0s autopkgtest [18:01:17]: starting date and time: 2025-01-03 18:01:17+0000 0s autopkgtest [18:01:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:01:17]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ren67lrg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-cooler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-34.secgroup --name adt-plucky-arm64-python-cooler-20250103-180116-juju-7f2275-prod-proposed-migration-environment-15-99432b97-e97e-4331-825f-433d5974ab18 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 129s autopkgtest [18:03:26]: testbed dpkg architecture: arm64 129s autopkgtest [18:03:26]: testbed apt version: 2.9.18 130s autopkgtest [18:03:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 130s autopkgtest [18:03:26]: testbed release detected to be: None 130s autopkgtest [18:03:27]: updating testbed package index (apt update) 130s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 131s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 131s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 131s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [780 kB] 131s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [99.9 kB] 131s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB] 131s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [821 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [12.2 kB] 131s Fetched 1939 kB in 1s (2169 kB/s) 132s Reading package lists... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade... 134s The following packages will be upgraded: 134s base-passwd bash-completion binutils binutils-aarch64-linux-gnu 134s binutils-common libbinutils libctf-nobfd0 libctf0 libgprofng0 libsframe1 134s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 5715 kB of archives. 134s After this operation, 143 kB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 base-passwd arm64 3.6.6 [53.6 kB] 134s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 bash-completion all 1:2.16.0-1 [214 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgprofng0 arm64 2.43.50.20241230-1ubuntu1 [781 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf0 arm64 2.43.50.20241230-1ubuntu1 [99.0 kB] 135s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf-nobfd0 arm64 2.43.50.20241230-1ubuntu1 [102 kB] 135s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-aarch64-linux-gnu arm64 2.43.50.20241230-1ubuntu1 [3421 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libbinutils arm64 2.43.50.20241230-1ubuntu1 [782 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils arm64 2.43.50.20241230-1ubuntu1 [3254 B] 135s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-common arm64 2.43.50.20241230-1ubuntu1 [245 kB] 135s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsframe1 arm64 2.43.50.20241230-1ubuntu1 [14.3 kB] 135s Preconfiguring packages ... 135s Fetched 5715 kB in 1s (7466 kB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 135s Preparing to unpack .../base-passwd_3.6.6_arm64.deb ... 135s Unpacking base-passwd (3.6.6) over (3.6.5) ... 136s Setting up base-passwd (3.6.6) ... 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 136s Preparing to unpack .../0-bash-completion_1%3a2.16.0-1_all.deb ... 136s Unpacking bash-completion (1:2.16.0-1) over (1:2.14.0-2) ... 136s Preparing to unpack .../1-libgprofng0_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../2-libctf0_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking libctf0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../3-libctf-nobfd0_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../4-binutils-aarch64-linux-gnu_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../5-libbinutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking libbinutils:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../6-binutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../7-binutils-common_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking binutils-common:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Preparing to unpack .../8-libsframe1_2.43.50.20241230-1ubuntu1_arm64.deb ... 136s Unpacking libsframe1:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 136s Setting up binutils-common:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up libsframe1:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up bash-completion (1:2.16.0-1) ... 136s Setting up libbinutils:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up libctf0:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) ... 136s Setting up binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) ... 