0s autopkgtest [10:01:27]: starting date and time: 2024-11-13 10:01:27+0000
  0s autopkgtest [10:01:27]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [10:01:27]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8oocg7a5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-6.secgroup --name adt-plucky-arm64-pymol-20241113-100126-juju-7f2275-prod-proposed-migration-environment-20-9ee7119a-e184-47b5-a677-38493e46af71 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
114s autopkgtest [10:03:21]: testbed dpkg architecture: arm64
114s autopkgtest [10:03:21]: testbed apt version: 2.9.8
114s autopkgtest [10:03:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
115s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
115s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
115s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
115s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
115s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
116s Fetched 1794 kB in 1s (1691 kB/s)
116s Reading package lists...
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Calculating upgrade...
120s The following NEW packages will be installed:
120s   python3.13-gdbm
120s The following packages will be upgraded:
120s   libpython3-stdlib python3 python3-gdbm python3-minimal
120s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
120s Need to get 101 kB of archives.
120s After this operation, 141 kB of additional disk space will be used.
120s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
120s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
120s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
120s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
120s Fetched 101 kB in 0s (270 kB/s)
121s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
121s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
121s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Setting up python3-minimal (3.12.7-1) ...
121s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
121s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
121s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
121s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
121s Selecting previously unselected package python3.13-gdbm.
121s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
121s Unpacking python3.13-gdbm (3.13.0-2) ...
121s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
121s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
121s Setting up python3.13-gdbm (3.13.0-2) ...
121s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
121s Setting up python3 (3.12.7-1) ...
122s Setting up python3-gdbm:arm64 (3.12.7-1) ...
122s Processing triggers for man-db (2.12.1-3) ...
122s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
124s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
124s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
124s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
125s Reading package lists...
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
126s Calculating upgrade...
126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
126s Reading package lists...
127s Building dependency tree...
127s Reading state information...
127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s autopkgtest [10:03:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
131s autopkgtest [10:03:38]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
135s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B]
135s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB]
135s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB]
135s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC
135s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
135s gpgv:                issuer "emollier@debian.org"
135s gpgv: Can't check signature: No public key
135s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found
137s autopkgtest [10:03:44]: testing package pymol version 3.0.0+dfsg-1
137s autopkgtest [10:03:44]: build not needed
140s autopkgtest [10:03:47]: test command1: preparing testbed
141s Reading package lists...
142s Building dependency tree...
142s Reading state information...
142s Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
143s The following additional packages will be installed:
143s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
143s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
143s   libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1
143s   libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
143s   libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
143s   libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6
143s   libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0
143s   libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64
143s   libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64
143s   libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64
143s   libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common
143s   libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
143s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
143s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
143s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
143s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
143s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
143s   python3-numpy python3-opengl python3-pymol python3-pyqt5
143s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
143s Suggested packages:
143s   cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins
143s   libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest
143s   libgle3 python3-tk
143s Recommended packages:
143s   libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme
143s   qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc
143s   | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers
143s   | vulkan-icd apbs libglut-dev
143s The following NEW packages will be installed:
143s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
143s   fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data
143s   libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1
143s   libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5
143s   libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0
143s   libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64
143s   libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8
143s   liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0
143s   libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5
143s   libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64
143s   libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1
143s   libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1
143s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
143s   libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
143s   libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
143s   libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3
143s   libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium
143s   pymol pymol-data python3-numpy python3-opengl python3-pymol python3-pyqt5
143s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
143s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 44.2 MB/44.2 MB of archives.
143s After this operation, 179 MB of additional disk space will be used.
