0s autopkgtest [14:41:56]: starting date and time: 2025-03-15 14:41:56+0000 0s autopkgtest [14:41:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:41:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.itv_56in/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-38.secgroup --name adt-plucky-arm64-pymol-20250315-144155-juju-7f2275-prod-proposed-migration-environment-15-efe35003-455f-4c99-b707-21ed0138fda1 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 158s autopkgtest [14:44:34]: testbed dpkg architecture: arm64 158s autopkgtest [14:44:34]: testbed apt version: 2.9.33 159s autopkgtest [14:44:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 159s autopkgtest [14:44:35]: testbed release detected to be: None 160s autopkgtest [14:44:36]: updating testbed package index (apt update) 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 160s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 161s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 161s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 161s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 161s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 161s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 162s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 162s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 162s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 162s Fetched 1094 kB in 2s (657 kB/s) 163s Reading package lists... 164s + lsb_release --codename --short 164s + RELEASE=plucky 164s + cat 164s + [ plucky != trusty ] 164s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Calculating upgrade... 165s Calculating upgrade... 166s The following packages will be upgraded: 166s python3-jinja2 strace 167s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 608 kB of archives. 167s After this operation, 11.3 kB of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 167s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 168s Fetched 608 kB in 1s (588 kB/s) 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 169s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 169s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 169s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 169s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 169s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 170s Setting up strace (6.13+ds-1ubuntu1) ... 170s Processing triggers for man-db (2.13.0-1) ... 170s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 170s + /usr/lib/apt/apt-helper analyze-pattern ?true 170s + uname -r 170s + sed s/\./\\./g 170s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 171s + apt list ?obsolete 171s + tail -n+2 171s + grep -v ^linux-.*6\.14\.0-10-generic.* 171s + cut -d/ -f1 171s + obsolete_pkgs=linux-headers-6.11.0-8-generic 171s linux-headers-6.11.0-8 171s linux-image-6.11.0-8-generic 171s linux-modules-6.11.0-8-generic 171s linux-tools-6.11.0-8-generic 171s linux-tools-6.11.0-8 171s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 171s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Solving dependencies... 173s The following packages will be REMOVED: 173s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 173s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 173s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 173s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 174s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 174s After this operation, 267 MB disk space will be freed. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 174s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 174s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 174s Removing libpython3.12t64:arm64 (3.12.9-1) ... 174s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 174s Removing libnsl2:arm64 (1.3.0-3build3) ... 174s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 174s Removing libunwind8:arm64 (1.6.2-3.1) ... 174s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 174s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 176s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 176s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 176s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 176s /etc/kernel/postrm.d/initramfs-tools: 176s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 177s /etc/kernel/postrm.d/zz-flash-kernel: 177s flash-kernel: Kernel 6.11.0-8-generic has been removed. 177s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 177s /etc/kernel/postrm.d/zz-update-grub: 177s Sourcing file `/etc/default/grub' 177s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 177s Generating grub configuration file ... 177s Found linux image: /boot/vmlinuz-6.14.0-10-generic 177s Found initrd image: /boot/initrd.img-6.14.0-10-generic 178s Warning: os-prober will not be executed to detect other bootable partitions. 178s Systems on them will not be added to the GRUB boot configuration. 178s Check GRUB_DISABLE_OS_PROBER documentation entry. 178s Adding boot menu entry for UEFI Firmware Settings ... 178s done 178s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 178s Processing triggers for libc-bin (2.41-1ubuntu1) ... 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 178s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 178s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 178s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 178s + grep -q trusty /etc/lsb-release 178s + [ ! -d /usr/share/doc/unattended-upgrades ] 178s + [ ! -d /usr/share/doc/lxd ] 178s + [ ! -d /usr/share/doc/lxd-client ] 178s + [ ! -d /usr/share/doc/snapd ] 178s + type iptables 178s + cat 178s + chmod 755 /etc/rc.local 178s + . /etc/rc.local 178s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 178s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 178s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 178s + uname -m 179s + [ aarch64 = ppc64le ] 179s + [ -d /run/systemd/system ] 179s + systemd-detect-virt --quiet --vm 179s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 179s + cat 179s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 179s + echo COMPRESS=lz4 179s autopkgtest [14:44:55]: upgrading testbed (apt dist-upgrade and autopurge) 179s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s Entering ResolveByKeep 183s 184s Calculating upgrade... 185s The following packages will be upgraded: 185s libc-bin libc-dev-bin libc6 libc6-dev locales 185s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 9530 kB of archives. 185s After this operation, 0 B of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 187s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 187s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 190s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 191s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 195s Preconfiguring packages ... 196s Fetched 9530 kB in 10s (944 kB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 196s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 196s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 196s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc6:arm64 (2.41-1ubuntu2) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 197s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc-bin (2.41-1ubuntu2) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 197s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 197s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Setting up locales (2.41-1ubuntu2) ... 199s Generating locales (this might take a while)... 201s en_US.UTF-8... done 201s Generation complete. 201s Setting up libc-dev-bin (2.41-1ubuntu2) ... 201s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 201s Processing triggers for man-db (2.13.0-1) ... 