0s autopkgtest [10:32:55]: starting date and time: 2024-11-13 10:32:55+0000 0s autopkgtest [10:32:55]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [10:32:55]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1i33s6qm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bcbio-gff --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-2.secgroup --name adt-plucky-arm64-python-bcbio-gff-20241113-101342-juju-7f2275-prod-proposed-migration-environment-20-7df7069c-bb03-478a-af15-09c308f51ece --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 78s autopkgtest [10:34:13]: testbed dpkg architecture: arm64 78s autopkgtest [10:34:13]: testbed apt version: 2.9.8 78s autopkgtest [10:34:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 79s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 80s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 80s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 80s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 80s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 80s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 80s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 80s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 80s Fetched 1794 kB in 1s (2142 kB/s) 80s Reading package lists... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s Calculating upgrade... 85s The following NEW packages will be installed: 85s python3.13-gdbm 85s The following packages will be upgraded: 85s libpython3-stdlib python3 python3-gdbm python3-minimal 85s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 101 kB of archives. 85s After this operation, 141 kB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 86s Fetched 101 kB in 0s (285 kB/s) 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 86s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 86s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 86s Setting up python3-minimal (3.12.7-1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 87s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 87s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 87s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 87s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 87s Selecting previously unselected package python3.13-gdbm. 87s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 87s Unpacking python3.13-gdbm (3.13.0-2) ... 87s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 87s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 87s Setting up python3.13-gdbm (3.13.0-2) ... 87s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 87s Setting up python3 (3.12.7-1) ... 88s Setting up python3-gdbm:arm64 (3.12.7-1) ... 88s Processing triggers for man-db (2.12.1-3) ... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 91s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [10:34:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 106s autopkgtest [10:34:41]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bcbio-gff 110s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (dsc) [2386 B] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (tar) [20.1 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (diff) [23.9 kB] 110s gpgv: Signature made Tue Nov 5 22:11:23 2024 UTC 110s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 110s gpgv: issuer "emollier@debian.org" 110s gpgv: Can't check signature: No public key 110s dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: no acceptable signature found 110s autopkgtest [10:34:45]: testing package python-bcbio-gff version 0.7.1-2 118s autopkgtest [10:34:53]: build not needed 124s autopkgtest [10:34:59]: test run-unit-test: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 133s The following additional packages will be installed: 133s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 133s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 133s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 133s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 133s libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6 133s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 133s python3-all python3-bcbio-gff python3-biopython python3-cairo 133s python3-freetype python3-numpy python3-pil python3-reportlab 133s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 133s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 133s Suggested packages: 133s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 133s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 133s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 133s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 133s gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 133s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 133s rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc 133s debhelper 133s Recommended packages: 133s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 133s The following NEW packages will be installed: 133s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 133s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 133s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 133s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 133s libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib libraqm0 133s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 133s libxcb-shm0 libxrender1 python3-all python3-bcbio-gff python3-biopython 133s python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab 133s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 133s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 133s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 32.1 MB/32.1 MB of archives. 