143s Get:1 /tmp/autopkgtest.J337Vq/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
143s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
144s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
144s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
144s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
144s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
144s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
144s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-13ubuntu6 [29.6 kB]
144s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-13ubuntu6 [23.3 kB]
144s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-13ubuntu6 [27.2 kB]
144s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
144s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.10-1ubuntu2 [271 kB]
144s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.0-1build1 [38.0 kB]
144s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB]
144s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-radeon1 arm64 2.4.123-1 [20.8 kB]
144s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.0-1 [35.7 kB]
144s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB]
144s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libglapi-mesa arm64 24.2.3-1ubuntu1 [59.4 kB]
144s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B]
144s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [7418 B]
144s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B]
144s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B]
144s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B]
144s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB]
144s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B]
144s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 24.2.3-1ubuntu1 [9030 kB]
145s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 24.2.3-1ubuntu1 [32.9 kB]
145s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.0-1 [26.7 kB]
145s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
145s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl-mesa0 arm64 24.2.3-1ubuntu1 [129 kB]
145s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
145s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.3.296.0-1 [153 kB]
145s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 24.2.3-1ubuntu1 [33.3 kB]
145s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB]
145s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB]
145s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB]
145s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B]
145s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 24.2.3-1ubuntu1 [164 kB]
145s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB]
145s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB]
145s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB]
145s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
145s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
145s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB]
145s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
145s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
145s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
145s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
145s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
145s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom-common all 2.13.0-1 [98.6 kB]
145s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libwacom9 arm64 2.13.0-1 [25.2 kB]
145s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput-bin arm64 1.26.2-1 [22.8 kB]
145s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [14.4 kB]
145s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libinput10 arm64 1.26.2-1 [132 kB]
145s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB]
145s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
145s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
145s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB]
145s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB]
145s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
145s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-1ubuntu1 [1997 kB]
145s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-1ubuntu1 [221 kB]
145s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB]
145s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-1ubuntu1 [735 kB]
145s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
145s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB]
145s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-util1 arm64 0.4.0-1build3 [10.7 kB]
145s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB]
145s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-keysyms1 arm64 0.4.0-1build4 [7984 B]
145s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
145s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render-util0 arm64 0.3.9-1build4 [9648 B]
145s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B]
145s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B]
145s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB]
145s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB]
145s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1build1 [13.6 kB]
145s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
145s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-1ubuntu1 [3679 kB]
145s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-1ubuntu1 [2567 kB]
146s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5xml5t64 arm64 5.15.15+dfsg-1ubuntu1 [124 kB]
146s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5designer5 arm64 5.15.15-2 [2840 kB]
146s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5sql5t64 arm64 5.15.15+dfsg-1ubuntu1 [123 kB]
146s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5help5 arm64 5.15.15-2 [165 kB]
146s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-1ubuntu1 [149 kB]
146s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-1ubuntu1 [208 kB]
146s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqt5test5t64 arm64 5.15.15+dfsg-1ubuntu1 [144 kB]
146s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
147s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB]
147s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libglu1-mesa arm64 9.0.2-1.1build1 [139 kB]
147s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB]
147s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.sip arm64 12.15.0-1 [63.5 kB]
147s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5 arm64 5.15.11+dfsg-1build1 [2577 kB]
147s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-1build1 [118 kB]
147s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol-data all 3.0.0+dfsg-1 [1394 kB]
147s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymol arm64 3.0.0+dfsg-1 [3896 kB]
147s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 pymol all 3.0.0+dfsg-1 [126 kB]
147s Fetched 44.2 MB in 4s (11.1 MB/s)
147s Selecting previously unselected package fonts-dejavu-mono.
148s (Reading database ... 
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148s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
148s Unpacking fonts-dejavu-mono (2.37-8) ...
148s Selecting previously unselected package fonts-dejavu-core.
148s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
148s Unpacking fonts-dejavu-core (2.37-8) ...
148s Selecting previously unselected package fontconfig-config.
148s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
148s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package libfontconfig1:arm64.
148s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
148s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package fontconfig.
148s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
148s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package libaec0:arm64.
148s Preparing to unpack .../05-libaec0_1.1.3-1_arm64.deb ...
148s Unpacking libaec0:arm64 (1.1.3-1) ...
148s Selecting previously unselected package libavahi-common-data:arm64.
148s Preparing to unpack .../06-libavahi-common-data_0.8-13ubuntu6_arm64.deb ...
148s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu6) ...
148s Selecting previously unselected package libavahi-common3:arm64.
148s Preparing to unpack .../07-libavahi-common3_0.8-13ubuntu6_arm64.deb ...
148s Unpacking libavahi-common3:arm64 (0.8-13ubuntu6) ...
148s Selecting previously unselected package libavahi-client3:arm64.
148s Preparing to unpack .../08-libavahi-client3_0.8-13ubuntu6_arm64.deb ...
148s Unpacking libavahi-client3:arm64 (0.8-13ubuntu6) ...
148s Selecting previously unselected package libblas3:arm64.
148s Preparing to unpack .../09-libblas3_3.12.0-3build2_arm64.deb ...
148s Unpacking libblas3:arm64 (3.12.0-3build2) ...
148s Selecting previously unselected package libcups2t64:arm64.
148s Preparing to unpack .../10-libcups2t64_2.4.10-1ubuntu2_arm64.deb ...
148s Unpacking libcups2t64:arm64 (2.4.10-1ubuntu2) ...
148s Selecting previously unselected package libdouble-conversion3:arm64.
148s Preparing to unpack .../11-libdouble-conversion3_3.3.0-1build1_arm64.deb ...
148s Unpacking libdouble-conversion3:arm64 (3.3.0-1build1) ...
148s Selecting previously unselected package libdrm-amdgpu1:arm64.
148s Preparing to unpack .../12-libdrm-amdgpu1_2.4.123-1_arm64.deb ...
148s Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ...
148s Selecting previously unselected package libdrm-radeon1:arm64.
148s Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_arm64.deb ...
148s Unpacking libdrm-radeon1:arm64 (2.4.123-1) ...
148s Selecting previously unselected package libwayland-server0:arm64.
