0s autopkgtest [01:17:36]: starting date and time: 2025-03-16 01:17:36+0000 0s autopkgtest [01:17:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:17:36]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f6r1d5u5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libpng1.6 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libpng1.6/1.6.47-1.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-9.secgroup --name adt-plucky-arm64-pymol-20250316-011736-juju-7f2275-prod-proposed-migration-environment-20-44751922-8b47-47f3-9b90-6f7c250293a2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 289s autopkgtest [01:22:25]: testbed dpkg architecture: arm64 289s autopkgtest [01:22:25]: testbed apt version: 2.9.33 290s autopkgtest [01:22:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 290s autopkgtest [01:22:26]: testbed release detected to be: None 292s autopkgtest [01:22:28]: updating testbed package index (apt update) 292s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 293s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 293s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 293s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 293s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 293s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 293s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 293s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 293s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 293s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 293s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 293s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 293s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 293s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 294s Fetched 972 kB in 1s (1045 kB/s) 295s Reading package lists... 295s Reading package lists... 296s Building dependency tree... 296s Reading state information... 296s Calculating upgrade... 297s Calculating upgrade... 297s The following packages will be upgraded: 297s pinentry-curses python3-jinja2 strace 297s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Need to get 647 kB of archives. 297s After this operation, 11.3 kB of additional disk space will be used. 297s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 298s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 298s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 298s Fetched 647 kB in 1s (936 kB/s) 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 299s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 299s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 299s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 299s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 299s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 299s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 299s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 299s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 299s Setting up strace (6.13+ds-1ubuntu1) ... 299s Processing triggers for man-db (2.13.0-1) ... 300s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Solving dependencies... 302s The following packages will be REMOVED: 302s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 302s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 302s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 302s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 303s 0 upgraded, 0 newly installed, 11 to remove and 1 not upgraded. 303s After this operation, 267 MB disk space will be freed. 303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 303s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 303s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 303s Removing libpython3.12t64:arm64 (3.12.9-1) ... 303s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 303s Removing libnsl2:arm64 (1.3.0-3build3) ... 303s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 303s Removing libunwind8:arm64 (1.6.2-3.1) ... 303s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 303s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 305s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 306s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 306s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 306s /etc/kernel/postrm.d/initramfs-tools: 306s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 306s /etc/kernel/postrm.d/zz-flash-kernel: 306s flash-kernel: Kernel 6.11.0-8-generic has been removed. 306s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 306s /etc/kernel/postrm.d/zz-update-grub: 306s Sourcing file `/etc/default/grub' 306s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 306s Generating grub configuration file ... 307s Found linux image: /boot/vmlinuz-6.14.0-10-generic 307s Found initrd image: /boot/initrd.img-6.14.0-10-generic 307s Warning: os-prober will not be executed to detect other bootable partitions. 307s Systems on them will not be added to the GRUB boot configuration. 307s Check GRUB_DISABLE_OS_PROBER documentation entry. 307s Adding boot menu entry for UEFI Firmware Settings ... 307s done 307s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 307s Processing triggers for libc-bin (2.41-1ubuntu1) ... 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 307s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 308s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 308s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 308s autopkgtest [01:22:44]: upgrading testbed (apt dist-upgrade and autopurge) 308s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 309s Starting 2 pkgProblemResolver with broken count: 0 309s Done 310s Entering ResolveByKeep 310s 311s Calculating upgrade... 311s The following packages will be upgraded: 311s libpng16-16t64 311s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s Need to get 186 kB of archives. 311s After this operation, 0 B of additional disk space will be used. 311s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpng16-16t64 arm64 1.6.47-1.1 [186 kB] 312s Fetched 186 kB in 0s (417 kB/s) 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 312s Preparing to unpack .../libpng16-16t64_1.6.47-1.1_arm64.deb ... 312s Unpacking libpng16-16t64:arm64 (1.6.47-1.1) over (1.6.47-1) ... 312s Setting up libpng16-16t64:arm64 (1.6.47-1.1) ... 312s Processing triggers for libc-bin (2.41-1ubuntu1) ... 312s Reading package lists... 313s Building dependency tree... 313s Reading state information... 314s Starting pkgProblemResolver with broken count: 0 314s Starting 2 pkgProblemResolver with broken count: 0 314s Done 315s Solving dependencies... 316s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 316s autopkgtest [01:22:52]: rebooting testbed after setup commands that affected boot 339s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 346s autopkgtest [01:23:22]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 348s autopkgtest [01:23:24]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 358s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (dsc) [2324 B] 358s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (tar) [22.0 MB] 358s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (diff) [57.8 kB] 359s gpgv: Signature made Tue Mar 4 18:06:31 2025 UTC 359s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 359s gpgv: Can't check signature: No public key 359s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3build2.dsc: no acceptable signature found 360s autopkgtest [01:23:36]: testing package pymol version 3.0.0+dfsg-3build2 361s autopkgtest [01:23:37]: build not needed 365s autopkgtest [01:23:41]: test command1: preparing testbed 365s Reading package lists... 