0s autopkgtest [16:33:15]: starting date and time: 2024-11-18 16:33:15+0000 1s autopkgtest [16:33:16]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 1s autopkgtest [16:33:16]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.szfu9ie1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade python-biom-format --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-39.secgroup --name adt-plucky-arm64-python-biom-format-20241118-163315-juju-7f2275-prod-proposed-migration-environment-15-26a5296d-b1f4-4d64-aad3-2c9e743377ad --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 144s autopkgtest [16:35:39]: testbed dpkg architecture: arm64 144s autopkgtest [16:35:39]: testbed apt version: 2.9.8 144s autopkgtest [16:35:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 145s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 145s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 146s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 146s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 146s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 146s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [103 kB] 146s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 146s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [638 kB] 146s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 147s Fetched 1778 kB in 2s (1109 kB/s) 147s Reading package lists... 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Calculating upgrade... 150s The following NEW packages will be installed: 150s liblsof0 150s The following packages will be upgraded: 150s libnvme1t64 linux-firmware lsof 151s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 538 MB of archives. 151s After this operation, 1548 kB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 151s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 151s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 151s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 174s Fetched 538 MB in 23s (23.6 MB/s) 174s Selecting previously unselected package liblsof0. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 174s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 174s Unpacking liblsof0 (4.99.3+dfsg-2) ... 174s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 174s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 174s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 174s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 174s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 174s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 177s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 177s Setting up liblsof0 (4.99.3+dfsg-2) ... 177s Setting up libnvme1t64 (1.11.1-1) ... 177s Setting up lsof (4.99.3+dfsg-2) ... 177s Processing triggers for man-db (2.13.0-1) ... 178s Processing triggers for libc-bin (2.40-1ubuntu3) ... 178s Processing triggers for initramfs-tools (0.142ubuntu35) ... 178s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 178s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 195s System running in EFI mode, skipping. 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 196s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 197s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 197s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 197s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 198s Reading package lists... 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s Calculating upgrade... 199s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s Reading package lists... 200s Building dependency tree... 200s Reading state information... 201s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s autopkgtest [16:36:36]: rebooting testbed after setup commands that affected boot 205s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 228s autopkgtest [16:37:03]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 231s autopkgtest [16:37:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biom-format 234s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-biom-format 2.1.16-1 (dsc) [2628 B] 234s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-biom-format 2.1.16-1 (tar) [11.9 MB] 234s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-biom-format 2.1.16-1 (diff) [11.6 kB] 234s gpgv: Signature made Mon May 27 20:43:46 2024 UTC 234s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 234s gpgv: issuer "emollier@debian.org" 234s gpgv: Can't check signature: No public key 234s dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: no acceptable signature found 235s autopkgtest [16:37:10]: testing package python-biom-format version 2.1.16-1 235s autopkgtest [16:37:10]: build not needed 238s autopkgtest [16:37:13]: test run-unit-test: preparing testbed 239s Reading package lists... 239s Building dependency tree... 239s Reading state information... 