148s Preparing to unpack .../14-libwayland-server0_1.23.0-1_arm64.deb ...
148s Unpacking libwayland-server0:arm64 (1.23.0-1) ...
148s Selecting previously unselected package libxcb-randr0:arm64.
148s Preparing to unpack .../15-libxcb-randr0_1.17.0-2_arm64.deb ...
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148s Selecting previously unselected package libglapi-mesa:arm64.
148s Preparing to unpack .../16-libglapi-mesa_24.2.3-1ubuntu1_arm64.deb ...
148s Unpacking libglapi-mesa:arm64 (24.2.3-1ubuntu1) ...
148s Selecting previously unselected package libx11-xcb1:arm64.
148s Preparing to unpack .../17-libx11-xcb1_2%3a1.8.10-2_arm64.deb ...
148s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ...
148s Selecting previously unselected package libxcb-dri2-0:arm64.
148s Preparing to unpack .../18-libxcb-dri2-0_1.17.0-2_arm64.deb ...
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148s Selecting previously unselected package libxcb-dri3-0:arm64.
148s Preparing to unpack .../19-libxcb-dri3-0_1.17.0-2_arm64.deb ...
148s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ...
148s Selecting previously unselected package libxcb-present0:arm64.
148s Preparing to unpack .../20-libxcb-present0_1.17.0-2_arm64.deb ...
148s Unpacking libxcb-present0:arm64 (1.17.0-2) ...
148s Selecting previously unselected package libxcb-sync1:arm64.
148s Preparing to unpack .../21-libxcb-sync1_1.17.0-2_arm64.deb ...
148s Unpacking libxcb-sync1:arm64 (1.17.0-2) ...
148s Selecting previously unselected package libxcb-xfixes0:arm64.
148s Preparing to unpack .../22-libxcb-xfixes0_1.17.0-2_arm64.deb ...
148s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ...
149s Selecting previously unselected package libxshmfence1:arm64.
149s Preparing to unpack .../23-libxshmfence1_1.3-1build5_arm64.deb ...
149s Unpacking libxshmfence1:arm64 (1.3-1build5) ...
149s Selecting previously unselected package mesa-libgallium:arm64.
149s Preparing to unpack .../24-mesa-libgallium_24.2.3-1ubuntu1_arm64.deb ...
149s Unpacking mesa-libgallium:arm64 (24.2.3-1ubuntu1) ...
149s Selecting previously unselected package libgbm1:arm64.
149s Preparing to unpack .../25-libgbm1_24.2.3-1ubuntu1_arm64.deb ...
149s Unpacking libgbm1:arm64 (24.2.3-1ubuntu1) ...
149s Selecting previously unselected package libwayland-client0:arm64.
149s Preparing to unpack .../26-libwayland-client0_1.23.0-1_arm64.deb ...
149s Unpacking libwayland-client0:arm64 (1.23.0-1) ...
149s Selecting previously unselected package libxcb-shm0:arm64.
149s Preparing to unpack .../27-libxcb-shm0_1.17.0-2_arm64.deb ...
149s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
149s Selecting previously unselected package libegl-mesa0:arm64.
149s Preparing to unpack .../28-libegl-mesa0_24.2.3-1ubuntu1_arm64.deb ...
149s Unpacking libegl-mesa0:arm64 (24.2.3-1ubuntu1) ...
149s Selecting previously unselected package libgfortran5:arm64.
149s Preparing to unpack .../29-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
149s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
149s Selecting previously unselected package libvulkan1:arm64.
149s Preparing to unpack .../30-libvulkan1_1.3.296.0-1_arm64.deb ...
149s Unpacking libvulkan1:arm64 (1.3.296.0-1) ...
149s Selecting previously unselected package libgl1-mesa-dri:arm64.
149s Preparing to unpack .../31-libgl1-mesa-dri_24.2.3-1ubuntu1_arm64.deb ...
149s Unpacking libgl1-mesa-dri:arm64 (24.2.3-1ubuntu1) ...
149s Selecting previously unselected package libglvnd0:arm64.
149s Preparing to unpack .../32-libglvnd0_1.7.0-1build1_arm64.deb ...
149s Unpacking libglvnd0:arm64 (1.7.0-1build1) ...
149s Selecting previously unselected package libxcb-glx0:arm64.
149s Preparing to unpack .../33-libxcb-glx0_1.17.0-2_arm64.deb ...
149s Unpacking libxcb-glx0:arm64 (1.17.0-2) ...
149s Selecting previously unselected package libxfixes3:arm64.
149s Preparing to unpack .../34-libxfixes3_1%3a6.0.0-2build1_arm64.deb ...
149s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ...
149s Selecting previously unselected package libxxf86vm1:arm64.
149s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ...
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149s Selecting previously unselected package libglx-mesa0:arm64.
149s Preparing to unpack .../36-libglx-mesa0_24.2.3-1ubuntu1_arm64.deb ...
