0s autopkgtest [16:24:10]: starting date and time: 2024-11-14 16:24:10+0000
  0s autopkgtest [16:24:10]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:24:10]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qrrps6kk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-43.secgroup --name adt-plucky-arm64-pymol-20241114-162409-juju-7f2275-prod-proposed-migration-environment-15-eb6a7be9-c576-430a-9d0f-4cb6c505a029 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 74s autopkgtest [16:25:24]: testbed dpkg architecture: arm64
 74s autopkgtest [16:25:24]: testbed apt version: 2.9.8
 74s autopkgtest [16:25:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 76s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [966 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [138 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [724 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6012 B]
 76s Fetched 2085 kB in 1s (2323 kB/s)
 76s Reading package lists...
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s Calculating upgrade...
 80s The following packages will be upgraded:
 80s   pastebinit python3-systemd
 80s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 80s Need to get 61.6 kB of archives.
 80s After this operation, 347 kB of additional disk space will be used.
 80s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 pastebinit all 1.7.1-1 [14.9 kB]
 80s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-systemd arm64 235-1build5 [46.7 kB]
 81s Fetched 61.6 kB in 0s (171 kB/s)
 81s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79925 files and directories currently installed.)
 81s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ...
 81s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
 81s Preparing to unpack .../python3-systemd_235-1build5_arm64.deb ...
 81s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
 81s Setting up pastebinit (1.7.1-1) ...
 81s Setting up python3-systemd (235-1build5) ...
 81s Processing triggers for man-db (2.12.1-3) ...
 82s Reading package lists...
 83s Building dependency tree...
 83s Reading state information...
 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 84s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 84s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 84s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 84s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 85s Reading package lists...
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 86s Calculating upgrade...
 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 86s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 90s autopkgtest [16:25:40]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 90s autopkgtest [16:25:40]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
 94s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B]
 94s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB]
 94s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB]
 94s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC
 94s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
 94s gpgv:                issuer "emollier@debian.org"
 94s gpgv: Can't check signature: No public key
 94s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found
 95s autopkgtest [16:25:45]: testing package pymol version 3.0.0+dfsg-1
 96s autopkgtest [16:25:46]: build not needed
 99s autopkgtest [16:25:49]: test command1: preparing testbed
103s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s Starting pkgProblemResolver with broken count: 0
103s Starting 2 pkgProblemResolver with broken count: 0
103s Done
104s The following additional packages will be installed:
104s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
104s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
104s   libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1
104s   libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
104s   libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
104s   libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6
104s   libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0
104s   libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64
104s   libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64
104s   libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64
104s   libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common
104s   libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
104s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
104s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
104s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
104s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
104s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
104s   python3-numpy python3-opengl python3-pymol python3-pyqt5
104s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
104s Suggested packages:
104s   cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins
104s   libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest
104s   libgle3 python3-tk
104s Recommended packages:
104s   libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme
104s   qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc
104s   | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers
104s   | vulkan-icd apbs libglut-dev
104s The following NEW packages will be installed:
104s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
104s   fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data
104s   libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1
104s   libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5
104s   libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0
104s   libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64
104s   libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8
104s   liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0
104s   libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5
104s   libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64
104s   libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1
104s   libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1
104s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
104s   libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
104s   libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
104s   libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3
104s   libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium
104s   pymol pymol-data python3-numpy python3-opengl python3-pymol python3-pyqt5
104s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
104s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded.
104s Need to get 44.7 MB/44.7 MB of archives.
104s After this operation, 187 MB of additional disk space will be used.