365s Building dependency tree... 365s Reading state information... 366s Starting pkgProblemResolver with broken count: 0 366s Starting 2 pkgProblemResolver with broken count: 0 366s Done 368s The following NEW packages will be installed: 368s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 368s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 368s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libgbm1 368s libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa libglvnd0 368s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 368s libhdf5-hl-310 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 368s liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 libopengl0 libpcre2-16-0 368s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 368s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 368s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 368s libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 368s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 368s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 368s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 368s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxkbcommon-x11-0 libxrender1 368s libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 368s python3-legacy-cgi python3-numpy python3-numpy-dev python3-opengl 368s python3-pymol python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip 368s x11-common 368s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 368s Need to get 45.3 MB of archives. 368s After this operation, 183 MB of additional disk space will be used. 368s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 369s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 369s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 369s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 370s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 371s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 372s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 372s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 372s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 372s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 372s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 372s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-16ubuntu1 [30.9 kB] 372s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-16ubuntu1 [22.9 kB] 372s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-16ubuntu1 [26.9 kB] 372s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.11-0ubuntu2 [274 kB] 372s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 372s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 372s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 372s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 372s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 372s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 372s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 372s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 372s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 372s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 25.0.1-2ubuntu1 [9450 kB] 375s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 25.0.1-2ubuntu1 [33.7 kB] 375s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.1-3 [27.0 kB] 375s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 375s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 25.0.1-2ubuntu1 [122 kB] 375s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 375s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 25.0.1-2ubuntu1 [34.5 kB] 375s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 375s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 375s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 375s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 25.0.1-2ubuntu1 [151 kB] 375s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 375s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 375s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 375s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 375s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 375s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 376s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 376s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 376s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 376s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 376s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 376s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.14.0-1 [103 kB] 376s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.14.0-1 [26.7 kB] 376s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.27.1-1 [23.5 kB] 376s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 376s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.27.1-1 [136 kB] 376s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 376s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 376s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 376s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 376s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 376s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-4ubuntu1 [1999 kB] 377s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4ubuntu1 [222 kB] 377s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 377s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-4ubuntu1 [735 kB] 377s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 377s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 377s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 377s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 377s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 377s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 377s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 377s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 377s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 377s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 378s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 378s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 378s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 378s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4ubuntu1 [3680 kB] 379s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4ubuntu1 [2568 kB] 380s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-4ubuntu1 [124 kB] 380s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-6build1 [2840 kB] 380s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-4ubuntu1 [123 kB] 380s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-6build1 [165 kB] 381s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-4ubuntu1 [149 kB] 381s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-4ubuntu1 [209 kB] 381s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-4ubuntu1 [144 kB] 381s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-legacy-cgi all 2.6.2-1 [16.6 kB] 381s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 381s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB] 381s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 381s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.17.0-1build1 [67.6 kB] 381s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-2 [2580 kB] 382s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-2 [119 kB] 382s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 382s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-3build2 [3961 kB] 383s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-3build2 [126 kB] 384s Fetched 45.3 MB in 15s (2970 kB/s) 384s Selecting previously unselected package python3-numpy-dev:arm64. 