdf 661s testEdfBz2 (fabio.test.test_open_image.TestOpenEdf.testEdfBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 665s ok 665s INFO:memProf:Time: 3.716s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfBz2 665s testEdfGz (fabio.test.test_open_image.TestOpenEdf.testEdfGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.gz') 665s ok 665s INFO:memProf:Time: 0.233s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfGz 665s testMask (fabio.test.test_open_image.TestOpenMask.testMask) 665s openimage opening fit2d msk ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 665s ok 665s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMask 665s testMaskBz2 (fabio.test.test_open_image.TestOpenMask.testMaskBz2) 665s openimage opening fit2d msk bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 665s ok 665s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskBz2 665s testMaskGz (fabio.test.test_open_image.TestOpenMask.testMaskGz) 665s openimage opening fit2d msk gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.gz') 665s ok 665s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskGz 665s testMccd (fabio.test.test_open_image.TestOpenMccd.testMccd) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 665s ok 665s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccd 665s testMccdBz2 (fabio.test.test_open_image.TestOpenMccd.testMccdBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 666s ok 666s INFO:memProf:Time: 0.312s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdBz2 666s testMccdGz (fabio.test.test_open_image.TestOpenMccd.testMccdGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.gz') 666s ok 666s INFO:memProf:Time: 0.026s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdGz 666s testOxd (fabio.test.test_open_image.TestOpenOxd.testOxd) 666s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 666s ok 666s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxd 666s testOxdUnc (fabio.test.test_open_image.TestOpenOxd.testOxdUnc) 666s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 666s ok 666s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxdUnc 666s testComp (fabio.test.test_compression.TestByteOffset.testComp) ... ok 666s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testComp 666s testSC (fabio.test.test_compression.TestByteOffset.testSC) 666s test that datasets are unchanged after various compression/decompressions ... ok 666s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testSC 666s test_from_time (fabio.test.test_nexus.TestNexus.test_from_time) ... ok 666s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_from_time 666s test_nexus (fabio.test.test_nexus.TestNexus.test_nexus) 666s Test creation of Nexus files ... ok 666s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_nexus 666s testDefaultOption (fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -F=msk -o=output 666s INFO:fabio.test.test_fabio_convert:Return code: 0 666s ok 666s INFO:memProf:Time: 0.344s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption 666s testForceOption (fabio.test.test_fabio_convert.TestFabioConvert.testForceOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -f -F=msk -o=output 666s INFO:fabio.test.test_fabio_convert:Return code: 0 666s ok 666s INFO:memProf:Time: 0.323s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testForceOption 666s testFullFormatName (fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=numpyimage -o=output 667s INFO:fabio.test.test_fabio_convert:Return code: 0 667s ok 667s INFO:memProf:Time: 0.316s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName 667s testInteractiveOption (fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -i -F=msk -o=output 667s INFO:fabio.test.test_fabio_convert:Return code: 0 667s ok 667s INFO:memProf:Time: 0.326s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption 667s testNoClobberOption (fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -F=msk -o=output 667s INFO:fabio.test.test_fabio_convert:Return code: 0 667s ok 667s INFO:memProf:Time: 0.326s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption 667s testRemoveDestinationOption (fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --remove-destination -F=msk -o=output 668s INFO:fabio.test.test_fabio_convert:Return code: 0 668s ok 668s INFO:memProf:Time: 0.353s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption 668s testSingleFile (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -o=output/03.msk 668s INFO:fabio.test.test_fabio_convert:Return code: 0 668s ok 668s INFO:memProf:Time: 0.344s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile 668s testSingleFileToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -F=msk -o=output 668s INFO:fabio.test.test_fabio_convert:Return code: 0 668s ok 668s INFO:memProf:Time: 0.353s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir 668s testSingleFileWithWildcardToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=msk -o=output 669s INFO:fabio.test.test_fabio_convert:Return code: 0 669s ok 669s INFO:memProf:Time: 0.371s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir 669s testUpdateOption (fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.13 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --update -F=msk -o=output 669s INFO:fabio.test.test_fabio_convert:Return code: 0 669s ok 669s INFO:memProf:Time: 0.353s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption 669s test_missing_file (fabio.test.test_failing_files.TestFailingFiles.test_missing_file) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_missing_file 669s test_wrong_dm3 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3) ... ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3 669s test_wrong_edf (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf 669s test_wrong_edf2 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2 669s test_wrong_format (fabio.test.test_failing_files.TestFailingFiles.test_wrong_format) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_format 669s test_wrong_msk (fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk 669s test_wrong_numpy (fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy 669s test_annotation (fabio.test.test_formats.TestRegistration.test_annotation) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_annotation 669s test_deprecated_fabioimage_factory (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory) 669s Check that it is still working ... ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory 669s test_deprecated_fabioimage_factory_missing_format (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format) 669s Check that it is still working ... ok 669s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format 669s test_fabio_factory (fabio.test.test_formats.TestRegistration.test_fabio_factory) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory 669s test_fabio_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format 669s test_fabioformats_factory (fabio.test.test_formats.TestRegistration.test_fabioformats_factory) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory 669s test_fabioformats_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format 669s test_function (fabio.test.test_formats.TestRegistration.test_function) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_function 669s test_not_existing (fabio.test.test_formats.TestRegistration.test_not_existing) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_not_existing 669s test_edf_to_tiff (fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf') 669s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 669s ok 669s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff 669s test_append (fabio.test.test_tiffio.TestTiffIO.test_append) ... ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_append 669s test_read (fabio.test.test_tiffio.TestTiffIO.test_read) ... INFO:fabio.test.test_tiffio:nRows = 100 669s INFO:fabio.test.test_tiffio:nColumns = 100 669s INFO:fabio.test.test_tiffio:nBits = 16 669s INFO:fabio.test.test_tiffio:compression = False 669s INFO:fabio.test.test_tiffio:compression_type = 1 669s INFO:fabio.test.test_tiffio:imageDescription = Title=1st 669s 669s INFO:fabio.test.test_tiffio:stripOffsets = [168] 669s INFO:fabio.test.test_tiffio:rowsPerStrip = 100 669s INFO:fabio.test.test_tiffio:stripByteCounts = [20000] 669s INFO:fabio.test.test_tiffio:software = PyMca.TiffIO 669s INFO:fabio.test.test_tiffio:date = Unknown Date 669s INFO:fabio.test.test_tiffio:sampleFormat = 1 669s INFO:fabio.test.test_tiffio:photometricInterpretation = 1 669s INFO:fabio.test.test_tiffio:info = {'Title': '1st'} 669s INFO:fabio.test.test_tiffio:data [0, 0:10] = [0 1 2 3 4 5 6 7 8 9] 669s ok 669s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_read 669s test_write (fabio.test.test_tiffio.TestTiffIO.test_write) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_write 669s test_single_frame_iterator (fabio.test.test_frames.TestFabioImage.test_single_frame_iterator) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestFabioImage.test_single_frame_iterator 669s test_content (fabio.test.test_frames.TestVirtualEdf.test_content) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_content 669s test_frames_abort_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration 669s test_frames_full_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration 669s test_frames_random_access (fabio.test.test_frames.TestVirtualEdf.test_frames_random_access) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_random_access 669s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s test_content (fabio.test.test_frames.TestEdf.test_content) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_content 669s test_frames_abort_iteration (fabio.test.test_frames.TestEdf.test_frames_abort_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_abort_iteration 669s test_frames_full_iteration (fabio.test.test_frames.TestEdf.test_frames_full_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_full_iteration 669s test_frames_random_access (fabio.test.test_frames.TestEdf.test_frames_random_access) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_random_access 669s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 669s test_content (fabio.test.test_frames.TestTiff.test_content) ... ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_content 669s test_frames_abort_iteration (fabio.test.test_frames.TestTiff.test_frames_abort_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_abort_iteration 669s test_frames_full_iteration (fabio.test.test_frames.TestTiff.test_frames_full_iteration) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_full_iteration 669s test_frames_random_access (fabio.test.test_frames.TestTiff.test_frames_random_access) ... ok 669s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_random_access 669s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 669s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s test_frames_abort_iteration (fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration) ... ok 669s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration 669s test_frames_full_iteration (fabio.test.test_frames.TestFileSeries.test_frames_full_iteration) ... ok 669s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_full_iteration 669s test_frames_random_access (fabio.test.test_frames.TestFileSeries.test_frames_random_access) ... ok 669s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_random_access 669s test_open (fabio.test.test_fabio.TestFabio.test_open) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open 669s test_open_bytesio (fabio.test.test_fabio.TestFabio.test_open_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_bytesio 669s test_open_fabio_bytesio (fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio 669s test_open_series (fabio.test.test_fabio.TestFabio.test_open_series) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series 669s test_open_series_first_filename (fabio.test.test_fabio.TestFabio.test_open_series_first_filename) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_first_filename 669s test_open_series_with (fabio.test.test_fabio.TestFabio.test_open_series_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_with 669s test_open_with (fabio.test.test_fabio.TestFabio.test_open_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_with 669s test_getstats (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats) 669s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats 669s test_headers (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers 669s test_read (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read) 669s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read 669s test_getstats (fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats) 669s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.087s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats 669s test_headers (fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers 669s test_read (fabio.test.codecs.test_edfimage.TestBzipEdf.test_read) 669s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_read 669s test_getstats (fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats) 669s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats 669s test_headers (fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers 669s test_read (fabio.test.codecs.test_edfimage.TestGzipEdf.test_read) 669s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 669s ok 669s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_read 669s test_read (fabio.test.codecs.test_edfimage.TestEdfs.test_read) 669s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 669s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 669s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf Mean: exp=1504.29, obt=1504.291387796402 669s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf StdDev: exp=217.61, obt=217.60628547694915 671s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 Mean: exp=1504.29, obt=1504.291387796402 671s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 StdDev: exp=217.61, obt=217.60628547694915 671s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz Mean: exp=1504.29, obt=1504.291387796402 671s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz StdDev: exp=217.61, obt=217.60628547694915 671s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf Mean: exp=275.62, obt=275.6165885925293 671s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf StdDev: exp=583.44, obt=583.4356660155632 671s ok 671s INFO:memProf:Time: 1.933s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_read 671s test_rebin (fabio.test.codecs.test_edfimage.TestEdfs.test_rebin) 671s test the rebin of edfdata ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 671s ok 671s INFO:memProf:Time: 0.018s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_rebin 671s test_read (fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read) 671s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfGzip_U16.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfUncompressed_U16.edf.bz2') 671s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 671s INFO:fabio.edfimage:Data stream is padded : 8389062 > required 8388608 bytes 671s ok 671s INFO:memProf:Time: 0.158s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read 671s test_getFrame_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono 671s test_getFrame_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi 671s test_next_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi 671s test_openimage_multiframes (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes) 671s test if openimage can directly read first or second frame of a multi-frame ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes 671s test_previous_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono 671s test_previous_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 671s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 671s ok 671s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi 671s test_fastread (fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 672s ok 672s INFO:memProf:Time: 0.709s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread 672s testBzip2 (fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2) ... ok 672s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2 672s testFlat (fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat) ... ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat 672s testGzip (fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip) ... ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip 672s test_bug_27 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27) 672s import fabio ... ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27 672s test_bug_459 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459 672s test_remove_metadata_header (fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 672s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header 672s test_base (fabio.test.codecs.test_edfimage.TestBadFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 1) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_base 672s test_empty (fabio.test.codecs.test_edfimage.TestBadFiles.test_empty) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_empty 672s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header 672s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 1) misses mandatory keys: SIZE HEADERID 672s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data 672s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 1) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data 672s test_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header 672s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data 672s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data 672s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic 672s test_base (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base 672s test_empty (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty 672s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header 672s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data 672s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data 672s test_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header 672s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data 672s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_u9kjee2y_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 672s ok 672s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data 672s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic) ... ok 672s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic 672s test_multi_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame) 672s Test iterator on a multi-frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 673s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 674s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 674s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 674s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 674s ok 674s INFO:memProf:Time: 2.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame 674s test_single_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame) 674s Test iterator on a single frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf') 674s ok 674s INFO:memProf:Time: 0.071s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame 674s test_all_images (fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 674s fd.extractall(output) 674s 674s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 674s INFO:fabio.edfimage:Data stream is padded : 80484 > required 80000 bytes 674s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 674s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 674s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 674s ok 674s INFO:memProf:Time: 0.090s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images 674s testNonAsciiHeader (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader) 674s Non-ascii characters are skipped. ... WARNING:fabio.edfimage:Non ASCII in key-value: Drop b'mykey' = b'\xc3\xa9yvalue' 674s ok 674s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader 674s testReadBadPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding) 674s Some old data were found with headers padded with 0xcd (issue #373) ... ok 674s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding 674s testReadGoodPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding) ... ok 674s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding 674s testReadZeroPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding) ... ok 674s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding 674s test_edf6_single_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz) 674s Test reading gzipped data files linking to an external binary data file. ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 674s fd.extractall(output) 674s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 675s ok 675s INFO:memProf:Time: 0.212s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz 675s test_edfblocktypes (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes) 675s Test reading (gzipped) extended edf multi frame data files with and without a general block ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 675s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 675s ok 675s INFO:memProf:Time: 0.258s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes 675s test_edfmulti_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk) 675s Reading an uncompressed edf-multi-frame-file with references to data ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 675s fd.extractall(output) 675s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 675s ok 675s INFO:memProf:Time: 0.353s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk 675s test_edfmulti_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz) 675s Test reading the files of the test test_edfmulti_raw_bf_gblk after ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 675s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s ok 676s INFO:memProf:Time: 0.367s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz 676s test_edfmulti_raw_dark_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk) 676s Linking data of several frames to different parts of a single external ... INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 676s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 676s ok 676s INFO:memProf:Time: 0.215s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk 676s test_edfsingle_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk) 676s Reading an uncompressed edf-single-frame-file with references to data ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 676s ok 676s INFO:memProf:Time: 0.217s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk 676s test_edfsingle_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz) 676s Test reading gzipped data files linking to an external binary data file. ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 676s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 676s ok 676s INFO:memProf:Time: 0.219s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz 676s test_pitfalls (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls) 676s multi5+headerblob_edf1.edf.gz ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 676s ok 676s INFO:memProf:Time: 0.263s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls 676s test_special (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special) 677s 09_special/face_ok.edf.gz ... INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 677s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 677s ok 677s INFO:memProf:Time: 0.226s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special 677s test_bug_388 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388 677s test_bug_408 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408) 677s Bug when reading files generated by XDS ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XDS.