136s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 136s Processing triggers for libc-bin (2.40-4ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 139s autopkgtest [18:03:36]: upgrading testbed (apt dist-upgrade and autopurge) 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 141s Entering ResolveByKeep 141s 141s The following packages were automatically installed and are no longer required: 141s python3.12 python3.12-minimal 141s Use 'sudo apt autoremove' to remove them. 141s The following NEW packages will be installed: 141s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 141s The following packages will be upgraded: 141s libpython3-stdlib python3 python3-minimal 141s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 5992 kB of archives. 141s After this operation, 24.3 MB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.1-2 [879 kB] 142s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.1-2 [2262 kB] 142s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.13.1-1~exp2 [27.6 kB] 142s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.13.1-1~exp2 [23.9 kB] 142s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.1-2 [2061 kB] 142s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.1-2 [729 kB] 142s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.13.1-1~exp2 [10.2 kB] 143s Fetched 5992 kB in 1s (6946 kB/s) 143s Selecting previously unselected package libpython3.13-minimal:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80185 files and directories currently installed.) 143s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_arm64.deb ... 143s Unpacking libpython3.13-minimal:arm64 (3.13.1-2) ... 143s Selecting previously unselected package python3.13-minimal. 143s Preparing to unpack .../python3.13-minimal_3.13.1-2_arm64.deb ... 143s Unpacking python3.13-minimal (3.13.1-2) ... 143s Setting up libpython3.13-minimal:arm64 (3.13.1-2) ... 143s Setting up python3.13-minimal (3.13.1-2) ... 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 144s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_arm64.deb ... 144s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 144s Setting up python3-minimal (3.13.1-1~exp2) ... 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 144s Preparing to unpack .../python3_3.13.1-1~exp2_arm64.deb ... 144s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 144s Selecting previously unselected package libpython3.13-stdlib:arm64. 144s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_arm64.deb ... 144s Unpacking libpython3.13-stdlib:arm64 (3.13.1-2) ... 144s Selecting previously unselected package python3.13. 144s Preparing to unpack .../python3.13_3.13.1-2_arm64.deb ... 144s Unpacking python3.13 (3.13.1-2) ... 144s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_arm64.deb ... 144s Unpacking libpython3-stdlib:arm64 (3.13.1-1~exp2) over (3.12.8-1) ... 144s Setting up libpython3.13-stdlib:arm64 (3.13.1-2) ... 144s Setting up libpython3-stdlib:arm64 (3.13.1-1~exp2) ... 144s Setting up python3.13 (3.13.1-2) ... 145s Setting up python3 (3.13.1-1~exp2) ... 145s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 145s for fn in glob1(directory, "%s.*" % fname): 146s Processing triggers for man-db (2.13.0-1) ... 146s Processing triggers for systemd (257-2ubuntu1) ... 146s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 148s The following packages will be REMOVED: 148s python3.12* python3.12-minimal* 148s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 148s After this operation, 8710 kB disk space will be freed. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80922 files and directories currently installed.) 148s Removing python3.12 (3.12.8-3) ... 148s Removing python3.12-minimal (3.12.8-3) ... 148s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 148s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 149s Processing triggers for man-db (2.13.0-1) ... 149s Processing triggers for systemd (257-2ubuntu1) ... 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 149s Purging configuration files for python3.12-minimal (3.12.8-3) ... 152s autopkgtest [18:03:49]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 152s autopkgtest [18:03:49]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cooler 155s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-cooler 0.10.2-1 (dsc) [2846 B] 155s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-cooler 0.10.2-1 (tar) [11.4 MB] 155s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-cooler 0.10.2-1 (diff) [7488 B] 155s gpgv: Signature made Fri Aug 30 22:41:04 2024 UTC 155s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 155s gpgv: issuer "tchet@debian.org" 155s gpgv: Can't check signature: No public key 155s dpkg-source: warning: cannot verify inline signature for ./python-cooler_0.10.2-1.dsc: no acceptable signature found 155s autopkgtest [18:03:52]: testing package python-cooler