202s Processing triggers for systemd (257.3-1ubuntu3) ... 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 206s Solving dependencies... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s autopkgtest [14:45:23]: rebooting testbed after setup commands that affected boot 234s autopkgtest [14:45:50]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 237s autopkgtest [14:45:53]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 263s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (dsc) [2324 B] 263s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (tar) [22.0 MB] 263s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (diff) [57.8 kB] 264s gpgv: Signature made Tue Mar 4 18:06:31 2025 UTC 264s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 264s gpgv: Can't check signature: No public key 264s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3build2.dsc: no acceptable signature found 265s autopkgtest [14:46:21]: testing package pymol version 3.0.0+dfsg-3build2 268s autopkgtest [14:46:24]: build not needed 272s autopkgtest [14:46:28]: test command1: preparing testbed 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 273s Starting pkgProblemResolver with broken count: 0 273s Starting 2 pkgProblemResolver with broken count: 0 273s Done 275s The following NEW packages will be installed: 275s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 275s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 275s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libgbm1 275s libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa libglvnd0 275s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 275s libhdf5-hl-310 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 275s liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 libopengl0 libpcre2-16-0 275s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 275s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 275s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 275s libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 275s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 275s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 275s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 275s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxkbcommon-x11-0 libxrender1 275s libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 275s python3-legacy-cgi python3-numpy python3-numpy-dev python3-opengl 275s python3-pymol python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip 275s x11-common 275s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 275s Need to get 45.3 MB of archives. 275s After this operation, 183 MB of additional disk space will be used. 275s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 275s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 276s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 276s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 279s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 283s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 283s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 284s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 284s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 284s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 285s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 285s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-16ubuntu1 [30.9 kB] 285s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-16ubuntu1 [22.9 kB] 285s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-16ubuntu1 [26.9 kB] 285s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.11-0ubuntu2 [274 kB] 285s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 285s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 285s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 285s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 285s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 285s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 285s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 285s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 285s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 285s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 25.0.1-2ubuntu1 [9450 kB] 299s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 25.0.1-2ubuntu1 [33.7 kB] 299s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.1-3 [27.0 kB] 299s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 299s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 25.0.1-2ubuntu1 [122 kB] 299s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 300s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 25.0.1-2ubuntu1 [34.5 kB] 300s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 300s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 300s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 300s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 25.0.1-2ubuntu1 [151 kB] 300s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 300s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 300s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 300s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 301s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 301s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 301s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 301s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 303s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 303s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 303s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 303s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.14.0-1 [103 kB] 304s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.14.0-1 [26.7 kB] 304s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.27.1-1 [23.5 kB] 304s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 304s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.27.1-1 [136 kB] 304s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 304s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 304s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 304s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 305s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 305s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-4ubuntu1 [1999 kB] 308s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4ubuntu1 [222 kB] 308s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 308s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-4ubuntu1 [735 kB] 309s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 309s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 309s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 309s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 309s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 309s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 309s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 309s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 309s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 309s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 309s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 309s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 309s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 309s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4ubuntu1 [3680 kB] 317s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4ubuntu1 [2568 kB] 326s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-4ubuntu1 [124 kB] 326s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-6build1 [2840 kB] 333s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-4ubuntu1 [123 kB] 334s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-6build1 [165 kB] 334s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-4ubuntu1 [149 kB] 334s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-4ubuntu1 [209 kB] 335s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-4ubuntu1 [144 kB] 335s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-legacy-cgi all 2.6.2-1 [16.6 kB] 335s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 335s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB] 336s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 337s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.17.0-1build1 [67.6 kB] 337s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-2 [2580 kB] 342s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-2 [119 kB] 342s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 345s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-3build2 [3961 kB] 353s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-3build2 [126 kB] 354s Fetched 45.3 MB in 1min 18s (579 kB/s) 354s Selecting previously unselected package python3-numpy-dev:arm64. 