0s autopkgtest [17:21:35]: starting date and time: 2025-01-03 17:21:35+0000 0s autopkgtest [17:21:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:21:35]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.llxufnmn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-36.secgroup --name adt-plucky-arm64-pymol-20250103-172135-juju-7f2275-prod-proposed-migration-environment-15-32367dc7-dd0e-4473-8316-0583d9d412f1 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [17:24:04]: testbed dpkg architecture: arm64 149s autopkgtest [17:24:04]: testbed apt version: 2.9.18 149s autopkgtest [17:24:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 149s autopkgtest [17:24:04]: testbed release detected to be: None 150s autopkgtest [17:24:05]: updating testbed package index (apt update) 151s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 151s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 151s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [780 kB] 151s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 151s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB] 151s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 151s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [99.9 kB] 151s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB] 151s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [821 kB] 151s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [12.2 kB] 152s Fetched 1939 kB in 1s (1978 kB/s) 153s Reading package lists... 153s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s Calculating upgrade... 155s The following packages will be upgraded: 155s base-passwd bash-completion binutils binutils-aarch64-linux-gnu 155s binutils-common libbinutils libctf-nobfd0 libctf0 libgprofng0 libsframe1 155s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 5715 kB of archives. 155s After this operation, 143 kB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 base-passwd arm64 3.6.6 [53.6 kB] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 bash-completion all 1:2.16.0-1 [214 kB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgprofng0 arm64 2.43.50.20241230-1ubuntu1 [781 kB] 156s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf0 arm64 2.43.50.20241230-1ubuntu1 [99.0 kB] 156s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf-nobfd0 arm64 2.43.50.20241230-1ubuntu1 [102 kB] 156s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-aarch64-linux-gnu arm64 2.43.50.20241230-1ubuntu1 [3421 kB] 156s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libbinutils arm64 2.43.50.20241230-1ubuntu1 [782 kB] 156s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils arm64 2.43.50.20241230-1ubuntu1 [3254 B] 156s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-common arm64 2.43.50.20241230-1ubuntu1 [245 kB] 156s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsframe1 arm64 2.43.50.20241230-1ubuntu1 [14.3 kB] 157s Preconfiguring packages ... 157s Fetched 5715 kB in 1s (6988 kB/s) 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 157s Preparing to unpack .../base-passwd_3.6.6_arm64.deb ... 157s Unpacking base-passwd (3.6.6) over (3.6.5) ... 157s Setting up base-passwd (3.6.6) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80060 files and directories currently installed.) 158s Preparing to unpack .../0-bash-completion_1%3a2.16.0-1_all.deb ... 158s Unpacking bash-completion (1:2.16.0-1) over (1:2.14.0-2) ... 158s Preparing to unpack .../1-libgprofng0_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 158s Preparing to unpack .../2-libctf0_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking libctf0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 158s Preparing to unpack .../3-libctf-nobfd0_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 158s Preparing to unpack .../4-binutils-aarch64-linux-gnu_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 158s Preparing to unpack .../5-libbinutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking libbinutils:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 158s Preparing to unpack .../6-binutils_2.43.50.20241230-1ubuntu1_arm64.deb ... 158s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 159s Preparing to unpack .../7-binutils-common_2.43.50.20241230-1ubuntu1_arm64.deb ... 159s Unpacking binutils-common:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 159s Preparing to unpack .../8-libsframe1_2.43.50.20241230-1ubuntu1_arm64.deb ... 159s Unpacking libsframe1:arm64 (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 159s Setting up binutils-common:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up libctf-nobfd0:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up libsframe1:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up bash-completion (1:2.16.0-1) ... 159s Setting up libbinutils:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up libctf0:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up libgprofng0:arm64 (2.43.50.20241230-1ubuntu1) ... 159s Setting up binutils-aarch64-linux-gnu (2.43.50.20241230-1ubuntu1) ... 159s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 159s Processing triggers for libc-bin (2.40-4ubuntu1) ... 159s Processing triggers for man-db (2.13.0-1) ... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 162s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 162s autopkgtest [17:24:17]: upgrading testbed (apt dist-upgrade and autopurge) 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 165s Entering ResolveByKeep 165s 166s The following packages were automatically installed and are no longer required: 166s python3.12 python3.12-minimal 166s Use 'sudo apt autoremove' to remove them. 166s The following NEW packages will be installed: 166s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 166s The following packages will be upgraded: 166s libpython3-stdlib python3 python3-minimal 166s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 5992 kB of archives. 166s After this operation, 24.3 MB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.1-2 [879 kB] 166s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.1-2 [2262 kB] 166s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.13.1-1~exp2 [27.6 kB] 166s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.13.1-1~exp2 [23.9 kB] 166s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.1-2 [2061 kB] 166s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.1-2 [729 kB] 167s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.13.1-1~exp2 [10.2 kB] 167s Fetched 5992 kB in 1s (6976 kB/s) 167s Selecting previously unselected package libpython3.13-minimal:arm64. 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80185 files and directories currently installed.) 167s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_arm64.deb ... 167s Unpacking libpython3.13-minimal:arm64 (3.13.1-2) ... 167s Selecting previously unselected package python3.13-minimal. 167s Preparing to unpack .../python3.13-minimal_3.13.1-2_arm64.deb ... 167s Unpacking python3.13-minimal (3.13.1-2) ... 167s Setting up libpython3.13-minimal:arm64 (3.13.1-2) ... 167s Setting up python3.13-minimal (3.13.1-2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 169s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_arm64.deb ... 169s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 169s Setting up python3-minimal (3.13.1-1~exp2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80505 files and directories currently installed.) 169s Preparing to unpack .../python3_3.13.1-1~exp2_arm64.deb ... 169s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 169s Selecting previously unselected package libpython3.13-stdlib:arm64. 169s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_arm64.deb ... 169s Unpacking libpython3.13-stdlib:arm64 (3.13.1-2) ... 170s Selecting previously unselected package python3.13. 170s Preparing to unpack .../python3.13_3.13.1-2_arm64.deb ... 170s Unpacking python3.13 (3.13.1-2) ... 170s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_arm64.deb ... 170s Unpacking libpython3-stdlib:arm64 (3.13.1-1~exp2) over (3.12.8-1) ... 170s Setting up libpython3.13-stdlib:arm64 (3.13.1-2) ... 170s Setting up libpython3-stdlib:arm64 (3.13.1-1~exp2) ... 170s Setting up python3.13 (3.13.1-2) ... 172s Setting up python3 (3.13.1-1~exp2) ... 172s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 172s for fn in glob1(directory, "%s.*" % fname): 172s Processing triggers for man-db (2.13.0-1) ... 173s Processing triggers for systemd (257-2ubuntu1) ... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s The following packages will be REMOVED: 175s python3.12* python3.12-minimal* 176s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 176s After this operation, 8710 kB disk space will be freed. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80922 files and directories currently installed.) 176s Removing python3.12 (3.12.8-3) ... 176s Removing python3.12-minimal (3.12.8-3) ... 176s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 176s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 177s Processing triggers for man-db (2.13.0-1) ... 177s Processing triggers for systemd (257-2ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 177s Purging configuration files for python3.12-minimal (3.12.8-3) ... 