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408 677s test_bug_528 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528) 677s Bug when writing/reading small files ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528 677s test_bug_535 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535) 677s Bug when reading files with long path in header ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref-test_5_0001.cbf') 677s ok 677s INFO:memProf:Time: 0.024s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535 677s test_byte_offset (fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset) 677s check byte offset algorithm ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s INFO:fabio.test.codecs.test_cbfimage:Timing for Numpy method : 0.193s 677s INFO:fabio.test.codecs.test_cbfimage:Timing for Cython method : 0.013s, max delta= 0 677s ok 677s INFO:memProf:Time: 0.255s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset 677s test_cif (fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif 677s test_consitency_convert (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert) 677s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.101s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert 677s test_consitency_manual (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual) 677s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.107s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual 677s test_read (fabio.test.codecs.test_cbfimage.TestCbfReader.test_read) 677s check whole reader ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s INFO:fabio.test.codecs.test_cbfimage:Reading CBF took 0.029s whereas the same EDF took 0.001s 677s ok 677s INFO:memProf:Time: 0.058s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_read 677s test_unicode (fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode) 677s Test if an image can be read and saved to an unicode named ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.106s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode 677s test_write (fabio.test.codecs.test_cbfimage.TestCbfReader.test_write) 677s Rest writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 677s ok 677s INFO:memProf:Time: 0.106s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_write 677s testsame (fabio.test.codecs.test_dtrekimage.TestMatch.testsame) 677s test ADSC image match to EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 677s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.edf.bz2') 678s ok 678s INFO:memProf:Time: 0.093s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestMatch.testsame 678s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 678s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('HSA_1_5mg_C1_0004.img.bz2') 678s test_read (fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read) 681s check we can read flat ADSC images ... ok 681s INFO:memProf:Time: 3.285s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read 681s test_write_and_read (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read) ... WARNING:fabio.dtrekimage:Data type uint64 unsupported. Store it as uint32. 681s WARNING:fabio.dtrekimage:Data type int64 unsupported. Store it as int32. 681s WARNING:fabio.dtrekimage:Data type float16 unsupported. Store it as float32. 681s ok 681s INFO:memProf:Time: 0.021s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read 681s test_write_and_read_cube (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube) ... ok 681s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube 681s test_write_and_read_empty (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty) ... ok 681s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty 681s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch) 681s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 681s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 681s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 681s ok 681s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch 681s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch) 681s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 681s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 681s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/fit2d_click.edf (frame 0) misses mandatory keys: SIZE 681s ok 681s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch 681s test_read (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read) 681s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 681s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 681s ok 681s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read 681s testBzip2 (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2) ... ok 681s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2 681s testFlat (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat) ... ok 681s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat 681s testGzip (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip) ... ok 681s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip 681s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.spr.bz2') 681s test_read (fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read) 684s check we can read flat ADSC images ... ok 684s INFO:memProf:Time: 3.319s RAM: 0.000 Mb fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read 684s test_read (fabio.test.codecs.test_geimage.TestGE.test_read) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.bz2') 684s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.gz') 684s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529') 684s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_intact_header.ge') 684s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_blanked_header.ge') 684s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('dark_before_000428.edf.ge5') 685s ok 685s INFO:memProf:Time: 0.913s RAM: 0.000 Mb fabio.test.codecs.test_geimage.TestGE.test_read 685s test_aux (fabio.test.codecs.test_mar345image.TestMar345.test_aux) 685s test auxillary functions ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 685s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 685s ok 685s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_aux 685s test_byteswap_write (fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write) 685s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 685s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 690s ok 690s INFO:memProf:Time: 5.241s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write 690s test_memoryleak (fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak) 690s This test takes a lot of time, so only in debug mode. ... skipped 'very slow test' 690s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak 690s test_read (fabio.test.codecs.test_mar345image.TestMar345.test_read) 690s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 690s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 690s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300') 690s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 691s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.gz') 691s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560') 691s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 692s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.gz') 692s ok 692s INFO:memProf:Time: 1.811s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_read 692s test_write (fabio.test.codecs.test_mar345image.TestMar345.test_write) 692s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 692s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 698s ok 698s INFO:memProf:Time: 5.347s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_write 698s test_read (fabio.test.codecs.test_brukerimage.TestBruker.test_read) 698s see if we can read the test image ... ok 698s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBruker.test_read 698s test_read (fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read) 698s see if we can read the test image ... ok 698s INFO:memProf:Time: 0.035s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read 698s test_read (fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read) 698s see if we can read the test image ... ok 698s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read 698s test_read (fabio.test.codecs.test_brukerimage.TestRealImg.test_read) 698s check we can read bruker images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 698s ok 698s INFO:memProf:Time: 0.038s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_read 698s test_write (fabio.test.codecs.test_brukerimage.TestRealImg.test_write) 698s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 698s ok 698s INFO:memProf:Time: 0.175s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_write 698s test_linear (fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear) 698s test for self consistency of random data read/write ... WARNING:fabio.brukerimage:performing correction with slope=5.960436055827938e-08, offset=2.1851517e-06 (LINEAR=5.960436055827938e-08 2.1851517e-06) 698s ok 698s INFO:memProf:Time: 0.011s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear 698s test_conversion (fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testcbf.cbf.bz2') 698s ok 698s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion 698s test_read (fabio.test.codecs.test_bruker100image.TestBruker100.test_read) 698s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 698s ok 698s INFO:memProf:Time: 0.031s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_read 698s test_same (fabio.test.codecs.test_bruker100image.TestBruker100.test_same) 698s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 698s ok 698s INFO:memProf:Time: 0.143s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_same 698s test_split_merge (fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge) 698s Pretty challanging random example ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 698s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (65142,) overflow1 (100,) overflow2: (97,) 698s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (1521,) overflow1 (163,) overflow2: (97,) 698s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (0,) overflow1 (1566,) overflow2: (1500,) 698s ok 698s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge 698s test_write (fabio.test.codecs.test_bruker100image.TestBruker100.