149s Unpacking libglx-mesa0:arm64 (24.2.3-1ubuntu1) ...
149s Selecting previously unselected package libglx0:arm64.
149s Preparing to unpack .../37-libglx0_1.7.0-1build1_arm64.deb ...
149s Unpacking libglx0:arm64 (1.7.0-1build1) ...
149s Selecting previously unselected package libgl1:arm64.
149s Preparing to unpack .../38-libgl1_1.7.0-1build1_arm64.deb ...
149s Unpacking libgl1:arm64 (1.7.0-1build1) ...
149s Selecting previously unselected package libglew2.2:arm64.
149s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_arm64.deb ...
149s Unpacking libglew2.2:arm64 (2.2.0-4build1) ...
149s Selecting previously unselected package libgomp1:arm64.
149s Preparing to unpack .../40-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
149s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
149s Selecting previously unselected package libgraphite2-3:arm64.
149s Preparing to unpack .../41-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
149s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
149s Selecting previously unselected package libharfbuzz0b:arm64.
149s Preparing to unpack .../42-libharfbuzz0b_10.0.1-1_arm64.deb ...
149s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ...
149s Selecting previously unselected package libsz2:arm64.
149s Preparing to unpack .../43-libsz2_1.1.3-1_arm64.deb ...
149s Unpacking libsz2:arm64 (1.1.3-1) ...
149s Selecting previously unselected package libhdf5-103-1t64:arm64.
149s Preparing to unpack .../44-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
149s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
150s Selecting previously unselected package libhdf5-hl-100t64:arm64.
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150s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
150s Selecting previously unselected package x11-common.
150s Preparing to unpack .../46-x11-common_1%3a7.7+23ubuntu3_all.deb ...
150s Unpacking x11-common (1:7.7+23ubuntu3) ...
150s Selecting previously unselected package libice6:arm64.
150s Preparing to unpack .../47-libice6_2%3a1.1.1-1_arm64.deb ...
150s Unpacking libice6:arm64 (2:1.1.1-1) ...
150s Selecting previously unselected package libwacom-common.
150s Preparing to unpack .../48-libwacom-common_2.13.0-1_all.deb ...
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150s Selecting previously unselected package libwacom9:arm64.
150s Preparing to unpack .../49-libwacom9_2.13.0-1_arm64.deb ...
150s Unpacking libwacom9:arm64 (2.13.0-1) ...
150s Selecting previously unselected package libinput-bin.
150s Preparing to unpack .../50-libinput-bin_1.26.2-1_arm64.deb ...
150s Unpacking libinput-bin (1.26.2-1) ...
150s Selecting previously unselected package libmtdev1t64:arm64.
150s Preparing to unpack .../51-libmtdev1t64_1.1.6-1.2_arm64.deb ...
150s Unpacking libmtdev1t64:arm64 (1.1.6-1.2) ...
150s Selecting previously unselected package libinput10:arm64.
150s Preparing to unpack .../52-libinput10_1.26.2-1_arm64.deb ...
150s Unpacking libinput10:arm64 (1.26.2-1) ...
150s Selecting previously unselected package libjpeg-turbo8:arm64.
150s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ...
150s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ...
150s Selecting previously unselected package libjpeg8:arm64.
150s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_arm64.deb ...
150s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
150s Selecting previously unselected package liblapack3:arm64.
150s Preparing to unpack .../55-liblapack3_3.12.0-3build2_arm64.deb ...
150s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
150s Selecting previously unselected package libmd4c0:arm64.
150s Preparing to unpack .../56-libmd4c0_0.5.2-2_arm64.deb ...
150s Unpacking libmd4c0:arm64 (0.5.2-2) ...
150s Selecting previously unselected package libnetcdf19t64:arm64.
150s Preparing to unpack .../57-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ...
150s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ...
150s Selecting previously unselected package libpcre2-16-0:arm64.
150s Preparing to unpack .../58-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ...
150s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
150s Selecting previously unselected package libqt5core5t64:arm64.
150s Preparing to unpack .../59-libqt5core5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
150s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
150s Selecting previously unselected package libqt5dbus5t64:arm64.
150s Preparing to unpack .../60-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
150s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
150s Selecting previously unselected package libegl1:arm64.
150s Preparing to unpack .../61-libegl1_1.7.0-1build1_arm64.deb ...
150s Unpacking libegl1:arm64 (1.7.0-1build1) ...
150s Selecting previously unselected package libqt5network5t64:arm64.
150s Preparing to unpack .../62-libqt5network5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
150s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
150s Selecting previously unselected package libsm6:arm64.
150s Preparing to unpack .../63-libsm6_2%3a1.2.4-1_arm64.deb ...
150s Unpacking libsm6:arm64 (2:1.2.4-1) ...
150s Selecting previously unselected package libxcb-icccm4:arm64.
150s Preparing to unpack .../64-libxcb-icccm4_0.4.2-1_arm64.deb ...
150s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ...