384s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 384s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 384s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 384s Selecting previously unselected package libblas3:arm64. 384s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 384s Unpacking libblas3:arm64 (3.12.1-2) ... 384s Selecting previously unselected package libgfortran5:arm64. 384s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 384s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 384s Selecting previously unselected package liblapack3:arm64. 384s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 384s Unpacking liblapack3:arm64 (3.12.1-2) ... 384s Selecting previously unselected package python3-numpy. 384s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 384s Unpacking python3-numpy (1:2.2.3+ds-5) ... 385s Selecting previously unselected package fonts-dejavu-mono. 385s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 385s Unpacking fonts-dejavu-mono (2.37-8) ... 385s Selecting previously unselected package fonts-dejavu-core. 385s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 385s Unpacking fonts-dejavu-core (2.37-8) ... 385s Selecting previously unselected package fontconfig-config. 385s Preparing to unpack .../07-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 385s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 385s Selecting previously unselected package libfontconfig1:arm64. 385s Preparing to unpack .../08-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 385s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 385s Selecting previously unselected package fontconfig. 385s Preparing to unpack .../09-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 385s Unpacking fontconfig (2.15.0-2ubuntu1) ... 385s Selecting previously unselected package libaec0:arm64. 385s Preparing to unpack .../10-libaec0_1.1.3-1_arm64.deb ... 385s Unpacking libaec0:arm64 (1.1.3-1) ... 385s Selecting previously unselected package libavahi-common-data:arm64. 385s Preparing to unpack .../11-libavahi-common-data_0.8-16ubuntu1_arm64.deb ... 385s Unpacking libavahi-common-data:arm64 (0.8-16ubuntu1) ... 386s Selecting previously unselected package libavahi-common3:arm64. 386s Preparing to unpack .../12-libavahi-common3_0.8-16ubuntu1_arm64.deb ... 386s Unpacking libavahi-common3:arm64 (0.8-16ubuntu1) ... 386s Selecting previously unselected package libavahi-client3:arm64. 386s Preparing to unpack .../13-libavahi-client3_0.8-16ubuntu1_arm64.deb ... 386s Unpacking libavahi-client3:arm64 (0.8-16ubuntu1) ... 386s Selecting previously unselected package libcups2t64:arm64. 386s Preparing to unpack .../14-libcups2t64_2.4.11-0ubuntu2_arm64.deb ... 386s Unpacking libcups2t64:arm64 (2.4.11-0ubuntu2) ... 386s Selecting previously unselected package libdouble-conversion3:arm64. 386s Preparing to unpack .../15-libdouble-conversion3_3.3.1-1_arm64.deb ... 386s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 386s Selecting previously unselected package libwayland-server0:arm64. 386s Preparing to unpack .../16-libwayland-server0_1.23.1-3_arm64.deb ... 386s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 386s Selecting previously unselected package libx11-xcb1:arm64. 386s Preparing to unpack .../17-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 386s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 386s Selecting previously unselected package libxcb-dri3-0:arm64. 386s Preparing to unpack .../18-libxcb-dri3-0_1.17.0-2_arm64.deb ... 386s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 386s Selecting previously unselected package libxcb-present0:arm64. 386s Preparing to unpack .../19-libxcb-present0_1.17.0-2_arm64.deb ... 386s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 386s Selecting previously unselected package libxcb-randr0:arm64. 386s Preparing to unpack .../20-libxcb-randr0_1.17.0-2_arm64.deb ... 386s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 386s Selecting previously unselected package libxcb-sync1:arm64. 386s Preparing to unpack .../21-libxcb-sync1_1.17.0-2_arm64.deb ... 386s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 386s Selecting previously unselected package libxcb-xfixes0:arm64. 386s Preparing to unpack .../22-libxcb-xfixes0_1.17.0-2_arm64.deb ... 386s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 386s Selecting previously unselected package libxshmfence1:arm64. 386s Preparing to unpack .../23-libxshmfence1_1.3-1build5_arm64.deb ... 386s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 386s Selecting previously unselected package mesa-libgallium:arm64. 386s Preparing to unpack .../24-mesa-libgallium_25.0.1-2ubuntu1_arm64.deb ... 386s Unpacking mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 387s Selecting previously unselected package libgbm1:arm64. 387s Preparing to unpack .../25-libgbm1_25.0.1-2ubuntu1_arm64.deb ... 387s Unpacking libgbm1:arm64 (25.0.1-2ubuntu1) ... 387s Selecting previously unselected package libwayland-client0:arm64. 387s Preparing to unpack .../26-libwayland-client0_1.23.1-3_arm64.deb ... 387s Unpacking libwayland-client0:arm64 (1.23.1-3) ... 387s Selecting previously unselected package libxcb-shm0:arm64. 387s Preparing to unpack .../27-libxcb-shm0_1.17.0-2_arm64.deb ... 387s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 387s Selecting previously unselected package libegl-mesa0:arm64. 387s Preparing to unpack .../28-libegl-mesa0_25.0.1-2ubuntu1_arm64.deb ... 387s Unpacking libegl-mesa0:arm64 (25.0.1-2ubuntu1) ... 387s Selecting previously unselected package libvulkan1:arm64. 387s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_arm64.deb ... 387s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 387s Selecting previously unselected package libgl1-mesa-dri:arm64. 387s Preparing to unpack .../30-libgl1-mesa-dri_25.0.1-2ubuntu1_arm64.deb ... 387s Unpacking libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 387s Selecting previously unselected package libglvnd0:arm64. 387s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_arm64.deb ... 387s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 387s Selecting previously unselected package libxcb-glx0:arm64. 387s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_arm64.deb ... 387s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 387s Selecting previously unselected package libxxf86vm1:arm64. 387s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 387s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 387s Selecting previously unselected package libglx-mesa0:arm64. 387s Preparing to unpack .../34-libglx-mesa0_25.0.1-2ubuntu1_arm64.deb ... 387s Unpacking libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 387s Selecting previously unselected package libglx0:arm64. 387s Preparing to unpack .../35-libglx0_1.7.0-1build1_arm64.deb ... 387s Unpacking libglx0:arm64 (1.7.0-1build1) ... 387s Selecting previously unselected package libgl1:arm64. 387s Preparing to unpack .../36-libgl1_1.7.0-1build1_arm64.deb ... 387s Unpacking libgl1:arm64 (1.7.0-1build1) ... 387s Selecting previously unselected package libglew2.2:arm64. 387s Preparing to unpack .../37-libglew2.2_2.2.0-4build1_arm64.deb ... 387s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 387s Selecting previously unselected package libgomp1:arm64. 387s Preparing to unpack .../38-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 387s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 387s Selecting previously unselected package libgraphite2-3:arm64. 387s Preparing to unpack .../39-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 387s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 387s Selecting previously unselected package libharfbuzz0b:arm64. 