181s autopkgtest [17:24:36]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 181s autopkgtest [17:24:36]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 185s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB] 185s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC 185s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 185s gpgv: Can't check signature: No public key 185s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found 187s autopkgtest [17:24:42]: testing package pymol version 3.0.0+dfsg-1build1 187s autopkgtest [17:24:42]: build not needed 191s autopkgtest [17:24:46]: test command1: preparing testbed 191s Reading package lists... 192s Building dependency tree... 192s Reading state information... 192s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 194s The following NEW packages will be installed: 194s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 194s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 194s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 194s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 194s libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 194s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin 194s libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 194s libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 194s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 194s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 194s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 194s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 194s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 194s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 194s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 194s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 194s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 194s python3-numpy python3-opengl python3-pymol python3-pyqt5 194s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 194s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 48.1 MB of archives. 194s After this operation, 197 MB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 195s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 195s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 195s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 195s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-14ubuntu1 [30.5 kB] 195s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-14ubuntu1 [23.1 kB] 195s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-14ubuntu1 [27.3 kB] 195s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 195s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.11-0ubuntu2 [274 kB] 195s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB] 195s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-radeon1 arm64 2.4.123-1 [20.8 kB] 195s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.0-1 [35.7 kB] 195s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 195s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libglapi-mesa arm64 24.2.8-1ubuntu1 [60.0 kB] 195s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 195s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [7418 B] 195s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 195s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 195s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 195s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 195s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 195s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 24.2.8-1ubuntu1 [9039 kB] 195s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 24.2.8-1ubuntu1 [32.9 kB] 195s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.0-1 [26.7 kB] 195s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 195s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 24.2.8-1ubuntu1 [129 kB] 195s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-12ubuntu1 [437 kB] 196s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.3.296.0-1 [153 kB] 196s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 24.2.8-1ubuntu1 [33.5 kB] 196s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 196s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 196s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB] 196s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 196s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 24.2.8-1ubuntu1 [164 kB] 196s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 196s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 196s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 196s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-12ubuntu1 [145 kB] 196s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 196s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.1.0-1 [489 kB] 196s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 196s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-5ubuntu1 [1210 kB] 196s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-5ubuntu1 [56.9 kB] 196s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 196s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 196s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.13.0-1 [98.6 kB] 196s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.13.0-1 [25.2 kB] 196s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.26.2-1 [22.8 kB] 196s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [14.4 kB] 196s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.26.2-1 [132 kB] 196s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 196s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 196s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 196s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 196s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 196s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 196s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-1ubuntu1 [1997 kB] 196s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-1ubuntu1 [221 kB] 196s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 196s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-1ubuntu1 [735 kB] 196s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 196s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 196s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.0-1build3 [10.7 kB] 196s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 196s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.0-1build4 [7984 B] 196s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 196s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.9-1build4 [9648 B] 196s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 196s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 196s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 196s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 196s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 196s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 196s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-1ubuntu1 [3679 kB] 196s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-1ubuntu1 [2567 kB] 196s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-1ubuntu1 [124 kB] 196s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-4 [2839 kB] 197s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-1ubuntu1 [123 kB] 197s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-4 [165 kB] 197s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-1ubuntu1 [149 kB] 197s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-1ubuntu1 [208 kB] 197s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-1ubuntu1 [144 kB] 197s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [4153 kB] 197s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 197s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB] 197s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 197s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.16.1-1 [75.1 kB] 197s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-1build1 [2577 kB] 197s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-1build1 [118 kB] 197s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 197s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-1build1 [7298 kB] 197s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-1build1 [126 kB] 198s Fetched 48.1 MB in 3s (15.1 MB/s) 198s Selecting previously unselected package fonts-dejavu-mono. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80894 files and directories currently installed.) 198s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 198s Unpacking fonts-dejavu-mono (2.37-8) ... 198s Selecting previously unselected package fonts-dejavu-core. 198s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 198s Unpacking fonts-dejavu-core (2.37-8) ... 198s Selecting previously unselected package fontconfig-config. 198s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 199s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 199s Selecting previously unselected package libfontconfig1:arm64. 199s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 199s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 199s Selecting previously unselected package fontconfig. 199s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 199s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 199s Selecting previously unselected package libaec0:arm64. 