0s autopkgtest [10:21:06]: starting date and time: 2024-11-13 10:21:06+0000 0s autopkgtest [10:21:06]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [10:21:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4csdmhcq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-deeptools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-17.secgroup --name adt-plucky-arm64-python-deeptools-20241113-102106-juju-7f2275-prod-proposed-migration-environment-2-e5083e6e-8fe4-4ddf-879a-a7ac9d94dccb --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 66s autopkgtest [10:22:12]: testbed dpkg architecture: arm64 67s autopkgtest [10:22:13]: testbed apt version: 2.9.8 67s autopkgtest [10:22:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 68s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 68s Fetched 1794 kB in 1s (2229 kB/s) 68s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 73s The following NEW packages will be installed: 73s python3.13-gdbm 73s The following packages will be upgraded: 73s libpython3-stdlib python3 python3-gdbm python3-minimal 73s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 73s Need to get 101 kB of archives. 73s After this operation, 141 kB of additional disk space will be used. 73s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 73s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 73s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 73s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 73s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 74s Fetched 101 kB in 0s (284 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 74s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 74s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 74s Setting up python3-minimal (3.12.7-1) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 74s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 74s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 74s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 74s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 74s Selecting previously unselected package python3.13-gdbm. 74s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 74s Unpacking python3.13-gdbm (3.13.0-2) ... 74s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 74s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 74s Setting up python3.13-gdbm (3.13.0-2) ... 74s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 74s Setting up python3 (3.12.7-1) ... 75s Setting up python3-gdbm:arm64 (3.12.7-1) ... 75s Processing triggers for man-db (2.12.1-3) ... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 77s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [10:22:29]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 83s autopkgtest [10:22:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-deeptools 86s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (dsc) [2548 B] 86s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (tar) [24.6 MB] 86s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (diff) [6080 B] 86s gpgv: Signature made Sun May 12 18:01:07 2024 UTC 86s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 86s gpgv: issuer "emollier@debian.org" 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./python-deeptools_3.5.5+dfsg-1.dsc: no acceptable signature found 87s autopkgtest [10:22:33]: testing package python-deeptools version 3.5.5+dfsg-1 88s autopkgtest [10:22:34]: build not needed 90s autopkgtest [10:22:36]: test pybuild-autopkgtest: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 92s The following additional packages will be installed: 92s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 92s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 92s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 92s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14 92s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 92s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 92s libarchive-zip-perl libasan8 libbigwig0t64 libblas3 libcc1-0 92s libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 92s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 92s libharfbuzz0b libhts3t64 libhtscodecs2 libhwasan0 libimagequant0 libisl23 92s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 92s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 92s liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 libpython3.13-minimal 92s libpython3.13-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-14-dev 92s libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 92s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 m4 92s po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 92s python-matplotlib-data python3-alabaster python3-all python3-appdirs 92s python3-brotli python3-build python3-contourpy python3-cycler 92s python3-dateutil python3-decorator python3-deeptools 92s python3-deeptoolsintervals python3-defusedxml python3-docutils 92s python3-fastjsonschema python3-fonttools python3-fs python3-imagesize 92s python3-iniconfig python3-installer python3-jupyter-core python3-kiwisolver 92s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-nbformat 92s python3-numpy python3-numpydoc python3-packaging python3-pil 92s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 92s python3-py2bit python3-pybigwig python3-pyproject-hooks python3-pysam 92s python3-pytest python3-roman python3-scipy python3-six 92s python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate 92s python3-tenacity python3-tk python3-toml python3-traitlets python3-tz 92s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-tk python3.13 92s python3.13-minimal python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 92s unicode-data x11-common xml-core 92s Suggested packages: 92s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 92s cpp-14-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex bison gdb 92s gcc-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 92s libjs-jquery-ui-docs liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 92s libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 92s python3-pip python3-venv python-build-doc python-cycler-doc 92s python-python-deeptoolsintervals-doc