133s After this operation, 106 MB of additional disk space will be used. 133s Get:1 /tmp/autopkgtest.e0AcsO/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 134s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 134s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 134s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 134s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 134s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 134s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 134s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 134s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 134s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 134s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 134s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 134s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 134s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 134s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 134s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 134s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 134s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 134s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 134s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 134s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 134s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 134s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 134s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 134s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 134s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 134s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 134s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 134s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 134s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 134s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 134s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 134s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 134s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 134s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 134s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 134s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 134s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 134s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 134s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 134s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2 [121 kB] 134s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 134s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 134s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 135s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 135s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 135s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4 [1689 kB] 135s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 135s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bcbio-gff all 0.7.1-2 [33.9 kB] 135s Fetched 32.1 MB in 2s (19.6 MB/s) 135s Selecting previously unselected package libpython3.13-minimal:arm64. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 135s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 135s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 135s Selecting previously unselected package python3.13-minimal. 135s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 135s Unpacking python3.13-minimal (3.13.0-2) ... 136s Selecting previously unselected package sgml-base. 136s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 136s Unpacking sgml-base (1.31) ... 136s Selecting previously unselected package fonts-dejavu-mono. 136s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-mono (2.37-8) ... 136s Selecting previously unselected package fonts-dejavu-core. 136s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-core (2.37-8) ... 136s Selecting previously unselected package libfontenc1:arm64. 136s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 136s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 136s Selecting previously unselected package x11-common. 136s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 136s Unpacking x11-common (1:7.7+23ubuntu3) ... 136s Selecting previously unselected package xfonts-encodings. 136s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 136s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 136s Selecting previously unselected package xfonts-utils. 136s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_arm64.deb ... 136s Unpacking xfonts-utils (1:7.7+7) ... 136s Selecting previously unselected package fonts-urw-base35. 136s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 136s Unpacking fonts-urw-base35 (20200910-8) ... 136s Selecting previously unselected package fontconfig-config. 136s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 137s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 137s Selecting previously unselected package libblas3:arm64. 137s Preparing to unpack .../11-libblas3_3.12.0-3build2_arm64.deb ... 137s Unpacking libblas3:arm64 (3.12.0-3build2) ... 137s Selecting previously unselected package libfontconfig1:arm64. 137s Preparing to unpack .../12-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 137s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 137s Selecting previously unselected package libpixman-1-0:arm64. 137s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_arm64.deb ... 137s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 137s Selecting previously unselected package libxcb-render0:arm64. 137s Preparing to unpack .../14-libxcb-render0_1.17.0-2_arm64.deb ... 137s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 137s Selecting previously unselected package libxcb-shm0:arm64. 137s Preparing to unpack .../15-libxcb-shm0_1.17.0-2_arm64.deb ... 137s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 137s Selecting previously unselected package libxrender1:arm64. 137s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 137s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 137s Selecting previously unselected package libcairo2:arm64. 137s Preparing to unpack .../17-libcairo2_1.18.2-2_arm64.deb ... 137s Unpacking libcairo2:arm64 (1.18.2-2) ... 137s Selecting previously unselected package libdeflate0:arm64. 137s Preparing to unpack .../18-libdeflate0_1.22-1_arm64.deb ... 137s Unpacking libdeflate0:arm64 (1.22-1) ... 137s Selecting previously unselected package libgfortran5:arm64. 137s Preparing to unpack .../19-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 137s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 137s Selecting previously unselected package libgomp1:arm64. 137s Preparing to unpack .../20-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 137s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 137s Selecting previously unselected package libgraphite2-3:arm64. 137s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 137s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 137s Selecting previously unselected package libharfbuzz0b:arm64. 137s Preparing to unpack .../22-libharfbuzz0b_10.0.1-1_arm64.deb ... 