387s Preparing to unpack .../40-libharfbuzz0b_10.2.0-1_arm64.deb ... 387s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 387s Selecting previously unselected package libsz2:arm64. 387s Preparing to unpack .../41-libsz2_1.1.3-1_arm64.deb ... 387s Unpacking libsz2:arm64 (1.1.3-1) ... 387s Selecting previously unselected package libhdf5-310:arm64. 388s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_arm64.deb ... 388s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 388s Selecting previously unselected package libhdf5-hl-310:arm64. 388s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 388s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 388s Selecting previously unselected package x11-common. 388s Preparing to unpack .../44-x11-common_1%3a7.7+23ubuntu3_all.deb ... 388s Unpacking x11-common (1:7.7+23ubuntu3) ... 388s Selecting previously unselected package libice6:arm64. 388s Preparing to unpack .../45-libice6_2%3a1.1.1-1_arm64.deb ... 388s Unpacking libice6:arm64 (2:1.1.1-1) ... 388s Selecting previously unselected package libwacom-common. 388s Preparing to unpack .../46-libwacom-common_2.14.0-1_all.deb ... 388s Unpacking libwacom-common (2.14.0-1) ... 388s Selecting previously unselected package libwacom9:arm64. 388s Preparing to unpack .../47-libwacom9_2.14.0-1_arm64.deb ... 388s Unpacking libwacom9:arm64 (2.14.0-1) ... 388s Selecting previously unselected package libinput-bin. 388s Preparing to unpack .../48-libinput-bin_1.27.1-1_arm64.deb ... 388s Unpacking libinput-bin (1.27.1-1) ... 388s Selecting previously unselected package libmtdev1t64:arm64. 388s Preparing to unpack .../49-libmtdev1t64_1.1.7-1_arm64.deb ... 388s Unpacking libmtdev1t64:arm64 (1.1.7-1) ... 388s Selecting previously unselected package libinput10:arm64. 388s Preparing to unpack .../50-libinput10_1.27.1-1_arm64.deb ... 388s Unpacking libinput10:arm64 (1.27.1-1) ... 388s Selecting previously unselected package libjpeg-turbo8:arm64. 388s Preparing to unpack .../51-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 388s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 388s Selecting previously unselected package libjpeg8:arm64. 388s Preparing to unpack .../52-libjpeg8_8c-2ubuntu11_arm64.deb ... 388s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 388s Selecting previously unselected package libmd4c0:arm64. 388s Preparing to unpack .../53-libmd4c0_0.5.2-2_arm64.deb ... 388s Unpacking libmd4c0:arm64 (0.5.2-2) ... 388s Selecting previously unselected package libnetcdf22:arm64. 388s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 388s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 388s Selecting previously unselected package libpcre2-16-0:arm64. 388s Preparing to unpack .../55-libpcre2-16-0_10.45-1_arm64.deb ... 388s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 388s Selecting previously unselected package libqt5core5t64:arm64. 388s Preparing to unpack .../56-libqt5core5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 388s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 388s Selecting previously unselected package libqt5dbus5t64:arm64. 389s Preparing to unpack .../57-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 389s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 389s Selecting previously unselected package libegl1:arm64. 389s Preparing to unpack .../58-libegl1_1.7.0-1build1_arm64.deb ... 389s Unpacking libegl1:arm64 (1.7.0-1build1) ... 389s Selecting previously unselected package libqt5network5t64:arm64. 389s Preparing to unpack .../59-libqt5network5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 389s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 389s Selecting previously unselected package libsm6:arm64. 389s Preparing to unpack .../60-libsm6_2%3a1.2.4-1_arm64.deb ... 389s Unpacking libsm6:arm64 (2:1.2.4-1) ... 389s Selecting previously unselected package libxcb-icccm4:arm64. 389s Preparing to unpack .../61-libxcb-icccm4_0.4.2-1_arm64.deb ... 389s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 389s Selecting previously unselected package libxcb-util1:arm64. 389s Preparing to unpack .../62-libxcb-util1_0.4.1-1_arm64.deb ... 389s Unpacking libxcb-util1:arm64 (0.4.1-1) ... 389s Selecting previously unselected package libxcb-image0:arm64. 389s Preparing to unpack .../63-libxcb-image0_0.4.0-2build1_arm64.deb ... 389s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 389s Selecting previously unselected package libxcb-keysyms1:arm64. 389s Preparing to unpack .../64-libxcb-keysyms1_0.4.1-1_arm64.deb ... 389s Unpacking libxcb-keysyms1:arm64 (0.4.1-1) ... 389s Selecting previously unselected package libxcb-render0:arm64. 389s Preparing to unpack .../65-libxcb-render0_1.17.0-2_arm64.deb ... 389s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 389s Selecting previously unselected package libxcb-render-util0:arm64. 389s Preparing to unpack .../66-libxcb-render-util0_0.3.10-1_arm64.deb ... 389s Unpacking libxcb-render-util0:arm64 (0.3.10-1) ... 389s Selecting previously unselected package libxcb-shape0:arm64. 389s Preparing to unpack .../67-libxcb-shape0_1.17.0-2_arm64.deb ... 389s Unpacking libxcb-shape0:arm64 (1.17.0-2) ... 389s Selecting previously unselected package libxcb-xinerama0:arm64. 389s Preparing to unpack .../68-libxcb-xinerama0_1.17.0-2_arm64.deb ... 389s Unpacking libxcb-xinerama0:arm64 (1.17.0-2) ... 389s Selecting previously unselected package libxcb-xinput0:arm64. 389s Preparing to unpack .../69-libxcb-xinput0_1.17.0-2_arm64.deb ... 389s Unpacking libxcb-xinput0:arm64 (1.17.0-2) ... 389s Selecting previously unselected package libxcb-xkb1:arm64. 389s Preparing to unpack .../70-libxcb-xkb1_1.17.0-2_arm64.deb ... 389s Unpacking libxcb-xkb1:arm64 (1.17.0-2) ... 389s Selecting previously unselected package libxkbcommon-x11-0:arm64. 389s Preparing to unpack .../71-libxkbcommon-x11-0_1.7.0-2_arm64.deb ... 389s Unpacking libxkbcommon-x11-0:arm64 (1.7.0-2) ... 389s Selecting previously unselected package libxrender1:arm64. 389s Preparing to unpack .../72-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 389s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 389s Selecting previously unselected package libqt5gui5t64:arm64. 389s Preparing to unpack .../73-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 389s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5widgets5t64:arm64. 390s Preparing to unpack .../74-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5xml5t64:arm64. 390s Preparing to unpack .../75-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5designer5:arm64. 390s Preparing to unpack .../76-libqt5designer5_5.15.15-6build1_arm64.deb ... 390s Unpacking libqt5designer5:arm64 (5.15.15-6build1) ... 390s Selecting previously unselected package libqt5sql5t64:arm64. 390s Preparing to unpack .../77-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5help5:arm64. 390s Preparing to unpack .../78-libqt5help5_5.15.15-6build1_arm64.deb ... 390s Unpacking libqt5help5:arm64 (5.15.15-6build1) ... 390s Selecting previously unselected package libqt5opengl5t64:arm64. 390s Preparing to unpack .../79-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5opengl5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5printsupport5t64:arm64. 390s Preparing to unpack .../80-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package libqt5test5t64:arm64. 390s Preparing to unpack .../81-libqt5test5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 390s Unpacking libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 390s Selecting previously unselected package python3-legacy-cgi. 390s Preparing to unpack .../82-python3-legacy-cgi_2.6.2-1_all.deb ... 