354s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 354s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 354s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 354s Selecting previously unselected package libblas3:arm64. 354s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 354s Unpacking libblas3:arm64 (3.12.1-2) ... 354s Selecting previously unselected package libgfortran5:arm64. 354s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 354s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 354s Selecting previously unselected package liblapack3:arm64. 354s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 354s Unpacking liblapack3:arm64 (3.12.1-2) ... 354s Selecting previously unselected package python3-numpy. 354s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 354s Unpacking python3-numpy (1:2.2.3+ds-5) ... 355s Selecting previously unselected package fonts-dejavu-mono. 355s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 355s Unpacking fonts-dejavu-mono (2.37-8) ... 355s Selecting previously unselected package fonts-dejavu-core. 355s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 355s Unpacking fonts-dejavu-core (2.37-8) ... 355s Selecting previously unselected package fontconfig-config. 355s Preparing to unpack .../07-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 355s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 355s Selecting previously unselected package libfontconfig1:arm64. 355s Preparing to unpack .../08-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 355s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 355s Selecting previously unselected package fontconfig. 355s Preparing to unpack .../09-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 355s Unpacking fontconfig (2.15.0-2ubuntu1) ... 355s Selecting previously unselected package libaec0:arm64. 355s Preparing to unpack .../10-libaec0_1.1.3-1_arm64.deb ... 355s Unpacking libaec0:arm64 (1.1.3-1) ... 355s Selecting previously unselected package libavahi-common-data:arm64. 355s Preparing to unpack .../11-libavahi-common-data_0.8-16ubuntu1_arm64.deb ... 355s Unpacking libavahi-common-data:arm64 (0.8-16ubuntu1) ... 356s Selecting previously unselected package libavahi-common3:arm64. 356s Preparing to unpack .../12-libavahi-common3_0.8-16ubuntu1_arm64.deb ... 356s Unpacking libavahi-common3:arm64 (0.8-16ubuntu1) ... 356s Selecting previously unselected package libavahi-client3:arm64. 356s Preparing to unpack .../13-libavahi-client3_0.8-16ubuntu1_arm64.deb ... 356s Unpacking libavahi-client3:arm64 (0.8-16ubuntu1) ... 356s Selecting previously unselected package libcups2t64:arm64. 356s Preparing to unpack .../14-libcups2t64_2.4.11-0ubuntu2_arm64.deb ... 356s Unpacking libcups2t64:arm64 (2.4.11-0ubuntu2) ... 356s Selecting previously unselected package libdouble-conversion3:arm64. 356s Preparing to unpack .../15-libdouble-conversion3_3.3.1-1_arm64.deb ... 356s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 356s Selecting previously unselected package libwayland-server0:arm64. 356s Preparing to unpack .../16-libwayland-server0_1.23.1-3_arm64.deb ... 356s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 356s Selecting previously unselected package libx11-xcb1:arm64. 356s Preparing to unpack .../17-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 356s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 356s Selecting previously unselected package libxcb-dri3-0:arm64. 356s Preparing to unpack .../18-libxcb-dri3-0_1.17.0-2_arm64.deb ... 356s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 356s Selecting previously unselected package libxcb-present0:arm64. 356s Preparing to unpack .../19-libxcb-present0_1.17.0-2_arm64.deb ... 356s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 356s Selecting previously unselected package libxcb-randr0:arm64. 356s Preparing to unpack .../20-libxcb-randr0_1.17.0-2_arm64.deb ... 356s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 356s Selecting previously unselected package libxcb-sync1:arm64. 356s Preparing to unpack .../21-libxcb-sync1_1.17.0-2_arm64.deb ... 356s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 356s Selecting previously unselected package libxcb-xfixes0:arm64. 356s Preparing to unpack .../22-libxcb-xfixes0_1.17.0-2_arm64.deb ... 356s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 356s Selecting previously unselected package libxshmfence1:arm64. 356s Preparing to unpack .../23-libxshmfence1_1.3-1build5_arm64.deb ... 356s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 356s Selecting previously unselected package mesa-libgallium:arm64. 356s Preparing to unpack .../24-mesa-libgallium_25.0.1-2ubuntu1_arm64.deb ... 356s Unpacking mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 357s Selecting previously unselected package libgbm1:arm64. 357s Preparing to unpack .../25-libgbm1_25.0.1-2ubuntu1_arm64.deb ... 357s Unpacking libgbm1:arm64 (25.0.1-2ubuntu1) ... 357s Selecting previously unselected package libwayland-client0:arm64. 357s Preparing to unpack .../26-libwayland-client0_1.23.1-3_arm64.deb ... 357s Unpacking libwayland-client0:arm64 (1.23.1-3) ... 357s Selecting previously unselected package libxcb-shm0:arm64. 357s Preparing to unpack .../27-libxcb-shm0_1.17.0-2_arm64.deb ... 357s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 357s Selecting previously unselected package libegl-mesa0:arm64. 357s Preparing to unpack .../28-libegl-mesa0_25.0.1-2ubuntu1_arm64.deb ... 357s Unpacking libegl-mesa0:arm64 (25.0.1-2ubuntu1) ... 357s Selecting previously unselected package libvulkan1:arm64. 357s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_arm64.deb ... 357s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 357s Selecting previously unselected package libgl1-mesa-dri:arm64. 357s Preparing to unpack .../30-libgl1-mesa-dri_25.0.1-2ubuntu1_arm64.deb ... 357s Unpacking libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 357s Selecting previously unselected package libglvnd0:arm64. 357s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_arm64.deb ... 357s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 357s Selecting previously unselected package libxcb-glx0:arm64. 357s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_arm64.deb ... 357s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 357s Selecting previously unselected package libxxf86vm1:arm64. 357s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 357s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 357s Selecting previously unselected package libglx-mesa0:arm64. 357s Preparing to unpack .../34-libglx-mesa0_25.0.1-2ubuntu1_arm64.deb ... 357s Unpacking libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 357s Selecting previously unselected package libglx0:arm64. 