239s Starting pkgProblemResolver with broken count: 0 240s Starting 2 pkgProblemResolver with broken count: 0 240s Done 240s The following additional packages will be installed: 240s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 240s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 240s libsz2 python-biom-format-doc python3-biom-format python3-click 240s python3-colorama python3-dateutil python3-decorator python3-h5py 240s python3-h5py-serial python3-numpy python3-pandas python3-pandas-lib 240s python3-scipy python3-tz 240s Suggested packages: 240s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 240s python-pandas-doc python3-statsmodels python-scipy-doc 240s Recommended packages: 240s javascript-common python3-matplotlib python3-bottleneck python3-numexpr 240s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 240s python3-tables g++ | c++-compiler python3-pil 240s The following NEW packages will be installed: 240s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 240s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 240s liblbfgsb0 liblzf1 libsz2 python-biom-format-doc python3-biom-format 240s python3-click python3-colorama python3-dateutil python3-decorator 240s python3-h5py python3-h5py-serial python3-numpy python3-pandas 240s python3-pandas-lib python3-scipy python3-tz 240s 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. 240s Need to get 39.9 MB/39.9 MB of archives. 240s After this operation, 221 MB of additional disk space will be used. 240s Get:1 /tmp/autopkgtest.PXskbB/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 240s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 241s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 241s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 241s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 241s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 241s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 241s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 241s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 241s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 241s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 241s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 241s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-biom-format-doc all 2.1.16-1 [57.5 kB] 241s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 241s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 241s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 241s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 241s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 241s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 241s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 241s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5ubuntu1 [6921 kB] 241s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 241s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 241s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5ubuntu1 [19.1 MB] 242s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 242s Fetched 39.9 MB in 2s (25.6 MB/s) 242s Selecting previously unselected package libaec0:arm64. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 243s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ... 243s Unpacking libaec0:arm64 (1.1.3-1) ... 243s Selecting previously unselected package libblas3:arm64. 243s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ... 243s Unpacking libblas3:arm64 (3.12.0-3build2) ... 243s Selecting previously unselected package libgfortran5:arm64. 243s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 243s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 243s Selecting previously unselected package libsz2:arm64. 243s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ... 243s Unpacking libsz2:arm64 (1.1.3-1) ... 243s Selecting previously unselected package libhdf5-103-1t64:arm64. 243s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 243s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 243s Selecting previously unselected package libhdf5-hl-100t64:arm64. 243s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 243s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 243s Selecting previously unselected package libjs-jquery. 243s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 243s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 243s Selecting previously unselected package libjs-underscore. 243s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 243s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 243s Selecting previously unselected package libjs-sphinxdoc. 243s Preparing to unpack .../08-libjs-sphinxdoc_7.4.7-4_all.deb ... 243s Unpacking libjs-sphinxdoc (7.4.7-4) ... 243s Selecting previously unselected package liblapack3:arm64. 243s Preparing to unpack .../09-liblapack3_3.12.0-3build2_arm64.deb ... 243s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 243s Selecting previously unselected package liblbfgsb0:arm64. 243s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 243s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 243s Selecting previously unselected package liblzf1:arm64. 243s Preparing to unpack .../11-liblzf1_3.6-4_arm64.deb ... 243s Unpacking liblzf1:arm64 (3.6-4) ... 243s Selecting previously unselected package python-biom-format-doc. 243s Preparing to unpack .../12-python-biom-format-doc_2.1.16-1_all.deb ... 243s Unpacking python-biom-format-doc (2.1.16-1) ... 243s Selecting previously unselected package python3-numpy. 244s Preparing to unpack .../13-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 244s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 244s Selecting previously unselected package python3-h5py-serial. 