0s autopkgtest [16:29:11]: starting date and time: 2024-11-14 16:29:11+0000
  0s autopkgtest [16:29:11]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:29:11]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6bx95h1v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-bx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-38.secgroup --name adt-plucky-arm64-python-bx-20241114-162911-juju-7f2275-prod-proposed-migration-environment-15-dc925a64-6049-4e66-aaec-df781b75c285 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 74s autopkgtest [16:30:25]: testbed dpkg architecture: arm64
 75s autopkgtest [16:30:26]: testbed apt version: 2.9.8
 75s autopkgtest [16:30:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB]
 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [951 kB]
 76s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [136 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [711 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [5488 B]
 76s Fetched 2054 kB in 1s (2307 kB/s)
 76s Reading package lists...
 79s Reading package lists...
 80s Building dependency tree...
 80s Reading state information...
 81s Calculating upgrade...
 81s The following packages will be upgraded:
 81s   libcap-ng0 pastebinit python3-systemd
 81s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 81s Need to get 76.6 kB of archives.
 81s After this operation, 349 kB of additional disk space will be used.
 81s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libcap-ng0 arm64 0.8.5-3build1 [15.0 kB]
 82s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pastebinit all 1.7.1-1 [14.9 kB]
 82s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-systemd arm64 235-1build5 [46.7 kB]
 82s Fetched 76.6 kB in 0s (211 kB/s)
 82s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79925 files and directories currently installed.)
 82s Preparing to unpack .../libcap-ng0_0.8.5-3build1_arm64.deb ...
 82s Unpacking libcap-ng0:arm64 (0.8.5-3build1) over (0.8.5-1) ...
 83s Setting up libcap-ng0:arm64 (0.8.5-3build1) ...
 83s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79925 files and directories currently installed.)
 83s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ...
 83s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
 83s Preparing to unpack .../python3-systemd_235-1build5_arm64.deb ...
 83s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
 83s Setting up pastebinit (1.7.1-1) ...
 83s Setting up python3-systemd (235-1build5) ...
 83s Processing triggers for man-db (2.12.1-3) ...
 84s Processing triggers for libc-bin (2.40-1ubuntu3) ...
 84s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 85s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 86s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 86s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 86s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 88s Reading package lists...
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 90s Calculating upgrade...
 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 91s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 96s autopkgtest [16:30:47]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 96s autopkgtest [16:30:47]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bx
 98s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (dsc) [2278 B]
 98s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (tar) [1612 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (diff) [13.8 kB]
 98s gpgv: Signature made Sun Sep 22 12:26:19 2024 UTC
 98s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
 98s gpgv:                issuer "tchet@debian.org"
 98s gpgv: Can't check signature: No public key
 98s dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found
 99s autopkgtest [16:30:50]: testing package python-bx version 0.13.0-1
 99s autopkgtest [16:30:50]: build not needed
100s autopkgtest [16:30:51]: test pybuild-autopkgtest: preparing testbed
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Starting pkgProblemResolver with broken count: 0
104s Starting 2 pkgProblemResolver with broken count: 0
104s Done
105s The following additional packages will be installed:
105s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
105s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit
105s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
105s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
105s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
105s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl
105s   libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
105s   libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
105s   libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev
105s   libpython3-dev libpython3.12-dev libstdc++-14-dev libtool libtsan2 libubsan1
105s   m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject
105s   python3-all python3-all-dev python3-build python3-bx python3-dev
105s   python3-iniconfig python3-installer python3-lzo python3-numpy
105s   python3-packaging python3-pluggy python3-pyproject-hooks python3-pytest
105s   python3-pytest-cython python3-toml python3-wheel python3.12-dev zlib1g-dev
105s Suggested packages:
105s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
105s   cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
105s   bison gdb gcc-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev
105s   libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler
105s   gcj-jdk m4-doc libmail-box-perl python3-pip python3-venv python-build-doc
105s   python-installer-doc gfortran python-numpy-doc
105s Recommended packages:
105s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
105s The following NEW packages will be installed:
105s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
105s   cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
105s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
105s   g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
105s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
105s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl
105s   libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
105s   libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
105s   libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev
105s   libpython3-dev libpython3.12-dev libstdc++-14-dev libtool libtsan2 libubsan1
105s   m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject
105s   python3-all python3-all-dev python3-build python3-bx python3-dev
105s   python3-iniconfig python3-installer python3-lzo python3-numpy
105s   python3-packaging python3-pluggy python3-pyproject-hooks python3-pytest
105s   python3-pytest-cython python3-toml python3-wheel python3.12-dev zlib1g-dev
105s 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
105s Need to get 82.7 MB/82.7 MB of archives.