357s Preparing to unpack .../35-libglx0_1.7.0-1build1_arm64.deb ... 357s Unpacking libglx0:arm64 (1.7.0-1build1) ... 357s Selecting previously unselected package libgl1:arm64. 357s Preparing to unpack .../36-libgl1_1.7.0-1build1_arm64.deb ... 357s Unpacking libgl1:arm64 (1.7.0-1build1) ... 357s Selecting previously unselected package libglew2.2:arm64. 357s Preparing to unpack .../37-libglew2.2_2.2.0-4build1_arm64.deb ... 357s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 357s Selecting previously unselected package libgomp1:arm64. 357s Preparing to unpack .../38-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 357s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 357s Selecting previously unselected package libgraphite2-3:arm64. 357s Preparing to unpack .../39-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 357s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 358s Selecting previously unselected package libharfbuzz0b:arm64. 358s Preparing to unpack .../40-libharfbuzz0b_10.2.0-1_arm64.deb ... 358s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 358s Selecting previously unselected package libsz2:arm64. 358s Preparing to unpack .../41-libsz2_1.1.3-1_arm64.deb ... 358s Unpacking libsz2:arm64 (1.1.3-1) ... 358s Selecting previously unselected package libhdf5-310:arm64. 358s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_arm64.deb ... 358s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 358s Selecting previously unselected package libhdf5-hl-310:arm64. 358s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 358s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 358s Selecting previously unselected package x11-common. 358s Preparing to unpack .../44-x11-common_1%3a7.7+23ubuntu3_all.deb ... 358s Unpacking x11-common (1:7.7+23ubuntu3) ... 358s Selecting previously unselected package libice6:arm64. 358s Preparing to unpack .../45-libice6_2%3a1.1.1-1_arm64.deb ... 358s Unpacking libice6:arm64 (2:1.1.1-1) ... 358s Selecting previously unselected package libwacom-common. 358s Preparing to unpack .../46-libwacom-common_2.14.0-1_all.deb ... 358s Unpacking libwacom-common (2.14.0-1) ... 358s Selecting previously unselected package libwacom9:arm64. 358s Preparing to unpack .../47-libwacom9_2.14.0-1_arm64.deb ... 358s Unpacking libwacom9:arm64 (2.14.0-1) ... 358s Selecting previously unselected package libinput-bin. 358s Preparing to unpack .../48-libinput-bin_1.27.1-1_arm64.deb ... 358s Unpacking libinput-bin (1.27.1-1) ... 358s Selecting previously unselected package libmtdev1t64:arm64. 358s Preparing to unpack .../49-libmtdev1t64_1.1.7-1_arm64.deb ... 358s Unpacking libmtdev1t64:arm64 (1.1.7-1) ... 358s Selecting previously unselected package libinput10:arm64. 358s Preparing to unpack .../50-libinput10_1.27.1-1_arm64.deb ... 358s Unpacking libinput10:arm64 (1.27.1-1) ... 358s Selecting previously unselected package libjpeg-turbo8:arm64. 358s Preparing to unpack .../51-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 358s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 358s Selecting previously unselected package libjpeg8:arm64. 358s Preparing to unpack .../52-libjpeg8_8c-2ubuntu11_arm64.deb ... 358s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 358s Selecting previously unselected package libmd4c0:arm64. 358s Preparing to unpack .../53-libmd4c0_0.5.2-2_arm64.deb ... 358s Unpacking libmd4c0:arm64 (0.5.2-2) ... 358s Selecting previously unselected package libnetcdf22:arm64. 358s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 358s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 359s Selecting previously unselected package libpcre2-16-0:arm64. 359s Preparing to unpack .../55-libpcre2-16-0_10.45-1_arm64.deb ... 359s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 359s Selecting previously unselected package libqt5core5t64:arm64. 359s Preparing to unpack .../56-libqt5core5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 359s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 359s Selecting previously unselected package libqt5dbus5t64:arm64. 359s Preparing to unpack .../57-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 359s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 359s Selecting previously unselected package libegl1:arm64. 359s Preparing to unpack .../58-libegl1_1.7.0-1build1_arm64.deb ... 359s Unpacking libegl1:arm64 (1.7.0-1build1) ... 359s Selecting previously unselected package libqt5network5t64:arm64. 359s Preparing to unpack .../59-libqt5network5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 359s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 359s Selecting previously unselected package libsm6:arm64. 359s Preparing to unpack .../60-libsm6_2%3a1.2.4-1_arm64.deb ... 359s Unpacking libsm6:arm64 (2:1.2.4-1) ... 359s Selecting previously unselected package libxcb-icccm4:arm64. 359s Preparing to unpack .../61-libxcb-icccm4_0.4.2-1_arm64.deb ... 359s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 359s Selecting previously unselected package libxcb-util1:arm64. 359s Preparing to unpack .../62-libxcb-util1_0.4.1-1_arm64.deb ... 359s Unpacking libxcb-util1:arm64 (0.4.1-1) ... 359s Selecting previously unselected package libxcb-image0:arm64. 359s Preparing to unpack .../63-libxcb-image0_0.4.0-2build1_arm64.deb ... 359s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 359s Selecting previously unselected package libxcb-keysyms1:arm64. 359s Preparing to unpack .../64-libxcb-keysyms1_0.4.1-1_arm64.deb ... 359s Unpacking libxcb-keysyms1:arm64 (0.4.1-1) ... 359s Selecting previously unselected package libxcb-render0:arm64. 359s Preparing to unpack .../65-libxcb-render0_1.17.0-2_arm64.deb ... 359s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 359s Selecting previously unselected package libxcb-render-util0:arm64. 359s Preparing to unpack .../66-libxcb-render-util0_0.3.10-1_arm64.deb ... 359s Unpacking libxcb-render-util0:arm64 (0.3.10-1) ... 359s Selecting previously unselected package libxcb-shape0:arm64. 359s Preparing to unpack .../67-libxcb-shape0_1.17.0-2_arm64.deb ... 359s Unpacking libxcb-shape0:arm64 (1.17.0-2) ... 359s Selecting previously unselected package libxcb-xinerama0:arm64. 359s Preparing to unpack .../68-libxcb-xinerama0_1.17.0-2_arm64.deb ... 359s Unpacking libxcb-xinerama0:arm64 (1.17.0-2) ... 359s Selecting previously unselected package libxcb-xinput0:arm64. 359s Preparing to unpack .../69-libxcb-xinput0_1.17.0-2_arm64.deb ... 359s Unpacking libxcb-xinput0:arm64 (1.17.0-2) ... 359s Selecting previously unselected package libxcb-xkb1:arm64. 359s Preparing to unpack .../70-libxcb-xkb1_1.17.0-2_arm64.deb ... 359s Unpacking libxcb-xkb1:arm64 (1.17.0-2) ... 360s Selecting previously unselected package libxkbcommon-x11-0:arm64. 360s Preparing to unpack .../71-libxkbcommon-x11-0_1.7.0-2_arm64.deb ... 360s Unpacking libxkbcommon-x11-0:arm64 (1.7.0-2) ... 360s Selecting previously unselected package libxrender1:arm64. 360s Preparing to unpack .../72-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 360s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 360s Selecting previously unselected package libqt5gui5t64:arm64. 360s Preparing to unpack .../73-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5widgets5t64:arm64. 360s Preparing to unpack .../74-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5xml5t64:arm64. 360s Preparing to unpack .../75-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5designer5:arm64. 360s Preparing to unpack .../76-libqt5designer5_5.15.15-6build1_arm64.deb ... 360s Unpacking libqt5designer5:arm64 (5.15.15-6build1) ... 360s Selecting previously unselected package libqt5sql5t64:arm64. 360s Preparing to unpack .../77-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5help5:arm64. 