docutils-doc fonts-linuxlibertine 92s | ttf-linux-libertine texlive-lang-french texlive-latex-base 92s texlive-latex-recommended python-fastjsonschema-doc python-installer-doc 92s python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript 92s gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc 92s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 92s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 92s python3-gmpy2 gfortran python-numpy-doc python3-dev python-pil-doc 92s python3-pandas python3-ipykernel python-scipy-doc python3-stemmer dvisvgm 92s fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax 92s python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra 92s texlive-fonts-recommended texlive-plain-generic python-sympy-doc 92s python-tenacity-doc tix python3-tk-dbg python-traitlets-doc python3.13-venv 92s python3.13-doc binfmt-support sgml-base-doc 92s Recommended packages: 92s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 92s libmail-sendmail-perl libpaper-utils python3-bs4 python3-cssselect 92s python3-html5lib python3-olefile isympy-common 92s The following NEW packages will be installed: 92s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 92s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 92s debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 92s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 92s fonts-lyx g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 92s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext 92s intltool-debian libarchive-zip-perl libasan8 libbigwig0t64 libblas3 libcc1-0 92s libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 92s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 92s libharfbuzz0b libhts3t64 libhtscodecs2 libhwasan0 libimagequant0 libisl23 92s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 92s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 92s liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 libpython3.13-minimal 92s libpython3.13-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-14-dev 92s libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 92s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 m4 92s po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 92s python-matplotlib-data python3-alabaster python3-all python3-appdirs 92s python3-brotli python3-build python3-contourpy python3-cycler 92s python3-dateutil python3-decorator python3-deeptools 92s python3-deeptoolsintervals python3-defusedxml python3-docutils 92s python3-fastjsonschema python3-fonttools python3-fs python3-imagesize 92s python3-iniconfig python3-installer python3-jupyter-core python3-kiwisolver 92s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-nbformat 92s python3-numpy python3-numpydoc python3-packaging python3-pil 92s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 92s python3-py2bit python3-pybigwig python3-pyproject-hooks python3-pysam 92s python3-pytest python3-roman python3-scipy python3-six 92s python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate 92s python3-tenacity python3-tk python3-toml python3-traitlets python3-tz 92s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-tk python3.13 92s python3.13-minimal python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 92s unicode-data x11-common xml-core 92s 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 136 MB/136 MB of archives. 92s After this operation, 579 MB of additional disk space will be used. 92s Get:1 /tmp/autopkgtest.8Gw62Q/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [848 B] 93s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 93s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 93s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 93s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 93s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 93s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 93s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 93s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 93s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 93s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 93s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 93s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 93s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 93s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 93s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 93s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 93s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 93s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 93s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 93s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 93s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 93s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 93s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 94s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 94s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 94s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 94s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 94s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 94s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 94s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 94s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 94s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 94s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 94s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 94s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 94s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 95s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 95s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 95s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 95s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 95s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 95s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 95s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 95s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 95s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 95s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 