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 698s ok 698s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_write 698s test_read (fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read) 698s check we can read MarCCD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('corkcont2_H_0089.mccd.bz2') 698s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 699s ok 699s INFO:memProf:Time: 0.693s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read 699s test_read_openimage (fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage) ... ok 699s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage 699s test_read (fabio.test.codecs.test_oxdimage.TestOxd.test_read) 699s Test reading of compressed OXD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 699s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 699s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 699s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 699s INFO:fabio.OXDimage:Compressed with the TY5 compression 699s INFO:fabio.OXDimage:TY5 decompression is slow for now 702s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 702s ok 702s INFO:memProf:Time: 3.105s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_read 702s test_write (fabio.test.codecs.test_oxdimage.TestOxd.test_write) 702s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 702s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 702s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 702s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 702s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 702s INFO:fabio.OXDimage:Compressed with the TY5 compression 702s INFO:fabio.OXDimage:TY5 decompression is slow for now 705s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 705s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 705s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 705s ok 705s INFO:memProf:Time: 3.039s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_write 705s test_same (fabio.test.codecs.test_oxdimage.TestOxdSame.test_same) 705s test if images are actually the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 705s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 705s ok 705s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdSame.test_same 705s test_same (fabio.test.codecs.test_oxdimage.TestOxdBig.test_same) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.img.bz2') 705s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.edf.bz2') 705s WARNING:fabio.edfimage:Unknown compression scheme TY1 705s ok 705s INFO:memProf:Time: 0.092s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdBig.test_same 705s test_convert (fabio.test.codecs.test_oxdimage.TestConvert.test_convert) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 705s WARNING:fabio.OXDimage:Enforce TY1 compression 705s ok 705s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestConvert.test_convert 705s test_read (fabio.test.codecs.test_kcdimage.TestKcd.test_read) 705s check we can read kcd images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 705s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 706s ok 706s INFO:memProf:Time: 0.666s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_read 706s test_same (fabio.test.codecs.test_kcdimage.TestKcd.test_same) 706s see if we can read kcd images and if they are the same as the EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 706s ok 706s INFO:memProf:Time: 0.368s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_same 706s test_bug502 (fabio.test.codecs.test_tifimage.TestTif.test_bug502) 706s Test the reading of a frame with wrong Photometric interpretation ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.npy') 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.tif') 706s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 706s ok 706s INFO:memProf:Time: 0.019s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_bug502 706s test_frame (fabio.test.codecs.test_tifimage.TestTif.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s ok 706s INFO:memProf:Time: 0.250s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_frame 706s test_header (fabio.test.codecs.test_tifimage.TestTif.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 706s WARNING:fabio.TiffIO:Bogus StripByteCounts information 706s ok 706s INFO:memProf:Time: 0.239s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_header 706s test_read (fabio.test.codecs.test_tifimage.TestTif.test_read) 706s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 707s WARNING:fabio.TiffIO:Bogus StripByteCounts information 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 707s WARNING:fabio.TiffIO:Bogus StripByteCounts information 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 707s WARNING:fabio.TiffIO:Bogus StripByteCounts information 707s ok 707s INFO:memProf:Time: 0.258s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_read 707s test1 (fabio.test.codecs.test_tifimage.TestGzipTif.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 707s ok 707s INFO:memProf:Time: 0.110s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestGzipTif.test1 707s test1 (fabio.test.codecs.test_tifimage.TestTif_Rect.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testmap1_0002.tif.bz2') 707s ok 707s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Rect.test1 707s test1 (fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1) 707s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.tif.bz2') 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.edf.bz2') 707s WARNING:fabio.TiffIO:Non standard TIFF. Rows per strip TAG missing 707s WARNING:fabio.TiffIO:Non standard TIFF. Strip byte counts TAG missing 707s ok 707s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1 707s test1 (fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1) 707s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.edf.bz2') 707s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 707s WARNING:fabio.edfimage:Unknown compression scheme FALSE 707s ok 707s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1 707s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1) 707s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.edf.bz2') 707s ok 707s INFO:memProf:Time: 0.568s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1 707s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1) 707s Testing pilatus tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.tif.bz2') 707s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.edf.bz2') 708s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 710s ok 710s INFO:memProf:Time: 2.545s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1 710s test_pil (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 710s ok 710s INFO:memProf:Time: 0.050s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil 710s test_tiffio (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Third dimension is the color 710s ok 710s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio 710s test_all_images (fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 710s fd.extractall(output) 710s 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif: no tiff reader managed to read the file. 710s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with TiffIO due to could not broadcast input array from shape (10,640,3) into shape (15,640,3), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with PIL: image file is truncated (1280 bytes not processed) 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif: no tiff reader managed to read the file. 710s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif: no tiff reader managed to read the file. 710s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/zackthecat.tif with TiffIO due to 273 is not in list, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-08.