390s Unpacking python3-legacy-cgi (2.6.2-1) ... 390s Selecting previously unselected package libopengl0:arm64. 390s Preparing to unpack .../83-libopengl0_1.7.0-1build1_arm64.deb ... 390s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 390s Selecting previously unselected package libglu1-mesa:arm64. 390s Preparing to unpack .../84-libglu1-mesa_9.0.2-1.1build1_arm64.deb ... 390s Unpacking libglu1-mesa:arm64 (9.0.2-1.1build1) ... 390s Selecting previously unselected package python3-opengl. 390s Preparing to unpack .../85-python3-opengl_3.1.7+dfsg-1_all.deb ... 390s Unpacking python3-opengl (3.1.7+dfsg-1) ... 391s Selecting previously unselected package python3-pyqt5.sip. 391s Preparing to unpack .../86-python3-pyqt5.sip_12.17.0-1build1_arm64.deb ... 391s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 391s Selecting previously unselected package python3-pyqt5. 391s Preparing to unpack .../87-python3-pyqt5_5.15.11+dfsg-2_arm64.deb ... 391s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 391s Selecting previously unselected package python3-pyqt5.qtopengl. 391s Preparing to unpack .../88-python3-pyqt5.qtopengl_5.15.11+dfsg-2_arm64.deb ... 391s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 391s Selecting previously unselected package pymol-data. 391s Preparing to unpack .../89-pymol-data_3.0.0+dfsg-3build2_all.deb ... 391s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 391s Selecting previously unselected package python3-pymol. 391s Preparing to unpack .../90-python3-pymol_3.0.0+dfsg-3build2_arm64.deb ... 391s Unpacking python3-pymol (3.0.0+dfsg-3build2) ... 391s Selecting previously unselected package pymol. 391s Preparing to unpack .../91-pymol_3.0.0+dfsg-3build2_all.deb ... 391s Unpacking pymol (3.0.0+dfsg-3build2) ... 392s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 392s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 392s Setting up libwayland-server0:arm64 (1.23.1-3) ... 392s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 392s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 392s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 392s Setting up libxcb-xinput0:arm64 (1.17.0-2) ... 392s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 392s Setting up libxcb-render0:arm64 (1.17.0-2) ... 392s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 392s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 392s Setting up libxcb-keysyms1:arm64 (0.4.1-1) ... 392s Setting up libxcb-shape0:arm64 (1.17.0-2) ... 392s Setting up x11-common (1:7.7+23ubuntu3) ... 392s Setting up libxcb-render-util0:arm64 (0.3.10-1) ... 392s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 392s Setting up libxcb-icccm4:arm64 (0.4.2-1) ... 392s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 392s Setting up libpcre2-16-0:arm64 (10.45-1) ... 392s Setting up libaec0:arm64 (1.1.3-1) ... 392s Setting up libopengl0:arm64 (1.7.0-1build1) ... 392s Setting up libxcb-util1:arm64 (0.4.1-1) ... 392s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 392s Setting up libxcb-xkb1:arm64 (1.17.0-2) ... 392s Setting up libxcb-image0:arm64 (0.4.0-2build1) ... 392s Setting up libxcb-present0:arm64 (1.17.0-2) ... 392s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 392s Setting up libblas3:arm64 (3.12.1-2) ... 392s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 392s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ... 392s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 392s Setting up libavahi-common-data:arm64 (0.8-16ubuntu1) ... 392s Setting up pymol-data (3.0.0+dfsg-3build2) ... 392s Setting up libxkbcommon-x11-0:arm64 (1.7.0-2) ... 392s Setting up fonts-dejavu-mono (2.37-8) ... 392s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 392s Setting up fonts-dejavu-core (2.37-8) ... 392s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 392s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 392s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 392s Setting up python3-legacy-cgi (2.6.2-1) ... 392s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 392s Setting up libmtdev1t64:arm64 (1.1.7-1) ... 392s Setting up libxshmfence1:arm64 (1.3-1build5) ... 392s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 392s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 392s Setting up libmd4c0:arm64 (0.5.2-2) ... 392s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 392s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ... 392s Setting up libsz2:arm64 (1.1.3-1) ... 392s Setting up libwacom-common (2.14.0-1) ... 392s Setting up libwayland-client0:arm64 (1.23.1-3) ... 392s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 392s Setting up libice6:arm64 (2:1.1.1-1) ... 392s Setting up mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 392s Setting up liblapack3:arm64 (3.12.1-2) ... 392s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 392s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 392s Setting up libgbm1:arm64 (25.0.1-2ubuntu1) ... 392s Setting up libwacom9:arm64 (2.14.0-1) ... 392s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 393s Setting up libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 393s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 393s Setting up libavahi-common3:arm64 (0.8-16ubuntu1) ... 393s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 393s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 393s Setting up libinput-bin (1.27.1-1) ... 393s Setting up libegl-mesa0:arm64 (25.0.1-2ubuntu1) ... 393s Setting up python3-numpy (1:2.2.3+ds-5) ... 395s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 395s Setting up libegl1:arm64 (1.7.0-1build1) ... 395s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 395s Setting up libsm6:arm64 (2:1.2.4-1) ... 395s Setting up libavahi-client3:arm64 (0.8-16ubuntu1) ... 396s Setting up libinput10:arm64 (1.27.1-1) ... 396s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 396s Setting up fontconfig (2.15.0-2ubuntu1) ... 398s Regenerating fonts cache... done. 398s Setting up libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 398s Setting up libglx0:arm64 (1.7.0-1build1) ... 398s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 398s Setting up libgl1:arm64 (1.7.0-1build1) ... 398s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 398s Setting up libcups2t64:arm64 (2.4.11-0ubuntu2) ... 398s Setting up python3-opengl (3.1.7+dfsg-1) ... 398s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 398s |\ |\ 400s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 400s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 400s Setting up libqt5help5:arm64 (5.15.15-6build1) ... 400s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 400s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 400s Setting up libqt5designer5:arm64 (5.15.15-6build1) ... 400s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 400s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 400s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 401s Setting up pymol (3.0.0+dfsg-3build2) ... 401s Processing triggers for libc-bin (2.41-1ubuntu1) ... 401s Processing triggers for man-db (2.13.0-1) ... 402s Processing triggers for udev (257.3-1ubuntu3) ... 404s autopkgtest [01:24:20]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 404s autopkgtest [01:24:20]: test command1: [----------------------- 404s Search pymol scripts in /tmp/autopkgtest.JyEJKb/build.g2f/src/examples... 404s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/examples 404s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/chempy/generate_amber.py'... 