95s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 95s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 95s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 96s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 96s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 96s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 96s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 96s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 96s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 96s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 96s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 96s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 96s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 96s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 96s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 96s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbigwig0t64 arm64 0.4.7+dfsg-3.1build2 [29.9 kB] 96s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 96s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 96s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 96s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 96s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 96s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB] 96s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.20+ds-1 [431 kB] 96s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 96s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 96s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 96s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 96s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 96s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 96s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 96s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 96s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 96s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 96s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 96s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 96s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 96s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 96s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 96s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 96s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 96s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 96s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 96s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 96s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 96s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 96s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 96s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 96s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 96s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 96s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB] 96s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 96s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 96s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 96s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB] 96s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 96s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 97s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 97s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 97s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 97s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB] 97s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 97s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 97s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 97s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 97s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-deeptoolsintervals arm64 0.1.9-3build9 [53.2 kB] 97s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 97s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 97s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 97s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 97s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 97s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B] 97s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 98s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 98s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 98s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 98s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 98s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 98s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 98s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 98s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 98s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 99s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 99s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB] 99s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB] 99s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB] 99s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB] 99s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 99s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB] 99s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 99s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 99s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 99s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB] 99s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 99s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-numpydoc all 1.6.0-2 [50.5 kB] 99s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 99s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 99s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 99s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 99s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 99s Get:147 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 99s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 99s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-py2bit arm64 0.3.1-3 [20.0 kB] 99s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybigwig arm64 0.3.23+dfsg-1 [48.4 kB] 99s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.22.1+ds-2 [3412 kB] 99s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-deeptools all 3.5.5+dfsg-1 [141 kB] 99s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 99s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 99s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 100s Fetched 136 MB in 7s (20.4 MB/s) 100s Selecting previously unselected package libpython3.13-minimal:arm64. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 100s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ... 100s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 100s Selecting previously unselected package python3.13-minimal. 100s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ... 100s Unpacking python3.13-minimal (3.13.0-2) ... 100s Selecting previously unselected package sgml-base. 100s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 100s Unpacking sgml-base (1.31) ... 100s Selecting previously unselected package m4. 100s Preparing to unpack .../003-m4_1.4.19-4build1_arm64.deb ... 100s Unpacking m4 (1.4.19-4build1) ... 100s Selecting previously unselected package autoconf. 100s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 100s Unpacking autoconf (2.72-3) ... 100s Selecting previously unselected package autotools-dev. 100s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 100s Unpacking autotools-dev (20220109.1) ... 100s Selecting previously unselected package automake. 100s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 100s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 100s Selecting previously unselected package autopoint. 100s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 100s Unpacking autopoint (0.22.5-2) ... 100s Selecting previously unselected package libtcl8.6:arm64. 100s Preparing to unpack .../008-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... 100s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... 100s Selecting previously unselected package fonts-dejavu-mono. 100s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 100s Unpacking fonts-dejavu-mono (2.37-8) ... 100s Selecting previously unselected package fonts-dejavu-core. 100s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 100s Unpacking fonts-dejavu-core (2.37-8) ... 100s Selecting previously unselected package fontconfig-config. 100s Preparing to unpack .../011-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 101s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 101s Selecting previously unselected package libfontconfig1:arm64. 101s Preparing to unpack .../012-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 101s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 101s Selecting previously unselected package libxrender1:arm64. 101s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 101s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 101s Selecting previously unselected package libxft2:arm64. 101s Preparing to unpack .../014-libxft2_2.3.6-1build1_arm64.deb ... 101s Unpacking libxft2:arm64 (2.3.6-1build1) ... 101s Selecting previously unselected package x11-common. 101s Preparing to unpack .../015-x11-common_1%3a7.7+23ubuntu3_all.deb ... 101s Unpacking x11-common (1:7.7+23ubuntu3) ... 101s Selecting previously unselected package libxss1:arm64. 101s Preparing to unpack .../016-libxss1_1%3a1.2.3-1build3_arm64.deb ... 101s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 101s Selecting previously unselected package libtk8.6:arm64. 101s Preparing to unpack .../017-libtk8.6_8.6.15-1_arm64.deb ... 101s Unpacking libtk8.6:arm64 (8.6.15-1) ... 101s Selecting previously unselected package tk8.6-blt2.5. 101s Preparing to unpack .../018-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 101s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 101s Selecting previously unselected package blt. 101s Preparing to unpack .../019-blt_2.5.3+dfsg-7build1_arm64.deb ... 101s Unpacking blt (2.5.3+dfsg-7build1) ... 101s Selecting previously unselected package libisl23:arm64. 101s Preparing to unpack .../020-libisl23_0.27-1_arm64.deb ... 101s Unpacking libisl23:arm64 (0.27-1) ... 101s Selecting previously unselected package libmpc3:arm64. 101s Preparing to unpack .../021-libmpc3_1.3.1-1build2_arm64.deb ... 101s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 101s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 101s Preparing to unpack .../022-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package cpp-14. 101s Preparing to unpack .../023-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package cpp-aarch64-linux-gnu. 101s Preparing to unpack .../024-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 101s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Selecting previously unselected package cpp. 101s Preparing to unpack .../025-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 101s Unpacking cpp (4:14.1.0-2ubuntu1) ... 101s Selecting previously unselected package libcc1-0:arm64. 101s Preparing to unpack .../026-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libgomp1:arm64. 101s Preparing to unpack .../027-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libitm1:arm64. 101s Preparing to unpack .../028-libitm1_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libasan8:arm64. 101s Preparing to unpack .../029-libasan8_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package liblsan0:arm64. 101s Preparing to unpack .../030-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libtsan2:arm64. 102s Preparing to unpack .../031-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libubsan1:arm64. 102s Preparing to unpack .../032-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libhwasan0:arm64. 102s Preparing to unpack .../033-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libgcc-14-dev:arm64. 102s Preparing to unpack .../034-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 102s Preparing to unpack .../035-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package gcc-14. 102s Preparing to unpack .../036-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package gcc-aarch64-linux-gnu. 102s Preparing to unpack .../037-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 102s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 102s Selecting previously unselected package gcc. 102s Preparing to unpack .../038-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 102s Unpacking gcc (4:14.1.0-2ubuntu1) ... 