0s autopkgtest [12:16:54]: starting date and time: 2024-11-01 12:16:54+0000 0s autopkgtest [12:16:54]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:16:54]: host juju-7f2275-prod-proposed-migration-environment-14; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9i0o0kkl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-dateutil --apt-upgrade pynwb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-dateutil/2.9.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-14@bos03-arm64-9.secgroup --name adt-plucky-arm64-pynwb-20241101-121654-juju-7f2275-prod-proposed-migration-environment-14-b435086c-218b-4e6a-8bca-d12dc91e7e80 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-14 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [12:18:03]: testbed dpkg architecture: arm64 69s autopkgtest [12:18:03]: testbed apt version: 2.9.8 69s autopkgtest [12:18:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 70s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [3097 kB] 71s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [51.2 kB] 71s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [196 kB] 71s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 71s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [248 kB] 71s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 71s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [2082 kB] 72s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [39.5 kB] 72s Fetched 5844 kB in 2s (2978 kB/s) 72s Reading package lists... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s Calculating upgrade... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 79s Reading package lists... 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [12:18:19]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 85s autopkgtest [12:18:19]: @@@@@@@@@@@@@@@@@@@@ apt-source pynwb 87s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pynwb 2.5.0-1 (dsc) [2156 B] 87s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pynwb 2.5.0-1 (tar) [621 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pynwb 2.5.0-1 (diff) [6328 B] 88s gpgv: Signature made Fri Dec 22 15:42:20 2023 UTC 88s gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./pynwb_2.5.0-1.dsc: no acceptable signature found 88s autopkgtest [12:18:22]: testing package pynwb version 2.5.0-1 88s autopkgtest [12:18:22]: build not needed 89s autopkgtest [12:18:23]: test autodep8-python3: preparing testbed 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Starting pkgProblemResolver with broken count: 0 93s Starting 2 pkgProblemResolver with broken count: 0 93s Done 94s The following additional packages will be installed: 94s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 94s liblbfgsb0 liblzf1 libsz2 python3-all python3-dateutil python3-decorator 94s python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas 94s python3-pandas-lib python3-pynwb python3-ruamel.yaml 94s python3-ruamel.yaml.clib python3-scipy python3-tz 94s Suggested packages: 94s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 94s python-pandas-doc python3-statsmodels python-scipy-doc 94s Recommended packages: 94s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 94s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 94s g++ | c++-compiler python3-pil 94s The following NEW packages will be installed: 94s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 94s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libsz2 python3-all 94s python3-dateutil python3-decorator python3-h5py python3-h5py-serial 94s python3-hdmf python3-numpy python3-pandas python3-pandas-lib python3-pynwb 94s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy python3-tz 94s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 33.3 MB/33.3 MB of archives. 94s After this operation, 150 MB of additional disk space will be used. 94s Get:1 /tmp/autopkgtest.ujO9Be/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 94s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-7ubuntu1 [438 kB] 94s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 94s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 95s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 95s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 95s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 95s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 95s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 95s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 95s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 95s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 96s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 96s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 96s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 96s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.2+dfsg-4 [4189 kB] 96s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 96s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-3 [16.3 MB] 97s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-2 [129 kB] 97s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 97s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmf all 3.11.0-2 [270 kB] 97s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pynwb all 2.5.0-1 [109 kB] 98s Fetched 33.3 MB in 3s (10.1 MB/s) 98s Selecting previously unselected package libaec0:arm64. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 98s Preparing to unpack .../00-libaec0_1.1.3-1_arm64.deb ... 98s Unpacking libaec0:arm64 (1.1.3-1) ... 98s Selecting previously unselected package libblas3:arm64. 98s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ... 98s Unpacking libblas3:arm64 (3.12.0-3build2) ... 98s Selecting previously unselected package libgfortran5:arm64. 98s Preparing to unpack .../02-libgfortran5_14.2.0-7ubuntu1_arm64.deb ... 98s Unpacking libgfortran5:arm64 (14.2.0-7ubuntu1) ... 98s Selecting previously unselected package libsz2:arm64. 98s Preparing to unpack .../03-libsz2_1.1.3-1_arm64.deb ... 98s Unpacking libsz2:arm64 (1.1.3-1) ... 98s Selecting previously unselected package libhdf5-103-1t64:arm64. 