0s autopkgtest [13:34:12]: starting date and time: 2024-11-13 13:34:12+0000 0s autopkgtest [13:34:12]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:34:12]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0idg2arp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libxml2 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libxml2/2.12.7+dfsg+really2.9.14-0.2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-32.secgroup --name adt-plucky-arm64-pymol-20241113-133412-juju-7f2275-prod-proposed-migration-environment-20-79a53111-f9f1-4e5f-ac2c-bf7eb7dd7f68 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [13:35:47]: testbed dpkg architecture: arm64 95s autopkgtest [13:35:47]: testbed apt version: 2.9.8 95s autopkgtest [13:35:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 96s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [124 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [682 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.9 kB] 97s Fetched 2042 kB in 1s (2469 kB/s) 97s Reading package lists... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 101s The following packages will be upgraded: 101s libxml2 101s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Need to get 737 kB of archives. 101s After this operation, 385 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2build1 [737 kB] 102s Fetched 737 kB in 1s (1236 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 102s Preparing to unpack .../libxml2_2.12.7+dfsg+really2.9.14-0.2build1_arm64.deb ... 102s Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2build1) over (2.12.7+dfsg-3) ... 102s Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 102s Processing triggers for libc-bin (2.40-1ubuntu3) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 106s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Calculating upgrade... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [13:36:04]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 112s autopkgtest [13:36:04]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 117s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B] 117s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB] 118s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC 118s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 118s gpgv: issuer "emollier@debian.org" 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found 119s autopkgtest [13:36:11]: testing package pymol version 3.0.0+dfsg-1 119s autopkgtest [13:36:11]: build not needed 122s autopkgtest [13:36:14]: test command1: preparing testbed 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s The following additional packages will be installed: 129s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 129s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 129s libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1 129s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 129s libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 129s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 129s libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 129s libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 129s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 129s libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 129s libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common 129s libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 129s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 129s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 129s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 129s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 129s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 129s python3-numpy python3-opengl python3-pymol python3-pyqt5 129s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 129s Suggested packages: 129s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 129s libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest 129s libgle3 python3-tk 129s Recommended packages: 129s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 129s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 129s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 129s | vulkan-icd apbs libglut-dev 129s The following NEW packages will be installed: 129s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 129s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 129s libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1 129s libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 129s libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 129s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 129s libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 129s liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 129s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 129s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 129s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 129s libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 129s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 129s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 129s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 129s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 129s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium 129s pymol pymol-data python3-numpy python3-opengl python3-pymol python3-pyqt5 129s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 130s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. 130s Need to get 44.2 MB/44.2 MB of archives. 