102s Selecting previously unselected package libstdc++-14-dev:arm64. 102s Preparing to unpack .../039-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-14-aarch64-linux-gnu. 103s Preparing to unpack .../040-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 103s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-14. 103s Preparing to unpack .../041-g++-14_14.2.0-8ubuntu1_arm64.deb ... 103s Unpacking g++-14 (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-aarch64-linux-gnu. 103s Preparing to unpack .../042-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package g++. 103s Preparing to unpack .../043-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking g++ (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package build-essential. 103s Preparing to unpack .../044-build-essential_12.10ubuntu1_arm64.deb ... 103s Unpacking build-essential (12.10ubuntu1) ... 103s Selecting previously unselected package libdebhelper-perl. 103s 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previously unselected package libblas3:arm64. 104s Preparing to unpack .../062-libblas3_3.12.0-3build2_arm64.deb ... 104s Unpacking libblas3:arm64 (3.12.0-3build2) ... 104s Selecting previously unselected package libdeflate0:arm64. 104s Preparing to unpack .../063-libdeflate0_1.22-1_arm64.deb ... 104s Unpacking libdeflate0:arm64 (1.22-1) ... 104s Selecting previously unselected package libgfortran5:arm64. 104s Preparing to unpack .../064-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 104s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 104s Selecting previously unselected package libgraphite2-3:arm64. 104s Preparing to unpack .../065-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 104s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 104s Selecting previously unselected package libharfbuzz0b:arm64. 104s Preparing to unpack .../066-libharfbuzz0b_10.0.1-1_arm64.deb ... 104s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 104s Selecting previously unselected package libhtscodecs2:arm64. 104s 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pybuild-plugin-pyproject (6.20241024) ... 105s Selecting previously unselected package python-matplotlib-data. 105s Preparing to unpack .../099-python-matplotlib-data_3.8.3-3_all.deb ... 105s Unpacking python-matplotlib-data (3.8.3-3) ... 105s Selecting previously unselected package python3.13. 105s Preparing to unpack .../100-python3.13_3.13.0-2_arm64.deb ... 105s Unpacking python3.13 (3.13.0-2) ... 105s Selecting previously unselected package python3-all. 105s Preparing to unpack .../101-python3-all_3.12.7-1_arm64.deb ... 105s Unpacking python3-all (3.12.7-1) ... 105s Selecting previously unselected package python3-appdirs. 105s Preparing to unpack .../102-python3-appdirs_1.4.4-4_all.deb ... 105s Unpacking python3-appdirs (1.4.4-4) ... 105s Selecting previously unselected package python3-brotli. 105s Preparing to unpack .../103-python3-brotli_1.1.0-2build2_arm64.deb ... 105s Unpacking python3-brotli (1.1.0-2build2) ... 105s Selecting previously unselected package python3-numpy. 105s 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python3-decorator (5.1.1-5) ... 106s Selecting previously unselected package python3-deeptoolsintervals. 106s Preparing to unpack .../110-python3-deeptoolsintervals_0.1.9-3build9_arm64.deb ... 106s Unpacking python3-deeptoolsintervals (0.1.9-3build9) ... 106s Selecting previously unselected package libopenjp2-7:arm64. 106s Preparing to unpack .../111-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 106s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 106s Selecting previously unselected package python3-pil:arm64. 106s Preparing to unpack .../112-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 106s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 106s Selecting previously unselected package python3.12-tk. 106s Preparing to unpack .../113-python3.12-tk_3.12.7-3_arm64.deb ... 106s Unpacking python3.12-tk (3.12.7-3) ... 106s Selecting previously unselected package python3.13-tk. 106s Preparing to unpack .../114-python3.13-tk_3.13.0-2_arm64.deb ... 106s Unpacking python3.13-tk (3.13.0-2) ... 106s 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(15.1.0+ds-1build1) ... 107s Selecting previously unselected package unicode-data. 107s Preparing to unpack .../126-unicode-data_15.1.0-1_all.deb ... 107s Unpacking unicode-data (15.1.0-1) ... 107s Selecting previously unselected package python3-fonttools. 107s Preparing to unpack .../127-python3-fonttools_4.46.0-1build2_arm64.deb ... 107s Unpacking python3-fonttools (4.46.0-1build2) ... 107s Selecting previously unselected package python3-kiwisolver. 107s Preparing to unpack .../128-python3-kiwisolver_1.4.7-2_arm64.deb ... 107s Unpacking python3-kiwisolver (1.4.7-2) ... 107s Selecting previously unselected package python3-matplotlib. 107s Preparing to unpack .../129-python3-matplotlib_3.8.3-3_arm64.deb ... 107s Unpacking python3-matplotlib (3.8.3-3) ... 108s Selecting previously unselected package python3-defusedxml. 108s Preparing to unpack .../130-python3-defusedxml_0.7.1-2_all.deb ... 108s Unpacking python3-defusedxml (0.7.1-2) ... 108s Selecting previously unselected package sphinx-common. 108s Preparing to unpack .../131-sphinx-common_7.4.7-4_all.deb ... 108s Unpacking sphinx-common (7.4.7-4) ... 108s Selecting previously unselected package python3-alabaster. 108s Preparing to unpack .../132-python3-alabaster_0.7.16-0.1_all.deb ... 108s Unpacking python3-alabaster (0.7.16-0.1) ... 108s Selecting previously unselected package python3-roman. 108s Preparing to unpack .../133-python3-roman_4.2-1_all.deb ... 108s Unpacking python3-roman (4.2-1) ... 108s Selecting previously unselected package python3-docutils. 108s Preparing to unpack .../134-python3-docutils_0.21.2+dfsg-2_all.deb ... 108s Unpacking python3-docutils (0.21.2+dfsg-2) ... 108s Selecting previously unselected package python3-imagesize. 