104s Get:1 /tmp/autopkgtest.rQWjf0/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
104s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
105s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
105s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
105s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
105s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
105s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
105s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-13ubuntu6 [29.6 kB]
105s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-13ubuntu6 [23.3 kB]
105s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-13ubuntu6 [27.2 kB]
105s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
105s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.10-1ubuntu2 [271 kB]
105s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB]
105s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB]
105s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-radeon1 arm64 2.4.123-1 [20.8 kB]
105s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.0-1 [35.7 kB]
105s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB]
105s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libglapi-mesa arm64 24.2.3-1ubuntu1 [59.4 kB]
105s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B]
105s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [7418 B]
105s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B]
105s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B]
105s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B]
105s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB]
105s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B]
105s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 24.2.3-1ubuntu1 [9030 kB]
106s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 24.2.3-1ubuntu1 [32.9 kB]
106s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.0-1 [26.7 kB]
106s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
106s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 24.2.3-1ubuntu1 [129 kB]
106s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
106s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.3.296.0-1 [153 kB]
106s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 24.2.3-1ubuntu1 [33.3 kB]
106s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB]
106s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB]
106s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB]
106s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B]
106s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 24.2.3-1ubuntu1 [164 kB]
106s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB]
106s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB]
106s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB]
106s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
106s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
106s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB]
106s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
106s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
106s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
106s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
106s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
106s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.13.0-1 [98.6 kB]
106s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.13.0-1 [25.2 kB]
106s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.26.2-1 [22.8 kB]
106s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [14.4 kB]
106s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.26.2-1 [132 kB]
106s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB]
106s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
106s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
106s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB]
106s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB]
106s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
106s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-1ubuntu1 [1997 kB]
106s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-1ubuntu1 [221 kB]
106s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB]
106s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-1ubuntu1 [735 kB]
106s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
106s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB]
106s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.0-1build3 [10.7 kB]
106s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB]
106s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.0-1build4 [7984 B]
107s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
107s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.9-1build4 [9648 B]
107s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B]
107s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B]
107s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB]
107s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB]
107s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1build1 [13.6 kB]
107s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
107s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-1ubuntu1 [3679 kB]
107s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-1ubuntu1 [2567 kB]
107s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-1ubuntu1 [124 kB]
107s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-2 [2840 kB]
107s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-1ubuntu1 [123 kB]
107s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-2 [165 kB]
107s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-1ubuntu1 [149 kB]
107s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-1ubuntu1 [208 kB]
107s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-1ubuntu1 [144 kB]
107s Get:87 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB]
107s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB]
107s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB]
107s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB]
107s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.15.0-1build1 [73.9 kB]
107s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-1build1 [2577 kB]
108s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-1build1 [118 kB]
108s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-1 [1394 kB]
108s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-1 [3896 kB]
108s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-1 [126 kB]
108s Fetched 44.7 MB in 4s (11.8 MB/s)
108s Selecting previously unselected package fonts-dejavu-mono.
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109s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
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113s Selecting previously unselected package pymol.
113s Preparing to unpack .../94-pymol_3.0.0+dfsg-1_all.deb ...
113s Unpacking pymol (3.0.0+dfsg-1) ...
113s Selecting previously unselected package autopkgtest-satdep.
113s Preparing to unpack .../95-1-autopkgtest-satdep.deb ...
113s Unpacking autopkgtest-satdep (0) ...
113s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
113s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ...
113s Setting up libwayland-server0:arm64 (1.23.0-1) ...
113s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ...
113s Setting up libdouble-conversion3:arm64 (3.3.0-1build1) ...
113s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ...
113s Setting up libxcb-xinput0:arm64 (1.17.0-2) ...
113s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
113s Setting up libxcb-render0:arm64 (1.17.0-2) ...
113s Setting up libdrm-radeon1:arm64 (2.4.123-1) ...
113s Setting up libglvnd0:arm64 (1.7.0-1build1) ...
113s Setting up libxcb-glx0:arm64 (1.17.0-2) ...
113s Setting up libxcb-keysyms1:arm64 (0.4.0-1build4) ...
113s Setting up libxcb-shape0:arm64 (1.17.0-2) ...
113s Setting up x11-common (1:7.7+23ubuntu3) ...
114s Setting up libxcb-render-util0:arm64 (0.3.9-1build4) ...
114s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
114s Setting up libxcb-icccm4:arm64 (0.4.2-1) ...
114s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
114s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
114s Setting up libaec0:arm64 (1.1.3-1) ...