130s After this operation, 179 MB of additional disk space will be used. 130s Get:1 /tmp/autopkgtest.3OUytb/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 130s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-13ubuntu6 [29.6 kB] 130s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-13ubuntu6 [23.3 kB] 130s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-13ubuntu6 [27.2 kB] 130s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 130s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.10-1ubuntu2 [271 kB] 130s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB] 130s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 130s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-radeon1 arm64 2.4.123-1 [20.8 kB] 130s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.0-1 [35.7 kB] 130s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 130s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libglapi-mesa arm64 24.2.3-1ubuntu1 [59.4 kB] 130s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 130s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [7418 B] 130s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 130s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 130s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 130s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 130s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 130s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 24.2.3-1ubuntu1 [9030 kB] 131s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 24.2.3-1ubuntu1 [32.9 kB] 131s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.0-1 [26.7 kB] 131s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 131s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 24.2.3-1ubuntu1 [129 kB] 131s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 131s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.3.296.0-1 [153 kB] 131s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 24.2.3-1ubuntu1 [33.3 kB] 131s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 131s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 131s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB] 131s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 131s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 24.2.3-1ubuntu1 [164 kB] 131s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 131s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 131s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 131s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 131s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 131s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 131s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 131s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 131s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 131s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 131s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 131s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.13.0-1 [98.6 kB] 131s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.13.0-1 [25.2 kB] 131s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.26.2-1 [22.8 kB] 131s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [14.4 kB] 131s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.26.2-1 [132 kB] 131s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 132s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 132s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 132s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 132s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 132s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 132s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-1ubuntu1 [1997 kB] 132s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-1ubuntu1 [221 kB] 132s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 132s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-1ubuntu1 [735 kB] 132s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 132s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 132s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.0-1build3 [10.7 kB] 132s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 132s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.0-1build4 [7984 B] 132s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 132s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.9-1build4 [9648 B] 132s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 132s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 132s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 132s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 132s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1build1 [13.6 kB] 132s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 132s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-1ubuntu1 [3679 kB] 132s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-1ubuntu1 [2567 kB] 132s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-1ubuntu1 [124 kB] 132s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-2 [2840 kB] 132s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-1ubuntu1 [123 kB] 132s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-2 [165 kB] 132s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-1ubuntu1 [149 kB] 132s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-1ubuntu1 [208 kB] 132s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-1ubuntu1 [144 kB] 132s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 132s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 132s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB] 132s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 133s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.15.0-1 [63.5 kB] 133s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-1build1 [2577 kB] 133s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-1build1 [118 kB] 133s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-1 [1394 kB] 133s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-1 [3896 kB] 133s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-1 [126 kB] 133s Fetched 44.2 MB in 3s (13.3 MB/s) 133s Selecting previously unselected package fonts-dejavu-mono. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 133s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-mono (2.37-8) ... 133s Selecting previously unselected package fonts-dejavu-core. 133s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-core (2.37-8) ... 133s Selecting previously unselected package fontconfig-config. 133s Preparing to unpack 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.../12-libdrm-amdgpu1_2.4.123-1_arm64.deb ... 134s Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ... 134s Selecting previously unselected package libdrm-radeon1:arm64. 134s Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_arm64.deb ... 134s Unpacking libdrm-radeon1:arm64 (2.4.123-1) ... 134s Selecting previously unselected package libwayland-server0:arm64. 134s Preparing to unpack .../14-libwayland-server0_1.23.0-1_arm64.deb ... 134s Unpacking libwayland-server0:arm64 (1.23.0-1) ... 134s Selecting previously unselected package libxcb-randr0:arm64. 134s Preparing to unpack .../15-libxcb-randr0_1.17.0-2_arm64.deb ... 134s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 134s Selecting previously unselected package libglapi-mesa:arm64. 134s Preparing to unpack .../16-libglapi-mesa_24.2.3-1ubuntu1_arm64.deb ... 134s Unpacking libglapi-mesa:arm64 (24.2.3-1ubuntu1) ... 134s Selecting previously unselected package libx11-xcb1:arm64. 134s Preparing to unpack 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libxcb-xfixes0:arm64 (1.17.0-2) ... 134s Selecting previously unselected package libxshmfence1:arm64. 134s Preparing to unpack .../23-libxshmfence1_1.3-1build5_arm64.deb ... 134s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 134s Selecting previously unselected package mesa-libgallium:arm64. 134s Preparing to unpack .../24-mesa-libgallium_24.2.3-1ubuntu1_arm64.deb ... 134s Unpacking mesa-libgallium:arm64 (24.2.3-1ubuntu1) ... 135s Selecting previously unselected package libgbm1:arm64. 135s Preparing to unpack .../25-libgbm1_24.2.3-1ubuntu1_arm64.deb ... 135s Unpacking libgbm1:arm64 (24.2.3-1ubuntu1) ... 135s Selecting previously unselected package libwayland-client0:arm64. 135s Preparing to unpack .../26-libwayland-client0_1.23.0-1_arm64.deb ... 135s Unpacking libwayland-client0:arm64 (1.23.0-1) ... 135s Selecting previously unselected package libxcb-shm0:arm64. 135s Preparing to unpack .../27-libxcb-shm0_1.17.0-2_arm64.deb ... 135s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 135s Selecting previously unselected package libegl-mesa0:arm64. 135s Preparing to unpack .../28-libegl-mesa0_24.2.3-1ubuntu1_arm64.deb ... 135s Unpacking libegl-mesa0:arm64 (24.2.3-1ubuntu1) ... 135s Selecting previously unselected package libgfortran5:arm64. 135s Preparing to unpack .../29-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 135s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 135s Selecting previously unselected package libvulkan1:arm64. 135s Preparing to unpack .../30-libvulkan1_1.3.296.0-1_arm64.deb ... 135s Unpacking libvulkan1:arm64 (1.3.296.0-1) ... 135s Selecting previously unselected package libgl1-mesa-dri:arm64. 135s Preparing to unpack .../31-libgl1-mesa-dri_24.2.3-1ubuntu1_arm64.deb ... 135s Unpacking libgl1-mesa-dri:arm64 (24.2.3-1ubuntu1) ... 135s Selecting previously unselected package libglvnd0:arm64. 135s Preparing to unpack .../32-libglvnd0_1.7.0-1build1_arm64.deb ... 135s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 135s Selecting previously unselected package libxcb-glx0:arm64. 135s Preparing to unpack .../33-libxcb-glx0_1.17.0-2_arm64.deb ... 135s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 135s Selecting previously unselected package libxfixes3:arm64. 135s Preparing to unpack .../34-libxfixes3_1%3a6.0.0-2build1_arm64.deb ... 135s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ... 135s Selecting previously unselected package libxxf86vm1:arm64. 135s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 135s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 135s Selecting previously unselected package libglx-mesa0:arm64. 135s Preparing to unpack .../36-libglx-mesa0_24.2.3-1ubuntu1_arm64.deb ... 135s Unpacking libglx-mesa0:arm64 (24.2.3-1ubuntu1) ... 135s Selecting previously unselected package libglx0:arm64. 135s Preparing to unpack .../37-libglx0_1.7.0-1build1_arm64.deb ... 135s Unpacking libglx0:arm64 (1.7.0-1build1) ... 135s Selecting previously unselected package libgl1:arm64. 135s Preparing to unpack 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Selecting previously unselected package libwacom9:arm64. 136s Preparing to unpack .../49-libwacom9_2.13.0-1_arm64.deb ... 136s Unpacking libwacom9:arm64 (2.13.0-1) ... 136s Selecting previously unselected package libinput-bin. 136s Preparing to unpack .../50-libinput-bin_1.26.2-1_arm64.deb ... 136s Unpacking libinput-bin (1.26.2-1) ... 136s Selecting previously unselected package libmtdev1t64:arm64. 136s Preparing to unpack .../51-libmtdev1t64_1.1.6-1.2_arm64.deb ... 136s Unpacking libmtdev1t64:arm64 (1.1.6-1.2) ... 136s Selecting previously unselected package libinput10:arm64. 136s Preparing to unpack .../52-libinput10_1.26.2-1_arm64.deb ... 136s Unpacking libinput10:arm64 (1.26.2-1) ... 136s Selecting previously unselected package libjpeg-turbo8:arm64. 136s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 136s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 136s Selecting previously unselected package libjpeg8:arm64. 136s Preparing to unpack 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136s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 136s Selecting previously unselected package libqt5dbus5t64:arm64. 136s Preparing to unpack .../60-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 136s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 136s Selecting previously unselected package libegl1:arm64. 