105s After this operation, 304 MB of additional disk space will be used.
105s Get:1 /tmp/autopkgtest.VvZoJ8/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [836 B]
105s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
106s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB]
106s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
106s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB]
106s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
106s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
106s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
106s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
106s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
106s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
106s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
106s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
106s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
106s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
106s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
106s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
106s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
108s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
108s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
108s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
108s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
108s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
108s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
108s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
108s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
109s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
109s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
109s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
109s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
109s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu1 [2355 kB]
109s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
109s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB]
109s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
109s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
109s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
109s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
109s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB]
109s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
109s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB]
109s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
109s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
109s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB]
109s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB]
109s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
109s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB]
109s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
109s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
109s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
109s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
109s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
109s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
109s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB]
109s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-dev arm64 3.12.6-0ubuntu1 [10.2 kB]
109s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-all-dev arm64 3.12.6-0ubuntu1 [916 B]
109s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
109s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
109s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
109s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB]
109s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB]
109s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB]
109s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
110s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B]
110s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B]
110s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB]
110s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dev arm64 3.12.6-0ubuntu1 [26.7 kB]
110s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all-dev arm64 3.12.6-0ubuntu1 [908 B]
110s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lzo arm64 1.15-2build1 [9728 B]
110s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB]
110s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bx arm64 0.13.0-1 [706 kB]
110s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
110s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
110s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
110s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-cython all 0.3.1-1 [7270 B]
110s Fetched 82.7 MB in 5s (17.0 MB/s)
110s Selecting previously unselected package m4.
111s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79930 files and directories currently installed.)
111s Preparing to unpack .../00-m4_1.4.19-4build1_arm64.deb ...
111s Unpacking m4 (1.4.19-4build1) ...
111s Selecting previously unselected package autoconf.
111s Preparing to unpack .../01-autoconf_2.72-3_all.deb ...
111s Unpacking autoconf (2.72-3) ...
111s Selecting previously unselected package autotools-dev.
111s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ...
111s Unpacking autotools-dev (20220109.1) ...
111s Selecting previously unselected package automake.
111s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
111s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
111s Selecting previously unselected package autopoint.
111s Preparing to unpack .../04-autopoint_0.22.5-2_all.deb ...
111s Unpacking autopoint (0.22.5-2) ...
111s Selecting previously unselected package libisl23:arm64.
111s Preparing to unpack .../05-libisl23_0.27-1_arm64.deb ...
111s Unpacking libisl23:arm64 (0.27-1) ...
111s Selecting previously unselected package libmpc3:arm64.
111s Preparing to unpack .../06-libmpc3_1.3.1-1build2_arm64.deb ...
111s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
111s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
111s Preparing to unpack .../07-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
111s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
111s Selecting previously unselected package cpp-14.
111s Preparing to unpack .../08-cpp-14_14.2.0-8ubuntu1_arm64.deb ...
111s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
111s Selecting previously unselected package cpp-aarch64-linux-gnu.
111s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
111s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
111s Selecting previously unselected package cpp.
111s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
111s Unpacking cpp (4:14.1.0-2ubuntu1) ...
111s Selecting previously unselected package libcc1-0:arm64.
111s Preparing to unpack .../11-libcc1-0_14.2.0-8ubuntu1_arm64.deb ...
111s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ...
111s Selecting previously unselected package libgomp1:arm64.
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111s Selecting previously unselected package libtsan2:arm64.
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111s Selecting previously unselected package libubsan1:arm64.
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111s Selecting previously unselected package libhwasan0:arm64.