137s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 138s Selecting previously unselected package libimagequant0:arm64. 138s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 138s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 138s Selecting previously unselected package libjpeg-turbo8:arm64. 138s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 138s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 138s Selecting previously unselected package libjpeg8:arm64. 138s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 138s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 138s Selecting previously unselected package liblapack3:arm64. 138s Preparing to unpack .../26-liblapack3_3.12.0-3build2_arm64.deb ... 138s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 138s Selecting previously unselected package liblcms2-2:arm64. 138s Preparing to unpack .../27-liblcms2-2_2.16-2_arm64.deb ... 138s Unpacking liblcms2-2:arm64 (2.16-2) ... 138s Selecting previously unselected package liblerc4:arm64. 138s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 138s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 138s Selecting previously unselected package libpython3.13-stdlib:arm64. 138s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 138s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 138s Selecting previously unselected package libraqm0:arm64. 138s Preparing to unpack .../30-libraqm0_0.10.1-1build1_arm64.deb ... 138s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 138s Selecting previously unselected package libsharpyuv0:arm64. 138s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_arm64.deb ... 138s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 138s Selecting previously unselected package libjbig0:arm64. 138s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 138s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 138s Selecting previously unselected package libwebp7:arm64. 138s Preparing to unpack .../33-libwebp7_1.4.0-0.1_arm64.deb ... 138s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 138s Selecting previously unselected package libtiff6:arm64. 138s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 138s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 138s Selecting previously unselected package libwebpdemux2:arm64. 138s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_arm64.deb ... 138s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 138s Selecting previously unselected package libwebpmux3:arm64. 138s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_arm64.deb ... 138s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 139s Selecting previously unselected package python3.13. 139s Preparing to unpack .../37-python3.13_3.13.0-2_arm64.deb ... 139s Unpacking python3.13 (3.13.0-2) ... 139s Selecting previously unselected package python3-all. 139s Preparing to unpack .../38-python3-all_3.12.7-1_arm64.deb ... 139s Unpacking python3-all (3.12.7-1) ... 139s Selecting previously unselected package python3-numpy. 139s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 139s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 139s Selecting previously unselected package libopenjp2-7:arm64. 139s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 139s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 139s Selecting previously unselected package python3-pil:arm64. 139s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 139s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 139s Selecting previously unselected package python3-cairo. 139s Preparing to unpack .../42-python3-cairo_1.26.1-2_arm64.deb ... 139s Unpacking python3-cairo (1.26.1-2) ... 139s Selecting previously unselected package python3-freetype. 139s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 139s Unpacking python3-freetype (2.5.1-1) ... 139s Selecting previously unselected package python3-rlpycairo. 139s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 139s Unpacking python3-rlpycairo (0.3.0-3) ... 139s Selecting previously unselected package python3-reportlab. 139s Preparing to unpack .../45-python3-reportlab_4.2.5-1_all.deb ... 139s Unpacking python3-reportlab (4.2.5-1) ... 139s Selecting previously unselected package xml-core. 139s Preparing to unpack .../46-xml-core_0.19_all.deb ... 139s Unpacking xml-core (0.19) ... 139s Selecting previously unselected package w3c-sgml-lib. 139s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 139s Unpacking w3c-sgml-lib (1.3-3) ... 140s Selecting previously unselected package python3-biopython. 140s Preparing to unpack .../48-python3-biopython_1.84+dfsg-4_arm64.deb ... 140s Unpacking python3-biopython (1.84+dfsg-4) ... 140s Selecting previously unselected package python3-six. 140s Preparing to unpack .../49-python3-six_1.16.0-7_all.deb ... 140s Unpacking python3-six (1.16.0-7) ... 140s Selecting previously unselected package python3-bcbio-gff. 140s Preparing to unpack .../50-python3-bcbio-gff_0.7.1-2_all.deb ... 140s Unpacking python3-bcbio-gff (0.7.1-2) ... 140s Selecting previously unselected package autopkgtest-satdep. 140s Preparing to unpack .../51-1-autopkgtest-satdep.deb ... 140s Unpacking autopkgtest-satdep (0) ... 140s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 140s Setting up liblcms2-2:arm64 (2.16-2) ... 140s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 140s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 140s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 140s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 140s Setting up libxcb-render0:arm64 (1.17.0-2) ... 140s Setting up x11-common (1:7.7+23ubuntu3) ... 140s Setting up libdeflate0:arm64 (1.22-1) ... 140s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 140s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 140s Setting up python3-freetype (2.5.1-1) ... 141s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 141s Setting up python3-six (1.16.0-7) ... 141s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 141s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 141s Setting up libblas3:arm64 (3.12.0-3build2) ... 141s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 141s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 141s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 141s Setting up fonts-dejavu-mono (2.37-8) ... 141s Setting up fonts-dejavu-core (2.37-8) ... 