244s Preparing to unpack .../14-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 244s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 244s Selecting previously unselected package python3-h5py. 244s Preparing to unpack .../15-python3-h5py_3.11.0-8ubuntu1_all.deb ... 244s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 244s Selecting previously unselected package python3-colorama. 244s Preparing to unpack .../16-python3-colorama_0.4.6-4_all.deb ... 244s Unpacking python3-colorama (0.4.6-4) ... 244s Selecting previously unselected package python3-click. 244s Preparing to unpack .../17-python3-click_8.1.7-2_all.deb ... 244s Unpacking python3-click (8.1.7-2) ... 244s Selecting previously unselected package python3-dateutil. 244s Preparing to unpack .../18-python3-dateutil_2.9.0-3_all.deb ... 244s Unpacking python3-dateutil (2.9.0-3) ... 244s Selecting previously unselected package python3-tz. 244s Preparing to unpack .../19-python3-tz_2024.1-2_all.deb ... 244s Unpacking python3-tz (2024.1-2) ... 244s Selecting previously unselected package python3-pandas-lib:arm64. 244s Preparing to unpack .../20-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_arm64.deb ... 244s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 244s Selecting previously unselected package python3-pandas. 244s Preparing to unpack .../21-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 244s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 245s Selecting previously unselected package python3-decorator. 245s Preparing to unpack .../22-python3-decorator_5.1.1-5_all.deb ... 245s Unpacking python3-decorator (5.1.1-5) ... 245s Selecting previously unselected package python3-scipy. 245s Preparing to unpack .../23-python3-scipy_1.13.1-5ubuntu1_arm64.deb ... 245s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 245s Selecting previously unselected package python3-biom-format. 245s Preparing to unpack .../24-python3-biom-format_2.1.16-1_arm64.deb ... 245s Unpacking python3-biom-format (2.1.16-1) ... 245s Selecting previously unselected package autopkgtest-satdep. 245s Preparing to unpack .../25-1-autopkgtest-satdep.deb ... 245s Unpacking autopkgtest-satdep (0) ... 245s Setting up python3-colorama (0.4.6-4) ... 246s Setting up python3-click (8.1.7-2) ... 246s Setting up libaec0:arm64 (1.1.3-1) ... 246s Setting up python3-tz (2024.1-2) ... 246s Setting up python3-decorator (5.1.1-5) ... 246s Setting up libblas3:arm64 (3.12.0-3build2) ... 246s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 246s Setting up liblzf1:arm64 (3.6-4) ... 246s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 246s Setting up python3-dateutil (2.9.0-3) ... 246s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 246s Setting up libsz2:arm64 (1.1.3-1) ... 246s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 246s Setting up liblapack3:arm64 (3.12.0-3build2) ... 246s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 246s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 248s Setting up libjs-sphinxdoc (7.4.7-4) ... 248s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 248s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 248s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 248s Setting up python3-scipy (1.13.1-5ubuntu1) ... 252s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 252s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 252s Setting up python-biom-format-doc (2.1.16-1) ... 252s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ... 258s Setting up python3-h5py (3.11.0-8ubuntu1) ... 258s Setting up python3-biom-format (2.1.16-1) ... 258s Setting up autopkgtest-satdep (0) ... 258s Processing triggers for man-db (2.13.0-1) ... 259s Processing triggers for libc-bin (2.40-1ubuntu3) ... 263s (Reading database ... 84713 files and directories currently installed.) 263s Removing autopkgtest-satdep (0) ... 264s autopkgtest [16:37:39]: test run-unit-test: [----------------------- 265s 265s System information 265s ================== 265s Platform: linux 265s Python version: 3.12.7 (main, Nov 8 2024, 17:55:36) [GCC 14.2.0] 265s Python executable: /usr/bin/python3 265s 265s Dependency versions 265s =================== 265s click version: 8.1.7 265s NumPy version: 1.26.4 265s SciPy version: 1.13.1 265s h5py version: 3.11.0 265s 265s biom-format package information 265s =============================== 265s biom-format version: 2.1.16 265s 266s 266s The input file is a valid BIOM-formatted file. 267s 267s The input file is a valid BIOM-formatted file. 268s 268s The input file is a valid BIOM-formatted file. 269s 269s The input file is a valid BIOM-formatted file. 271s + table=examples/min_sparse_otu_table_hdf5.biom 271s + obsmd=examples/obs_md.txt 271s + [ ! -f examples/min_sparse_otu_table_hdf5.biom ] 271s + biom show-install-info 272s 272s System information 272s ================== 272s Platform: linux 272s Python version: 3.12.7 (main, Nov 8 2024, 17:55:36) [GCC 14.2.0] 272s Python executable: /usr/bin/python3 272s 272s Dependency versions 272s =================== 272s click version: 8.1.7 272s NumPy version: 1.26.4 272s SciPy version: 1.13.1 272s h5py version: 3.11.0 272s 272s biom-format package information 272s =============================== 272s biom-format version: 2.1.16 272s 273s + biom validate-table -i examples/min_sparse_otu_table_hdf5.biom 273s 273s The input file is a valid BIOM-formatted file. 274s + biom add-metadata -i