112s Preparing to unpack .../18-libhwasan0_14.2.0-8ubuntu1_arm64.deb ...
112s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ...
112s Selecting previously unselected package libgcc-14-dev:arm64.
112s Preparing to unpack .../19-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ...
112s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
112s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
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112s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
112s Selecting previously unselected package gcc-aarch64-linux-gnu.
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112s Unpacking gcc (4:14.1.0-2ubuntu1) ...
112s Selecting previously unselected package libstdc++-14-dev:arm64.
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113s Selecting previously unselected package g++-14.
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113s Selecting previously unselected package g++-aarch64-linux-gnu.
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113s Selecting previously unselected package cython3.
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113s Selecting previously unselected package dh-strip-nondeterminism.
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114s Selecting previously unselected package libexpat1-dev:arm64.
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114s Selecting previously unselected package liblapack3:arm64.
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114s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
114s Selecting previously unselected package zlib1g-dev:arm64.
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115s Setting up dh-python (6.20241024) ...
115s Setting up python3-iniconfig (1.1.1-2) ...
115s Setting up libarchive-zip-perl (1.68-1) ...
115s Setting up libdebhelper-perl (13.20ubuntu1) ...
115s Setting up m4 (1.4.19-4build1) ...
115s Setting up python3-all (3.12.6-0ubuntu1) ...
115s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
115s Setting up python3-wheel (0.44.0-1) ...
116s Setting up autotools-dev (20220109.1) ...
116s Setting up libblas3:arm64 (3.12.0-3build2) ...
116s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
116s Setting up python3-packaging (24.1-1) ...
116s Setting up libexpat1-dev:arm64 (2.6.2-2) ...
116s Setting up python3-pyproject-hooks (1.2.0-1) ...
116s Setting up libmpc3:arm64 (1.3.1-1build2) ...
116s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ...
117s Setting up autopoint (0.22.5-2) ...
117s Setting up python3-toml (0.10.2-1) ...
117s Setting up python3-installer (0.7.0+dfsg1-3) ...
117s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
117s Setting up autoconf (2.72-3) ...
117s Setting up python3-pluggy (1.5.0-1) ...
117s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ...
117s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
117s Setting up dwz (0.15-1build6) ...
117s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ...
117s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ...
117s Setting up debugedit (1:5.1-1) ...
117s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ...
117s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
117s Setting up libisl23:arm64 (0.27-1) ...
117s Setting up python3-build (1.2.2-1) ...
117s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ...
117s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ...
117s Setting up python3-lzo:arm64 (1.15-2build1) ...
117s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ...
117s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
117s Setting up automake (1:1.16.5-1.3ubuntu1) ...
117s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
117s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
117s Setting up liblapack3:arm64 (3.12.0-3build2) ...
117s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
117s Setting up gettext (0.22.5-2) ...
117s Setting up pybuild-plugin-pyproject (6.20241024) ...
117s Setting up python3-pytest (8.3.3-1) ...
118s Setting up libpython3.12-dev:arm64 (3.12.7-3) ...
118s Setting up intltool-debian (0.35.0+20060710.6) ...
118s Setting up python3.12-dev (3.12.7-3) ...
118s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
120s Setting up libjs-sphinxdoc (7.4.7-4) ...
120s Setting up dh-strip-nondeterminism (1.14.0-1) ...
120s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
120s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
120s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
120s Setting up python3-bx (0.13.0-1) ...
120s Setting up libpython3-dev:arm64 (3.12.6-0ubuntu1) ...
120s Setting up python3-pytest-cython (0.3.1-1) ...
120s Setting up po-debconf (1.0.21+nmu1) ...
120s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
120s Setting up libpython3-all-dev:arm64 (3.12.6-0ubuntu1) ...
120s Setting up python3-dev (3.12.6-0ubuntu1) ...
120s Setting up cpp-14 (14.2.0-8ubuntu1) ...
120s Setting up cpp (4:14.1.0-2ubuntu1) ...
120s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
120s Setting up python3-all-dev (3.12.6-0ubuntu1) ...
120s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
120s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
120s Setting up gcc-14 (14.2.0-8ubuntu1) ...