141s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 141s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 141s Setting up libwebp7:arm64 (1.4.0-0.1) ... 141s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 141s Setting up python3.13-minimal (3.13.0-2) ... 142s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 142s Setting up sgml-base (1.31) ... 142s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 142s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 142s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 142s Setting up liblapack3:arm64 (3.12.0-3build2) ... 142s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 142s Setting up python3.13 (3.13.0-2) ... 143s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 143s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 143s Setting up python3-all (3.12.7-1) ... 143s Setting up xfonts-utils (1:7.7+7) ... 143s Setting up libraqm0:arm64 (0.10.1-1build1) ... 143s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 148s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 148s Setting up xml-core (0.19) ... 148s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 148s Setting up fonts-urw-base35 (20200910-8) ... 148s Setting up libcairo2:arm64 (1.18.2-2) ... 148s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 149s Setting up python3-cairo (1.26.1-2) ... 149s Setting up python3-rlpycairo (0.3.0-3) ... 149s Setting up python3-reportlab (4.2.5-1) ... 151s Processing triggers for libc-bin (2.40-1ubuntu3) ... 151s Processing triggers for systemd (256.5-2ubuntu4) ... 151s Processing triggers for man-db (2.12.1-3) ... 152s Processing triggers for sgml-base (1.31) ... 152s Setting up w3c-sgml-lib (1.3-3) ... 181s Setting up python3-biopython (1.84+dfsg-4) ... 184s Setting up python3-bcbio-gff (0.7.1-2) ... 184s Setting up autopkgtest-satdep (0) ... 189s (Reading database ... 83936 files and directories currently installed.) 189s Removing autopkgtest-satdep (0) ... 190s autopkgtest [10:36:05]: test run-unit-test: [----------------------- 191s Traceback (most recent call last): 191s File "/tmp/autopkgtest.e0AcsO/autopkgtest_tmp/test_GFFSeqIOFeatureAdder.py", line 11, in 191s from Bio import SeqIO 191s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 191s from Bio.SeqIO import TwoBitIO 191s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 191s raise MissingPythonDependencyError( 191s ...<2 lines>... 191s ) from None 191s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 191s autopkgtest [10:36:06]: test run-unit-test: -----------------------] 192s autopkgtest [10:36:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 192s run-unit-test FAIL non-zero exit status 1 193s autopkgtest [10:36:08]: test autodep8-python3: preparing testbed 293s autopkgtest [10:37:48]: testbed dpkg architecture: arm64 293s autopkgtest [10:37:48]: testbed apt version: 2.9.8 293s autopkgtest [10:37:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 294s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 294s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 294s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 294s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 295s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 295s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 295s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 295s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 295s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 295s Fetched 1794 kB in 1s (1883 kB/s) 295s Reading package lists... 297s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Calculating upgrade... 299s The following NEW packages will be installed: 299s python3.13-gdbm 299s The following packages will be upgraded: 299s libpython3-stdlib python3 python3-gdbm python3-minimal 299s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 299s Need to get 101 kB of archives. 299s After this operation, 141 kB of additional disk space will be used. 299s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 299s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 299s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 299s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 299s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 300s Fetched 101 kB in 0s (269 kB/s) 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 300s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 300s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 300s Setting up python3-minimal (3.12.7-1) ... 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 300s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 300s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 300s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 300s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 300s Selecting previously unselected package python3.13-gdbm. 300s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 300s Unpacking python3.13-gdbm (3.13.0-2) ... 301s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 301s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 301s Setting up python3.13-gdbm (3.13.0-2) ... 301s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 301s Setting up python3 (3.12.7-1) ... 301s Setting up python3-gdbm:arm64 (3.12.7-1) ... 301s Processing triggers for man-db (2.12.1-3) ... 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 303s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 303s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 303s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 303s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 304s Reading package lists... 304s Reading package lists... 305s Building dependency tree... 305s Reading state information... 305s Calculating upgrade... 306s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 306s Reading package lists... 306s Building dependency tree... 306s Reading state information... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 313s Reading package lists... 313s Building dependency tree... 314s Reading state information... 