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ycbcr-cat.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with TiffIO due to Unsupported number of bits for unsigned int: 6, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/fax2d.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with TiffIO due to Unsupported number of bits for unsigned int: 10, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-16.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/strike.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with TiffIO due to Unsupported number of bits for unsigned int: 12, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with TiffIO due to cannot reshape array of size 65536 into shape (800), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with PIL: image file is truncated (126 bytes not processed) 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/text.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s ThunderDecode: Not enough data at scanline 320 (0 != 1512). 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/smallliz.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/g3test.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with TiffIO due to Unsupported number of bits for unsigned int: 14, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/oxford.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-tile.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-lzw.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif: no tiff reader managed to read the file. 710s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/jim___ah.tif with TiffIO due to Unsupported number of bits for unsigned int: 1, trying PIL 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Third dimension is the color 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with TiffIO due to Unsupported number of bits for unsigned int: 24, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif: no tiff reader managed to read the file. 710s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ladoga.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-jpeg.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with TiffIO due to cannot reshape array of size 2044 into shape (73,3), trying PIL 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with PIL: cannot identify image file 710s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif: no tiff reader managed to read the file. 710s WARNING:fabio.tifimage:Third dimension is the color 710s ok 710s INFO:memProf:Time: 0.189s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images 710s test_invert (fabio.test.codecs.test_xsdimage.TestXSD.test_invert) 710s Tests that 2 matrixes are invert ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 710s ok 710s INFO:memProf:Time: 0.114s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_invert 710s test_read (fabio.test.codecs.test_xsdimage.TestXSD.test_read) 710s Test reading of XSD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 710s INFO:fabio.test.codecs.test_xsdimage:XSDataImage.xml 667.15 667.1489268499176 710s INFO:fabio.test.codecs.test_xsdimage:XSDataImageInv.xml 0.01 0.010599090552568758 710s ok 710s INFO:memProf:Time: 0.017s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_read 710s test_same (fabio.test.codecs.test_xsdimage.TestXSD.test_same) 710s test if an image is the same as the EDF equivalent ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 710s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 710s ok 710s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_same 710s test_memoryleak (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak) 710s This test takes a lot of time, so only in debug mode. ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 710s ok 710s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak 710s test_read (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read) 710s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 712s ok 712s INFO:memProf:Time: 1.333s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read 712s test_read (fabio.test.codecs.test_pnmimage.TestPNM.test_read) 712s check we can read pnm images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 712s ok 712s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_read 712s test_write (fabio.test.codecs.test_pnmimage.TestPNM.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 712s ok 712s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_write 712s test_multidim (fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim) ... ok 712s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim 712s test_read (fabio.test.codecs.test_numpyimage.TestNumpy.test_read) 712s check we can read pnm images ... ok 712s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_read 712s test_write (fabio.test.codecs.test_numpyimage.TestNumpy.test_write) 712s check we can write numpy images ... ok 712s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_write 712s test_frame (fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 712s ok 712s INFO:memProf:Time: 0.089s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame 712s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 712s ok 712s INFO:memProf:Time: 0.091s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_header 712s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus.test_read) 712s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 712s ok 712s INFO:memProf:Time: 0.096s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_read 712s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 712s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 712s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 712s ok 712s INFO:memProf:Time: 0.134s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header 712s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read) 712s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 712s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 712s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 712s ok 712s INFO:memProf:Time: 0.134s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read 712s test_bug_479 (fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 712s ok 712s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479 712s test_frames_abort_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration) ... ok 712s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration 712s test_frames_full_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration) ... ok 712s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration 712s test_frames_random_access (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access) ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access 712s test_open (fabio.test.codecs.test_eigerimage.TestEiger.test_open) 712s check we can read images from Eiger ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_open 712s test_read (fabio.test.codecs.test_eigerimage.TestEiger.test_read) 712s check we can read images from Eiger ... ok 712s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_read 712s test_write (fabio.test.codecs.test_eigerimage.TestEiger.test_write) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 712s ok 712s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_write 712s test_iterate (fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate) ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate 712s test_next_frames (fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames) 712s check the legacy next API ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames 712s test_open (fabio.test.codecs.test_hdf5image.TestHdf5.test_open) 712s check we can read images from Eiger ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_open 712s test_read (fabio.test.codecs.test_hdf5image.TestHdf5.test_read) 712s check we can read images from Eiger ... ok 712s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_read 712s test_mask (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 712s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.f2d.