version 0.10.2-1 156s autopkgtest [18:03:53]: build not needed 159s autopkgtest [18:03:56]: test run-unit-test: preparing testbed 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 161s The following NEW packages will be installed: 161s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 161s libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 161s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 161s libhdf5-hl-100t64 libhts3t64 libhtscodecs2 libimagequant0 libjbig0 161s libjpeg-turbo8 libjpeg8 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 161s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libsz2 libtiff6 libwebp7 161s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 161s python3-asciitree python3-biopython python3-cairo python3-click 161s python3-cloudpickle python3-colorama python3-cooler python3-cooler-examples 161s python3-cytoolz python3-dask python3-dateutil python3-decorator python3-dill 161s python3-freetype python3-fsspec python3-h5py python3-h5py-serial 161s python3-importlib-metadata python3-iniconfig python3-locket python3-mock 161s python3-multiprocess python3-numpy python3-packaging python3-pairix 161s python3-pandas python3-pandas-lib python3-partd python3-pil python3-pluggy 161s python3-pyfaidx python3-pysam python3-pytest python3-reportlab 161s python3-rlpycairo python3-scipy python3-simplejson python3-toolz python3-tz 161s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 161s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 75.5 MB of archives. 161s After this operation, 349 MB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 161s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 161s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 162s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 162s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 162s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 162s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 162s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 162s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 162s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 162s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 162s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 162s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 162s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-12ubuntu1 [437 kB] 162s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-12ubuntu1 [145 kB] 162s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 162s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.1.0-1 [489 kB] 162s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 162s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-5ubuntu1 [1210 kB] 162s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-5ubuntu1 [56.9 kB] 162s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB] 162s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.20+ds-2 [437 kB] 162s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 162s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 162s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 162s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 162s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 162s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 162s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 162s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 162s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 162s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 162s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 162s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 162s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 162s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 162s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 162s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asciitree all 0.3.3-4 [5644 B] 162s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [4153 kB] 162s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu2 [182 kB] 162s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu2 [473 kB] 162s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2build1 [139 kB] 162s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 162s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 162s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 162s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 162s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 162s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4build1 [1694 kB] 162s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 162s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-importlib-metadata all 8.5.0-1 [20.7 kB] 162s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 