360s Preparing to unpack .../78-libqt5help5_5.15.15-6build1_arm64.deb ... 360s Unpacking libqt5help5:arm64 (5.15.15-6build1) ... 360s Selecting previously unselected package libqt5opengl5t64:arm64. 360s Preparing to unpack .../79-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5opengl5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5printsupport5t64:arm64. 360s Preparing to unpack .../80-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package libqt5test5t64:arm64. 360s Preparing to unpack .../81-libqt5test5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 360s Unpacking libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 360s Selecting previously unselected package python3-legacy-cgi. 360s Preparing to unpack .../82-python3-legacy-cgi_2.6.2-1_all.deb ... 360s Unpacking python3-legacy-cgi (2.6.2-1) ... 360s Selecting previously unselected package libopengl0:arm64. 360s Preparing to unpack .../83-libopengl0_1.7.0-1build1_arm64.deb ... 360s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 360s Selecting previously unselected package libglu1-mesa:arm64. 361s Preparing to unpack .../84-libglu1-mesa_9.0.2-1.1build1_arm64.deb ... 361s Unpacking libglu1-mesa:arm64 (9.0.2-1.1build1) ... 361s Selecting previously unselected package python3-opengl. 361s Preparing to unpack .../85-python3-opengl_3.1.7+dfsg-1_all.deb ... 361s Unpacking python3-opengl (3.1.7+dfsg-1) ... 361s Selecting previously unselected package python3-pyqt5.sip. 361s Preparing to unpack .../86-python3-pyqt5.sip_12.17.0-1build1_arm64.deb ... 361s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 361s Selecting previously unselected package python3-pyqt5. 361s Preparing to unpack .../87-python3-pyqt5_5.15.11+dfsg-2_arm64.deb ... 361s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 361s Selecting previously unselected package python3-pyqt5.qtopengl. 361s Preparing to unpack .../88-python3-pyqt5.qtopengl_5.15.11+dfsg-2_arm64.deb ... 361s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 361s Selecting previously unselected package pymol-data. 361s Preparing to unpack .../89-pymol-data_3.0.0+dfsg-3build2_all.deb ... 361s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 361s Selecting previously unselected package python3-pymol. 361s Preparing to unpack .../90-python3-pymol_3.0.0+dfsg-3build2_arm64.deb ... 361s Unpacking python3-pymol (3.0.0+dfsg-3build2) ... 362s Selecting previously unselected package pymol. 362s Preparing to unpack .../91-pymol_3.0.0+dfsg-3build2_all.deb ... 362s Unpacking pymol (3.0.0+dfsg-3build2) ... 362s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 362s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 362s Setting up libwayland-server0:arm64 (1.23.1-3) ... 362s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 362s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 362s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 362s Setting up libxcb-xinput0:arm64 (1.17.0-2) ... 362s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 362s Setting up libxcb-render0:arm64 (1.17.0-2) ... 362s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 362s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 362s Setting up libxcb-keysyms1:arm64 (0.4.1-1) ... 362s Setting up libxcb-shape0:arm64 (1.17.0-2) ... 362s Setting up x11-common (1:7.7+23ubuntu3) ... 362s Setting up libxcb-render-util0:arm64 (0.3.10-1) ... 362s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 362s Setting up libxcb-icccm4:arm64 (0.4.2-1) ... 362s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 362s Setting up libpcre2-16-0:arm64 (10.45-1) ... 362s Setting up libaec0:arm64 (1.1.3-1) ... 362s Setting up libopengl0:arm64 (1.7.0-1build1) ... 362s Setting up libxcb-util1:arm64 (0.4.1-1) ... 362s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 362s Setting up libxcb-xkb1:arm64 (1.17.0-2) ... 362s Setting up libxcb-image0:arm64 (0.4.0-2build1) ... 362s Setting up libxcb-present0:arm64 (1.17.0-2) ... 362s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 362s Setting up libblas3:arm64 (3.12.1-2) ... 362s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 362s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ... 362s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 362s Setting up libavahi-common-data:arm64 (0.8-16ubuntu1) ... 362s Setting up pymol-data (3.0.0+dfsg-3build2) ... 362s Setting up libxkbcommon-x11-0:arm64 (1.7.0-2) ... 362s Setting up fonts-dejavu-mono (2.37-8) ... 362s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 362s Setting up fonts-dejavu-core (2.37-8) ... 362s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 362s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 362s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 362s Setting up python3-legacy-cgi (2.6.2-1) ... 362s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 362s Setting up libmtdev1t64:arm64 (1.1.7-1) ... 362s Setting up libxshmfence1:arm64 (1.3-1build5) ... 362s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 362s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 362s Setting up libmd4c0:arm64 (0.5.2-2) ... 362s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 362s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ... 362s Setting up libsz2:arm64 (1.1.3-1) ... 362s Setting up libwacom-common (2.14.0-1) ... 362s Setting up libwayland-client0:arm64 (1.23.1-3) ... 362s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 362s Setting up libice6:arm64 (2:1.1.1-1) ... 362s Setting up mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 362s Setting up liblapack3:arm64 (3.12.1-2) ... 362s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 362s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 362s Setting up libgbm1:arm64 (25.0.1-2ubuntu1) ... 362s Setting up libwacom9:arm64 (2.14.0-1) ... 362s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 363s Setting up libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 363s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 363s Setting up libavahi-common3:arm64 (0.8-16ubuntu1) ... 363s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 363s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 363s Setting up libinput-bin (1.27.1-1) ... 363s Setting up libegl-mesa0:arm64 (25.0.1-2ubuntu1) ... 363s Setting up python3-numpy (1:2.2.3+ds-5) ... 366s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 366s Setting up libegl1:arm64 (1.7.0-1build1) ... 366s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 366s Setting up libsm6:arm64 (2:1.2.4-1) ... 366s Setting up libavahi-client3:arm64 (0.8-16ubuntu1) ... 366s Setting up libinput10:arm64 (1.27.1-1) ... 366s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 366s Setting up fontconfig (2.15.0-2ubuntu1) ... 368s Regenerating fonts cache... done. 368s Setting up libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 368s Setting up libglx0:arm64 (1.7.0-1build1) ... 368s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 368s Setting up libgl1:arm64 (1.7.0-1build1) ... 368s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 368s Setting up libcups2t64:arm64 (2.4.11-0ubuntu2) ... 368s Setting up python3-opengl (3.1.7+dfsg-1) ... 369s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 369s |\ |\ 371s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 371s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 371s Setting up libqt5help5:arm64 (5.15.15-6build1) ... 371s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 371s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 371s Setting up libqt5designer5:arm64 (5.15.15-6build1) ... 371s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 371s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 371s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 372s Setting up pymol (3.0.0+dfsg-3build2) ... 