examples/min_sparse_otu_table_hdf5.biom -o test_add_metadata.biom --observation-metadata-fp examples/obs_md.txt --sc-separated taxonomy 275s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_json.biom --to-json 276s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_tsv.txt --to-tsv 277s + biom validate-table -i test_json.biom 278s 278s The input file is a valid BIOM-formatted file. 278s + biom convert -i test_json.biom -o test_hdf5.biom --to-hdf5 279s + biom validate-table -i test_hdf5.biom 280s 280s The input file is a valid BIOM-formatted file. 280s + biom convert -i test_json.biom -o test_tsv.txt --to-tsv 281s + biom convert -i test_tsv.txt -o test_hdf5.biom --to-hdf5 --table-type OTU table 282s + biom validate-table -i test_hdf5.biom 283s 283s The input file is a valid BIOM-formatted file. 283s + biom convert -i test_tsv.txt -o test_json.biom --to-json --table-type OTU table 285s + biom validate-table -i test_json.biom 285s 285s The input file is a valid BIOM-formatted file. 286s + biom head -i examples/min_sparse_otu_table_hdf5.biom 286s # Constructed from biom file 286s #OTU ID Sample1 Sample2 Sample3 Sample4 Sample5 286s GG_OTU_1 0.0 0.0 1.0 0.0 0.0 286s GG_OTU_2 5.0 1.0 0.0 2.0 3.0 286s GG_OTU_3 0.0 0.0 1.0 4.0 0.0 286s GG_OTU_4 2.0 1.0 1.0 0.0 0.0 286s GG_OTU_5 0.0 1.0 1.0 0.0 0.0 287s + biom table-ids -i examples/min_sparse_otu_table_hdf5.biom 287s Sample1 287s Sample2 287s Sample3 287s Sample4 287s Sample5 287s Sample6 288s + biom normalize-table -i examples/min_sparse_otu_table_hdf5.biom -o test_norm.biom -p 289s + cat 289s + biom subset-table -i examples/min_sparse_otu_table_hdf5.biom -o test_subset.biom -a observation -s ids.txt 290s + biom summarize-table -i examples/min_sparse_otu_table_hdf5.biom 290s Num samples: 6 290s Num observations: 5 290s Total count: 27 290s Table density (fraction of non-zero values): 0.500 290s 290s Counts/sample summary: 290s Min: 3.000 290s Max: 7.000 290s Median: 4.000 290s Mean: 4.500 290s Std. dev.: 1.500 290s Sample Metadata Categories: None provided 290s Observation Metadata Categories: None provided 290s 290s Counts/sample detail: 290s Sample2: 3.000 290s Sample5: 3.000 290s Sample3: 4.000 290s Sample6: 4.000 290s Sample4: 6.000 290s Sample1: 7.000 291s + cat 291s + biom from-uc -i uctest -o test_uc.biom 292s If this message was shown, then all commands executed without failure 292s + echo If this message was shown, then all commands executed without failure 292s autopkgtest [16:38:07]: test run-unit-test: -----------------------] 293s autopkgtest [16:38:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 293s run-unit-test PASS 293s autopkgtest [16:38:08]: test autodep8-python3: preparing testbed 375s autopkgtest [16:39:30]: testbed dpkg architecture: arm64 376s autopkgtest [16:39:31]: testbed apt version: 2.9.8 376s autopkgtest [16:39:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 377s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 377s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 377s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 377s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 377s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 377s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [103 kB] 377s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 377s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [638 kB] 377s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 377s Fetched 1778 kB in 1s (2086 kB/s) 377s Reading package lists... 380s Reading package lists... 380s Building dependency tree... 380s Reading state information... 381s Calculating upgrade... 382s The following NEW packages will be installed: 382s liblsof0 382s The following packages will be upgraded: 382s libnvme1t64 linux-firmware lsof 382s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 382s Need to get 538 MB of archives. 382s After this operation, 1548 kB of additional disk space will be used. 382s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 383s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 383s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 383s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 398s Fetched 538 MB in 15s (35.4 MB/s) 398s Selecting previously unselected package liblsof0. 398s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 398s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 398s Unpacking liblsof0 (4.99.3+dfsg-2) ... 398s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 398s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 398s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 398s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 399s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 399s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 402s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 402s Setting up liblsof0 (4.99.3+dfsg-2) ... 402s Setting up libnvme1t64 (1.11.1-1) ... 402s Setting up lsof (4.99.3+dfsg-2) ... 402s Processing triggers for man-db (2.13.0-1) ... 403s Processing triggers for libc-bin (2.40-1ubuntu3) ... 403s Processing triggers for initramfs-tools (0.142ubuntu35) ... 403s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 403s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 426s System running in EFI mode, skipping. 426s Reading package lists... 