162s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cloudpickle all 3.1.0-1 [22.4 kB] 162s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toolz all 1.0.0-2 [45.0 kB] 162s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cytoolz arm64 1.0.1-1 [402 kB] 162s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu3 [1452 kB] 162s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-8ubuntu3 [7982 B] 162s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dill all 0.3.9-1 [84.5 kB] 162s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-multiprocess all 0.70.17-1 [108 kB] 162s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 162s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.2-1 [31.5 kB] 162s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5ubuntu1 [6921 kB] 163s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 163s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 163s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 163s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 163s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-3ubuntu1 [19.5 MB] 163s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-simplejson arm64 3.19.3-1build1 [54.3 kB] 163s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.22.1+ds-2build1 [3987 kB] 163s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pairix arm64 0.3.8-1build1 [45.5 kB] 163s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cooler arm64 0.10.2-1 [82.0 kB] 163s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cooler-examples all 0.10.2-1 [9234 kB] 163s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fsspec all 2024.10.0-1 [207 kB] 163s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-locket all 1.0.0-2 [5872 B] 163s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-partd all 1.4.2-1 [15.7 kB] 163s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dask all 2024.5.2+dfsg-1 [849 kB] 164s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 164s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 164s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 164s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mock all 5.1.0-1 [64.1 kB] 164s Fetched 75.5 MB in 3s (27.2 MB/s) 164s Selecting previously unselected package sgml-base. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 164s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 164s Unpacking sgml-base (1.31) ... 164s Selecting previously unselected package fonts-dejavu-mono. 164s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8) ... 164s Selecting previously unselected package libfontenc1:arm64. 164s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 164s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 164s Selecting previously unselected package x11-common. 164s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 164s Unpacking x11-common (1:7.7+23ubuntu3) ... 164s Selecting previously unselected package xfonts-encodings. 164s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 164s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 164s Selecting previously unselected package xfonts-utils. 164s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_arm64.deb ... 164s Unpacking xfonts-utils (1:7.7+7) ... 164s Selecting previously unselected package fonts-urw-base35. 164s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 164s Unpacking fonts-urw-base35 (20200910-8) ... 165s Selecting previously unselected package fontconfig-config. 165s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 165s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 165s Selecting previously unselected package libaec0:arm64. 165s Preparing to unpack .../09-libaec0_1.1.3-1_arm64.deb ... 165s Unpacking libaec0:arm64 (1.1.3-1) ... 165s Selecting previously unselected package libblas3:arm64. 165s Preparing to unpack .../10-libblas3_3.12.0-4_arm64.deb ... 165s Unpacking libblas3:arm64 (3.12.0-4) ... 165s Selecting previously unselected package libfontconfig1:arm64. 165s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 165s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 165s Selecting previously unselected package libpixman-1-0:arm64. 165s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_arm64.deb ... 165s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 165s Selecting previously unselected package libxcb-render0:arm64. 165s Preparing to unpack .../13-libxcb-render0_1.17.0-2_arm64.deb ... 165s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 165s Selecting previously unselected package libxcb-shm0:arm64. 165s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_arm64.deb ... 165s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 165s Selecting previously unselected package libxrender1:arm64. 