372s Processing triggers for libc-bin (2.41-1ubuntu2) ... 372s Processing triggers for man-db (2.13.0-1) ... 373s Processing triggers for udev (257.3-1ubuntu3) ... 375s autopkgtest [14:48:11]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 375s autopkgtest [14:48:11]: test command1: [----------------------- 375s Search pymol scripts in /tmp/autopkgtest.FJTrN7/build.e0t/src/examples... 375s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/examples 375s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/chempy/generate_amber.py'... 376s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/chempy/generate_mmff.py'... 376s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/area_diff.pml'... 377s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/build_peptide.py'... 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/contact.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/dali.py 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/density.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/groel_es.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/multiclip_ray.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/packing.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/packsurf.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ref_frame.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ribosome.pml 377s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/scenes2movie.pml 377s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/seq_match_sele.pml'... 382s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ss_xfer.pml 382s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/symsph.py'... 382s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/brick01.py'... 383s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo01.py'... 383s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo02.py'... 386s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo03.py'... 390s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo04.py'... 390s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo05.py'... 390s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo06.py'... 393s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo07.py'... 393s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo08.py'... 394s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_3Dtext01.py'... 394s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_axes.py'... 394s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_label_hack.py'... 398s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_plane.py'... 398s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model01.py'... 398s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model02.py'... 398s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model03.py'... 402s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/click_ordered_list.py'... 402s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/count_molecules.py'... 403s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/extend_demo01.py'... 403s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl01.py'... 403s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl02.py'... 404s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl03.py'... 408s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/importing.py 408s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/link_demo.py'... 408s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/membrane.py'... 409s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/mutate01.pml'... 409s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/mutate02.py'... 411s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/my_ext_gui.py'... 411s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/particle01.py'... 412s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/particle02.py'... 413s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/pick_wiz.py'... 413s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/povray01.py 413s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/scenes_to_movie01.pml'... 413s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/sd_annotate.pml 413s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/sele_wiz.py'... 414s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/start_pymol.py 414s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/syncmol.py'... 414s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/tkwindow.py 414s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui01.py'... 414s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui02.py'... 414s /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 414s mo = re.search("molid\=([A-Z0-9]+)",self.path) 414s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/xmlrpc01.py 415s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/xmlrpc02.py'... 415s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_demo.py'... 415s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_viewer1.py'... 415s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_viewer2.py'... 416s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/chempy 416s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/chempy/generate_amber.py'... 416s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/chempy/generate_mmff.py'... 416s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook 416s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/area_diff.pml'... 418s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/build_peptide.py'... 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/contact.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/dali.py 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/density.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/groel_es.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/multiclip_ray.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/packing.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/packsurf.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ref_frame.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ribosome.pml 418s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/scenes2movie.pml 418s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/seq_match_sele.pml'... 419s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/ss_xfer.pml 419s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/cookbook/symsph.py'... 420s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel 420s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/brick01.py'... 420s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo01.py'... 421s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo02.py'... 424s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo03.py'... 427s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo04.py'... 428s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo05.py'... 428s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo06.py'... 429s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo07.py'... 430s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo08.py'... 430s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_3Dtext01.py'... 431s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_axes.py'... 431s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_label_hack.py'... 434s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/cgo_plane.py'... 435s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model01.py'... 435s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model02.py'... 435s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/chempy_model03.py'... 439s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/click_ordered_list.py'... 439s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/count_molecules.py'... 