150s Selecting previously unselected package libxcb-util1:arm64.
150s Preparing to unpack .../65-libxcb-util1_0.4.0-1build3_arm64.deb ...
150s Unpacking libxcb-util1:arm64 (0.4.0-1build3) ...
150s Selecting previously unselected package libxcb-image0:arm64.
150s Preparing to unpack .../66-libxcb-image0_0.4.0-2build1_arm64.deb ...
150s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ...
150s Selecting previously unselected package libxcb-keysyms1:arm64.
150s Preparing to unpack .../67-libxcb-keysyms1_0.4.0-1build4_arm64.deb ...
150s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build4) ...
150s Selecting previously unselected package libxcb-render0:arm64.
150s Preparing to unpack .../68-libxcb-render0_1.17.0-2_arm64.deb ...
150s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
151s Selecting previously unselected package libxcb-render-util0:arm64.
151s Preparing to unpack .../69-libxcb-render-util0_0.3.9-1build4_arm64.deb ...
151s Unpacking libxcb-render-util0:arm64 (0.3.9-1build4) ...
151s Selecting previously unselected package libxcb-shape0:arm64.
151s Preparing to unpack .../70-libxcb-shape0_1.17.0-2_arm64.deb ...
151s Unpacking libxcb-shape0:arm64 (1.17.0-2) ...
151s Selecting previously unselected package libxcb-xinerama0:arm64.
151s Preparing to unpack .../71-libxcb-xinerama0_1.17.0-2_arm64.deb ...
151s Unpacking libxcb-xinerama0:arm64 (1.17.0-2) ...
151s Selecting previously unselected package libxcb-xinput0:arm64.
151s Preparing to unpack .../72-libxcb-xinput0_1.17.0-2_arm64.deb ...
151s Unpacking libxcb-xinput0:arm64 (1.17.0-2) ...
151s Selecting previously unselected package libxcb-xkb1:arm64.
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151s Unpacking libxcb-xkb1:arm64 (1.17.0-2) ...
151s Selecting previously unselected package libxkbcommon-x11-0:arm64.
151s Preparing to unpack .../74-libxkbcommon-x11-0_1.6.0-1build1_arm64.deb ...
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151s Selecting previously unselected package libxrender1:arm64.
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151s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
151s Selecting previously unselected package libqt5gui5t64:arm64.
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151s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5widgets5t64:arm64.
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151s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5xml5t64:arm64.
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151s Unpacking libqt5xml5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5designer5:arm64.
151s Preparing to unpack .../79-libqt5designer5_5.15.15-2_arm64.deb ...
151s Unpacking libqt5designer5:arm64 (5.15.15-2) ...
151s Selecting previously unselected package libqt5sql5t64:arm64.
151s Preparing to unpack .../80-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
151s Unpacking libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5help5:arm64.
151s Preparing to unpack .../81-libqt5help5_5.15.15-2_arm64.deb ...
151s Unpacking libqt5help5:arm64 (5.15.15-2) ...
151s Selecting previously unselected package libqt5opengl5t64:arm64.
151s Preparing to unpack .../82-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
151s Unpacking libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5printsupport5t64:arm64.
151s Preparing to unpack .../83-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
151s Unpacking libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package libqt5test5t64:arm64.
151s Preparing to unpack .../84-libqt5test5t64_5.15.15+dfsg-1ubuntu1_arm64.deb ...
151s Unpacking libqt5test5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
151s Selecting previously unselected package python3-numpy.
151s Preparing to unpack .../85-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
151s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
152s Selecting previously unselected package libopengl0:arm64.
152s Preparing to unpack .../86-libopengl0_1.7.0-1build1_arm64.deb ...
152s Unpacking libopengl0:arm64 (1.7.0-1build1) ...
152s Selecting previously unselected package libglu1-mesa:arm64.
152s Preparing to unpack .../87-libglu1-mesa_9.0.2-1.1build1_arm64.deb ...
152s Unpacking libglu1-mesa:arm64 (9.0.2-1.1build1) ...
152s Selecting previously unselected package python3-opengl.
152s Preparing to unpack .../88-python3-opengl_3.1.7+dfsg-1_all.deb ...
152s Unpacking python3-opengl (3.1.7+dfsg-1) ...
152s Selecting previously unselected package python3-pyqt5.sip.
152s Preparing to unpack .../89-python3-pyqt5.sip_12.15.0-1_arm64.deb ...
152s Unpacking python3-pyqt5.sip (12.15.0-1) ...
152s Selecting previously unselected package python3-pyqt5.
152s Preparing to unpack .../90-python3-pyqt5_5.15.11+dfsg-1build1_arm64.deb ...
152s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ...
152s Selecting previously unselected package python3-pyqt5.qtopengl.
152s Preparing to unpack .../91-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_arm64.deb ...
152s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
152s Selecting previously unselected package pymol-data.