136s Preparing to unpack .../61-libegl1_1.7.0-1build1_arm64.deb ... 136s Unpacking libegl1:arm64 (1.7.0-1build1) ... 136s Selecting previously unselected package libqt5network5t64:arm64. 136s Preparing to unpack .../62-libqt5network5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 136s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 136s Selecting previously unselected package libsm6:arm64. 136s Preparing to unpack .../63-libsm6_2%3a1.2.4-1_arm64.deb ... 136s Unpacking libsm6:arm64 (2:1.2.4-1) ... 136s Selecting previously unselected package libxcb-icccm4:arm64. 136s Preparing to unpack .../64-libxcb-icccm4_0.4.2-1_arm64.deb ... 136s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 136s Selecting previously unselected package libxcb-util1:arm64. 136s Preparing to unpack .../65-libxcb-util1_0.4.0-1build3_arm64.deb ... 136s Unpacking libxcb-util1:arm64 (0.4.0-1build3) ... 136s Selecting previously unselected package libxcb-image0:arm64. 136s Preparing to unpack .../66-libxcb-image0_0.4.0-2build1_arm64.deb ... 136s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 136s Selecting previously unselected package libxcb-keysyms1:arm64. 136s Preparing to unpack .../67-libxcb-keysyms1_0.4.0-1build4_arm64.deb ... 136s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build4) ... 136s Selecting previously unselected package libxcb-render0:arm64. 136s Preparing to unpack .../68-libxcb-render0_1.17.0-2_arm64.deb ... 136s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 137s Selecting previously unselected package libxcb-render-util0:arm64. 137s Preparing to unpack .../69-libxcb-render-util0_0.3.9-1build4_arm64.deb ... 137s Unpacking 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Unpacking libqt5designer5:arm64 (5.15.15-2) ... 137s Selecting previously unselected package libqt5sql5t64:arm64. 137s Preparing to unpack .../80-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 137s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 137s Selecting previously unselected package libqt5help5:arm64. 137s Preparing to unpack .../81-libqt5help5_5.15.15-2_arm64.deb ... 137s Unpacking libqt5help5:arm64 (5.15.15-2) ... 137s Selecting previously unselected package libqt5opengl5t64:arm64. 137s Preparing to unpack .../82-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 137s Unpacking libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 137s Selecting previously unselected package libqt5printsupport5t64:arm64. 137s Preparing to unpack .../83-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ... 137s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 137s Selecting previously unselected package libqt5test5t64:arm64. 137s Preparing to unpack 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pymol (3.0.0+dfsg-1) ... 138s Selecting previously unselected package autopkgtest-satdep. 138s Preparing to unpack .../95-1-autopkgtest-satdep.deb ... 138s Unpacking autopkgtest-satdep (0) ... 138s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 138s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 138s Setting up libwayland-server0:arm64 (1.23.0-1) ... 138s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 138s Setting up libdouble-conversion3:arm64 (3.3.0-1build1) ... 138s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 138s Setting up libxcb-xinput0:arm64 (1.17.0-2) ... 138s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 138s Setting up libxcb-render0:arm64 (1.17.0-2) ... 138s Setting up libdrm-radeon1:arm64 (2.4.123-1) ... 138s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 138s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 138s Setting up libxcb-keysyms1:arm64 (0.4.0-1build4) ... 138s Setting up libxcb-shape0:arm64 (1.17.0-2) ... 138s Setting up x11-common (1:7.7+23ubuntu3) ... 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143s Setting up libgl1:arm64 (1.7.0-1build1) ... 143s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 143s Setting up libcups2t64:arm64 (2.4.10-1ubuntu2) ... 143s Setting up python3-opengl (3.1.7+dfsg-1) ... 143s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 143s '''OpenGL extension AMD.vertex_shader_tessellator 145s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 145s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 145s Setting up libqt5help5:arm64 (5.15.15-2) ... 145s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 145s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ... 145s Setting up libqt5designer5:arm64 (5.15.15-2) ... 145s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 145s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 145s Setting up python3-pymol (3.0.0+dfsg-1) ... 146s Setting up pymol (3.0.0+dfsg-1) ... 146s Setting up autopkgtest-satdep (0) ... 146s Processing triggers for man-db (2.12.1-3) ... 146s Processing triggers for udev (256.5-2ubuntu4) ... 147s Processing triggers for libc-bin (2.40-1ubuntu3) ... 153s (Reading database ... 86139 files and directories currently installed.) 153s Removing autopkgtest-satdep (0) ... 153s autopkgtest [13:36:45]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 153s autopkgtest [13:36:45]: test command1: [----------------------- 153s Search pymol scripts in /tmp/autopkgtest.3OUytb/build.k6o/src/examples... 153s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/examples 153s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/chempy/generate_amber.py'... 154s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/chempy/generate_mmff.py'... 154s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/area_diff.pml'... 155s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/build_peptide.py'... 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/contact.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/dali.py 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/density.