165s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 165s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 165s Selecting previously unselected package libcairo2:arm64. 165s Preparing to unpack .../16-libcairo2_1.18.2-2_arm64.deb ... 165s Unpacking libcairo2:arm64 (1.18.2-2) ... 165s Selecting previously unselected package libdeflate0:arm64. 165s Preparing to unpack .../17-libdeflate0_1.22-1_arm64.deb ... 165s Unpacking libdeflate0:arm64 (1.22-1) ... 165s Selecting previously unselected package libgfortran5:arm64. 165s Preparing to unpack .../18-libgfortran5_14.2.0-12ubuntu1_arm64.deb ... 165s Unpacking libgfortran5:arm64 (14.2.0-12ubuntu1) ... 165s Selecting previously unselected package libgomp1:arm64. 165s Preparing to unpack .../19-libgomp1_14.2.0-12ubuntu1_arm64.deb ... 165s Unpacking libgomp1:arm64 (14.2.0-12ubuntu1) ... 165s Selecting previously unselected package libgraphite2-3:arm64. 165s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 165s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 165s Selecting previously unselected package libharfbuzz0b:arm64. 165s Preparing to unpack .../21-libharfbuzz0b_10.1.0-1_arm64.deb ... 165s Unpacking libharfbuzz0b:arm64 (10.1.0-1) ... 165s Selecting previously unselected package libsz2:arm64. 165s Preparing to unpack .../22-libsz2_1.1.3-1_arm64.deb ... 165s Unpacking libsz2:arm64 (1.1.3-1) ... 165s Selecting previously unselected package libhdf5-103-1t64:arm64. 165s Preparing to unpack .../23-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_arm64.deb ... 165s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 165s Selecting previously unselected package libhdf5-hl-100t64:arm64. 165s Preparing to unpack .../24-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_arm64.deb ... 165s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 165s Selecting previously unselected package libhtscodecs2:arm64. 165s Preparing to unpack .../25-libhtscodecs2_1.6.1-1_arm64.deb ... 165s Unpacking libhtscodecs2:arm64 (1.6.1-1) ... 165s Selecting previously unselected package libhts3t64:arm64. 165s Preparing to unpack .../26-libhts3t64_1.20+ds-2_arm64.deb ... 165s Unpacking libhts3t64:arm64 (1.20+ds-2) ... 166s Selecting previously unselected package libimagequant0:arm64. 166s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_arm64.deb ... 166s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 166s Selecting previously unselected package libjpeg-turbo8:arm64. 166s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 166s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 166s Selecting previously unselected package libjpeg8:arm64. 166s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package liblapack3:arm64. 166s Preparing to unpack .../30-liblapack3_3.12.0-4_arm64.deb ... 166s Unpacking liblapack3:arm64 (3.12.0-4) ... 166s Selecting previously unselected package liblbfgsb0:arm64. 166s Preparing to unpack .../31-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 166s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 166s Selecting previously unselected package liblcms2-2:arm64. 166s Preparing to unpack .../32-liblcms2-2_2.16-2_arm64.deb ... 166s Unpacking liblcms2-2:arm64 (2.16-2) ... 166s Selecting previously unselected package liblerc4:arm64. 166s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 166s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 166s Selecting previously unselected package liblzf1:arm64. 166s Preparing to unpack .../34-liblzf1_3.6-4_arm64.deb ... 166s Unpacking liblzf1:arm64 (3.6-4) ... 166s Selecting previously unselected package libraqm0:arm64. 166s Preparing to unpack .../35-libraqm0_0.10.2-1_arm64.deb ... 166s Unpacking libraqm0:arm64 (0.10.2-1) ... 166s Selecting previously unselected package libsharpyuv0:arm64. 166s Preparing to unpack .../36-libsharpyuv0_1.4.0-0.1_arm64.deb ... 166s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 166s Selecting previously unselected package libjbig0:arm64. 166s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 166s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 166s Selecting previously unselected package libwebp7:arm64. 166s Preparing to unpack .../38-libwebp7_1.4.0-0.1_arm64.deb ... 166s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 166s Selecting previously unselected package libtiff6:arm64. 166s Preparing to unpack .../39-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 166s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 166s Selecting previously unselected package libwebpdemux2:arm64. 166s Preparing to unpack .../40-libwebpdemux2_1.4.0-0.1_arm64.deb ... 166s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 166s Selecting previously unselected package libwebpmux3:arm64. 