120s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
120s Setting up g++-14 (14.2.0-8ubuntu1) ...
120s Setting up libtool (2.4.7-7build1) ...
120s Setting up gcc (4:14.1.0-2ubuntu1) ...
120s Setting up dh-autoreconf (20) ...
120s Setting up g++ (4:14.1.0-2ubuntu1) ...
120s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
120s Setting up build-essential (12.10ubuntu1) ...
120s Setting up debhelper (13.20ubuntu1) ...
120s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
120s Setting up autopkgtest-satdep (0) ...
120s Processing triggers for man-db (2.12.1-3) ...
121s Processing triggers for install-info (7.1.1-1) ...
121s Processing triggers for libc-bin (2.40-1ubuntu3) ...
125s (Reading database ... 84443 files and directories currently installed.)
125s Removing autopkgtest-satdep (0) ...
126s autopkgtest [16:31:17]: test pybuild-autopkgtest: pybuild-autopkgtest
126s autopkgtest [16:31:17]: test pybuild-autopkgtest: [-----------------------
126s find lib -name "*_tests.py" >> debian/pybuild.testfiles
126s pybuild-autopkgtest
126s I: pybuild base:311: cd /tmp/autopkgtest.VvZoJ8/autopkgtest_tmp/build; python3.12 -m pytest 
127s ============================= test session starts ==============================
127s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
127s rootdir: /tmp/autopkgtest.VvZoJ8/autopkgtest_tmp/build
127s configfile: pytest.ini
127s plugins: typeguard-4.4.1, cython-0.3.1
127s collected 134 items
127s 
128s array_tree_tests.py ......                                               [  4%]
128s bgzf_tests.py .                                                          [  5%]
129s bigwig_tests.py ...........................                              [ 25%]
129s binned_array_tests.py ....                                               [ 28%]
129s bitset_tests.py ..................                                       [ 41%]
129s cdb_tests.py .                                                           [ 42%]
130s cluster_tests.py .............                                           [ 52%]
130s epo_tests.py .....                                                       [ 55%]
130s fasta_tests.py .                                                         [ 56%]
130s fpconst_tests.py .                                                       [ 57%]
131s intersection_tests.py .............                                      [ 67%]
132s interval_index_file_tests.py ...                                         [ 69%]
132s lav_tests.py .                                                           [ 70%]
132s maf_tests.py ........                                                    [ 76%]
132s newick_tests.py ........                                                 [ 82%]
132s nib_tests.py .                                                           [ 82%]
132s phast_tests.py .                                                         [ 83%]
132s pwm_tests.py ...                                                         [ 85%]
132s qdna_tests.py .                                                          [ 86%]
132s score_tests.py .....                                                     [ 90%]
132s seq_tests.py ....                                                        [ 93%]
132s sitemask_tests.py ...                                                    [ 95%]
132s transfac_tests.py .                                                      [ 96%]
132s twobit_tests.py ...                                                      [ 98%]
132s wiggle_tests.py ..                                                       [100%]
132s 
132s =============================== warnings summary ===============================
132s ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500
132s   /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
132s     self.args, self.args_source = self._decide_args(
132s 
132s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n]
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132s   /tmp/autopkgtest.VvZoJ8/autopkgtest_tmp/build/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide
132s     assert allclose(sd.sum_data / sd.valid_count, values)
132s 
132s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
132s ======================= 134 passed, 6 warnings in 5.12s ========================
132s autopkgtest [16:31:23]: test pybuild-autopkgtest: -----------------------]
133s autopkgtest [16:31:24]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
133s pybuild-autopkgtest  PASS
133s autopkgtest [16:31:24]: @@@@@@@@@@@@@@@@@@@@ summary
133s pybuild-autopkgtest  PASS
154s nova [W] Skipping flock in bos03-arm64
154s Creating nova instance adt-plucky-arm64-python-bx-20241114-162911-juju-7f2275-prod-proposed-migration-environment-15-dc925a64-6049-4e66-aaec-df781b75c285 from image adt/ubuntu-plucky-arm64-server-20241114.img (UUID 4472f5f7-859f-4441-9e8e-9550fb35f210)...