108s Preparing to unpack .../135-python3-imagesize_1.4.1-1_all.deb ... 108s Unpacking python3-imagesize (1.4.1-1) ... 108s Selecting previously unselected package python3-snowballstemmer. 108s Preparing to unpack .../136-python3-snowballstemmer_2.2.0-4build1_all.deb 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previously unselected package python3-traitlets. 108s Preparing to unpack .../142-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 108s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 108s Selecting previously unselected package python3-jupyter-core. 108s Preparing to unpack .../143-python3-jupyter-core_5.7.2-4_all.deb ... 108s Unpacking python3-jupyter-core (5.7.2-4) ... 108s Selecting previously unselected package python3-nbformat. 108s Preparing to unpack .../144-python3-nbformat_5.9.1-1_all.deb ... 108s Unpacking python3-nbformat (5.9.1-1) ... 108s Selecting previously unselected package python3-tenacity. 108s Preparing to unpack .../145-python3-tenacity_8.5.0-0ubuntu1_all.deb ... 108s Unpacking python3-tenacity (8.5.0-0ubuntu1) ... 108s Selecting previously unselected package python3-plotly. 108s Preparing to unpack .../146-python3-plotly_5.20.0+dfsg-1_all.deb ... 108s Unpacking python3-plotly (5.20.0+dfsg-1) ... 110s Selecting previously unselected package python3-py2bit. 110s Preparing to unpack .../147-python3-py2bit_0.3.1-3_arm64.deb ... 110s Unpacking python3-py2bit (0.3.1-3) ... 110s Selecting previously unselected package python3-pybigwig. 110s Preparing to unpack .../148-python3-pybigwig_0.3.23+dfsg-1_arm64.deb ... 110s Unpacking python3-pybigwig (0.3.23+dfsg-1) ... 110s Selecting previously unselected package python3-pysam. 110s Preparing to unpack .../149-python3-pysam_0.22.1+ds-2_arm64.deb ... 110s Unpacking python3-pysam (0.22.1+ds-2) ... 110s Selecting previously unselected package python3-deeptools. 110s Preparing to unpack .../150-python3-deeptools_3.5.5+dfsg-1_all.deb ... 110s Unpacking python3-deeptools (3.5.5+dfsg-1) ... 110s Selecting previously unselected package python3-iniconfig. 110s Preparing to unpack .../151-python3-iniconfig_1.1.1-2_all.deb ... 110s Unpacking python3-iniconfig (1.1.1-2) ... 110s Selecting previously unselected package python3-pluggy. 110s Preparing to unpack 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python3-sphinx (7.4.7-4) ... 174s Setting up python3-numpydoc (1.6.0-2) ... 174s Setting up python3-deeptools (3.5.5+dfsg-1) ... 175s Setting up autopkgtest-satdep (0) ... 181s (Reading database ... 106011 files and directories currently installed.) 181s Removing autopkgtest-satdep (0) ... 182s autopkgtest [10:24:08]: test pybuild-autopkgtest: pybuild-autopkgtest 182s autopkgtest [10:24:08]: test pybuild-autopkgtest: [----------------------- 182s pybuild-autopkgtest 182s I: pybuild base:311: cd /tmp/autopkgtest.8Gw62Q/autopkgtest_tmp/build; python3.13 -m pytest -v /tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/ 183s ============================= test session starts ============================== 183s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 183s cachedir: .pytest_cache 183s rootdir: /tmp/autopkgtest.8Gw62Q/build.gbk/src 183s configfile: pyproject.toml 183s plugins: typeguard-4.4.1 183s collecting ... collected 1 item / 10 errors 183s 183s ==================================== ERRORS ==================================== 183s ______ ERROR collecting deeptools/test/test_bamCoverage_and_bamCompare.py ______ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py:1: in 183s import deeptools.bamCoverage as bam_cov 183s ../../build.gbk/src/deeptools/bamCoverage.py:7: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s ____________ ERROR collecting deeptools/test/test_bigwigAverage.py _____________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_bigwigAverage.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_bigwigAverage.py:1: in 183s import deeptools.bigwigAverage as bwAve 183s ../../build.gbk/src/deeptools/bigwigAverage.py:5: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s _ ERROR collecting deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py _ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py:1: in 183s import deeptools.bigwigCompare as bwComp 183s ../../build.gbk/src/deeptools/bigwigCompare.py:5: in 183s from deeptools.getRatio import getRatio 183s ../../build.gbk/src/deeptools/getRatio.py:1: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s _______ ERROR collecting deeptools/test/test_computeMatrixOperations.py ________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_computeMatrixOperations.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_computeMatrixOperations.py:3: in 183s import deeptools.computeMatrixOperations as cmo 183s ../../build.gbk/src/deeptools/computeMatrixOperations.py:2: in 183s import deeptools.heatmapper as heatmapper 183s ../../build.gbk/src/deeptools/heatmapper.py:4: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s ___________ ERROR collecting deeptools/test/test_countReadsPerBin.py ___________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_countReadsPerBin.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_countReadsPerBin.py:3: in 183s import deeptools.countReadsPerBin as cr 183s ../../build.gbk/src/deeptools/countReadsPerBin.py:6: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s ______________ ERROR collecting deeptools/test/test_heatmapper.py ______________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_heatmapper.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_heatmapper.py:4: in 183s import deeptools.computeMatrix 183s ../../build.gbk/src/deeptools/computeMatrix.py:8: in 183s from deeptools import heatmapper 183s ../../build.gbk/src/deeptools/heatmapper.py:4: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s ___________ ERROR collecting deeptools/test/test_multiBamSummary.py ____________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_multiBamSummary.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_multiBamSummary.py:1: in 183s import deeptools.multiBamSummary as mbs 183s ../../build.gbk/src/deeptools/multiBamSummary.py:7: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s _____________ ERROR collecting deeptools/test/test_plotCoverage.py _____________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_plotCoverage.