114s Setting up libopengl0:arm64 (1.7.0-1build1) ...
114s Setting up libxcb-util1:arm64 (0.4.0-1build3) ...
114s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ...
114s Setting up libxcb-xkb1:arm64 (1.17.0-2) ...
114s Setting up libxcb-image0:arm64 (0.4.0-2build1) ...
114s Setting up libxcb-present0:arm64 (1.17.0-2) ...
114s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libblas3:arm64 (3.12.0-3build2) ...
114s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
114s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ...
114s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ...
114s Setting up libxcb-sync1:arm64 (1.17.0-2) ...
114s Setting up libavahi-common-data:arm64 (0.8-13ubuntu6) ...
114s Setting up pymol-data (3.0.0+dfsg-1) ...
114s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1build1) ...
114s Setting up fonts-dejavu-mono (2.37-8) ...
114s Setting up fonts-dejavu-core (2.37-8) ...
114s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ...
114s Setting up libglapi-mesa:arm64 (24.2.3-1ubuntu1) ...
114s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
114s Setting up libvulkan1:arm64 (1.3.296.0-1) ...
114s Setting up libxcb-dri2-0:arm64 (1.17.0-2) ...
114s Setting up python3-pyqt5.sip (12.15.0-1build1) ...
114s Setting up libmtdev1t64:arm64 (1.1.6-1.2) ...
114s Setting up libxshmfence1:arm64 (1.3-1build5) ...
114s Setting up libxcb-randr0:arm64 (1.17.0-2) ...
114s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libmd4c0:arm64 (0.5.2-2) ...
114s Setting up libharfbuzz0b:arm64 (10.0.1-1) ...
114s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ...
114s Setting up libsz2:arm64 (1.1.3-1) ...
114s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ...
114s Setting up libwacom-common (2.13.0-1) ...
114s Setting up libwayland-client0:arm64 (1.23.0-1) ...
114s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
114s Setting up libice6:arm64 (2:1.1.1-1) ...
114s Setting up mesa-libgallium:arm64 (24.2.3-1ubuntu1) ...
114s Setting up liblapack3:arm64 (3.12.0-3build2) ...
114s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
114s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libgbm1:arm64 (24.2.3-1ubuntu1) ...
114s Setting up libwacom9:arm64 (2.13.0-1) ...
114s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
114s Setting up libgl1-mesa-dri:arm64 (24.2.3-1ubuntu1) ...
114s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libavahi-common3:arm64 (0.8-13ubuntu6) ...
114s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
114s Setting up libinput-bin (1.26.2-1) ...
114s Setting up libegl-mesa0:arm64 (24.2.3-1ubuntu1) ...
114s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
116s Setting up libegl1:arm64 (1.7.0-1build1) ...
116s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
116s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
116s Setting up libsm6:arm64 (2:1.2.4-1) ...
116s Setting up libavahi-client3:arm64 (0.8-13ubuntu6) ...
116s Setting up libinput10:arm64 (1.26.2-1) ...
116s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
116s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
118s Regenerating fonts cache... done.
118s Setting up libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ...
118s Setting up libglx-mesa0:arm64 (24.2.3-1ubuntu1) ...
118s Setting up libglx0:arm64 (1.7.0-1build1) ...
118s Setting up libgl1:arm64 (1.7.0-1build1) ...
118s Setting up libglew2.2:arm64 (2.2.0-4build1) ...
118s Setting up libcups2t64:arm64 (2.4.10-1ubuntu2) ...
118s Setting up python3-opengl (3.1.7+dfsg-1) ...
119s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
119s   '''OpenGL extension AMD.vertex_shader_tessellator
120s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
120s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
120s Setting up libqt5help5:arm64 (5.15.15-2) ...
120s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
120s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
120s Setting up libqt5designer5:arm64 (5.15.15-2) ...
120s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ...
120s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
120s Setting up python3-pymol (3.0.0+dfsg-1) ...
121s Setting up pymol (3.0.0+dfsg-1) ...
121s Setting up autopkgtest-satdep (0) ...
121s Processing triggers for man-db (2.12.1-3) ...