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.msk.bz2') 713s ok 713s INFO:memProf:Time: 0.510s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask 713s test_match (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match) 713s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 713s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 713s ok 713s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match 713s test_read (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read) 713s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 713s ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2.SPE.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2_converted.SPE.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3.spe.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_custom_roi.spe.bz2') 713s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_2frames.spe.bz2') 713s test_calibration (fabio.test.codecs.test_speimage.TestSpeImage.test_calibration) ... ok 713s INFO:memProf:Time: 0.019s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_calibration 713s test_center_wavelength (fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength) ... ok 713s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength 713s test_detector (fabio.test.codecs.test_speimage.TestSpeImage.test_detector) ... ok 713s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_detector 713s test_exposure_time (fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time) ... ok 713s INFO:memProf:Time: 0.019s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time 713s test_fabio_integration (fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration) ... ok 713s INFO:memProf:Time: 0.147s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration 713s test_grating (fabio.test.codecs.test_speimage.TestSpeImage.test_grating) ... ok 713s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_grating 713s test_multiple_frames (fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames) ... ok 713s INFO:memProf:Time: 0.027s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames 713s test_read_data (fabio.test.codecs.test_speimage.TestSpeImage.test_read_data) ... ok 713s INFO:memProf:Time: 0.021s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_read_data 713s test_reading_version2_spe (fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe) ... ok 713s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe 713s test_roi (fabio.test.codecs.test_speimage.TestSpeImage.test_roi) ... ok 713s INFO:memProf:Time: 0.020s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_roi 713s test_time (fabio.test.codecs.test_speimage.TestSpeImage.test_time) ... ok 713s INFO:memProf:Time: 0.013s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_time 713s test_read_empty_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file) ... ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file 713s test_read_failing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file 713s test_read_missing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file) ... ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file 713s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8 713s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8 713s test_with_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil 713s test_without_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 713s ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil 713s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file) ... ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file 713s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16 713s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8 713s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format 713s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file) ... ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file 713s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16 713s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8 713s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format 713s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file) ... skipped 'glymur is not available or too old' 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file 713s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16) ... skipped 'glymur is not available or too old' 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16 713s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8) ... skipped 'glymur is not available or too old' 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8 713s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format) ... skipped 'glymur is not available or too old' 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format 713s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file) ... ok 713s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file 713s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16 713s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 713s ok 713s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8 713s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format) ... /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 713s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 713s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.bz2 rb 713s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.bz2 rb 713s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 713s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/fit2d.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/pilatus2M.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 713s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 713s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 713s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 713s 0 713s 1 713s 2 713s 3 713s 4 713s 5 713s 6 713s 7 713s 8 713s 9 713s 10 713s 11 713s 12 713s 13 713s 14 713s 15 713s 16 713s 17 713s 18 713s 19 713s 20 713s 21 713s 22 713s 23 713s 24 713s 25 713s 26 713s 27 713s 28 713s 29 713s 30 713s 31 713s 32 713s 33 713s 34 713s 35 713s 36 713s 37 713s 38 713s 39 713s 40 713s 41 713s 42 713s 43 713s 44 713s 45 713s 46 713s 47 713s 48 713s 49 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: 713s jpeg2kimage.PIL: INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 713s ok 713s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format 713s test_read (fabio.test.codecs.test_mpaimage.TestMpa.test_read) 713s Test the reading of multiwire images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mpa_test.mpa.bz2') 716s ok 716s INFO:memProf:Time: 3.029s RAM: 0.000 Mb fabio.test.codecs.test_mpaimage.TestMpa.test_read 716s test_read (fabio.test.codecs.test_dm3image.TestDm3Image.test_read) 716s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref_d20x_310mm.dm3.bz2') 721s ok 721s INFO:memProf:Time: 4.634s RAM: 0.000 Mb fabio.test.codecs.test_dm3image.TestDm3Image.test_read 721s test_read (fabio.test.codecs.test_mrcimage.TestMrc.test_read) 721s check we can read mrc images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 721s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 721s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 721s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 722s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got ok 722s INFO:memProf:Time: 1.629s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_read 722s test_same (fabio.test.codecs.test_mrcimage.TestMrc.test_same) 722s see if we can read mrc images and if they are the same as the numpy dump ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 722s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 722s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 722s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 722s INFO:fabio.test.codecs.test_mrcimage:Comparing files EMD-3001.map and EMD-3001.npy 722s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.test.codecs.test_mrcimage:Comparing files 0p67_5s_0000.mrc and 0p67_5s_0000.npy 723s ok 723s INFO:memProf:Time: 0.017s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_same 723s test_file_series (fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series) ... ok 723s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series 