314s Starting pkgProblemResolver with broken count: 0 314s Starting 2 pkgProblemResolver with broken count: 0 314s Done 314s The following additional packages will be installed: 314s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 314s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 314s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 314s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 314s libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6 314s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 314s python3-all python3-bcbio-gff python3-biopython python3-cairo 314s python3-freetype python3-numpy python3-pil python3-reportlab 314s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 314s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 314s Suggested packages: 314s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 314s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 314s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 314s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 314s gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 314s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 314s rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc 314s debhelper 314s Recommended packages: 314s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 314s The following NEW packages will be installed: 314s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 314s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 314s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 314s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 314s libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib libraqm0 314s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 314s libxcb-shm0 libxrender1 python3-all python3-bcbio-gff python3-biopython 314s python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab 314s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 314s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 315s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 315s Need to get 32.1 MB/32.1 MB of archives. 315s After this operation, 106 MB of additional disk space will be used. 315s Get:1 /tmp/autopkgtest.e0AcsO/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 315s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 315s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 316s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 316s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 316s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 316s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 316s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 316s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 316s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 316s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 317s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 317s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 317s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 317s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 317s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 317s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 317s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 317s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 317s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 318s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 318s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 318s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 318s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 318s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 318s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 318s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 318s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 318s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 318s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 318s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 318s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 318s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 318s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 318s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 318s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 318s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 318s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 318s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 318s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 318s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 318s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 318s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 318s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2 [121 kB] 318s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 318s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 318s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 318s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 318s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 318s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4 [1689 kB] 318s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 318s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bcbio-gff all 0.7.1-2 [33.9 kB] 319s Fetched 32.1 MB in 4s (8506 kB/s) 319s Selecting previously unselected package libpython3.13-minimal:arm64. 319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 319s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 319s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 319s Selecting previously unselected package python3.13-minimal. 319s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 319s Unpacking python3.13-minimal (3.13.0-2) ... 319s Selecting previously unselected package sgml-base. 319s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 319s Unpacking sgml-base (1.31) ... 319s Selecting previously unselected package fonts-dejavu-mono. 319s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 319s Unpacking fonts-dejavu-mono (2.37-8) ... 319s Selecting previously unselected package fonts-dejavu-core. 319s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 319s Unpacking fonts-dejavu-core (2.37-8) ... 319s Selecting previously unselected package libfontenc1:arm64. 319s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 319s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 319s Selecting previously unselected package x11-common. 319s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 319s Unpacking x11-common (1:7.7+23ubuntu3) ... 319s Selecting previously unselected package xfonts-encodings. 319s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 319s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 319s Selecting previously unselected package xfonts-utils. 319s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_arm64.deb ... 