122s Processing triggers for udev (256.5-2ubuntu4) ...
122s Processing triggers for libc-bin (2.40-1ubuntu3) ...
130s (Reading database ... 86166 files and directories currently installed.)
130s Removing autopkgtest-satdep (0) ...
131s autopkgtest [16:26:21]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
131s autopkgtest [16:26:21]: test command1: [-----------------------
131s Search pymol scripts in /tmp/autopkgtest.rQWjf0/build.aiS/src/examples...
131s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/examples
131s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/chempy/generate_amber.py'...
131s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/chempy/generate_mmff.py'...
131s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/area_diff.pml'...
132s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/build_peptide.py'...
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/contact.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/dali.py
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/density.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/groel_es.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/multiclip_ray.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/packing.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/packsurf.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ref_frame.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ribosome.pml
132s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/scenes2movie.pml
133s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/seq_match_sele.pml'...
134s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ss_xfer.pml
134s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/symsph.py'...
135s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/brick01.py'...
135s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo01.py'...
135s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo02.py'...
138s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo03.py'...
142s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo04.py'...
142s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo05.py'...
143s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo06.py'...
144s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo07.py'...
144s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo08.py'...
144s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_3Dtext01.py'...
144s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_axes.py'...
145s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_label_hack.py'...
148s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_plane.py'...
148s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model01.py'...
148s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model02.py'...
148s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model03.py'...
152s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/click_ordered_list.py'...
152s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/count_molecules.py'...
152s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/extend_demo01.py'...
152s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl01.py'...
153s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl02.py'...
153s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl03.py'...
157s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/importing.py
157s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/link_demo.py'...
157s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/membrane.py'...
157s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/mutate01.pml'...
158s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/mutate02.py'...
159s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/my_ext_gui.py'...
159s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/particle01.py'...
160s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/particle02.py'...
160s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/pick_wiz.py'...
160s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/povray01.py
160s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/scenes_to_movie01.pml'...
160s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/sd_annotate.pml
160s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/sele_wiz.py'...
161s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/start_pymol.py
161s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/syncmol.py'...
161s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/tkwindow.py
161s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui01.py'...
161s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui02.py'...
161s /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
161s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
161s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/xmlrpc01.py
161s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/xmlrpc02.py'...
161s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_demo.py'...
162s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_viewer1.py'...
162s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_viewer2.py'...
162s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/chempy
162s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/chempy/generate_amber.py'...
162s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/chempy/generate_mmff.py'...
162s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook
162s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/area_diff.pml'...
163s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/build_peptide.py'...
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/contact.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/dali.py
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/density.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/groel_es.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/multiclip_ray.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/packing.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/packsurf.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ref_frame.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ribosome.pml
163s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/scenes2movie.pml
164s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/seq_match_sele.pml'...
165s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/ss_xfer.pml
165s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/cookbook/symsph.py'...
165s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel
165s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/brick01.py'...
166s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo01.py'...
166s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo02.py'...
169s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo03.py'...
173s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo04.py'...
173s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo05.py'...
173s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo06.py'...
175s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo07.py'...
175s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo08.py'...
176s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_3Dtext01.py'...
176s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_axes.py'...
176s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_label_hack.py'...
179s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/cgo_plane.py'...
180s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model01.py'...
180s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model02.py'...
180s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/chempy_model03.py'...
183s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/click_ordered_list.py'...
184s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/count_molecules.py'...
184s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/extend_demo01.py'...
184s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl01.py'...
184s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl02.py'...
185s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/gl03.py'...
188s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/importing.py
188s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/link_demo.py'...
188s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/membrane.py'...
189s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/mutate01.pml'...
189s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/mutate02.py'...
191s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/my_ext_gui.py'...
191s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/particle01.py'...
191s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/particle02.py'...
192s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/pick_wiz.py'...
192s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/povray01.py
192s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/scenes_to_movie01.pml'...
192s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/sd_annotate.pml
192s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/sele_wiz.py'...
192s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/start_pymol.py
192s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/syncmol.py'...