439s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/extend_demo01.py'... 440s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl01.py'... 440s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl02.py'... 441s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/gl03.py'... 444s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/importing.py 444s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/link_demo.py'... 444s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/membrane.py'... 445s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/mutate01.pml'... 445s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/mutate02.py'... 447s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/my_ext_gui.py'... 447s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/particle01.py'... 448s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/particle02.py'... 448s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/pick_wiz.py'... 449s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/povray01.py 449s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/scenes_to_movie01.pml'... 449s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/sd_annotate.pml 449s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/sele_wiz.py'... 449s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/start_pymol.py 449s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/syncmol.py'... 450s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/tkwindow.py 450s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui01.py'... 450s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui02.py'... 451s /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 451s mo = re.search("molid\=([A-Z0-9]+)",self.path) 451s Skip /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/xmlrpc01.py 451s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/devel/xmlrpc02.py'... 451s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching 451s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_demo.py'... 452s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_viewer1.py'... 452s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/examples/launching/launch_viewer2.py'... 453s autopkgtest [14:49:29]: test command1: -----------------------] 453s autopkgtest [14:49:29]: test command1: - - - - - - - - - - results - - - - - - - - - - 453s command1 PASS (superficial) 454s autopkgtest [14:49:30]: test command2: preparing testbed 454s Reading package lists... 455s Building dependency tree... 455s Reading state information... 455s Starting pkgProblemResolver with broken count: 0 456s Starting 2 pkgProblemResolver with broken count: 0 456s Done 457s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 458s autopkgtest [14:49:34]: test command2: sh debian/tests/call-pymol-scripts data/demo 458s autopkgtest [14:49:34]: test command2: [----------------------- 458s Search pymol scripts in /tmp/autopkgtest.FJTrN7/build.e0t/src/data/demo... 458s Processing new directory /tmp/autopkgtest.FJTrN7/build.e0t/src/data/demo 458s Run 'pymol -c /tmp/autopkgtest.FJTrN7/build.e0t/src/data/demo/cgo03.py'... 462s autopkgtest [14:49:38]: test command2: -----------------------] 463s autopkgtest [14:49:39]: test command2: - - - - - - - - - - results - - - - - - - - - - 463s command2 PASS (superficial) 463s autopkgtest [14:49:39]: test command3: preparing testbed 463s Reading package lists... 464s Building dependency tree... 464s Reading state information... 465s Starting pkgProblemResolver with broken count: 0 465s Starting 2 pkgProblemResolver with broken count: 0 465s Done 466s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 467s autopkgtest [14:49:43]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 467s autopkgtest [14:49:43]: test command3: [----------------------- 468s Search pymol scripts in /usr/share/pymol/examples... 468s Processing new directory /usr/share/pymol/examples 468s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 468s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 468s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 468s Skip /usr/share/pymol/examples/cookbook/contact.pml 468s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 468s Skip /usr/share/pymol/examples/cookbook/packing.pml 468s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 468s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 468s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 468s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 468s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 468s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 469s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 469s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 476s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 476s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 477s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 478s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 478s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 479s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 479s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 479s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 483s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 483s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 483s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 484s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 487s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 487s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 488s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 488s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 489s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 493s Skip /usr/share/pymol/examples/devel/importing.py 493s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 494s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 494s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 495s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 497s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 497s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 498s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 499s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 499s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 500s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 500s Skip /usr/share/pymol/examples/devel/tkwindow.py 500s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 500s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 501s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 501s mo = re.search("molid\=([A-Z0-9]+)",self.path) 501s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 501s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 501s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 502s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 502s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 502s Processing new directory /usr/share/pymol/examples/chempy 502s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 503s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 503s Processing new directory /usr/share/pymol/examples/cookbook 503s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 503s Skip /usr/share/pymol/examples/cookbook/contact.pml 503s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 503s Skip /usr/share/pymol/examples/cookbook/packing.pml 503s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 503s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 503s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 503s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 503s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 503s Processing new directory /usr/share/pymol/examples/devel 