98s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 98s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 98s Selecting previously unselected package libhdf5-hl-100t64:arm64. 98s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 98s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 98s Selecting previously unselected package liblapack3:arm64. 98s Preparing to unpack .../06-liblapack3_3.12.0-3build2_arm64.deb ... 98s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 98s Selecting previously unselected package liblbfgsb0:arm64. 98s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 98s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 98s Selecting previously unselected package liblzf1:arm64. 98s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ... 98s Unpacking liblzf1:arm64 (3.6-4) ... 98s Selecting previously unselected package python3-all. 98s Preparing to unpack .../09-python3-all_3.12.6-0ubuntu1_arm64.deb ... 98s Unpacking python3-all (3.12.6-0ubuntu1) ... 98s Selecting previously unselected package python3-dateutil. 98s Preparing to unpack .../10-python3-dateutil_2.9.0-3_all.deb ... 98s Unpacking python3-dateutil (2.9.0-3) ... 98s Selecting previously unselected package python3-decorator. 98s Preparing to unpack .../11-python3-decorator_5.1.1-5_all.deb ... 98s Unpacking python3-decorator (5.1.1-5) ... 98s Selecting previously unselected package python3-numpy. 98s Preparing to unpack .../12-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 98s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 99s Selecting previously unselected package python3-h5py-serial. 99s Preparing to unpack .../13-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ... 99s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 99s Selecting previously unselected package python3-h5py. 99s Preparing to unpack .../14-python3-h5py_3.11.0-5ubuntu1_all.deb ... 99s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 99s Selecting previously unselected package python3-tz. 99s Preparing to unpack .../15-python3-tz_2024.1-2_all.deb ... 99s Unpacking python3-tz (2024.1-2) ... 99s Selecting previously unselected package python3-pandas-lib:arm64. 99s Preparing to unpack .../16-python3-pandas-lib_2.2.2+dfsg-4_arm64.deb ... 99s Unpacking python3-pandas-lib:arm64 (2.2.2+dfsg-4) ... 99s Selecting previously unselected package python3-pandas. 99s Preparing to unpack .../17-python3-pandas_2.2.2+dfsg-4_all.deb ... 99s Unpacking python3-pandas (2.2.2+dfsg-4) ... 99s Selecting previously unselected package python3-scipy. 99s Preparing to unpack .../18-python3-scipy_1.13.1-3_arm64.deb ... 99s Unpacking python3-scipy (1.13.1-3) ... 100s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 100s Preparing to unpack .../19-python3-ruamel.yaml.clib_0.2.8+ds-2_arm64.deb ... 100s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 100s Selecting previously unselected package python3-ruamel.yaml. 100s Preparing to unpack .../20-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 100s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 100s Selecting previously unselected package python3-hdmf. 100s Preparing to unpack .../21-python3-hdmf_3.11.0-2_all.deb ... 100s Unpacking python3-hdmf (3.11.0-2) ... 100s Selecting previously unselected package python3-pynwb. 100s Preparing to unpack .../22-python3-pynwb_2.5.0-1_all.deb ... 100s Unpacking python3-pynwb (2.5.0-1) ... 100s Selecting previously unselected package autopkgtest-satdep. 100s Preparing to unpack .../23-1-autopkgtest-satdep.deb ... 100s Unpacking autopkgtest-satdep (0) ... 100s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 100s Setting up python3-all (3.12.6-0ubuntu1) ... 100s Setting up libaec0:arm64 (1.1.3-1) ... 100s Setting up python3-tz (2024.1-2) ... 100s Setting up python3-decorator (5.1.1-5) ... 100s Setting up libblas3:arm64 (3.12.0-3build2) ... 100s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 100s Setting up liblzf1:arm64 (3.6-4) ... 100s Setting up libgfortran5:arm64 (14.2.0-7ubuntu1) ... 100s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 100s Setting up python3-dateutil (2.9.0-3) ... 101s Setting up libsz2:arm64 (1.1.3-1) ... 101s Setting up liblapack3:arm64 (3.12.0-3build2) ... 101s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 101s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 103s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 103s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 103s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 103s Setting up python3-scipy (1.13.1-3) ... 106s Setting up python3-pandas-lib:arm64 (2.2.2+dfsg-4) ... 106s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 107s Setting up python3-pandas (2.2.2+dfsg-4) ... 112s Setting up python3-h5py (3.11.0-5ubuntu1) ... 112s Setting up python3-hdmf (3.11.0-2) ... 113s /usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/conf.py:220: SyntaxWarning: invalid escape sequence '\s' 113s """ 113s Setting up python3-pynwb (2.5.0-1) ... 113s Setting up autopkgtest-satdep (0) ... 113s Processing triggers for man-db (2.12.1-3) ... 114s Processing triggers for libc-bin (2.40-1ubuntu3) ... 118s (Reading database ... 84258 files and directories currently installed.) 118s Removing autopkgtest-satdep (0) ... 119s autopkgtest [12:18:53]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pynwb; print(pynwb)" ; done 119s autopkgtest [12:18:53]: test autodep8-python3: [----------------------- 119s Testing with python3.12: 121s 121s autopkgtest [12:18:55]: test autodep8-python3: -----------------------] 122s autopkgtest [12:18:56]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 122s autodep8-python3 PASS (superficial) 122s autopkgtest [12:18:56]: @@@@@@@@@@@@@@@@@@@@ summary 122s autodep8-python3 PASS (superficial) 135s nova [W] Skipping flock in bos03-arm64 135s Creating nova instance adt-plucky-arm64-pynwb-20241101-121654-juju-7f2275-prod-proposed-migration-environment-14-b435086c-218b-4e6a-8bca-d12dc91e7e80 from image adt/ubuntu-plucky-arm64-server-20241101.img (UUID 520a937f-514a-4e80-b76b-163a8c247e3e)...