405s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/chempy/generate_mmff.py'... 405s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/area_diff.pml'... 406s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/build_peptide.py'... 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/contact.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/dali.py 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/density.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/groel_es.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/multiclip_ray.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/packing.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/packsurf.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ref_frame.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ribosome.pml 406s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/scenes2movie.pml 407s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/seq_match_sele.pml'... 409s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ss_xfer.pml 409s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/symsph.py'... 410s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/brick01.py'... 410s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo01.py'... 410s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo02.py'... 414s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo03.py'... 417s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo04.py'... 418s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo05.py'... 418s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo06.py'... 421s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo07.py'... 421s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo08.py'... 422s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_3Dtext01.py'... 422s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_axes.py'... 422s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_label_hack.py'... 426s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_plane.py'... 426s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model01.py'... 427s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model02.py'... 427s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model03.py'... 431s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/click_ordered_list.py'... 431s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/count_molecules.py'... 431s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/extend_demo01.py'... 432s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl01.py'... 432s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl02.py'... 433s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl03.py'... 437s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/importing.py 437s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/link_demo.py'... 437s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/membrane.py'... 438s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/mutate01.pml'... 438s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/mutate02.py'... 440s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/my_ext_gui.py'... 441s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/particle01.py'... 441s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/particle02.py'... 442s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/pick_wiz.py'... 442s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/povray01.py 442s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/scenes_to_movie01.pml'... 443s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/sd_annotate.pml 443s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/sele_wiz.py'... 443s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/start_pymol.py 443s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/syncmol.py'... 444s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/tkwindow.py 444s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui01.py'... 444s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui02.py'... 444s /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 444s mo = re.search("molid\=([A-Z0-9]+)",self.path) 444s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/xmlrpc01.py 444s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/xmlrpc02.py'... 444s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_demo.py'... 445s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_viewer1.py'... 445s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_viewer2.py'... 445s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/chempy 445s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/chempy/generate_amber.py'... 446s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/chempy/generate_mmff.py'... 446s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook 446s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/area_diff.pml'... 447s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/build_peptide.py'... 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/contact.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/dali.py 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/density.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/groel_es.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/multiclip_ray.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/packing.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/packsurf.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ref_frame.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ribosome.pml 448s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/scenes2movie.pml 448s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/seq_match_sele.pml'... 449s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/ss_xfer.pml 449s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/cookbook/symsph.py'... 450s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel 450s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/brick01.py'... 450s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo01.py'... 451s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo02.py'... 454s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo03.py'... 458s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo04.py'... 458s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo05.py'... 458s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo06.py'... 460s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo07.py'... 460s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo08.py'... 460s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_3Dtext01.py'... 460s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_axes.py'... 461s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_label_hack.py'... 464s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/cgo_plane.py'... 465s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model01.py'... 465s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model02.py'... 466s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/chempy_model03.py'... 469s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/click_ordered_list.py'... 469s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/count_molecules.py'... 470s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/extend_demo01.py'... 470s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl01.py'... 471s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl02.py'... 472s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/gl03.py'... 476s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/importing.py 476s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/link_demo.py'... 476s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/membrane.py'... 