723s test_frames_abort_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration) ... ok 723s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration 723s test_frames_full_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration) ... ok 723s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration 723s test_frames_random_access (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access) ... ok 723s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access 723s test_multi_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame) ... ok 723s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame 723s test_single_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame) ... ok 723s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame 723s test_data (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data) ... INFO:fabio.esperantoimage:Esperanto accepts only integer data, rounding 723s INFO:fabio.esperantoimage:Padding image to be square, multiple of 4 and of size between 256 and 4096 723s ok 723s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data 723s test_header (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 724s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_u9kjee2y_ubuntu/4bytes_long.esperanto 724s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_u9kjee2y_ubuntu/agi_bitfield.esperanto 726s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 726s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_u9kjee2y_ubuntu/4bytes_long.esperanto 726s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_u9kjee2y_ubuntu/agi_bitfield.esperanto 726s ok 726s INFO:memProf:Time: 3.186s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header 726s test_read (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read) 726s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 727s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 727s ok 727s INFO:memProf:Time: 1.754s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read 727s test_values (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 727s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.npy.bz2') 727s ok 727s INFO:memProf:Time: 0.030s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values 727s test_frames_abort_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration) ... ok 727s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration 727s test_frames_full_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration) ... ok 727s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration 727s test_frames_random_access (fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access) ... ok 727s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access 727s test_identify (fabio.test.codecs.test_limaimage.TestLima.test_identify) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('output_sparse_0_00000.h5') 728s ok 728s INFO:memProf:Time: 0.035s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_identify 728s test_open (fabio.test.codecs.test_limaimage.TestLima.test_open) 728s test_open check we can read images from Lima ... ok 728s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_open 728s test_read (fabio.test.codecs.test_limaimage.TestLima.test_read) 728s test_read check we can read images from Lima ... ok 728s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_read 728s test_write (fabio.test.codecs.test_limaimage.TestLima.test_write) ... WARNING:fabio.limaimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 728s ok 728s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_write 728s test_read (fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read) 728s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Radiograph_SP8_BL47XU_HiPicimage.img.bz2') 730s ok 730s INFO:memProf:Time: 2.130s RAM: 0.000 Mb fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read 730s test_read (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read) 730s check we can read images from Eiger ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read 730s test_write (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write) ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0001.ccd') 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0005.ccd') 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0050.ccd') 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0059.ccd') 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0066.ccd') 730s test_parse (fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse) ... ok 730s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse 730s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf') 730s test_decomposition (fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition) ... WARNING:fabio.test.codecs.test_xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 730s WARNING:fabio.xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 730s ok 730s INFO:memProf:Time: 0.011s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition 730s test_compress_decode_field_overflow (fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow) ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow 730s test_compress_decompress_field_small (fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small) ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small 730s test_full_compress_decompress_field (fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field) ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field 730s test_get_fieldsize (fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize) ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize 730s test_mask_conv (fabio.test.test_agi_bitfield.TestUtil.test_mask_conv) ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_mask_conv 730s test_compress_row_small (fabio.test.test_agi_bitfield.TestRow.test_compress_row_small) ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_small 730s test_compress_row_zero (fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero) ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero 730s test_full_rand (fabio.test.test_agi_bitfield.TestCompression.test_full_rand) ... ok 730s INFO:memProf:Time: 0.068s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestCompression.test_full_rand 730s test_cython (fabio.test.test_densification.TestDensification.test_cython) ... ok 730s INFO:memProf:Time: 0.093s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_cython 730s test_rng_normal (fabio.test.test_densification.TestDensification.test_rng_normal) ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_normal 730s test_rng_uniform (fabio.test.test_densification.TestDensification.test_rng_uniform) ... 730s /tmp/fabio_u9kjee2y_ubuntu/lima3d.h5 730s /tmp/fabio_u9kjee2y_ubuntu/binary.npy 730s speed-up: 21.9692294175655 730s ##### 0 730s ##### 1 730s ##### 2 730s ##### 3 730s ##### 4 730s ##### 5 730s ##### 6 730s ##### 7 730s aaa [ ] 7% toto aaa [■■■■■■ ] 70% toto aaa [■■■■■■■■■■] 132% toto ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_uniform 730s setUpClass (fabio.test.test_io_limits.TestEdf) ... skipped 'test requires debug level logging' 730s setUpClass (fabio.test.test_io_limits.TestTiff) ... skipped 'test requires debug level logging' 730s test_coverage (fabio.test.test_utils_cli.TestUtilShell.test_coverage) 730s test function coverage ... ok 730s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_coverage 730s test_expand_args (fabio.test.test_utils_cli.TestUtilShell.test_expand_args) ... ok 730s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_expand_args 730s 730s ---------------------------------------------------------------------- 730s Ran 356 tests in 73.129s 730s 730s OK (skipped=7) 730s autopkgtest [12:44:45]: test command1: -----------------------] 731s autopkgtest [12:44:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 731s command1 PASS 731s autopkgtest [12:44:46]: @@@@@@@@@@@@@@@@@@@@ summary 731s command1 PASS 750s nova [W] Using flock in prodstack6-arm64 750s flock: timeout while waiting to get lock 750s Creating nova instance adt-plucky-arm64-python-fabio-20250219-123235-juju-7f2275-prod-proposed-migration-environment-20-12ac721f-9d25-42c1-a742-520a6a9f0ece from image adt/ubuntu-plucky-arm64-server-20250219.img (UUID 02c92adb-9d9d-4b0e-b071-488d8ee6210f)... 750s nova [W] Timed out waiting for c52f1fd4-64b6-47af-a67a-08da0460fd4c to get deleted.