319s Unpacking xfonts-utils (1:7.7+7) ... 319s Selecting previously unselected package fonts-urw-base35. 319s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 319s Unpacking fonts-urw-base35 (20200910-8) ... 319s Selecting previously unselected package fontconfig-config. 319s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 320s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 320s Selecting previously unselected package libblas3:arm64. 320s Preparing to unpack .../11-libblas3_3.12.0-3build2_arm64.deb ... 320s Unpacking libblas3:arm64 (3.12.0-3build2) ... 320s Selecting previously unselected package libfontconfig1:arm64. 320s Preparing to unpack .../12-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 320s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 320s Selecting previously unselected package libpixman-1-0:arm64. 320s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_arm64.deb ... 320s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 320s Selecting previously unselected package libxcb-render0:arm64. 320s Preparing to unpack .../14-libxcb-render0_1.17.0-2_arm64.deb ... 320s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 320s Selecting previously unselected package libxcb-shm0:arm64. 320s Preparing to unpack .../15-libxcb-shm0_1.17.0-2_arm64.deb ... 320s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 320s Selecting previously unselected package libxrender1:arm64. 320s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 320s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 320s Selecting previously unselected package libcairo2:arm64. 320s Preparing to unpack .../17-libcairo2_1.18.2-2_arm64.deb ... 320s Unpacking libcairo2:arm64 (1.18.2-2) ... 320s Selecting previously unselected package libdeflate0:arm64. 320s Preparing to unpack .../18-libdeflate0_1.22-1_arm64.deb ... 320s Unpacking libdeflate0:arm64 (1.22-1) ... 320s Selecting previously unselected package libgfortran5:arm64. 320s Preparing to unpack .../19-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 320s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 320s Selecting previously unselected package libgomp1:arm64. 320s Preparing to unpack .../20-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 320s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 320s Selecting previously unselected package libgraphite2-3:arm64. 320s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 320s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 320s Selecting previously unselected package libharfbuzz0b:arm64. 320s Preparing to unpack .../22-libharfbuzz0b_10.0.1-1_arm64.deb ... 320s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 320s Selecting previously unselected package libimagequant0:arm64. 320s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 320s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 320s Selecting previously unselected package libjpeg-turbo8:arm64. 320s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 320s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 320s Selecting previously unselected package libjpeg8:arm64. 320s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 320s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 320s Selecting previously unselected package liblapack3:arm64. 320s Preparing to unpack .../26-liblapack3_3.12.0-3build2_arm64.deb ... 320s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 320s Selecting previously unselected package liblcms2-2:arm64. 320s Preparing to unpack .../27-liblcms2-2_2.16-2_arm64.deb ... 320s Unpacking liblcms2-2:arm64 (2.16-2) ... 320s Selecting previously unselected package liblerc4:arm64. 320s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 320s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 320s Selecting previously unselected package libpython3.13-stdlib:arm64. 320s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 320s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 321s Selecting previously unselected package libraqm0:arm64. 321s Preparing to unpack .../30-libraqm0_0.10.1-1build1_arm64.deb ... 321s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 321s Selecting previously unselected package libsharpyuv0:arm64. 321s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_arm64.deb ... 321s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 321s Selecting previously unselected package libjbig0:arm64. 321s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 321s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 321s Selecting previously unselected package libwebp7:arm64. 321s Preparing to unpack .../33-libwebp7_1.4.0-0.1_arm64.deb ... 321s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 321s Selecting previously unselected package libtiff6:arm64. 321s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 321s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 321s Selecting previously unselected package libwebpdemux2:arm64. 321s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_arm64.deb ... 321s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 321s Selecting previously unselected package libwebpmux3:arm64. 321s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_arm64.deb ... 321s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 321s Selecting previously unselected package python3.13. 321s Preparing to unpack .../37-python3.13_3.13.0-2_arm64.deb ... 321s Unpacking python3.13 (3.13.0-2) ... 321s Selecting previously unselected package python3-all. 321s Preparing to unpack .../38-python3-all_3.12.7-1_arm64.deb ... 321s Unpacking python3-all (3.12.7-1) ... 321s Selecting previously unselected package python3-numpy. 321s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 321s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 321s Selecting previously unselected package libopenjp2-7:arm64. 321s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 321s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 321s Selecting previously unselected package python3-pil:arm64. 321s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 321s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 321s Selecting previously unselected package python3-cairo. 321s Preparing to unpack .../42-python3-cairo_1.26.1-2_arm64.deb ... 321s Unpacking python3-cairo (1.26.1-2) ... 321s Selecting previously unselected package python3-freetype. 