193s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/tkwindow.py
193s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui01.py'...
193s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui02.py'...
193s /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
193s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
193s Skip /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/xmlrpc01.py
193s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/devel/xmlrpc02.py'...
193s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching
193s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_demo.py'...
193s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_viewer1.py'...
194s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/examples/launching/launch_viewer2.py'...
194s autopkgtest [16:27:24]: test command1: -----------------------]
195s autopkgtest [16:27:25]: test command1:  - - - - - - - - - - results - - - - - - - - - -
195s command1             PASS (superficial)
195s autopkgtest [16:27:25]: test command2: preparing testbed
197s Reading package lists...
197s Building dependency tree...
197s Reading state information...
197s Starting pkgProblemResolver with broken count: 0
197s Starting 2 pkgProblemResolver with broken count: 0
197s Done
198s The following NEW packages will be installed:
198s   autopkgtest-satdep
198s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
198s Need to get 0 B/700 B of archives.
198s After this operation, 0 B of additional disk space will be used.
198s Get:1 /tmp/autopkgtest.rQWjf0/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
198s Selecting previously unselected package autopkgtest-satdep.
198s (Reading database ... 
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198s Preparing to unpack .../2-autopkgtest-satdep.deb ...
198s Unpacking autopkgtest-satdep (0) ...
199s Setting up autopkgtest-satdep (0) ...
201s (Reading database ... 86166 files and directories currently installed.)
201s Removing autopkgtest-satdep (0) ...
202s autopkgtest [16:27:32]: test command2: sh debian/tests/call-pymol-scripts data/demo
202s autopkgtest [16:27:32]: test command2: [-----------------------
202s Search pymol scripts in /tmp/autopkgtest.rQWjf0/build.aiS/src/data/demo...
202s Processing new directory /tmp/autopkgtest.rQWjf0/build.aiS/src/data/demo
202s Run 'pymol -c /tmp/autopkgtest.rQWjf0/build.aiS/src/data/demo/cgo03.py'...
206s autopkgtest [16:27:36]: test command2: -----------------------]
207s command2             PASS (superficial)
207s autopkgtest [16:27:37]: test command2:  - - - - - - - - - - results - - - - - - - - - -
207s autopkgtest [16:27:37]: test command3: preparing testbed
210s Reading package lists...
211s Building dependency tree...
211s Reading state information...
211s Starting pkgProblemResolver with broken count: 0
211s Starting 2 pkgProblemResolver with broken count: 0
211s Done
212s The following NEW packages will be installed:
212s   autopkgtest-satdep
212s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
212s Need to get 0 B/700 B of archives.
212s After this operation, 0 B of additional disk space will be used.
212s Get:1 /tmp/autopkgtest.rQWjf0/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
212s Selecting previously unselected package autopkgtest-satdep.
212s (Reading database ... 
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213s Preparing to unpack .../3-autopkgtest-satdep.deb ...
213s Unpacking autopkgtest-satdep (0) ...
213s Setting up autopkgtest-satdep (0) ...
215s (Reading database ... 86166 files and directories currently installed.)
215s Removing autopkgtest-satdep (0) ...
216s autopkgtest [16:27:46]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
216s autopkgtest [16:27:46]: test command3: [-----------------------
216s Search pymol scripts in /usr/share/pymol/examples...