166s Preparing to unpack .../41-libwebpmux3_1.4.0-0.1_arm64.deb ... 166s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 166s Selecting previously unselected package python3-asciitree. 166s Preparing to unpack .../42-python3-asciitree_0.3.3-4_all.deb ... 166s Unpacking python3-asciitree (0.3.3-4) ... 166s Selecting previously unselected package python3-numpy. 166s Preparing to unpack .../43-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... 166s Unpacking python3-numpy (1:1.26.4+ds-12) ... 166s Selecting previously unselected package libopenjp2-7:arm64. 166s Preparing to unpack .../44-libopenjp2-7_2.5.0-2ubuntu2_arm64.deb ... 166s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu2) ... 166s Selecting previously unselected package python3-pil:arm64. 166s Preparing to unpack .../45-python3-pil_10.4.0-1ubuntu2_arm64.deb ... 166s Unpacking python3-pil:arm64 (10.4.0-1ubuntu2) ... 166s Selecting previously unselected package python3-cairo. 166s Preparing to unpack .../46-python3-cairo_1.26.1-2build1_arm64.deb ... 166s Unpacking python3-cairo (1.26.1-2build1) ... 166s Selecting previously unselected package python3-freetype. 167s Preparing to unpack .../47-python3-freetype_2.5.1-1_all.deb ... 167s Unpacking python3-freetype (2.5.1-1) ... 167s Selecting previously unselected package python3-rlpycairo. 167s Preparing to unpack .../48-python3-rlpycairo_0.3.0-3_all.deb ... 167s Unpacking python3-rlpycairo (0.3.0-3) ... 167s Selecting previously unselected package python3-reportlab. 167s Preparing to unpack .../49-python3-reportlab_4.2.5-1_all.deb ... 167s Unpacking python3-reportlab (4.2.5-1) ... 167s Selecting previously unselected package xml-core. 167s Preparing to unpack .../50-xml-core_0.19_all.deb ... 167s Unpacking xml-core (0.19) ... 167s Selecting previously unselected package w3c-sgml-lib. 167s Preparing to unpack .../51-w3c-sgml-lib_1.3-3_all.deb ... 167s Unpacking w3c-sgml-lib (1.3-3) ... 167s Selecting previously unselected package python3-biopython. 167s Preparing to unpack .../52-python3-biopython_1.84+dfsg-4build1_arm64.deb ... 167s Unpacking python3-biopython (1.84+dfsg-4build1) ... 167s Selecting previously unselected package python3-colorama. 167s Preparing to unpack .../53-python3-colorama_0.4.6-4_all.deb ... 167s Unpacking python3-colorama (0.4.6-4) ... 167s Selecting previously unselected package python3-importlib-metadata. 167s Preparing to unpack .../54-python3-importlib-metadata_8.5.0-1_all.deb ... 167s Unpacking python3-importlib-metadata (8.5.0-1) ... 167s Selecting previously unselected package python3-click. 167s Preparing to unpack .../55-python3-click_8.1.7-2_all.deb ... 167s Unpacking python3-click (8.1.7-2) ... 167s Selecting previously unselected package python3-cloudpickle. 167s Preparing to unpack .../56-python3-cloudpickle_3.1.0-1_all.deb ... 167s Unpacking python3-cloudpickle (3.1.0-1) ... 167s Selecting previously unselected package python3-toolz. 167s Preparing to unpack .../57-python3-toolz_1.0.0-2_all.deb ... 167s Unpacking python3-toolz (1.0.0-2) ... 167s Selecting previously unselected package python3-cytoolz. 167s Preparing to unpack .../58-python3-cytoolz_1.0.1-1_arm64.deb ... 167s Unpacking python3-cytoolz (1.0.1-1) ... 167s Selecting previously unselected package python3-h5py-serial. 167s Preparing to unpack .../59-python3-h5py-serial_3.11.0-8ubuntu3_arm64.deb ... 167s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 167s Selecting previously unselected package python3-h5py. 167s Preparing to unpack .../60-python3-h5py_3.11.0-8ubuntu3_all.deb ... 167s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 167s Selecting previously unselected package python3-dill. 167s Preparing to unpack .../61-python3-dill_0.3.9-1_all.deb ... 167s Unpacking python3-dill (0.3.9-1) ... 167s Selecting previously unselected package python3-multiprocess. 167s Preparing to unpack .../62-python3-multiprocess_0.70.17-1_all.deb ... 167s Unpacking python3-multiprocess (0.70.17-1) ... 167s Selecting previously unselected package python3-dateutil. 167s Preparing to unpack .../63-python3-dateutil_2.9.0-3_all.deb ... 167s Unpacking python3-dateutil (2.9.0-3) ... 167s Selecting previously unselected package python3-tz. 167s Preparing to unpack .../64-python3-tz_2024.2-1_all.deb ... 167s Unpacking python3-tz (2024.2-1) ... 167s Selecting previously unselected package python3-pandas-lib:arm64. 167s Preparing to unpack .../65-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_arm64.deb ... 167s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 168s Selecting previously unselected package python3-pandas. 168s Preparing to unpack .../66-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 168s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 168s Selecting previously unselected package python3-packaging. 