477s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/mutate01.pml'... 477s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/mutate02.py'... 480s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/my_ext_gui.py'... 480s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/particle01.py'... 481s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/particle02.py'... 481s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/pick_wiz.py'... 482s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/povray01.py 482s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/scenes_to_movie01.pml'... 482s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/sd_annotate.pml 482s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/sele_wiz.py'... 483s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/start_pymol.py 483s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/syncmol.py'... 483s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/tkwindow.py 483s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui01.py'... 484s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui02.py'... 484s /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 484s mo = re.search("molid\=([A-Z0-9]+)",self.path) 484s Skip /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/xmlrpc01.py 484s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/devel/xmlrpc02.py'... 484s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching 484s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_demo.py'... 485s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_viewer1.py'... 485s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/examples/launching/launch_viewer2.py'... 486s autopkgtest [01:25:42]: test command1: -----------------------] 487s command1 PASS (superficial) 487s autopkgtest [01:25:43]: test command1: - - - - - - - - - - results - - - - - - - - - - 487s autopkgtest [01:25:43]: test command2: preparing testbed 487s Reading package lists... 488s Building dependency tree... 488s Reading state information... 488s Starting pkgProblemResolver with broken count: 0 488s Starting 2 pkgProblemResolver with broken count: 0 488s Done 489s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 490s autopkgtest [01:25:46]: test command2: sh debian/tests/call-pymol-scripts data/demo 490s autopkgtest [01:25:46]: test command2: [----------------------- 490s Search pymol scripts in /tmp/autopkgtest.JyEJKb/build.g2f/src/data/demo... 490s Processing new directory /tmp/autopkgtest.JyEJKb/build.g2f/src/data/demo 490s Run 'pymol -c /tmp/autopkgtest.JyEJKb/build.g2f/src/data/demo/cgo03.py'... 494s autopkgtest [01:25:50]: test command2: -----------------------] 494s command2 PASS (superficial) 494s autopkgtest [01:25:50]: test command2: - - - - - - - - - - results - - - - - - - - - - 495s autopkgtest [01:25:51]: test command3: preparing testbed 495s Reading package lists... 496s Building dependency tree... 496s Reading state information... 496s Starting pkgProblemResolver with broken count: 0 497s Starting 2 pkgProblemResolver with broken count: 0 497s Done 498s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 499s autopkgtest [01:25:55]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 499s autopkgtest [01:25:55]: test command3: [----------------------- 499s Search pymol scripts in /usr/share/pymol/examples... 499s Processing new directory /usr/share/pymol/examples 499s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 500s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 500s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 500s Skip /usr/share/pymol/examples/cookbook/contact.pml 500s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 500s Skip /usr/share/pymol/examples/cookbook/packing.pml 500s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 500s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 500s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 500s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 500s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 500s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 501s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 502s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 505s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 508s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 509s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 509s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 510s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 512s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 512s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 515s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 516s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 516s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 517s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 520s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 521s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 521s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 522s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 522s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 523s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 527s Skip /usr/share/pymol/examples/devel/importing.py 527s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 527s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 528s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 528s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 530s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 530s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 531s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 531s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 532s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 532s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 532s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 532s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 533s Skip /usr/share/pymol/examples/devel/tkwindow.py 533s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 533s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 534s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 534s mo = re.search("molid\=([A-Z0-9]+)",self.path) 534s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 534s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 534s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 534s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 535s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 535s Processing new directory /usr/share/pymol/examples/chempy 535s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 535s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 536s Processing new directory /usr/share/pymol/examples/cookbook 536s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 536s Skip /usr/share/pymol/examples/cookbook/contact.pml 536s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 536s Skip /usr/share/pymol/examples/cookbook/packing.pml 536s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 536s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 536s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 536s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 536s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 536s Processing new directory /usr/share/pymol/examples/devel 536s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 536s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 536s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 540s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 543s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 