216s Processing new directory /usr/share/pymol/examples
216s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
217s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
217s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
217s Skip /usr/share/pymol/examples/cookbook/contact.pml
217s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
217s Skip /usr/share/pymol/examples/cookbook/packing.pml
217s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
217s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
217s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
217s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
217s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
217s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
226s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
226s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
226s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
226s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
227s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
230s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
230s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
230s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
230s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
234s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
234s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
234s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
234s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
239s Skip /usr/share/pymol/examples/devel/importing.py
239s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
239s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
239s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
240s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
241s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
241s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
242s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
242s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
242s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
243s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
243s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
243s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
243s Skip /usr/share/pymol/examples/devel/tkwindow.py
243s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
243s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
243s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
243s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
243s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
243s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
244s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
244s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
244s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
244s Processing new directory /usr/share/pymol/examples/chempy
244s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
244s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
245s Processing new directory /usr/share/pymol/examples/cookbook
245s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
245s Skip /usr/share/pymol/examples/cookbook/contact.pml
245s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
245s Skip /usr/share/pymol/examples/cookbook/packing.pml
245s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
245s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
245s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
245s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
245s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
245s Processing new directory /usr/share/pymol/examples/devel
245s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
248s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
253s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
254s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
254s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
254s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
254s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
261s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
262s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
262s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
262s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
262s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
263s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
266s Skip /usr/share/pymol/examples/devel/importing.py
266s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
267s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
267s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
268s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
269s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
269s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
270s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
270s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
270s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
271s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
271s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
271s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
271s Skip /usr/share/pymol/examples/devel/tkwindow.py
271s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
271s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
271s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
271s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
271s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
271s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
272s Processing new directory /usr/share/pymol/examples/launching
272s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
272s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
272s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
273s autopkgtest [16:28:43]: test command3: -----------------------]
273s command3             PASS (superficial)
273s autopkgtest [16:28:43]: test command3:  - - - - - - - - - - results - - - - - - - - - -
273s autopkgtest [16:28:43]: test command4: preparing testbed
278s Reading package lists...
278s Building dependency tree...
278s Reading state information...
278s Starting pkgProblemResolver with broken count: 0
278s Starting 2 pkgProblemResolver with broken count: 0
278s Done
279s The following NEW packages will be installed:
279s   autopkgtest-satdep
279s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
279s Need to get 0 B/700 B of archives.
279s After this operation, 0 B of additional disk space will be used.
279s Get:1 /tmp/autopkgtest.rQWjf0/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
280s Selecting previously unselected package autopkgtest-satdep.
280s (Reading database ... 
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(Reading database ... 86166 files and directories currently installed.)
280s Preparing to unpack .../4-autopkgtest-satdep.deb ...
280s Unpacking autopkgtest-satdep (0) ...
280s Setting up autopkgtest-satdep (0) ...
282s (Reading database ... 86166 files and directories currently installed.)
282s Removing autopkgtest-satdep (0) ...
283s autopkgtest [16:28:53]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
283s autopkgtest [16:28:53]: test command4: [-----------------------
283s Search pymol scripts in /usr/share/pymol/examples/cookbook...
283s Processing new directory /usr/share/pymol/examples/cookbook
283s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
284s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
285s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
285s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
287s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
315s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
318s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
318s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
320s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
321s autopkgtest [16:29:31]: test command4: -----------------------]
322s autopkgtest [16:29:32]: test command4:  - - - - - - - - - - results - - - - - - - - - -
322s command4             PASS (superficial)
322s autopkgtest [16:29:32]: test command5: preparing testbed
323s Reading package lists...
324s Building dependency tree...
324s Reading state information...
324s Starting pkgProblemResolver with broken count: 0
324s Starting 2 pkgProblemResolver with broken count: 0
324s Done
325s The following NEW packages will be installed:
325s   autopkgtest-satdep
325s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
325s Need to get 0 B/700 B of archives.
325s After this operation, 0 B of additional disk space will be used.
325s Get:1 /tmp/autopkgtest.rQWjf0/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
325s Selecting previously unselected package autopkgtest-satdep.
325s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 45%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 86166 files and directories currently installed.)
325s Preparing to unpack .../5-autopkgtest-satdep.deb ...
325s Unpacking autopkgtest-satdep (0) ...
325s Setting up autopkgtest-satdep (0) ...
328s (Reading database ... 86166 files and directories currently installed.)
328s Removing autopkgtest-satdep (0) ...
329s autopkgtest [16:29:39]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
329s autopkgtest [16:29:39]: test command5: [-----------------------
329s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
329s  Copyright (c) Schrodinger, LLC.
329s  All Rights Reserved.
329s  
329s     Created by Warren L. DeLano, Ph.D. 
329s  
329s     PyMOL is user-supported open-source software.  Although some versions
329s     are freely available, PyMOL is not in the public domain.