168s Preparing to unpack .../67-python3-packaging_24.2-1_all.deb ... 168s Unpacking python3-packaging (24.2-1) ... 168s Selecting previously unselected package python3-pyfaidx. 168s Preparing to unpack .../68-python3-pyfaidx_0.8.1.3-1_all.deb ... 168s Unpacking python3-pyfaidx (0.8.1.3-1) ... 168s Selecting previously unselected package python3-decorator. 168s Preparing to unpack .../69-python3-decorator_5.1.1-5_all.deb ... 168s Unpacking python3-decorator (5.1.1-5) ... 168s Selecting previously unselected package python3-scipy. 168s Preparing to unpack .../70-python3-scipy_1.14.1-3ubuntu1_arm64.deb ... 168s Unpacking python3-scipy (1.14.1-3ubuntu1) ... 169s Selecting previously unselected package python3-simplejson. 169s Preparing to unpack .../71-python3-simplejson_3.19.3-1build1_arm64.deb ... 169s Unpacking python3-simplejson (3.19.3-1build1) ... 169s Selecting previously unselected package python3-pysam. 169s Preparing to unpack .../72-python3-pysam_0.22.1+ds-2build1_arm64.deb ... 169s Unpacking python3-pysam (0.22.1+ds-2build1) ... 169s Selecting previously unselected package python3-pairix:arm64. 169s Preparing to unpack .../73-python3-pairix_0.3.8-1build1_arm64.deb ... 169s Unpacking python3-pairix:arm64 (0.3.8-1build1) ... 169s Selecting previously unselected package python3-cooler. 169s Preparing to unpack .../74-python3-cooler_0.10.2-1_arm64.deb ... 169s Unpacking python3-cooler (0.10.2-1) ... 169s Selecting previously unselected package python3-cooler-examples. 169s Preparing to unpack .../75-python3-cooler-examples_0.10.2-1_all.deb ... 169s Unpacking python3-cooler-examples (0.10.2-1) ... 169s Selecting previously unselected package python3-fsspec. 169s Preparing to unpack .../76-python3-fsspec_2024.10.0-1_all.deb ... 169s Unpacking python3-fsspec (2024.10.0-1) ... 169s Selecting previously unselected package python3-locket. 169s Preparing to unpack .../77-python3-locket_1.0.0-2_all.deb ... 169s 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(2.37-8) ... 172s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 172s Setting up python3-asciitree (0.3.3-4) ... 172s Setting up libgfortran5:arm64 (14.2.0-12ubuntu1) ... 172s Setting up python3-pluggy (1.5.0-1) ... 172s Setting up python3-cooler-examples (0.10.2-1) ... 172s Setting up libwebp7:arm64 (1.4.0-0.1) ... 172s Setting up libhts3t64:arm64 (1.20+ds-2) ... 172s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu2) ... 172s Setting up python3-toolz (1.0.0-2) ... 172s Setting up libharfbuzz0b:arm64 (10.1.0-1) ... 172s Setting up python3-dateutil (2.9.0-3) ... 173s Setting up sgml-base (1.31) ... 173s Setting up python3-multiprocess (0.70.17-1) ... 173s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 173s Setting up python3-locket (1.0.0-2) ... 173s Setting up libsz2:arm64 (1.1.3-1) ... 173s Setting up python3-cytoolz (1.0.1-1) ... 173s /usr/lib/python3/dist-packages/cytoolz/tests/test_inspect_args.py:505: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? 173s assert num_required_args(Wrapped) is 1 173s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 173s Setting up python3-partd (1.4.2-1) ... 173s Setting up python3-pyfaidx (0.8.1.3-1) ... 174s Setting up liblapack3:arm64 (3.12.0-4) ... 174s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 174s Setting up python3-pysam (0.22.1+ds-2build1) ... 174s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 174s Setting up python3-pytest (8.3.3-1) ... 174s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 174s Setting up python3-dask (2024.5.2+dfsg-1) ... 176s Setting up xfonts-utils (1:7.7+7) ... 176s Setting up libraqm0:arm64 (0.10.2-1) ... 176s Setting up python3-numpy (1:1.26.4+ds-12) ... 177s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 177s Setting up xml-core (0.19) ... 178s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 178s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 178s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 178s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 178s Setting up python3-scipy (1.14.1-3ubuntu1) ... 181s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 181s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 181s Setting up fonts-urw-base35 (20200910-8) ... 182s Setting up libcairo2:arm64 (1.18.2-2) ... 182s Setting up python3-pil:arm64 (10.4.0-1ubuntu2) ... 182s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ... 187s Setting up python3-h5py (3.11.0-8ubuntu3) ... 187s Setting up python3-cairo (1.26.1-2build1) ... 187s Setting up python3-rlpycairo (0.3.0-3) ... 187s Setting up python3-reportlab (4.2.5-1) ... 188s Processing triggers for libc-bin (2.40-4ubuntu1) ... 188s Processing triggers for man-db (2.13.0-1) ... 