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/groel_es.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/multiclip_ray.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/packing.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/packsurf.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ref_frame.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ribosome.pml 155s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/scenes2movie.pml 155s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/seq_match_sele.pml'... 157s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ss_xfer.pml 157s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/symsph.py'... 157s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/brick01.py'... 158s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo01.py'... 158s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo02.py'... 163s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo03.py'... 165s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo04.py'... 166s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo05.py'... 166s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo06.py'... 168s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo07.py'... 168s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo08.py'... 168s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_3Dtext01.py'... 169s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_axes.py'... 169s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_label_hack.py'... 172s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_plane.py'... 172s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model01.py'... 172s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model02.py'... 173s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model03.py'... 176s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/click_ordered_list.py'... 176s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/count_molecules.py'... 176s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/extend_demo01.py'... 177s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl01.py'... 177s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl02.py'... 177s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl03.py'... 181s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/importing.py 181s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/link_demo.py'... 181s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/membrane.py'... 182s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/mutate01.pml'... 182s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/mutate02.py'... 183s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/my_ext_gui.py'... 183s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/particle01.py'... 184s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/particle02.py'... 184s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/pick_wiz.py'... 184s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/povray01.py 184s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/scenes_to_movie01.pml'... 185s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/sd_annotate.pml 185s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/sele_wiz.py'... 185s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/start_pymol.py 185s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/syncmol.py'... 185s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/tkwindow.py 185s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui01.py'... 185s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui02.py'... 185s /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 185s mo = re.search("molid\=([A-Z0-9]+)",self.path) 185s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/xmlrpc01.py 185s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/xmlrpc02.py'... 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_demo.py'... 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_viewer1.py'... 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_viewer2.py'... 186s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/examples/chempy 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/chempy/generate_amber.py'... 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/chempy/generate_mmff.py'... 186s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook 186s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/area_diff.pml'... 187s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/build_peptide.py'... 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/contact.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/dali.py 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/density.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/groel_es.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/multiclip_ray.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/packing.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/packsurf.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ref_frame.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ribosome.pml 187s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/scenes2movie.pml 188s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/seq_match_sele.pml'... 190s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/ss_xfer.pml 190s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/cookbook/symsph.py'... 190s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel 190s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/brick01.py'... 190s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo01.py'... 191s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo02.py'... 194s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo03.py'... 197s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo04.py'... 197s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo05.py'... 