152s Preparing to unpack .../92-pymol-data_3.0.0+dfsg-1_all.deb ...
152s Unpacking pymol-data (3.0.0+dfsg-1) ...
152s Selecting previously unselected package python3-pymol.
152s Preparing to unpack .../93-python3-pymol_3.0.0+dfsg-1_arm64.deb ...
152s Unpacking python3-pymol (3.0.0+dfsg-1) ...
152s Selecting previously unselected package pymol.
152s Preparing to unpack .../94-pymol_3.0.0+dfsg-1_all.deb ...
152s Unpacking pymol (3.0.0+dfsg-1) ...
152s Selecting previously unselected package autopkgtest-satdep.
152s Preparing to unpack .../95-1-autopkgtest-satdep.deb ...
152s Unpacking autopkgtest-satdep (0) ...
152s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
152s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ...
152s Setting up libwayland-server0:arm64 (1.23.0-1) ...
152s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ...
152s Setting up libdouble-conversion3:arm64 (3.3.0-1build1) ...
152s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ...
152s Setting up libxcb-xinput0:arm64 (1.17.0-2) ...
152s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
152s Setting up libxcb-render0:arm64 (1.17.0-2) ...
152s Setting up libdrm-radeon1:arm64 (2.4.123-1) ...
152s Setting up libglvnd0:arm64 (1.7.0-1build1) ...
152s Setting up libxcb-glx0:arm64 (1.17.0-2) ...
152s Setting up libxcb-keysyms1:arm64 (0.4.0-1build4) ...
152s Setting up libxcb-shape0:arm64 (1.17.0-2) ...
152s Setting up x11-common (1:7.7+23ubuntu3) ...
153s Setting up libxcb-render-util0:arm64 (0.3.9-1build4) ...
153s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
153s Setting up libxcb-icccm4:arm64 (0.4.2-1) ...
153s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
153s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
153s Setting up libaec0:arm64 (1.1.3-1) ...
153s Setting up libopengl0:arm64 (1.7.0-1build1) ...
153s Setting up libxcb-util1:arm64 (0.4.0-1build3) ...
153s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ...
153s Setting up libxcb-xkb1:arm64 (1.17.0-2) ...
153s Setting up libxcb-image0:arm64 (0.4.0-2build1) ...
153s Setting up libxcb-present0:arm64 (1.17.0-2) ...
153s Setting up libqt5core5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libblas3:arm64 (3.12.0-3build2) ...
153s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
153s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ...
153s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ...
153s Setting up libxcb-sync1:arm64 (1.17.0-2) ...
153s Setting up libavahi-common-data:arm64 (0.8-13ubuntu6) ...
153s Setting up pymol-data (3.0.0+dfsg-1) ...
153s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1build1) ...
153s Setting up fonts-dejavu-mono (2.37-8) ...
153s Setting up fonts-dejavu-core (2.37-8) ...
153s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ...
153s Setting up libglapi-mesa:arm64 (24.2.3-1ubuntu1) ...
153s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
153s Setting up libvulkan1:arm64 (1.3.296.0-1) ...
153s Setting up libxcb-dri2-0:arm64 (1.17.0-2) ...
153s Setting up python3-pyqt5.sip (12.15.0-1) ...
153s Setting up libmtdev1t64:arm64 (1.1.6-1.2) ...
153s Setting up libxshmfence1:arm64 (1.3-1build5) ...
153s Setting up libxcb-randr0:arm64 (1.17.0-2) ...
153s Setting up libqt5sql5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libmd4c0:arm64 (0.5.2-2) ...
153s Setting up libharfbuzz0b:arm64 (10.0.1-1) ...
153s Setting up libglu1-mesa:arm64 (9.0.2-1.1build1) ...
153s Setting up libsz2:arm64 (1.1.3-1) ...
153s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ...
153s Setting up libwacom-common (2.13.0-1) ...
153s Setting up libwayland-client0:arm64 (1.23.0-1) ...
153s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
153s Setting up libice6:arm64 (2:1.1.1-1) ...
153s Setting up mesa-libgallium:arm64 (24.2.3-1ubuntu1) ...
153s Setting up liblapack3:arm64 (3.12.0-3build2) ...
153s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
153s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libgbm1:arm64 (24.2.3-1ubuntu1) ...
153s Setting up libwacom9:arm64 (2.13.0-1) ...
153s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
153s Setting up libgl1-mesa-dri:arm64 (24.2.3-1ubuntu1) ...
153s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libavahi-common3:arm64 (0.8-13ubuntu6) ...
153s Setting up libqt5xml5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libqt5test5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
153s Setting up libinput-bin (1.26.2-1) ...
153s Setting up libegl-mesa0:arm64 (24.2.3-1ubuntu1) ...
153s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
155s Setting up libegl1:arm64 (1.7.0-1build1) ...
155s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
155s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
155s Setting up libsm6:arm64 (2:1.2.4-1) ...