503s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 503s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 504s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 507s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 512s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 513s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 513s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 513s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 514s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 517s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 517s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 518s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 518s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 522s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 522s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 522s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 523s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 523s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 524s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 528s Skip /usr/share/pymol/examples/devel/importing.py 528s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 529s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 529s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 529s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 531s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 532s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 532s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 533s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 533s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 534s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 534s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 534s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 534s Skip /usr/share/pymol/examples/devel/tkwindow.py 534s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 534s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 535s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 535s mo = re.search("molid\=([A-Z0-9]+)",self.path) 535s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 535s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 535s Processing new directory /usr/share/pymol/examples/launching 535s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 536s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 536s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 537s autopkgtest [14:50:53]: test command3: -----------------------] 537s autopkgtest [14:50:53]: test command3: - - - - - - - - - - results - - - - - - - - - - 537s command3 PASS (superficial) 538s autopkgtest [14:50:54]: test command4: preparing testbed 538s Reading package lists... 538s Building dependency tree... 539s Reading state information... 539s Starting pkgProblemResolver with broken count: 0 539s Starting 2 pkgProblemResolver with broken count: 0 539s Done 541s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 542s autopkgtest [14:50:58]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 542s autopkgtest [14:50:58]: test command4: [----------------------- 542s Search pymol scripts in /usr/share/pymol/examples/cookbook... 542s Processing new directory /usr/share/pymol/examples/cookbook 542s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 543s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 545s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 545s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 547s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 592s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 597s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 598s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 599s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 602s autopkgtest [14:51:58]: test command4: -----------------------] 602s command4 PASS (superficial) 602s autopkgtest [14:51:58]: test command4: - - - - - - - - - - results - - - - - - - - - - 603s autopkgtest [14:51:59]: test command5: preparing testbed 603s Reading package lists... 604s Building dependency tree... 604s Reading state information... 605s Starting pkgProblemResolver with broken count: 0 605s Starting 2 pkgProblemResolver with broken count: 0 605s Done 606s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 607s autopkgtest [14:52:03]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 607s autopkgtest [14:52:03]: test command5: [----------------------- 607s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 607s Copyright (c) Schrodinger, LLC. 607s All Rights Reserved. 607s 607s Created by Warren L. DeLano, Ph.D. 607s 607s PyMOL is user-supported open-source software. Although some versions 607s are freely available, PyMOL is not in the public domain. 607s 607s If PyMOL is helpful in your work or study, then please volunteer 607s support for our ongoing efforts to create open and affordable scientific 607s software by purchasing a PyMOL Maintenance and/or Support subscription. 607s 607s More information can be found at "http://www.pymol.org". 607s 607s Enter "help" for a list of commands. 607s Enter "help " for information on a specific command. 607s 607s Hit ESC anytime to toggle between text and graphics. 607s 607s Setting: wizard_prompt_mode set to 3. 607s Detected 2 CPU cores. Enabled multithreaded rendering. 607s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 607s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 607s PyMOL>wizard annotation 607s PyMOL>set wizard_prompt_mode,3 607s PyMOL>load_annotated_sdf demo.sdf 607s HBA ['[1, 25, 26, 34]\n'] 607s HBD ['[20]\n'] 607s ACD_NUMBER ['MFCD02681585\n'] 607s SCORE ['-222.044\n'] 607s MOLID ['MFCD02681585\n'] 607s HBA ['[1, 21]\n'] 607s HBD ['[]\n'] 607s ACD_NUMBER ['MFCD01567969\n'] 607s SCORE ['-219.984\n'] 607s MOLID ['MFCD01567969\n'] 607s HBA ['[1, 24]\n'] 607s HBD ['[10, 22]\n'] 607s ACD_NUMBER ['MFCD00023789\n'] 607s SCORE ['-219.911\n'] 607s MOLID ['MFCD00023789\n'] 607s HBA ['[1, 11]\n'] 607s HBD ['[3]\n'] 607s ACD_NUMBER ['MFCD02579443\n'] 607s SCORE ['-219.769\n'] 607s MOLID ['MFCD02579443\n'] 607s HBA ['[1, 11]\n'] 607s HBD ['[9]\n'] 607s ACD_NUMBER ['MFCD02579410\n'] 607s SCORE ['-214.809\n'] 607s MOLID ['MFCD02579410\n'] 607s HBA ['[1, 20, 22, 27, 32]\n'] 607s HBD ['[10, 20]\n'] 607s ACD_NUMBER ['MFCD02579135\n'] 607s SCORE ['-213.630\n'] 607s MOLID ['MFCD02579135\n'] 607s HBA ['[1, 11, 14, 21]\n'] 607s HBD ['[]\n'] 607s ACD_NUMBER ['MFCD02681468\n'] 607s SCORE ['-213.462\n'] 607s MOLID ['MFCD02681468\n'] 607s HBA ['[1, 13, 14, 29]\n'] 607s HBD ['[]\n'] 607s ACD_NUMBER ['MFCD00141070\n'] 607s SCORE ['-213.240\n'] 607s MOLID ['MFCD00141070\n'] 607s HBA ['[1, 8]\n'] 607s HBD ['[]\n'] 607s ACD_NUMBER ['MFCD02983625\n'] 607s SCORE ['-211.422\n'] 607s MOLID ['MFCD02983625\n'] 607s HBA ['[1, 11]\n'] 607s HBD ['[3, 12]\n'] 607s ACD_NUMBER ['MFCD00115818\n'] 607s SCORE ['-210.482\n'] 607s MOLID ['MFCD00115818\n'] 608s autopkgtest [14:52:04]: test command5: -----------------------] 608s command5 PASS (superficial) 608s autopkgtest [14:52:04]: test command5: - - - - - - - - - - results - - - - - - - - - - 608s autopkgtest [14:52:04]: @@@@@@@@@@@@@@@@@@@@ summary 608s command1 PASS (superficial) 608s command2 PASS (superficial) 608s command3 PASS (superficial) 608s command4 PASS (superficial) 608s command5 PASS (superficial) 626s nova [W] Using flock in prodstack6-arm64 626s flock: timeout while waiting to get lock 626s Creating nova instance adt-plucky-arm64-pymol-20250315-144155-juju-7f2275-prod-proposed-migration-environment-15-efe35003-455f-4c99-b707-21ed0138fda1 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 626s nova [W] Timed out waiting for 17e11b28-0042-4dbf-8e2d-4e78edc5d788 to get deleted.