199s Preparing to unpack .../05-libaec0_1.1.3-1_arm64.deb ... 199s Unpacking libaec0:arm64 (1.1.3-1) ... 199s Selecting previously unselected package libavahi-common-data:arm64. 199s Preparing to unpack .../06-libavahi-common-data_0.8-14ubuntu1_arm64.deb ... 199s Unpacking libavahi-common-data:arm64 (0.8-14ubuntu1) ... 199s Selecting previously unselected package libavahi-common3:arm64. 199s Preparing to unpack .../07-libavahi-common3_0.8-14ubuntu1_arm64.deb ... 199s Unpacking libavahi-common3:arm64 (0.8-14ubuntu1) ... 199s Selecting previously unselected package libavahi-client3:arm64. 199s Preparing to unpack .../08-libavahi-client3_0.8-14ubuntu1_arm64.deb ... 199s Unpacking libavahi-client3:arm64 (0.8-14ubuntu1) ... 199s Selecting previously unselected package libblas3:arm64. 199s Preparing to unpack .../09-libblas3_3.12.0-4_arm64.deb ... 199s Unpacking libblas3:arm64 (3.12.0-4) ... 199s Selecting previously unselected package libcups2t64:arm64. 199s Preparing to unpack .../10-libcups2t64_2.4.11-0ubuntu2_arm64.deb ... 199s Unpacking libcups2t64:arm64 (2.4.11-0ubuntu2) ... 199s Selecting previously unselected package libdouble-conversion3:arm64. 199s Preparing to unpack .../11-libdouble-conversion3_3.3.0-1build1_arm64.deb ... 199s Unpacking libdouble-conversion3:arm64 (3.3.0-1build1) ... 199s Selecting previously unselected package libdrm-radeon1:arm64. 199s Preparing to unpack .../12-libdrm-radeon1_2.4.123-1_arm64.deb ... 199s Unpacking libdrm-radeon1:arm64 (2.4.123-1) ... 199s Selecting previously unselected package libwayland-server0:arm64. 199s Preparing to unpack .../13-libwayland-server0_1.23.0-1_arm64.deb ... 199s Unpacking libwayland-server0:arm64 (1.23.0-1) ... 199s Selecting previously unselected package libxcb-randr0:arm64. 199s Preparing to unpack .../14-libxcb-randr0_1.17.0-2_arm64.deb ... 199s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libglapi-mesa:arm64. 200s Preparing to unpack .../15-libglapi-mesa_24.2.8-1ubuntu1_arm64.deb ... 200s Unpacking libglapi-mesa:arm64 (24.2.8-1ubuntu1) ... 200s Selecting previously unselected package libx11-xcb1:arm64. 200s Preparing to unpack .../16-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 200s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 200s Selecting previously unselected package libxcb-dri2-0:arm64. 200s Preparing to unpack .../17-libxcb-dri2-0_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-dri2-0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libxcb-dri3-0:arm64. 200s Preparing to unpack .../18-libxcb-dri3-0_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libxcb-present0:arm64. 200s Preparing to unpack .../19-libxcb-present0_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libxcb-sync1:arm64. 200s Preparing to unpack .../20-libxcb-sync1_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libxcb-xfixes0:arm64. 200s Preparing to unpack .../21-libxcb-xfixes0_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libxshmfence1:arm64. 200s Preparing to unpack .../22-libxshmfence1_1.3-1build5_arm64.deb ... 200s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 200s Selecting previously unselected package mesa-libgallium:arm64. 200s Preparing to unpack .../23-mesa-libgallium_24.2.8-1ubuntu1_arm64.deb ... 200s Unpacking mesa-libgallium:arm64 (24.2.8-1ubuntu1) ... 200s Selecting previously unselected package libgbm1:arm64. 200s Preparing to unpack .../24-libgbm1_24.2.8-1ubuntu1_arm64.deb ... 200s Unpacking libgbm1:arm64 (24.2.8-1ubuntu1) ... 200s Selecting previously unselected package libwayland-client0:arm64. 200s Preparing to unpack .../25-libwayland-client0_1.23.0-1_arm64.deb ... 200s Unpacking libwayland-client0:arm64 (1.23.0-1) ... 200s Selecting previously unselected package libxcb-shm0:arm64. 200s Preparing to unpack .../26-libxcb-shm0_1.17.0-2_arm64.deb ... 200s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 200s Selecting previously unselected package libegl-mesa0:arm64. 200s Preparing to unpack .../27-libegl-mesa0_24.2.8-1ubuntu1_arm64.deb ... 200s Unpacking libegl-mesa0:arm64 (24.2.8-1ubuntu1) ... 200s Selecting previously unselected package libgfortran5:arm64. 200s Preparing to unpack .../28-libgfortran5_14.2.0-12ubuntu1_arm64.deb ... 200s Unpacking libgfortran5:arm64 (14.2.0-12ubuntu1) ... 200s Selecting previously unselected package libvulkan1:arm64. 200s Preparing to unpack .../29-libvulkan1_1.3.296.0-1_arm64.deb ... 200s Unpacking libvulkan1:arm64 (1.3.296.0-1) ... 201s Selecting previously unselected package libgl1-mesa-dri:arm64. 201s Preparing to unpack .../30-libgl1-mesa-dri_24.2.8-1ubuntu1_arm64.deb ... 201s Unpacking libgl1-mesa-dri:arm64 (24.2.8-1ubuntu1) ... 201s Selecting previously unselected package libglvnd0:arm64. 201s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_arm64.deb ... 201s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 201s Selecting previously unselected package libxcb-glx0:arm64. 201s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_arm64.deb ... 201s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 201s Selecting previously unselected package libxfixes3:arm64. 201s Preparing to unpack .../33-libxfixes3_1%3a6.0.0-2build1_arm64.deb ... 201s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ... 201s Selecting previously unselected package libxxf86vm1:arm64. 201s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 201s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 201s Selecting previously unselected package libglx-mesa0:arm64. 201s Preparing to unpack .../35-libglx-mesa0_24.2.8-1ubuntu1_arm64.deb ... 201s Unpacking libglx-mesa0:arm64 (24.2.8-1ubuntu1) ... 201s Selecting previously unselected package libglx0:arm64. 201s Preparing to unpack .../36-libglx0_1.7.0-1build1_arm64.deb ... 201s Unpacking libglx0:arm64 (1.7.0-1build1) ... 201s Selecting previously unselected package libgl1:arm64. 201s Preparing to unpack .../37-libgl1_1.7.0-1build1_arm64.deb ... 201s Unpacking libgl1:arm64 (1.7.0-1build1) ... 201s Selecting previously unselected package libglew2.2:arm64. 201s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_arm64.deb ... 201s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 201s Selecting previously unselected package libgomp1:arm64. 201s Preparing to unpack .../39-libgomp1_14.2.0-12ubuntu1_arm64.deb ... 201s Unpacking libgomp1:arm64 (14.2.0-12ubuntu1) ... 201s Selecting previously unselected package libgraphite2-3:arm64. 201s Preparing to unpack .../40-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 201s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 201s Selecting previously unselected package libharfbuzz0b:arm64. 201s Preparing to unpack .../41-libharfbuzz0b_10.1.0-1_arm64.deb ... 201s Unpacking libharfbuzz0b:arm64 (10.1.0-1) ... 201s Selecting previously unselected package libsz2:arm64. 201s Preparing to unpack .../42-libsz2_1.1.3-1_arm64.deb ... 201s Unpacking libsz2:arm64 (1.1.3-1) ... 201s Selecting previously unselected package libhdf5-103-1t64:arm64. 201s Preparing to unpack .../43-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_arm64.deb ... 201s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 201s Selecting previously unselected package libhdf5-hl-100t64:arm64. 201s Preparing to unpack .../44-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_arm64.deb ... 201s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 201s Selecting previously unselected package x11-common. 201s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 201s Unpacking x11-common (1:7.7+23ubuntu3) ... 201s Selecting previously unselected package libice6:arm64. 201s Preparing to unpack .../46-libice6_2%3a1.1.1-1_arm64.deb ... 201s Unpacking libice6:arm64 (2:1.1.1-1) ... 201s Selecting previously unselected package libwacom-common. 201s Preparing to unpack .../47-libwacom-common_2.13.0-1_all.deb ... 201s Unpacking libwacom-common (2.13.0-1) ... 202s Selecting previously unselected package libwacom9:arm64. 202s Preparing to unpack .../48-libwacom9_2.13.0-1_arm64.deb ... 202s Unpacking libwacom9:arm64 (2.13.0-1) ... 202s Selecting previously unselected package libinput-bin. 202s Preparing to unpack .../49-libinput-bin_1.26.2-1_arm64.deb ... 202s Unpacking libinput-bin (1.26.2-1) ... 202s Selecting previously unselected package libmtdev1t64:arm64. 202s Preparing to unpack .../50-libmtdev1t64_1.1.6-1.2_arm64.deb ... 202s Unpacking libmtdev1t64:arm64 (1.1.6-1.2) ... 202s Selecting previously unselected package libinput10:arm64. 202s Preparing to unpack .../51-libinput10_1.26.2-1_arm64.deb ... 202s Unpacking libinput10:arm64 (1.26.2-1) ... 202s Selecting previously unselected package libjpeg-turbo8:arm64. 202s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 202s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 202s Selecting previously unselected package libjpeg8:arm64. 202s Preparing to unpack .../53-libjpeg8_8c-2ubuntu11_arm64.deb ... 202s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package liblapack3:arm64. 202s Preparing to unpack .../54-liblapack3_3.12.0-4_arm64.deb ... 202s Unpacking liblapack3:arm64 (3.12.0-4) ... 202s Selecting previously unselected package libmd4c0:arm64. 202s Preparing to unpack .../55-libmd4c0_0.5.2-2_arm64.deb ... 202s Unpacking libmd4c0:arm64 (0.5.2-2) ... 202s Selecting previously unselected package libnetcdf19t64:arm64. 