188s Processing triggers for sgml-base (1.31) ... 189s Setting up w3c-sgml-lib (1.3-3) ... 215s Setting up python3-biopython (1.84+dfsg-4build1) ... 216s Setting up python3-cooler (0.10.2-1) ... 218s autopkgtest [18:04:55]: test run-unit-test: [----------------------- 218s + cp -a /usr/share/doc/python3-cooler/tests.tar.xz /tmp/autopkgtest.RqpJml/autopkgtest_tmp 218s + cd /tmp/autopkgtest.RqpJml/autopkgtest_tmp 218s + tar xaf tests.tar.xz 218s + pytest-3 220s ============================= test session starts ============================== 220s platform linux -- Python 3.13.1, pytest-8.3.3, pluggy-1.5.0 220s rootdir: /tmp/autopkgtest.RqpJml/autopkgtest_tmp 220s plugins: typeguard-4.4.1 220s collected 140 items 220s 220s tests/test_api.py ........... [ 7%] 221s tests/test_balance.py .... [ 10%] 222s tests/test_cli.py .s..s..... [ 17%] 222s tests/test_cli_export.py ..s [ 20%] 222s tests/test_cli_fileops.py .... [ 22%] 226s tests/test_cli_ingest.py ........... [ 30%] 229s tests/test_cli_ops.py .... [ 33%] 229s tests/test_core.py ........... [ 41%] 232s tests/test_create.py .s....... [ 47%] 253s tests/test_create_ingest.py .................. [ 60%] 253s tests/test_create_sanitize.py ........ [ 66%] 253s tests/test_fileops.py ........s.. [ 74%] 253s tests/test_parallel.py ... [ 76%] 257s tests/test_reduce.py .......... [ 83%] 258s tests/test_util.py .........s............. [100%] 258s 258s =============================== warnings summary =============================== 258s tests/test_balance.py::test_balancing_other_options[/tmp/autopkgtest.RqpJml/autopkgtest_tmp/tests/data/toy.symm.upper.2.cool-0.01] 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s /usr/lib/python3/dist-packages/cooler/balance.py:117: RuntimeWarning: Mean of empty slice. 258s scale = nzmarg.mean() 258s 258s tests/test_balance.py::test_balancing_other_options[/tmp/autopkgtest.RqpJml/autopkgtest_tmp/tests/data/toy.symm.upper.2.cool-0.01] 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s tests/test_cli_ops.py::test_zoomify 258s /usr/lib/python3/dist-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in scalar divide 258s ret = ret.dtype.type(ret / rcount) 258s 258s tests/test_cli_export.py::test_dump 258s /usr/lib/python3/dist-packages/dask/dataframe/__init__.py:31: FutureWarning: 258s Dask dataframe query planning is disabled because dask-expr is not installed. 258s 258s You can install it with `pip install dask[dataframe]` or `conda install dask`. 258s This will raise in a future version. 258s 258s warnings.warn(msg, FutureWarning) 258s 258s tests/test_cli_export.py: 1 warning 258s tests/test_create.py: 1 warning 258s tests/test_reduce.py: 15 warnings 258s /usr/lib/python3/dist-packages/cooler/create/_create.py:594: UserWarning: Creating a non-symmetric matrix, but `triucheck` was set to True. Changing to False. 258s warnings.warn( 258s 258s tests/test_cli_ops.py::test_zoomify 258s /usr/lib/python3/dist-packages/cooler/cli/zoomify.py:198: UserWarning: Map is already < 256 x 256. Provide resolutions explicitly if you want to coarsen more. 258s warnings.warn( 258s 258s tests/test_cli_ops.py::test_balance 258s tests/test_cli_ops.py::test_balance 258s tests/test_cli_ops.py::test_balance 258s /usr/lib/python3/dist-packages/cooler/balance.py:113: ConvergenceWarning: Iteration limit reached without convergence. 258s warnings.warn( 258s 258s tests/test_create_ingest.py: 8 warnings 258s tests/test_reduce.py: 6 warnings 258s /usr/lib/python3/dist-packages/multiprocess/popen_fork.py:66: DeprecationWarning: This process (pid=4849) is multi-threaded, use of fork() may lead to deadlocks in the child. 258s self.pid = os.fork() 258s 258s tests/test_reduce.py::test_merge2 258s /usr/lib/python3/dist-packages/cooler/reduce.py:126: UserWarning: 16 merge epochs will require buffering more than 3 pixel records, with as many as 6. 258s warnings.warn( 258s 258s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 258s ================= 134 passed, 6 skipped, 53 warnings in 38.98s ================= 258s autopkgtest [18:05:35]: test run-unit-test: -----------------------] 259s run-unit-test PASS 259s autopkgtest [18:05:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 259s autopkgtest [18:05:36]: @@@@@@@@@@@@@@@@@@@@ summary 259s run-unit-test PASS 278s nova [W] Using flock in prodstack6-arm64 278s flock: timeout while waiting to get lock 278s Creating nova instance adt-plucky-arm64-python-cooler-20250103-180116-juju-7f2275-prod-proposed-migration-environment-15-99432b97-e97e-4331-825f-433d5974ab18 from image adt/ubuntu-plucky-arm64-server-20250102.img (UUID 4cb073f4-4206-4362-b576-2406cb25ddd8)... 278s nova [W] Timed out waiting for 664114df-f126-4ca4-830a-a0fdc7c6b646 to get deleted.