543s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 544s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 546s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 547s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 547s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 547s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 548s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 551s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 551s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 552s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 552s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 555s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 556s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 556s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 557s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 557s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 558s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 562s Skip /usr/share/pymol/examples/devel/importing.py 562s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 563s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 563s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 564s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 566s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 567s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 567s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 568s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 568s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 569s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 569s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 569s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 569s Skip /usr/share/pymol/examples/devel/tkwindow.py 569s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 570s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 570s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 570s mo = re.search("molid\=([A-Z0-9]+)",self.path) 570s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 570s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 571s Processing new directory /usr/share/pymol/examples/launching 571s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 571s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 572s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 572s autopkgtest [01:27:08]: test command3: -----------------------] 573s command3 PASS (superficial) 573s autopkgtest [01:27:09]: test command3: - - - - - - - - - - results - - - - - - - - - - 573s autopkgtest [01:27:09]: test command4: preparing testbed 573s Reading package lists... 574s Building dependency tree... 574s Reading state information... 575s Starting pkgProblemResolver with broken count: 0 575s Starting 2 pkgProblemResolver with broken count: 0 575s Done 577s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 578s autopkgtest [01:27:14]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 578s autopkgtest [01:27:14]: test command4: [----------------------- 578s Search pymol scripts in /usr/share/pymol/examples/cookbook... 578s Processing new directory /usr/share/pymol/examples/cookbook 578s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 579s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 582s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 582s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 584s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 631s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 633s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 633s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 634s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 635s autopkgtest [01:28:11]: test command4: -----------------------] 636s command4 PASS (superficial) 636s autopkgtest [01:28:12]: test command4: - - - - - - - - - - results - - - - - - - - - - 636s autopkgtest [01:28:12]: test command5: preparing testbed 637s Reading package lists... 637s Building dependency tree... 637s Reading state information... 637s Starting pkgProblemResolver with broken count: 0 637s Starting 2 pkgProblemResolver with broken count: 0 638s Done 638s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 639s autopkgtest [01:28:15]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 639s autopkgtest [01:28:15]: test command5: [----------------------- 640s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 640s Copyright (c) Schrodinger, LLC. 640s All Rights Reserved. 640s 640s Created by Warren L. DeLano, Ph.D. 640s 640s PyMOL is user-supported open-source software. Although some versions 640s are freely available, PyMOL is not in the public domain. 640s 640s If PyMOL is helpful in your work or study, then please volunteer 640s support for our ongoing efforts to create open and affordable scientific 640s software by purchasing a PyMOL Maintenance and/or Support subscription. 640s 640s More information can be found at "http://www.pymol.org". 640s 640s Enter "help" for a list of commands. 640s Enter "help " for information on a specific command. 640s 640s Hit ESC anytime to toggle between text and graphics. 640s 640s Setting: wizard_prompt_mode set to 3. 640s Detected 2 CPU cores. Enabled multithreaded rendering. 640s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 640s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 640s PyMOL>wizard annotation 640s PyMOL>set wizard_prompt_mode,3 640s PyMOL>load_annotated_sdf demo.sdf 640s HBA ['[1, 25, 26, 34]\n'] 640s HBD ['[20]\n'] 640s ACD_NUMBER ['MFCD02681585\n'] 640s SCORE ['-222.044\n'] 640s MOLID ['MFCD02681585\n'] 640s HBA ['[1, 21]\n'] 640s HBD ['[]\n'] 640s ACD_NUMBER ['MFCD01567969\n'] 640s SCORE ['-219.984\n'] 640s MOLID ['MFCD01567969\n'] 640s HBA ['[1, 24]\n'] 640s HBD ['[10, 22]\n'] 640s ACD_NUMBER ['MFCD00023789\n'] 640s SCORE ['-219.911\n'] 640s MOLID ['MFCD00023789\n'] 640s HBA ['[1, 11]\n'] 640s HBD ['[3]\n'] 640s ACD_NUMBER ['MFCD02579443\n'] 640s SCORE ['-219.769\n'] 640s MOLID ['MFCD02579443\n'] 640s HBA ['[1, 11]\n'] 640s HBD ['[9]\n'] 640s ACD_NUMBER ['MFCD02579410\n'] 640s SCORE ['-214.809\n'] 640s MOLID ['MFCD02579410\n'] 640s HBA ['[1, 20, 22, 27, 32]\n'] 640s HBD ['[10, 20]\n'] 640s ACD_NUMBER ['MFCD02579135\n'] 640s SCORE ['-213.630\n'] 640s MOLID ['MFCD02579135\n'] 640s HBA ['[1, 11, 14, 21]\n'] 640s HBD ['[]\n'] 640s ACD_NUMBER ['MFCD02681468\n'] 640s SCORE ['-213.462\n'] 640s MOLID ['MFCD02681468\n'] 640s HBA ['[1, 13, 14, 29]\n'] 640s HBD ['[]\n'] 640s ACD_NUMBER ['MFCD00141070\n'] 640s SCORE ['-213.240\n'] 640s MOLID ['MFCD00141070\n'] 640s HBA ['[1, 8]\n'] 640s HBD ['[]\n'] 640s ACD_NUMBER ['MFCD02983625\n'] 640s SCORE ['-211.422\n'] 640s MOLID ['MFCD02983625\n'] 640s HBA ['[1, 11]\n'] 640s HBD ['[3, 12]\n'] 640s ACD_NUMBER ['MFCD00115818\n'] 640s SCORE ['-210.482\n'] 640s MOLID ['MFCD00115818\n'] 640s autopkgtest [01:28:16]: test command5: -----------------------] 640s command5 PASS (superficial) 640s autopkgtest [01:28:16]: test command5: - - - - - - - - - - results - - - - - - - - - - 641s autopkgtest [01:28:17]: @@@@@@@@@@@@@@@@@@@@ summary 641s command1 PASS (superficial) 641s command2 PASS (superficial) 641s command3 PASS (superficial) 641s command4 PASS (superficial) 641s command5 PASS (superficial) 658s nova [W] Using flock in prodstack6-arm64 658s flock: timeout while waiting to get lock 658s Creating nova instance adt-plucky-arm64-pymol-20250316-011736-juju-7f2275-prod-proposed-migration-environment-20-44751922-8b47-47f3-9b90-6f7c250293a2 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 658s nova [W] Timed out waiting for 62875894-11e0-4a1b-b95a-f1a06496701d to get deleted.