202s Preparing to unpack .../56-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ... 202s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 202s Selecting previously unselected package libpcre2-16-0:arm64. 202s Preparing to unpack .../57-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 202s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 202s Selecting previously unselected package libqt5core5t64:arm64. 202s Preparing to unpack .../58-libqt5core5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 202s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 202s Selecting previously unselected package libqt5dbus5t64:arm64. 202s Preparing to unpack .../59-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 202s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 202s Selecting previously unselected package libegl1:arm64. 202s Preparing to unpack .../60-libegl1_1.7.0-1build1_arm64.deb ... 202s Unpacking libegl1:arm64 (1.7.0-1build1) ... 202s Selecting previously unselected package libqt5network5t64:arm64. 202s Preparing to unpack .../61-libqt5network5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 202s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 202s Selecting previously unselected package libsm6:arm64. 202s Preparing to unpack .../62-libsm6_2%3a1.2.4-1_arm64.deb ... 202s Unpacking libsm6:arm64 (2:1.2.4-1) ... 202s Selecting previously unselected package libxcb-icccm4:arm64. 202s Preparing to unpack .../63-libxcb-icccm4_0.4.2-1_arm64.deb ... 202s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 202s Selecting previously unselected package libxcb-util1:arm64. 202s Preparing to unpack .../64-libxcb-util1_0.4.0-1build3_arm64.deb ... 202s Unpacking libxcb-util1:arm64 (0.4.0-1build3) ... 202s Selecting previously unselected package libxcb-image0:arm64. 203s Preparing to unpack .../65-libxcb-image0_0.4.0-2build1_arm64.deb ... 203s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 203s Selecting previously unselected package libxcb-keysyms1:arm64. 203s Preparing to unpack .../66-libxcb-keysyms1_0.4.0-1build4_arm64.deb ... 203s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build4) ... 203s Selecting previously unselected package libxcb-render0:arm64. 203s Preparing to unpack .../67-libxcb-render0_1.17.0-2_arm64.deb ... 203s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 203s Selecting previously unselected package libxcb-render-util0:arm64. 203s Preparing to unpack .../68-libxcb-render-util0_0.3.9-1build4_arm64.deb ... 203s Unpacking libxcb-render-util0:arm64 (0.3.9-1build4) ... 203s Selecting previously unselected package libxcb-shape0:arm64. 203s Preparing to unpack .../69-libxcb-shape0_1.17.0-2_arm64.deb ... 203s Unpacking libxcb-shape0:arm64 (1.17.0-2) ... 203s Selecting previously unselected package libxcb-xinerama0:arm64. 203s Preparing to unpack .../70-libxcb-xinerama0_1.17.0-2_arm64.deb ... 203s Unpacking libxcb-xinerama0:arm64 (1.17.0-2) ... 203s Selecting previously unselected package libxcb-xinput0:arm64. 203s Preparing to unpack .../71-libxcb-xinput0_1.17.0-2_arm64.deb ... 203s Unpacking libxcb-xinput0:arm64 (1.17.0-2) ... 203s Selecting previously unselected package libxcb-xkb1:arm64. 203s Preparing to unpack .../72-libxcb-xkb1_1.17.0-2_arm64.deb ... 203s Unpacking libxcb-xkb1:arm64 (1.17.0-2) ... 203s Selecting previously unselected package libxkbcommon-x11-0:arm64. 203s Preparing to unpack .../73-libxkbcommon-x11-0_1.7.0-2_arm64.deb ... 203s Unpacking libxkbcommon-x11-0:arm64 (1.7.0-2) ... 203s Selecting previously unselected package libxrender1:arm64. 203s Preparing to unpack .../74-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 203s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 203s Selecting previously unselected package libqt5gui5t64:arm64. 203s Preparing to unpack .../75-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 203s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 203s Selecting previously unselected package libqt5widgets5t64:arm64. 203s Preparing to unpack .../76-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 203s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 203s Selecting previously unselected package libqt5xml5t64:arm64. 203s Preparing to unpack .../77-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 203s Unpacking libqt5xml5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 203s Selecting previously unselected package libqt5designer5:arm64. 203s Preparing to unpack .../78-libqt5designer5_5.15.15-4_arm64.deb ... 203s Unpacking libqt5designer5:arm64 (5.15.15-4) ... 203s Selecting previously unselected package libqt5sql5t64:arm64. 203s Preparing to unpack .../79-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 203s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 203s Selecting previously unselected package libqt5help5:arm64. 203s Preparing to unpack .../80-libqt5help5_5.15.15-4_arm64.deb ... 203s Unpacking libqt5help5:arm64 (5.15.15-4) ... 203s Selecting previously unselected package libqt5opengl5t64:arm64. 203s Preparing to unpack .../81-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 203s Unpacking libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 204s Selecting previously unselected package libqt5printsupport5t64:arm64. 204s Preparing to unpack .../82-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 204s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 204s Selecting previously unselected package libqt5test5t64:arm64. 204s Preparing to unpack .../83-libqt5test5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 204s Unpacking libqt5test5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 204s Selecting previously unselected package python3-numpy. 204s Preparing to unpack .../84-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... 204s Unpacking python3-numpy (1:1.26.4+ds-12) ... 204s Selecting previously unselected package libopengl0:arm64. 204s Preparing to unpack .../85-libopengl0_1.7.0-1build1_arm64.deb ... 204s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 204s Selecting previously unselected package libglu1-mesa:arm64. 204s Preparing to unpack .../86-libglu1-mesa_9.0.2-1.1build1_arm64.deb ... 204s Unpacking libglu1-mesa:arm64 (9.0.2-1.1build1) ... 204s Selecting previously unselected package python3-opengl. 204s Preparing to unpack .../87-python3-opengl_3.1.7+dfsg-1_all.deb ... 204s Unpacking python3-opengl (3.1.7+dfsg-1) ... 204s Selecting previously unselected package python3-pyqt5.sip. 204s Preparing to unpack .../88-python3-pyqt5.sip_12.16.1-1_arm64.deb ... 204s Unpacking python3-pyqt5.sip (12.16.1-1) ... 204s Selecting previously unselected package python3-pyqt5. 204s Preparing to unpack .../89-python3-pyqt5_5.15.11+dfsg-1build1_arm64.deb ... 204s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 204s Selecting previously unselected package python3-pyqt5.qtopengl. 204s Preparing to unpack .../90-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_arm64.deb ... 204s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 205s Selecting previously unselected package pymol-data. 205s Preparing to unpack .../91-pymol-data_3.0.0+dfsg-1build1_all.deb ... 205s Unpacking pymol-data (3.0.0+dfsg-1build1) ... 205s Selecting previously unselected package python3-pymol. 205s Preparing to unpack .../92-python3-pymol_3.0.0+dfsg-1build1_arm64.deb ... 205s Unpacking python3-pymol (3.0.0+dfsg-1build1) ... 205s Selecting previously unselected package pymol. 205s Preparing to unpack .../93-pymol_3.0.0+dfsg-1build1_all.deb ... 205s Unpacking pymol (3.0.0+dfsg-1build1) ... 205s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 205s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 205s Setting up libwayland-server0:arm64 (1.23.0-1) ... 205s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 205s Setting up libdouble-conversion3:arm64 (3.3.0-1build1) ... 205s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 205s Setting up libxcb-xinput0:arm64 (1.17.0-2) ... 205s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 205s Setting up libxcb-render0:arm64 (1.17.0-2) ... 205s Setting up libdrm-radeon1:arm64 (2.4.123-1) ... 205s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 205s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 205s Setting up libxcb-keysyms1:arm64 (0.4.0-1build4) ... 205s Setting up libxcb-shape0:arm64 (1.17.0-2) ... 205s Setting up x11-common (1:7.7+23ubuntu3) ... 205s Setting up libxcb-render-util0:arm64 (0.3.9-1build4) ... 205s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 205s Setting up libxcb-icccm4:arm64 (0.4.2-1) ... 205s Setting up libgomp1:arm64 (14.2.0-12ubuntu1) ... 205s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 205s Setting up libaec0:arm64 (1.1.3-1) ... 205s Setting up libopengl0:arm64 (1.7.0-1build1) ... 205s Setting up libxcb-util1:arm64 (0.4.0-1build3) ... 205s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 205s Setting up libxcb-xkb1:arm64 (1.17.0-2) ... 205s Setting up libxcb-image0:arm64 (0.4.0-2build1) ... 206s Setting up libxcb-present0:arm64 (1.17.0-2) ... 206s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libblas3:arm64 (3.12.0-4) ... 206s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 206s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ... 