197s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo06.py'... 199s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo07.py'... 199s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo08.py'... 200s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_3Dtext01.py'... 200s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_axes.py'... 200s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_label_hack.py'... 203s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/cgo_plane.py'... 203s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model01.py'... 204s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model02.py'... 204s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/chempy_model03.py'... 207s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/click_ordered_list.py'... 207s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/count_molecules.py'... 208s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/extend_demo01.py'... 208s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl01.py'... 208s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl02.py'... 209s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/gl03.py'... 212s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/importing.py 212s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/link_demo.py'... 212s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/membrane.py'... 213s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/mutate01.pml'... 213s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/mutate02.py'... 214s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/my_ext_gui.py'... 215s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/particle01.py'... 215s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/particle02.py'... 215s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/pick_wiz.py'... 216s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/povray01.py 216s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/scenes_to_movie01.pml'... 216s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/sd_annotate.pml 216s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/sele_wiz.py'... 216s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/start_pymol.py 216s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/syncmol.py'... 216s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/tkwindow.py 216s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui01.py'... 216s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui02.py'... 217s /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 217s mo = re.search("molid\=([A-Z0-9]+)",self.path) 217s Skip /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/xmlrpc01.py 217s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/devel/xmlrpc02.py'... 217s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching 217s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_demo.py'... 217s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_viewer1.py'... 217s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/examples/launching/launch_viewer2.py'... 218s autopkgtest [13:37:50]: test command1: -----------------------] 218s command1 PASS (superficial) 218s autopkgtest [13:37:50]: test command1: - - - - - - - - - - results - - - - - - - - - - 219s autopkgtest [13:37:51]: test command2: preparing testbed 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 226s The following NEW packages will be installed: 226s autopkgtest-satdep 226s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 0 B/704 B of archives. 226s After this operation, 0 B of additional disk space will be used. 226s Get:1 /tmp/autopkgtest.3OUytb/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 226s Selecting previously unselected package autopkgtest-satdep. 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86139 files and directories currently installed.) 226s Preparing to unpack .../2-autopkgtest-satdep.deb ... 226s Unpacking autopkgtest-satdep (0) ... 227s Setting up autopkgtest-satdep (0) ... 229s (Reading database ... 86139 files and directories currently installed.) 229s Removing autopkgtest-satdep (0) ... 230s autopkgtest [13:38:02]: test command2: sh debian/tests/call-pymol-scripts data/demo 230s autopkgtest [13:38:02]: test command2: [----------------------- 230s Search pymol scripts in /tmp/autopkgtest.3OUytb/build.k6o/src/data/demo... 230s Processing new directory /tmp/autopkgtest.3OUytb/build.k6o/src/data/demo 230s Run 'pymol -c /tmp/autopkgtest.3OUytb/build.k6o/src/data/demo/cgo03.py'... 234s autopkgtest [13:38:06]: test command2: -----------------------] 234s command2 PASS (superficial) 234s autopkgtest [13:38:06]: test command2: - - - - - - - - - - results - - - - - - - - - - 235s autopkgtest [13:38:07]: test command3: preparing testbed 237s Reading package lists... 238s Building dependency tree... 238s Reading state information... 238s Starting pkgProblemResolver with broken count: 0 238s Starting 2 pkgProblemResolver with broken count: 0 238s Done 239s The following NEW packages will be installed: 239s autopkgtest-satdep 239s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 239s Need to get 0 B/700 B of archives. 239s After this operation, 0 B of additional disk space will be used. 239s Get:1 /tmp/autopkgtest.3OUytb/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 239s Selecting previously unselected package autopkgtest-satdep. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86139 files and directories currently installed.) 239s Preparing to unpack .../3-autopkgtest-satdep.deb ... 239s Unpacking autopkgtest-satdep (0) ... 239s Setting up autopkgtest-satdep (0) ... 242s (Reading database ... 86139 files and directories currently installed.) 242s Removing autopkgtest-satdep (0) ... 243s autopkgtest [13:38:15]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 243s autopkgtest [13:38:15]: test command3: [----------------------- 243s Search pymol scripts in /usr/share/pymol/examples... 