321s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 321s Unpacking python3-freetype (2.5.1-1) ... 321s Selecting previously unselected package python3-rlpycairo. 322s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 322s Unpacking python3-rlpycairo (0.3.0-3) ... 322s Selecting previously unselected package python3-reportlab. 322s Preparing to unpack .../45-python3-reportlab_4.2.5-1_all.deb ... 322s Unpacking python3-reportlab (4.2.5-1) ... 322s Selecting previously unselected package xml-core. 322s Preparing to unpack .../46-xml-core_0.19_all.deb ... 322s Unpacking xml-core (0.19) ... 322s Selecting previously unselected package w3c-sgml-lib. 322s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 322s Unpacking w3c-sgml-lib (1.3-3) ... 322s Selecting previously unselected package python3-biopython. 322s Preparing to unpack .../48-python3-biopython_1.84+dfsg-4_arm64.deb ... 322s Unpacking python3-biopython (1.84+dfsg-4) ... 322s Selecting previously unselected package python3-six. 322s Preparing to unpack .../49-python3-six_1.16.0-7_all.deb ... 322s Unpacking python3-six (1.16.0-7) ... 322s Selecting previously unselected package python3-bcbio-gff. 322s Preparing to unpack .../50-python3-bcbio-gff_0.7.1-2_all.deb ... 322s Unpacking python3-bcbio-gff (0.7.1-2) ... 322s Selecting previously unselected package autopkgtest-satdep. 322s Preparing to unpack .../51-2-autopkgtest-satdep.deb ... 322s Unpacking autopkgtest-satdep (0) ... 322s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 322s Setting up liblcms2-2:arm64 (2.16-2) ... 322s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 322s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 322s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 322s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 322s Setting up libxcb-render0:arm64 (1.17.0-2) ... 322s Setting up x11-common (1:7.7+23ubuntu3) ... 322s Setting up libdeflate0:arm64 (1.22-1) ... 322s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 322s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 322s Setting up python3-freetype (2.5.1-1) ... 323s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 323s Setting up python3-six (1.16.0-7) ... 323s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 323s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 323s Setting up libblas3:arm64 (3.12.0-3build2) ... 323s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 323s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 323s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 323s Setting up fonts-dejavu-mono (2.37-8) ... 323s Setting up fonts-dejavu-core (2.37-8) ... 323s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 323s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 323s Setting up libwebp7:arm64 (1.4.0-0.1) ... 323s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 323s Setting up python3.13-minimal (3.13.0-2) ... 324s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 324s Setting up sgml-base (1.31) ... 324s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 324s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 324s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 324s Setting up liblapack3:arm64 (3.12.0-3build2) ... 324s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 324s Setting up python3.13 (3.13.0-2) ... 325s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 325s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 325s Setting up python3-all (3.12.7-1) ... 325s Setting up xfonts-utils (1:7.7+7) ... 325s Setting up libraqm0:arm64 (0.10.1-1build1) ... 325s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 330s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 330s Setting up xml-core (0.19) ... 330s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 330s Setting up fonts-urw-base35 (20200910-8) ... 330s Setting up libcairo2:arm64 (1.18.2-2) ... 330s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 331s Setting up python3-cairo (1.26.1-2) ... 331s Setting up python3-rlpycairo (0.3.0-3) ... 331s Setting up python3-reportlab (4.2.5-1) ... 333s Processing triggers for libc-bin (2.40-1ubuntu3) ... 333s Processing triggers for systemd (256.5-2ubuntu4) ... 333s Processing triggers for man-db (2.12.1-3) ... 335s Processing triggers for sgml-base (1.31) ... 335s Setting up w3c-sgml-lib (1.3-3) ... 362s Setting up python3-biopython (1.84+dfsg-4) ... 365s Setting up python3-bcbio-gff (0.7.1-2) ... 365s Setting up autopkgtest-satdep (0) ... 369s (Reading database ... 83936 files and directories currently installed.) 369s Removing autopkgtest-satdep (0) ... 371s autopkgtest [10:39:06]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import BCBio.GFF; print(BCBio.GFF)" ; done 371s autopkgtest [10:39:06]: test autodep8-python3: [----------------------- 371s Testing with python3.13: 371s Traceback (most recent call last): 371s File "", line 1, in 371s import BCBio.GFF; print(BCBio.GFF) 371s ^^^^^^^^^^^^^^^^ 371s File "/usr/lib/python3/dist-packages/BCBio/GFF/__init__.py", line 3, in 371s from BCBio.GFF.GFFParser import GFFParser, DiscoGFFParser, GFFExaminer, parse, parse_simple 371s File "/usr/lib/python3/dist-packages/BCBio/GFF/GFFParser.py", line 44, in 371s from Bio import SeqIO 371s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 371s from Bio.SeqIO import TwoBitIO 371s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 371s raise MissingPythonDependencyError( 371s ...<2 lines>... 371s ) from None 371s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 371s autopkgtest [10:39:06]: test autodep8-python3: -----------------------] 372s autopkgtest [10:39:07]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 372s autodep8-python3 FAIL non-zero exit status 1 372s autopkgtest [10:39:07]: @@@@@@@@@@@@@@@@@@@@ summary 372s run-unit-test FAIL non-zero exit status 1 372s autodep8-python3 FAIL non-zero exit status 1 392s nova [W] Skipping flock in bos03-arm64 392s Creating nova instance adt-plucky-arm64-python-bcbio-gff-20241113-101342-juju-7f2275-prod-proposed-migration-environment-20-7df7069c-bb03-478a-af15-09c308f51ece from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)... 392s nova [W] Skipping flock in bos03-arm64 392s Creating nova instance adt-plucky-arm64-python-bcbio-gff-20241113-101342-juju-7f2275-prod-proposed-migration-environment-20-7df7069c-bb03-478a-af15-09c308f51ece from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...