206s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ... 206s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 206s Setting up libavahi-common-data:arm64 (0.8-14ubuntu1) ... 206s Setting up pymol-data (3.0.0+dfsg-1build1) ... 206s Setting up libxkbcommon-x11-0:arm64 (1.7.0-2) ... 206s Setting up fonts-dejavu-mono (2.37-8) ... 206s Setting up fonts-dejavu-core (2.37-8) ... 206s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 206s Setting up libglapi-mesa:arm64 (24.2.8-1ubuntu1) ... 206s Setting up libgfortran5:arm64 (14.2.0-12ubuntu1) ... 206s Setting up libvulkan1:arm64 (1.3.296.0-1) ... 206s Setting up libxcb-dri2-0:arm64 (1.17.0-2) ... 206s Setting up python3-pyqt5.sip (12.16.1-1) ... 206s Setting up libmtdev1t64:arm64 (1.1.6-1.2) ... 206s Setting up libxshmfence1:arm64 (1.3-1build5) ... 206s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 206s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libmd4c0:arm64 (0.5.2-2) ... 206s Setting up libharfbuzz0b:arm64 (10.1.0-1) ... 206s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ... 206s Setting up libsz2:arm64 (1.1.3-1) ... 206s Setting up libwacom-common (2.13.0-1) ... 206s Setting up libwayland-client0:arm64 (1.23.0-1) ... 206s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 206s Setting up libice6:arm64 (2:1.1.1-1) ... 206s Setting up mesa-libgallium:arm64 (24.2.8-1ubuntu1) ... 206s Setting up liblapack3:arm64 (3.12.0-4) ... 206s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 206s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libgbm1:arm64 (24.2.8-1ubuntu1) ... 206s Setting up libwacom9:arm64 (2.13.0-1) ... 206s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 206s Setting up libgl1-mesa-dri:arm64 (24.2.8-1ubuntu1) ... 206s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libavahi-common3:arm64 (0.8-14ubuntu1) ... 206s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 206s Setting up libinput-bin (1.26.2-1) ... 206s Setting up libegl-mesa0:arm64 (24.2.8-1ubuntu1) ... 206s Setting up python3-numpy (1:1.26.4+ds-12) ... 208s Setting up libegl1:arm64 (1.7.0-1build1) ... 208s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 208s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-5ubuntu1) ... 208s Setting up libsm6:arm64 (2:1.2.4-1) ... 208s Setting up libavahi-client3:arm64 (0.8-14ubuntu1) ... 208s Setting up libinput10:arm64 (1.26.2-1) ... 208s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-5ubuntu1) ... 208s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 210s Regenerating fonts cache... done. 210s Setting up libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 210s Setting up libglx-mesa0:arm64 (24.2.8-1ubuntu1) ... 210s Setting up libglx0:arm64 (1.7.0-1build1) ... 210s Setting up libgl1:arm64 (1.7.0-1build1) ... 210s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 210s Setting up libcups2t64:arm64 (2.4.11-0ubuntu2) ... 210s Setting up python3-opengl (3.1.7+dfsg-1) ... 211s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 211s '''OpenGL extension AMD.vertex_shader_tessellator 213s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 213s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 213s Setting up libqt5help5:arm64 (5.15.15-4) ... 213s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 213s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 213s Setting up libqt5designer5:arm64 (5.15.15-4) ... 213s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 213s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 213s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 214s Setting up pymol (3.0.0+dfsg-1build1) ... 214s Processing triggers for libc-bin (2.40-4ubuntu1) ... 214s Processing triggers for man-db (2.13.0-1) ... 215s Processing triggers for udev (257-2ubuntu1) ... 217s autopkgtest [17:25:12]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 217s autopkgtest [17:25:12]: test command1: [----------------------- 217s Search pymol scripts in /tmp/autopkgtest.20Dgji/build.4R8/src/examples... 217s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/examples 217s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/chempy/generate_amber.py'... 217s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/chempy/generate_mmff.py'... 218s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/area_diff.pml'... 219s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/build_peptide.py'... 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/contact.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/dali.py 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/density.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/groel_es.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/multiclip_ray.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/packing.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/packsurf.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ref_frame.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ribosome.pml 219s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/scenes2movie.pml 219s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/seq_match_sele.pml'... 222s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ss_xfer.pml 222s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/symsph.py'... 222s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/brick01.py'... 223s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo01.py'... 223s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo02.py'... 226s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo03.py'... 230s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo04.py'... 230s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo05.py'... 231s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo06.py'... 232s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo07.py'... 233s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo08.py'... 233s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_3Dtext01.py'... 233s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_axes.py'... 234s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_label_hack.py'... 237s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_plane.py'... 237s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model01.py'... 238s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model02.py'... 238s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model03.py'... 242s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/click_ordered_list.py'... 242s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/count_molecules.py'... 242s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/extend_demo01.py'... 243s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl01.py'... 243s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl02.py'... 244s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl03.py'... 248s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/importing.py 248s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/link_demo.py'... 248s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/membrane.py'... 249s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/mutate01.pml'... 250s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/mutate02.py'... 252s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/my_ext_gui.py'... 252s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/particle01.py'... 253s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/particle02.py'... 253s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/pick_wiz.py'... 253s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/povray01.py 253s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/scenes_to_movie01.pml'... 254s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/sd_annotate.pml 254s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/sele_wiz.py'... 254s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/start_pymol.py 254s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/syncmol.py'... 254s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/tkwindow.py 254s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui01.py'... 255s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 255s Copyright (c) Schrodinger, LLC. 255s All Rights Reserved. 255s 255s Created by Warren L. DeLano, Ph.D. 255s 255s PyMOL is user-supported open-source software. Although some versions 255s are freely available, PyMOL is not in the public domain. 255s 255s If PyMOL is helpful in your work or study, then please volunteer 255s support for our ongoing efforts to create open and affordable scientific 255s software by purchasing a PyMOL Maintenance and/or Support subscription. 255s 255s More information can be found at "http://www.pymol.org". 255s 255s Enter "help" for a list of commands. 255s Enter "help " for information on a specific command. 255s 255s Hit ESC anytime to toggle between text and graphics. 255s 255s Detected 2 CPU cores. Enabled multithreaded rendering. 255s Traceback (most recent call last): 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 255s run_(path, ns_pymol, ns_pymol) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 255s execfile(file,global_ns,local_ns) 255s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 255s exec(co, global_ns, local_ns) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui01.py", line 7, in 255s import cgi 255s ModuleNotFoundError: No module named 'cgi' 255s  not ok - error-related patterns were found in pymol output 255s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py'... 