243s Processing new directory /usr/share/pymol/examples 243s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 243s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 243s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 243s Skip /usr/share/pymol/examples/cookbook/contact.pml 243s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 243s Skip /usr/share/pymol/examples/cookbook/packing.pml 243s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 243s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 243s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 243s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 243s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 243s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 244s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 256s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 257s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 257s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 257s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 262s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 265s Skip /usr/share/pymol/examples/devel/importing.py 265s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 265s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 266s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 266s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 269s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 269s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 270s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 270s Skip /usr/share/pymol/examples/devel/tkwindow.py 270s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 271s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 271s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 271s mo = re.search("molid\=([A-Z0-9]+)",self.path) 271s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 271s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 271s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 271s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 271s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 272s Processing new directory /usr/share/pymol/examples/chempy 272s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 272s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 272s Processing new directory /usr/share/pymol/examples/cookbook 272s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 272s Skip /usr/share/pymol/examples/cookbook/contact.pml 272s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 272s Skip /usr/share/pymol/examples/cookbook/packing.pml 272s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 272s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 272s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 272s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 272s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 272s Processing new directory /usr/share/pymol/examples/devel 272s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 272s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 276s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 279s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 279s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 281s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 286s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 286s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 286s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 289s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 290s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 290s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 290s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 291s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 291s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 295s Skip /usr/share/pymol/examples/devel/importing.py 295s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 295s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 295s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 296s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 297s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 297s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 298s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 298s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 298s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 298s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 298s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 299s Skip /usr/share/pymol/examples/devel/tkwindow.py 299s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 299s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 299s mo = re.search("molid\=([A-Z0-9]+)",self.path) 299s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 299s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 299s Processing new directory /usr/share/pymol/examples/launching 299s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 300s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 300s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 300s autopkgtest [13:39:12]: test command3: -----------------------] 301s autopkgtest [13:39:13]: test command3: - - - - - - - - - - results - - - - - - - - - - 301s command3 PASS (superficial) 301s autopkgtest [13:39:13]: test command4: preparing testbed 302s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s Starting pkgProblemResolver with broken count: 0 303s Starting 2 pkgProblemResolver with broken count: 0 303s Done 304s The following NEW packages will be installed: 304s autopkgtest-satdep 304s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 304s Need to get 0 B/700 B of archives. 