155s Setting up libavahi-client3:arm64 (0.8-13ubuntu6) ...
155s Setting up libinput10:arm64 (1.26.2-1) ...
155s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
155s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
157s Regenerating fonts cache... done.
157s Setting up libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ...
157s Setting up libglx-mesa0:arm64 (24.2.3-1ubuntu1) ...
157s Setting up libglx0:arm64 (1.7.0-1build1) ...
157s Setting up libgl1:arm64 (1.7.0-1build1) ...
157s Setting up libglew2.2:arm64 (2.2.0-4build1) ...
157s Setting up libcups2t64:arm64 (2.4.10-1ubuntu2) ...
157s Setting up python3-opengl (3.1.7+dfsg-1) ...
158s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
158s   '''OpenGL extension AMD.vertex_shader_tessellator
159s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
159s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
159s Setting up libqt5help5:arm64 (5.15.15-2) ...
159s Setting up libqt5opengl5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
159s Setting up libqt5printsupport5t64:arm64 (5.15.15+dfsg-1ubuntu1) ...
159s Setting up libqt5designer5:arm64 (5.15.15-2) ...
159s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ...
159s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
159s Setting up python3-pymol (3.0.0+dfsg-1) ...
160s Setting up pymol (3.0.0+dfsg-1) ...
160s Setting up autopkgtest-satdep (0) ...
160s Processing triggers for man-db (2.12.1-3) ...
160s Processing triggers for udev (256.5-2ubuntu4) ...
161s Processing triggers for libc-bin (2.40-1ubuntu3) ...
167s (Reading database ... 86146 files and directories currently installed.)
167s Removing autopkgtest-satdep (0) ...
168s autopkgtest [10:04:14]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
168s autopkgtest [10:04:14]: test command1: [-----------------------
168s Search pymol scripts in /tmp/autopkgtest.J337Vq/build.YGx/src/examples...
168s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/examples
169s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/chempy/generate_amber.py'...
169s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/chempy/generate_mmff.py'...
169s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/area_diff.pml'...
169s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/build_peptide.py'...
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/contact.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/dali.py
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/density.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/groel_es.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/multiclip_ray.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/packing.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/packsurf.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ref_frame.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ribosome.pml
169s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/scenes2movie.pml
169s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/seq_match_sele.pml'...
171s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ss_xfer.pml
171s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/symsph.py'...
171s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/brick01.py'...
172s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo01.py'...
172s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo02.py'...
175s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo03.py'...
178s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo04.py'...
179s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo05.py'...
179s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo06.py'...
180s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo07.py'...
181s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo08.py'...
181s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_3Dtext01.py'...
181s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_axes.py'...
181s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_label_hack.py'...
184s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_plane.py'...
185s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model01.py'...
185s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model02.py'...
185s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model03.py'...
189s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/click_ordered_list.py'...
189s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/count_molecules.py'...
189s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/extend_demo01.py'...
189s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl01.py'...
190s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl02.py'...
190s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl03.py'...
193s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/importing.py
193s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/link_demo.py'...
194s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/membrane.py'...
194s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/mutate01.pml'...
195s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/mutate02.py'...
196s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/my_ext_gui.py'...
196s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/particle01.py'...
197s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/particle02.py'...
197s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/pick_wiz.py'...
197s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/povray01.py
197s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/scenes_to_movie01.pml'...
198s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/sd_annotate.pml
198s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/sele_wiz.py'...
198s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/start_pymol.py
198s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/syncmol.py'...
198s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/tkwindow.py
198s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui01.py'...
198s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui02.py'...
198s /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
198s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
199s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/xmlrpc01.py
199s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/xmlrpc02.py'...
199s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_demo.py'...
199s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_viewer1.py'...
199s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_viewer2.py'...
199s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/examples/chempy
199s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/chempy/generate_amber.py'...
200s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/chempy/generate_mmff.py'...
200s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook
200s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/area_diff.pml'...
201s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/build_peptide.py'...
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/contact.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/dali.py
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/density.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/groel_es.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/multiclip_ray.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/packing.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/packsurf.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ref_frame.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ribosome.pml
201s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/scenes2movie.pml
201s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/seq_match_sele.pml'...
203s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/ss_xfer.pml
203s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/cookbook/symsph.py'...
203s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel
203s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/brick01.py'...
203s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo01.py'...
204s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo02.py'...
207s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo03.py'...
210s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo04.py'...
210s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo05.py'...
211s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo06.py'...
212s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo07.py'...
212s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo08.py'...
213s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_3Dtext01.py'...
213s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_axes.py'...
213s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_label_hack.py'...
216s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/cgo_plane.py'...
216s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model01.py'...
217s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model02.py'...
217s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/chempy_model03.py'...
220s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/click_ordered_list.py'...
221s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/count_molecules.py'...
221s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/extend_demo01.py'...
221s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl01.py'...
221s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl02.py'...
222s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/gl03.py'...