255s /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 255s mo = re.search("molid\=([A-Z0-9]+)",self.path) 255s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 255s Copyright (c) Schrodinger, LLC. 255s All Rights Reserved. 255s 255s Created by Warren L. DeLano, Ph.D. 255s 255s PyMOL is user-supported open-source software. Although some versions 255s are freely available, PyMOL is not in the public domain. 255s 255s If PyMOL is helpful in your work or study, then please volunteer 255s support for our ongoing efforts to create open and affordable scientific 255s software by purchasing a PyMOL Maintenance and/or Support subscription. 255s 255s More information can be found at "http://www.pymol.org". 255s 255s Enter "help" for a list of commands. 255s Enter "help " for information on a specific command. 255s 255s Hit ESC anytime to toggle between text and graphics. 255s 255s /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 255s mo = re.search("molid\=([A-Z0-9]+)",self.path) 255s Detected 2 CPU cores. Enabled multithreaded rendering. 255s Traceback (most recent call last): 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 255s run_(path, ns_pymol, ns_pymol) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 255s execfile(file,global_ns,local_ns) 255s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 255s exec(co, global_ns, local_ns) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py", line 10, in 255s import cgi 255s ModuleNotFoundError: No module named 'cgi' 255s  not ok - error-related patterns were found in pymol output 255s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/xmlrpc01.py 255s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/xmlrpc02.py'... 255s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_demo.py'... 256s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_viewer1.py'... 256s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_viewer2.py'... 256s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/examples/chempy 256s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/chempy/generate_amber.py'... 256s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/chempy/generate_mmff.py'... 257s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook 257s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/area_diff.pml'... 258s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/build_peptide.py'... 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/contact.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/dali.py 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/density.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/groel_es.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/multiclip_ray.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/packing.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/packsurf.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ref_frame.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ribosome.pml 258s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/scenes2movie.pml 258s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/seq_match_sele.pml'... 260s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/ss_xfer.pml 261s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/cookbook/symsph.py'... 261s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel 261s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/brick01.py'... 261s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo01.py'... 262s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo02.py'... 265s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo03.py'... 269s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo04.py'... 269s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo05.py'... 270s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo06.py'... 271s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo07.py'... 271s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo08.py'... 272s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_3Dtext01.py'... 272s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_axes.py'... 273s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_label_hack.py'... 276s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/cgo_plane.py'... 276s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model01.py'... 277s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model02.py'... 277s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/chempy_model03.py'... 281s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/click_ordered_list.py'... 281s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/count_molecules.py'... 282s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/extend_demo01.py'... 283s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl01.py'... 283s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl02.py'... 285s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/gl03.py'... 289s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/importing.py 289s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/link_demo.py'... 289s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/membrane.py'... 290s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/mutate01.pml'... 290s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/mutate02.py'... 293s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/my_ext_gui.py'... 293s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/particle01.py'... 294s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/particle02.py'... 295s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/pick_wiz.py'... 295s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/povray01.py 295s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/scenes_to_movie01.pml'... 296s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/sd_annotate.pml 296s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/sele_wiz.py'... 296s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/start_pymol.py 296s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/syncmol.py'... 297s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/tkwindow.py 297s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui01.py'... 298s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 298s Copyright (c) Schrodinger, LLC. 298s All Rights Reserved. 298s 298s Created by Warren L. DeLano, Ph.D. 298s 298s PyMOL is user-supported open-source software. Although some versions 298s are freely available, PyMOL is not in the public domain. 298s 298s If PyMOL is helpful in your work or study, then please volunteer 298s support for our ongoing efforts to create open and affordable scientific 298s software by purchasing a PyMOL Maintenance and/or Support subscription. 298s 298s More information can be found at "http://www.pymol.org". 298s 298s Enter "help" for a list of commands. 298s Enter "help " for information on a specific command. 298s 298s Hit ESC anytime to toggle between text and graphics. 298s 298s Detected 2 CPU cores. Enabled multithreaded rendering. 298s Traceback (most recent call last): 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 298s run_(path, ns_pymol, ns_pymol) 298s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 298s execfile(file,global_ns,local_ns) 298s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 298s exec(co, global_ns, local_ns) 298s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui01.py", line 7, in 298s import cgi 298s ModuleNotFoundError: No module named 'cgi' 298s  not ok - error-related patterns were found in pymol output 298s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py'... 298s /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 298s mo = re.search("molid\=([A-Z0-9]+)",self.path) 298s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 298s Copyright (c) Schrodinger, LLC. 298s All Rights Reserved. 298s 298s Created by Warren L. DeLano, Ph.D. 298s 298s PyMOL is user-supported open-source software. Although some versions 298s are freely available, PyMOL is not in the public domain. 298s 298s If PyMOL is helpful in your work or study, then please volunteer 298s support for our ongoing efforts to create open and affordable scientific 298s software by purchasing a PyMOL Maintenance and/or Support subscription. 298s 298s More information can be found at "http://www.pymol.org". 298s 298s Enter "help" for a list of commands. 298s Enter "help " for information on a specific command. 298s 298s Hit ESC anytime to toggle between text and graphics. 298s 298s /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 298s mo = re.search("molid\=([A-Z0-9]+)",self.path) 298s Detected 2 CPU cores. Enabled multithreaded rendering. 298s Traceback (most recent call last): 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 298s run_(path, ns_pymol, ns_pymol) 298s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 298s execfile(file,global_ns,local_ns) 298s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 298s exec(co, global_ns, local_ns) 298s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 298s File "/tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/webgui02.py", line 10, in 298s import cgi 298s ModuleNotFoundError: No module named 'cgi' 298s  not ok - error-related patterns were found in pymol output 298s Skip /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/xmlrpc01.py 298s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/devel/xmlrpc02.py'... 