304s After this operation, 0 B of additional disk space will be used. 304s Get:1 /tmp/autopkgtest.3OUytb/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 304s Selecting previously unselected package autopkgtest-satdep. 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86139 files and directories currently installed.) 304s Preparing to unpack .../4-autopkgtest-satdep.deb ... 304s Unpacking autopkgtest-satdep (0) ... 304s Setting up autopkgtest-satdep (0) ... 307s (Reading database ... 86139 files and directories currently installed.) 307s Removing autopkgtest-satdep (0) ... 308s autopkgtest [13:39:20]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 308s autopkgtest [13:39:20]: test command4: [----------------------- 308s Search pymol scripts in /usr/share/pymol/examples/cookbook... 308s Processing new directory /usr/share/pymol/examples/cookbook 308s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 309s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 310s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 310s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 312s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 339s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 343s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 343s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 345s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 347s autopkgtest [13:39:59]: test command4: -----------------------] 348s autopkgtest [13:40:00]: test command4: - - - - - - - - - - results - - - - - - - - - - 348s command4 PASS (superficial) 348s autopkgtest [13:40:00]: test command5: preparing testbed 351s Reading package lists... 351s Building dependency tree... 351s Reading state information... 352s Starting pkgProblemResolver with broken count: 0 352s Starting 2 pkgProblemResolver with broken count: 0 352s Done 352s The following NEW packages will be installed: 352s autopkgtest-satdep 352s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 352s Need to get 0 B/700 B of archives. 352s After this operation, 0 B of additional disk space will be used. 352s Get:1 /tmp/autopkgtest.3OUytb/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 353s Selecting previously unselected package autopkgtest-satdep. 353s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86139 files and directories currently installed.) 353s Preparing to unpack .../5-autopkgtest-satdep.deb ... 353s Unpacking autopkgtest-satdep (0) ... 353s Setting up autopkgtest-satdep (0) ... 356s (Reading database ... 86139 files and directories currently installed.) 356s Removing autopkgtest-satdep (0) ... 356s autopkgtest [13:40:08]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 356s autopkgtest [13:40:08]: test command5: [----------------------- 357s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 357s Copyright (c) Schrodinger, LLC. 357s All Rights Reserved. 357s 357s Created by Warren L. DeLano, Ph.D. 357s 357s PyMOL is user-supported open-source software. Although some versions 357s are freely available, PyMOL is not in the public domain. 357s 357s If PyMOL is helpful in your work or study, then please volunteer 357s support for our ongoing efforts to create open and affordable scientific 357s software by purchasing a PyMOL Maintenance and/or Support subscription. 357s 357s More information can be found at "http://www.pymol.org". 357s 357s Enter "help" for a list of commands. 357s Enter "help " for information on a specific command. 357s 357s Hit ESC anytime to toggle between text and graphics. 357s 357s Setting: wizard_prompt_mode set to 3. 357s Detected 2 CPU cores. Enabled multithreaded rendering. 357s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 357s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 357s PyMOL>wizard annotation 357s PyMOL>set wizard_prompt_mode,3 357s PyMOL>load_annotated_sdf demo.sdf 357s HBA ['[1, 25, 26, 34]\n'] 357s HBD ['[20]\n'] 357s ACD_NUMBER ['MFCD02681585\n'] 357s SCORE ['-222.044\n'] 357s MOLID ['MFCD02681585\n'] 357s HBA ['[1, 21]\n'] 357s HBD ['[]\n'] 357s ACD_NUMBER ['MFCD01567969\n'] 357s SCORE ['-219.984\n'] 357s MOLID ['MFCD01567969\n'] 357s HBA ['[1, 24]\n'] 357s HBD ['[10, 22]\n'] 357s ACD_NUMBER ['MFCD00023789\n'] 357s SCORE ['-219.911\n'] 357s MOLID ['MFCD00023789\n'] 357s HBA ['[1, 11]\n'] 357s HBD ['[3]\n'] 357s ACD_NUMBER ['MFCD02579443\n'] 357s SCORE ['-219.769\n'] 357s MOLID ['MFCD02579443\n'] 357s HBA ['[1, 11]\n'] 357s HBD ['[9]\n'] 357s ACD_NUMBER ['MFCD02579410\n'] 357s SCORE ['-214.809\n'] 357s MOLID ['MFCD02579410\n'] 357s HBA ['[1, 20, 22, 27, 32]\n'] 357s HBD ['[10, 20]\n'] 357s ACD_NUMBER ['MFCD02579135\n'] 357s SCORE ['-213.630\n'] 357s MOLID ['MFCD02579135\n'] 357s HBA ['[1, 11, 14, 21]\n'] 357s HBD ['[]\n'] 357s ACD_NUMBER ['MFCD02681468\n'] 357s SCORE ['-213.462\n'] 357s MOLID ['MFCD02681468\n'] 357s HBA ['[1, 13, 14, 29]\n'] 357s HBD ['[]\n'] 357s ACD_NUMBER ['MFCD00141070\n'] 357s SCORE ['-213.240\n'] 357s MOLID ['MFCD00141070\n'] 357s HBA ['[1, 8]\n'] 357s HBD ['[]\n'] 357s ACD_NUMBER ['MFCD02983625\n'] 357s SCORE ['-211.422\n'] 357s MOLID ['MFCD02983625\n'] 357s HBA ['[1, 11]\n'] 357s HBD ['[3, 12]\n'] 357s ACD_NUMBER ['MFCD00115818\n'] 357s SCORE ['-210.482\n'] 357s MOLID ['MFCD00115818\n'] 357s autopkgtest [13:40:09]: test command5: -----------------------] 357s autopkgtest [13:40:09]: test command5: - - - - - - - - - - results - - - - - - - - - - 357s command5 PASS (superficial) 358s autopkgtest [13:40:10]: @@@@@@@@@@@@@@@@@@@@ summary 358s command1 PASS (superficial) 358s command2 PASS (superficial) 358s command3 PASS (superficial) 358s command4 PASS (superficial) 358s command5 PASS (superficial) 372s nova [W] Skipping flock in bos03-arm64 372s Creating nova instance adt-plucky-arm64-pymol-20241113-133412-juju-7f2275-prod-proposed-migration-environment-20-79a53111-f9f1-4e5f-ac2c-bf7eb7dd7f68 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...