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_plotCoverage.py:3: in 183s from matplotlib.testing.compare import compare_images 183s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 183s import numpy 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s ____________ ERROR collecting deeptools/test/test_readFiltering.py _____________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_readFiltering.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_readFiltering.py:1: in 183s import deeptools.estimateReadFiltering as est 183s ../../build.gbk/src/deeptools/estimateReadFiltering.py:5: in 183s from deeptools import parserCommon, bamHandler, utilities 183s ../../build.gbk/src/deeptools/bamHandler.py:2: in 183s import pysam 183s /usr/lib/python3/dist-packages/pysam/__init__.py:4: in 183s from pysam.libchtslib import * 183s E ModuleNotFoundError: No module named 'pysam.libchtslib' 183s ____________ ERROR collecting deeptools/test/test_writeBedGraph.py _____________ 183s ImportError while importing test module '/tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/test/test_writeBedGraph.py'. 183s Hint: make sure your test modules/packages have valid Python names. 183s Traceback: 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 183s from . import multiarray 183s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 183s from . import overrides 183s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 183s from numpy.core._multiarray_umath import ( 183s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 183s 183s During handling of the above exception, another exception occurred: 183s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 183s from numpy.__config__ import show as show_config 183s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 183s from numpy.core._multiarray_umath import ( 183s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 183s raise ImportError(msg) 183s E ImportError: 183s E 183s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 183s E 183s E Importing the numpy C-extensions failed. This error can happen for 183s E many reasons, often due to issues with your setup or how NumPy was 183s E installed. 183s E 183s E We have compiled some common reasons and troubleshooting tips at: 183s E 183s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 183s E 183s E Please note and check the following: 183s E 183s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 183s E * The NumPy version is: "1.26.4" 183s E 183s E and make sure that they are the versions you expect. 183s E Please carefully study the documentation linked above for further help. 183s E 183s E Original error was: No module named 'numpy.core._multiarray_umath' 183s 183s The above exception was the direct cause of the following exception: 183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 183s return _bootstrap._gcd_import(name[level:], package, level) 183s ../../build.gbk/src/deeptools/test/test_writeBedGraph.py:3: in 183s import deeptools.writeBedGraph as wr 183s ../../build.gbk/src/deeptools/writeBedGraph.py:4: in 183s import numpy as np 183s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 183s raise ImportError(msg) from e 183s E ImportError: Error importing numpy: you should not try to import numpy from 183s E its source directory; please exit the numpy source tree, and relaunch 183s E your python interpreter from there. 183s =========================== short test summary info ============================ 183s ERROR ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py 183s ERROR ../../build.gbk/src/deeptools/test/test_bigwigAverage.py 183s ERROR ../../build.gbk/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py 183s ERROR ../../build.gbk/src/deeptools/test/test_computeMatrixOperations.py 183s ERROR ../../build.gbk/src/deeptools/test/test_countReadsPerBin.py 183s ERROR ../../build.gbk/src/deeptools/test/test_heatmapper.py 183s ERROR ../../build.gbk/src/deeptools/test/test_multiBamSummary.py 183s ERROR ../../build.gbk/src/deeptools/test/test_plotCoverage.py 183s ERROR ../../build.gbk/src/deeptools/test/test_readFiltering.py 183s ERROR ../../build.gbk/src/deeptools/test/test_writeBedGraph.py 183s !!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!! 183s ============================== 10 errors in 0.68s ============================== 184s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.8Gw62Q/autopkgtest_tmp/build; python3.13 -m pytest -v /tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/ 184s I: pybuild base:311: cd /tmp/autopkgtest.8Gw62Q/autopkgtest_tmp/build; python3.12 -m pytest -v /tmp/autopkgtest.8Gw62Q/build.gbk/src/deeptools/ 184s ============================= test session starts ============================== 184s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 184s cachedir: .pytest_cache 184s rootdir: /tmp/autopkgtest.8Gw62Q/build.gbk/src 184s configfile: pyproject.toml 184s plugins: typeguard-4.4.1 185s collecting ... collected 100 items 185s 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_coverage_arguments PASSED [ 1%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_coverage_extend PASSED [ 2%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_coverage_extend_and_normalizeUsingRPGC PASSED [ 3%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_coverage_skipnas PASSED [ 4%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_coverage_filtering PASSED [ 5%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_compare_arguments PASSED [ 6%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_compare_diff_files PASSED [ 7%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_compare_pseudocounts PASSED [ 8%] 185s ../../build.gbk/src/deeptools/test/test_bamCoverage_and_bamCompare.py::test_bam_compare_ZoverZ PASSED [ 9%] 185s 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adt-plucky-arm64-python-deeptools-20241113-102106-juju-7f2275-prod-proposed-migration-environment-2-e5083e6e-8fe4-4ddf-879a-a7ac9d94dccb from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...