299s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching 299s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_demo.py'... 299s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_viewer1.py'... 299s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/examples/launching/launch_viewer2.py'... 300s autopkgtest [17:26:35]: test command1: -----------------------] 300s command1 PASS (superficial) 300s autopkgtest [17:26:35]: test command1: - - - - - - - - - - results - - - - - - - - - - 300s autopkgtest [17:26:35]: test command2: preparing testbed 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 302s Done 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 303s autopkgtest [17:26:38]: test command2: sh debian/tests/call-pymol-scripts data/demo 303s autopkgtest [17:26:38]: test command2: [----------------------- 303s Search pymol scripts in /tmp/autopkgtest.20Dgji/build.4R8/src/data/demo... 303s Processing new directory /tmp/autopkgtest.20Dgji/build.4R8/src/data/demo 303s Run 'pymol -c /tmp/autopkgtest.20Dgji/build.4R8/src/data/demo/cgo03.py'... 307s autopkgtest [17:26:42]: test command2: -----------------------] 307s command2 PASS (superficial) 307s autopkgtest [17:26:42]: test command2: - - - - - - - - - - results - - - - - - - - - - 308s autopkgtest [17:26:43]: test command3: preparing testbed 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 309s Starting pkgProblemResolver with broken count: 0 309s Starting 2 pkgProblemResolver with broken count: 0 309s Done 310s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s autopkgtest [17:26:45]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 310s autopkgtest [17:26:45]: test command3: [----------------------- 311s Search pymol scripts in /usr/share/pymol/examples... 311s Processing new directory /usr/share/pymol/examples 311s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 311s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 311s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 311s Skip /usr/share/pymol/examples/cookbook/contact.pml 311s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 311s Skip /usr/share/pymol/examples/cookbook/packing.pml 311s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 311s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 311s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 311s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 311s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 311s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 311s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 312s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 320s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 320s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 320s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 320s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 324s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 324s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 324s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 324s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 333s Skip /usr/share/pymol/examples/devel/importing.py 333s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 334s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 335s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 335s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 337s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 337s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 337s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 337s Skip /usr/share/pymol/examples/devel/tkwindow.py 337s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 337s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 337s Copyright (c) Schrodinger, LLC. 337s All Rights Reserved. 337s 337s Created by Warren L. DeLano, Ph.D. 337s 337s PyMOL is user-supported open-source software. Although some versions 337s are freely available, PyMOL is not in the public domain. 337s 337s If PyMOL is helpful in your work or study, then please volunteer 337s support for our ongoing efforts to create open and affordable scientific 337s software by purchasing a PyMOL Maintenance and/or Support subscription. 337s 337s More information can be found at "http://www.pymol.org". 337s 337s Enter "help" for a list of commands. 337s Enter "help " for information on a specific command. 337s 337s Hit ESC anytime to toggle between text and graphics. 337s 337s Detected 2 CPU cores. Enabled multithreaded rendering. 337s Traceback (most recent call last): 337s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 337s run_(path, ns_pymol, ns_pymol) 337s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 337s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 337s execfile(file,global_ns,local_ns) 337s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 337s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 337s exec(co, global_ns, local_ns) 337s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 337s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 337s import cgi 337s ModuleNotFoundError: No module named 'cgi' 337s  not ok - error-related patterns were found in pymol output 337s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 338s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 338s mo = re.search("molid\=([A-Z0-9]+)",self.path) 338s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 338s Copyright (c) Schrodinger, LLC. 338s All Rights Reserved. 338s 338s Created by Warren L. DeLano, Ph.D. 338s 338s PyMOL is user-supported open-source software. Although some versions 338s are freely available, PyMOL is not in the public domain. 338s 338s If PyMOL is helpful in your work or study, then please volunteer 338s support for our ongoing efforts to create open and affordable scientific 338s software by purchasing a PyMOL Maintenance and/or Support subscription. 338s 338s More information can be found at "http://www.pymol.org". 338s 338s Enter "help" for a list of commands. 338s Enter "help " for information on a specific command. 338s 338s Hit ESC anytime to toggle between text and graphics. 338s 338s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 338s mo = re.search("molid\=([A-Z0-9]+)",self.path) 338s Detected 2 CPU cores. Enabled multithreaded rendering. 338s Traceback (most recent call last): 338s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 338s run_(path, ns_pymol, ns_pymol) 338s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 338s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 338s execfile(file,global_ns,local_ns) 338s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 338s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 338s exec(co, global_ns, local_ns) 338s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 338s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 338s import cgi 338s ModuleNotFoundError: No module named 'cgi' 338s  not ok - error-related patterns were found in pymol output 338s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 338s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 338s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 338s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 338s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 339s Processing new directory /usr/share/pymol/examples/chempy 339s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 339s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 339s Processing new directory /usr/share/pymol/examples/cookbook 339s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 339s Skip /usr/share/pymol/examples/cookbook/contact.pml 339s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 339s Skip /usr/share/pymol/examples/cookbook/packing.pml 339s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 339s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 339s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 339s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 339s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 339s Processing new directory /usr/share/pymol/examples/devel 339s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 340s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 340s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 347s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 347s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 348s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 349s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 351s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 355s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 359s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 359s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 359s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 363s Skip /usr/share/pymol/examples/devel/importing.py 363s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 363s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 364s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 364s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 365s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 366s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 366s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 366s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 367s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 367s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 367s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 367s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 367s Skip /usr/share/pymol/examples/devel/tkwindow.py 367s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 368s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 368s Copyright (c) Schrodinger, LLC. 368s All Rights Reserved. 