427s Building dependency tree... 427s Reading state information... 428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 428s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 428s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 428s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 428s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 430s Reading package lists... 430s Reading package lists... 431s Building dependency tree... 431s Reading state information... 432s Calculating upgrade... 433s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 433s Reading package lists... 433s Building dependency tree... 433s Reading state information... 434s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 434s autopkgtest [16:40:29]: rebooting testbed after setup commands that affected boot 438s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 464s Reading package lists... 465s Building dependency tree... 465s Reading state information... 465s Starting pkgProblemResolver with broken count: 0 465s Starting 2 pkgProblemResolver with broken count: 0 465s Done 466s The following additional packages will be installed: 466s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 466s liblbfgsb0 liblzf1 libsz2 python3-all python3-biom-format python3-click 466s python3-colorama python3-dateutil python3-decorator python3-h5py 466s python3-h5py-serial python3-numpy python3-pandas python3-pandas-lib 466s python3-scipy python3-tz 466s Suggested packages: 466s python-biom-format-doc python-h5py-doc gcc gfortran python-numpy-doc 466s python3-dev python3-pytest python-pandas-doc python3-statsmodels 466s python-scipy-doc 466s Recommended packages: 466s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 466s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 466s g++ | c++-compiler python3-pil 466s The following NEW packages will be installed: 466s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 466s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libsz2 python3-all 466s python3-biom-format python3-click python3-colorama python3-dateutil 466s python3-decorator python3-h5py python3-h5py-serial python3-numpy 466s python3-pandas python3-pandas-lib python3-scipy python3-tz 467s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 467s Need to get 39.3 MB/39.3 MB of archives. 467s After this operation, 219 MB of additional disk space will be used. 467s Get:1 /tmp/autopkgtest.PXskbB/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 467s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 467s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 467s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 467s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 467s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 467s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 467s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 467s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 467s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 467s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 467s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 468s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 468s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 468s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 468s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 468s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 468s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 468s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5ubuntu1 [6921 kB] 468s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 468s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 468s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5ubuntu1 [19.1 MB] 469s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 470s Fetched 39.3 MB in 3s (13.6 MB/s) 470s Selecting previously unselected package libaec0:arm64. 470s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 470s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ... 470s Unpacking libaec0:arm64 (1.1.3-1) ... 470s Selecting previously unselected package libblas3:arm64. 470s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ... 470s Unpacking libblas3:arm64 (3.12.0-3build2) ... 471s Selecting previously unselected package libgfortran5:arm64. 471s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 471s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 471s Selecting previously unselected package libsz2:arm64. 471s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ... 471s Unpacking libsz2:arm64 (1.1.3-1) ... 471s Selecting previously unselected package libhdf5-103-1t64:arm64. 471s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 471s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 471s Selecting previously unselected package libhdf5-hl-100t64:arm64. 471s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 471s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 471s Selecting previously unselected package liblapack3:arm64. 471s Preparing to unpack .../06-liblapack3_3.12.0-3build2_arm64.deb ... 471s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 471s Selecting previously unselected package liblbfgsb0:arm64. 471s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 471s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 471s Selecting previously unselected package liblzf1:arm64. 