329s  
329s     If PyMOL is helpful in your work or study, then please volunteer 
329s     support for our ongoing efforts to create open and affordable scientific
329s     software by purchasing a PyMOL Maintenance and/or Support subscription.
329s 
329s     More information can be found at "http://www.pymol.org".
329s  
329s     Enter "help" for a list of commands.
329s     Enter "help <command-name>" for information on a specific command.
329s 
329s  Hit ESC anytime to toggle between text and graphics.
329s 
329s  Setting: wizard_prompt_mode set to 3.
329s  Detected 2 CPU cores.  Enabled multithreaded rendering.
329s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
329s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
329s PyMOL>wizard annotation
329s PyMOL>set wizard_prompt_mode,3
329s PyMOL>load_annotated_sdf demo.sdf
329s HBA ['[1, 25, 26, 34]\n']
329s HBD ['[20]\n']
329s ACD_NUMBER ['MFCD02681585\n']
329s SCORE ['-222.044\n']
329s MOLID ['MFCD02681585\n']
329s HBA ['[1, 21]\n']
329s HBD ['[]\n']
329s ACD_NUMBER ['MFCD01567969\n']
329s SCORE ['-219.984\n']
329s MOLID ['MFCD01567969\n']
329s HBA ['[1, 24]\n']
329s HBD ['[10, 22]\n']
329s ACD_NUMBER ['MFCD00023789\n']
329s SCORE ['-219.911\n']
329s MOLID ['MFCD00023789\n']
329s HBA ['[1, 11]\n']
329s HBD ['[3]\n']
329s ACD_NUMBER ['MFCD02579443\n']
329s SCORE ['-219.769\n']
329s MOLID ['MFCD02579443\n']
329s HBA ['[1, 11]\n']
329s HBD ['[9]\n']
329s ACD_NUMBER ['MFCD02579410\n']
329s SCORE ['-214.809\n']
329s MOLID ['MFCD02579410\n']
329s HBA ['[1, 20, 22, 27, 32]\n']
329s HBD ['[10, 20]\n']
329s ACD_NUMBER ['MFCD02579135\n']
329s SCORE ['-213.630\n']
329s MOLID ['MFCD02579135\n']
329s HBA ['[1, 11, 14, 21]\n']
329s HBD ['[]\n']
329s ACD_NUMBER ['MFCD02681468\n']
329s SCORE ['-213.462\n']
329s MOLID ['MFCD02681468\n']
329s HBA ['[1, 13, 14, 29]\n']
329s HBD ['[]\n']
329s ACD_NUMBER ['MFCD00141070\n']
329s SCORE ['-213.240\n']
329s MOLID ['MFCD00141070\n']
329s HBA ['[1, 8]\n']
329s HBD ['[]\n']
329s ACD_NUMBER ['MFCD02983625\n']
329s SCORE ['-211.422\n']
329s MOLID ['MFCD02983625\n']
329s HBA ['[1, 11]\n']
329s HBD ['[3, 12]\n']
329s ACD_NUMBER ['MFCD00115818\n']
329s SCORE ['-210.482\n']
329s MOLID ['MFCD00115818\n']
329s autopkgtest [16:29:39]: test command5: -----------------------]
330s command5             PASS (superficial)
330s autopkgtest [16:29:40]: test command5:  - - - - - - - - - - results - - - - - - - - - -
330s autopkgtest [16:29:40]: @@@@@@@@@@@@@@@@@@@@ summary
330s command1             PASS (superficial)
330s command2             PASS (superficial)
330s command3             PASS (superficial)
330s command4             PASS (superficial)
330s command5             PASS (superficial)
344s nova [W] Skipping flock in bos03-arm64
344s Creating nova instance adt-plucky-arm64-pymol-20241114-162409-juju-7f2275-prod-proposed-migration-environment-15-eb6a7be9-c576-430a-9d0f-4cb6c505a029 from image adt/ubuntu-plucky-arm64-server-20241114.img (UUID 4472f5f7-859f-4441-9e8e-9550fb35f210)...