368s 368s Created by Warren L. DeLano, Ph.D. 368s 368s PyMOL is user-supported open-source software. Although some versions 368s are freely available, PyMOL is not in the public domain. 368s 368s If PyMOL is helpful in your work or study, then please volunteer 368s support for our ongoing efforts to create open and affordable scientific 368s software by purchasing a PyMOL Maintenance and/or Support subscription. 368s 368s More information can be found at "http://www.pymol.org". 368s 368s Enter "help" for a list of commands. 368s Enter "help " for information on a specific command. 368s 368s Hit ESC anytime to toggle between text and graphics. 368s 368s Detected 2 CPU cores. Enabled multithreaded rendering. 368s Traceback (most recent call last): 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 368s run_(path, ns_pymol, ns_pymol) 368s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 368s execfile(file,global_ns,local_ns) 368s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 368s exec(co, global_ns, local_ns) 368s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 368s import cgi 368s ModuleNotFoundError: No module named 'cgi' 368s  not ok - error-related patterns were found in pymol output 368s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 368s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 368s mo = re.search("molid\=([A-Z0-9]+)",self.path) 368s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 368s Copyright (c) Schrodinger, LLC. 368s All Rights Reserved. 368s 368s Created by Warren L. DeLano, Ph.D. 368s 368s PyMOL is user-supported open-source software. Although some versions 368s are freely available, PyMOL is not in the public domain. 368s 368s If PyMOL is helpful in your work or study, then please volunteer 368s support for our ongoing efforts to create open and affordable scientific 368s software by purchasing a PyMOL Maintenance and/or Support subscription. 368s 368s More information can be found at "http://www.pymol.org". 368s 368s Enter "help" for a list of commands. 368s Enter "help " for information on a specific command. 368s 368s Hit ESC anytime to toggle between text and graphics. 368s 368s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 368s mo = re.search("molid\=([A-Z0-9]+)",self.path) 368s Detected 2 CPU cores. Enabled multithreaded rendering. 368s Traceback (most recent call last): 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 368s run_(path, ns_pymol, ns_pymol) 368s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 368s execfile(file,global_ns,local_ns) 368s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 368s exec(co, global_ns, local_ns) 368s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 368s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 368s import cgi 368s ModuleNotFoundError: No module named 'cgi' 368s  not ok - error-related patterns were found in pymol output 368s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 368s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 368s Processing new directory /usr/share/pymol/examples/launching 368s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 369s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 369s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 369s autopkgtest [17:27:44]: test command3: -----------------------] 370s command3 PASS (superficial) 370s autopkgtest [17:27:45]: test command3: - - - - - - - - - - results - - - - - - - - - - 370s autopkgtest [17:27:45]: test command4: preparing testbed 370s Reading package lists... 371s Building dependency tree... 371s Reading state information... 371s Starting pkgProblemResolver with broken count: 0 371s Starting 2 pkgProblemResolver with broken count: 0 371s Done 372s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 373s autopkgtest [17:27:48]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 373s autopkgtest [17:27:48]: test command4: [----------------------- 373s Search pymol scripts in /usr/share/pymol/examples/cookbook... 373s Processing new directory /usr/share/pymol/examples/cookbook 373s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 374s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 375s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 375s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 376s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 405s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 407s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 407s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 409s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 411s autopkgtest [17:28:26]: test command4: -----------------------] 411s command4 PASS (superficial) 411s autopkgtest [17:28:26]: test command4: - - - - - - - - - - results - - - - - - - - - - 411s autopkgtest [17:28:26]: test command5: preparing testbed 412s Reading package lists... 412s Building dependency tree... 412s Reading state information... 412s Starting pkgProblemResolver with broken count: 0 412s Starting 2 pkgProblemResolver with broken count: 0 412s Done 413s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 414s autopkgtest [17:28:29]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 414s autopkgtest [17:28:29]: test command5: [----------------------- 414s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 414s Copyright (c) Schrodinger, LLC. 414s All Rights Reserved. 414s 414s Created by Warren L. DeLano, Ph.D. 414s 414s PyMOL is user-supported open-source software. Although some versions 414s are freely available, PyMOL is not in the public domain. 414s 414s If PyMOL is helpful in your work or study, then please volunteer 414s support for our ongoing efforts to create open and affordable scientific 414s software by purchasing a PyMOL Maintenance and/or Support subscription. 414s 414s More information can be found at "http://www.pymol.org". 414s 414s Enter "help" for a list of commands. 414s Enter "help " for information on a specific command. 414s 414s Hit ESC anytime to toggle between text and graphics. 414s 414s Setting: wizard_prompt_mode set to 3. 414s Detected 2 CPU cores. Enabled multithreaded rendering. 414s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 414s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 414s PyMOL>wizard annotation 414s PyMOL>set wizard_prompt_mode,3 414s PyMOL>load_annotated_sdf demo.sdf 414s HBA ['[1, 25, 26, 34]\n'] 414s HBD ['[20]\n'] 414s ACD_NUMBER ['MFCD02681585\n'] 414s SCORE ['-222.044\n'] 414s MOLID ['MFCD02681585\n'] 414s HBA ['[1, 21]\n'] 414s HBD ['[]\n'] 414s ACD_NUMBER ['MFCD01567969\n'] 414s SCORE ['-219.984\n'] 414s MOLID ['MFCD01567969\n'] 414s HBA ['[1, 24]\n'] 414s HBD ['[10, 22]\n'] 414s ACD_NUMBER ['MFCD00023789\n'] 414s SCORE ['-219.911\n'] 414s MOLID ['MFCD00023789\n'] 414s HBA ['[1, 11]\n'] 414s HBD ['[3]\n'] 414s ACD_NUMBER ['MFCD02579443\n'] 414s SCORE ['-219.769\n'] 414s MOLID ['MFCD02579443\n'] 414s HBA ['[1, 11]\n'] 414s HBD ['[9]\n'] 414s ACD_NUMBER ['MFCD02579410\n'] 414s SCORE ['-214.809\n'] 414s MOLID ['MFCD02579410\n'] 414s HBA ['[1, 20, 22, 27, 32]\n'] 414s HBD ['[10, 20]\n'] 414s ACD_NUMBER ['MFCD02579135\n'] 414s SCORE ['-213.630\n'] 414s MOLID ['MFCD02579135\n'] 414s HBA ['[1, 11, 14, 21]\n'] 414s HBD ['[]\n'] 414s ACD_NUMBER ['MFCD02681468\n'] 414s SCORE ['-213.462\n'] 414s MOLID ['MFCD02681468\n'] 414s HBA ['[1, 13, 14, 29]\n'] 414s HBD ['[]\n'] 414s ACD_NUMBER ['MFCD00141070\n'] 414s SCORE ['-213.240\n'] 414s MOLID ['MFCD00141070\n'] 414s HBA ['[1, 8]\n'] 414s HBD ['[]\n'] 414s ACD_NUMBER ['MFCD02983625\n'] 414s SCORE ['-211.422\n'] 414s MOLID ['MFCD02983625\n'] 414s HBA ['[1, 11]\n'] 414s HBD ['[3, 12]\n'] 414s ACD_NUMBER ['MFCD00115818\n'] 414s SCORE ['-210.482\n'] 414s MOLID ['MFCD00115818\n'] 415s autopkgtest [17:28:30]: test command5: -----------------------] 415s command5 PASS (superficial) 415s autopkgtest [17:28:30]: test command5: - - - - - - - - - - results - - - - - - - - - - 416s autopkgtest [17:28:31]: @@@@@@@@@@@@@@@@@@@@ summary 416s command1 PASS (superficial) 416s command2 PASS (superficial) 416s command3 PASS (superficial) 416s command4 PASS (superficial) 416s command5 PASS (superficial) 433s nova [W] Using flock in prodstack6-arm64 433s Creating nova instance adt-plucky-arm64-pymol-20250103-172135-juju-7f2275-prod-proposed-migration-environment-15-32367dc7-dd0e-4473-8316-0583d9d412f1 from image adt/ubuntu-plucky-arm64-server-20250102.img (UUID 4cb073f4-4206-4362-b576-2406cb25ddd8)... 433s nova [W] Timed out waiting for 6c4021e4-dbae-4257-b739-b9e8cf7ed703 to get deleted.