471s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ... 471s Unpacking liblzf1:arm64 (3.6-4) ... 471s Selecting previously unselected package python3-all. 471s Preparing to unpack .../09-python3-all_3.12.6-0ubuntu1_arm64.deb ... 471s Unpacking python3-all (3.12.6-0ubuntu1) ... 471s Selecting previously unselected package python3-numpy. 471s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 471s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 471s Selecting previously unselected package python3-h5py-serial. 471s Preparing to unpack .../11-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 471s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 471s Selecting previously unselected package python3-h5py. 471s Preparing to unpack .../12-python3-h5py_3.11.0-8ubuntu1_all.deb ... 471s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 472s Selecting previously unselected package python3-colorama. 472s Preparing to unpack .../13-python3-colorama_0.4.6-4_all.deb ... 472s Unpacking python3-colorama (0.4.6-4) ... 472s Selecting previously unselected package python3-click. 472s Preparing to unpack .../14-python3-click_8.1.7-2_all.deb ... 472s Unpacking python3-click (8.1.7-2) ... 472s Selecting previously unselected package python3-dateutil. 472s Preparing to unpack .../15-python3-dateutil_2.9.0-3_all.deb ... 472s Unpacking python3-dateutil (2.9.0-3) ... 472s Selecting previously unselected package python3-tz. 472s Preparing to unpack .../16-python3-tz_2024.1-2_all.deb ... 472s Unpacking python3-tz (2024.1-2) ... 472s Selecting previously unselected package python3-pandas-lib:arm64. 472s Preparing to unpack .../17-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_arm64.deb ... 472s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 472s Selecting previously unselected package python3-pandas. 472s Preparing to unpack .../18-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 472s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 472s Selecting previously unselected package python3-decorator. 472s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 472s Unpacking python3-decorator (5.1.1-5) ... 472s Selecting previously unselected package python3-scipy. 472s Preparing to unpack .../20-python3-scipy_1.13.1-5ubuntu1_arm64.deb ... 472s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 473s Selecting previously unselected package python3-biom-format. 473s Preparing to unpack .../21-python3-biom-format_2.1.16-1_arm64.deb ... 473s Unpacking python3-biom-format (2.1.16-1) ... 473s Selecting previously unselected package autopkgtest-satdep. 473s Preparing to unpack .../22-2-autopkgtest-satdep.deb ... 473s Unpacking autopkgtest-satdep (0) ... 473s Setting up python3-colorama (0.4.6-4) ... 473s Setting up python3-all (3.12.6-0ubuntu1) ... 473s Setting up python3-click (8.1.7-2) ... 474s Setting up libaec0:arm64 (1.1.3-1) ... 474s Setting up python3-tz (2024.1-2) ... 474s Setting up python3-decorator (5.1.1-5) ... 474s Setting up libblas3:arm64 (3.12.0-3build2) ... 474s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 474s Setting up liblzf1:arm64 (3.6-4) ... 474s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 474s Setting up python3-dateutil (2.9.0-3) ... 474s Setting up libsz2:arm64 (1.1.3-1) ... 474s Setting up liblapack3:arm64 (3.12.0-3build2) ... 474s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 474s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 477s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 477s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 477s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 477s Setting up python3-scipy (1.13.1-5ubuntu1) ... 482s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 482s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 482s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ... 491s Setting up python3-h5py (3.11.0-8ubuntu1) ... 491s Setting up python3-biom-format (2.1.16-1) ... 491s Setting up autopkgtest-satdep (0) ... 491s Processing triggers for man-db (2.13.0-1) ... 492s Processing triggers for libc-bin (2.40-1ubuntu3) ... 499s (Reading database ... 84615 files and directories currently installed.) 499s Removing autopkgtest-satdep (0) ... 504s autopkgtest [16:41:39]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biom; print(biom)" ; done 504s autopkgtest [16:41:39]: test autodep8-python3: [----------------------- 505s Testing with python3.12: 506s 508s autopkgtest [16:41:42]: test autodep8-python3: -----------------------] 508s autopkgtest [16:41:43]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 508s autodep8-python3 PASS (superficial) 509s autopkgtest [16:41:44]: @@@@@@@@@@@@@@@@@@@@ summary 509s run-unit-test PASS 509s autodep8-python3 PASS (superficial) 520s nova [W] Skipping flock in bos03-arm64 520s Creating nova instance adt-plucky-arm64-python-biom-format-20241118-163315-juju-7f2275-prod-proposed-migration-environment-15-26a5296d-b1f4-4d64-aad3-2c9e743377ad from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)... 520s nova [W] Skipping flock in bos03-arm64 520s Creating nova instance adt-plucky-arm64-python-biom-format-20241118-163315-juju-7f2275-prod-proposed-migration-environment-15-26a5296d-b1f4-4d64-aad3-2c9e743377ad from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)...