225s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/importing.py
225s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/link_demo.py'...
226s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/membrane.py'...
226s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/mutate01.pml'...
226s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/mutate02.py'...
228s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/my_ext_gui.py'...
228s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/particle01.py'...
229s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/particle02.py'...
229s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/pick_wiz.py'...
229s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/povray01.py
229s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/scenes_to_movie01.pml'...
230s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/sd_annotate.pml
230s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/sele_wiz.py'...
230s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/start_pymol.py
230s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/syncmol.py'...
230s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/tkwindow.py
230s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui01.py'...
230s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui02.py'...
230s /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
230s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
231s Skip /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/xmlrpc01.py
231s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/devel/xmlrpc02.py'...
231s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching
231s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_demo.py'...
231s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_viewer1.py'...
231s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/examples/launching/launch_viewer2.py'...
232s autopkgtest [10:05:19]: test command1: -----------------------]
232s command1             PASS (superficial)
232s autopkgtest [10:05:19]: test command1:  - - - - - - - - - - results - - - - - - - - - -
233s autopkgtest [10:05:20]: test command2: preparing testbed
238s Reading package lists...
238s Building dependency tree...
238s Reading state information...
239s Starting pkgProblemResolver with broken count: 0
239s Starting 2 pkgProblemResolver with broken count: 0
239s Done
239s The following NEW packages will be installed:
239s   autopkgtest-satdep
239s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
239s Need to get 0 B/700 B of archives.
239s After this operation, 0 B of additional disk space will be used.
239s Get:1 /tmp/autopkgtest.J337Vq/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
240s Selecting previously unselected package autopkgtest-satdep.
240s (Reading database ... 
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(Reading database ... 86146 files and directories currently installed.)
240s Preparing to unpack .../2-autopkgtest-satdep.deb ...
240s Unpacking autopkgtest-satdep (0) ...
240s Setting up autopkgtest-satdep (0) ...
243s (Reading database ... 86146 files and directories currently installed.)
243s Removing autopkgtest-satdep (0) ...
250s autopkgtest [10:05:37]: test command2: sh debian/tests/call-pymol-scripts data/demo
250s autopkgtest [10:05:37]: test command2: [-----------------------
251s Search pymol scripts in /tmp/autopkgtest.J337Vq/build.YGx/src/data/demo...
251s Processing new directory /tmp/autopkgtest.J337Vq/build.YGx/src/data/demo
251s Run 'pymol -c /tmp/autopkgtest.J337Vq/build.YGx/src/data/demo/cgo03.py'...
255s autopkgtest [10:05:42]: test command2: -----------------------]
255s autopkgtest [10:05:42]: test command2:  - - - - - - - - - - results - - - - - - - - - -
255s command2             PASS (superficial)
256s autopkgtest [10:05:43]: test command3: preparing testbed
262s Reading package lists...
262s Building dependency tree...
262s Reading state information...
262s Starting pkgProblemResolver with broken count: 0
262s Starting 2 pkgProblemResolver with broken count: 0
262s Done
263s The following NEW packages will be installed:
263s   autopkgtest-satdep
263s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
263s Need to get 0 B/704 B of archives.
263s After this operation, 0 B of additional disk space will be used.
263s Get:1 /tmp/autopkgtest.J337Vq/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B]
264s Selecting previously unselected package autopkgtest-satdep.
264s (Reading database ... 
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264s Preparing to unpack .../3-autopkgtest-satdep.deb ...
264s Unpacking autopkgtest-satdep (0) ...
264s Setting up autopkgtest-satdep (0) ...
267s (Reading database ... 86146 files and directories currently installed.)
267s Removing autopkgtest-satdep (0) ...
270s autopkgtest [10:05:57]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
270s autopkgtest [10:05:57]: test command3: [-----------------------
270s Search pymol scripts in /usr/share/pymol/examples...
270s Processing new directory /usr/share/pymol/examples
270s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
270s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
270s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
270s Skip /usr/share/pymol/examples/cookbook/contact.pml
270s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
270s Skip /usr/share/pymol/examples/cookbook/packing.pml
270s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
270s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
270s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
270s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
270s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
270s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
271s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
271s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
274s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
278s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
278s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
278s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
280s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
284s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
284s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
284s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
284s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
288s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
288s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
288s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
288s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
289s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
289s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
293s Skip /usr/share/pymol/examples/devel/importing.py
293s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
293s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
293s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
294s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
295s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
296s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
296s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
297s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
297s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
297s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
297s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
298s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
298s Skip /usr/share/pymol/examples/devel/tkwindow.py
298s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
298s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
299s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
299s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
299s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
299s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
299s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
299s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
299s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
300s Processing new directory /usr/share/pymol/examples/chempy
300s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
300s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
300s Processing new directory /usr/share/pymol/examples/cookbook
300s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
300s Skip /usr/share/pymol/examples/cookbook/contact.pml
300s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
300s Skip /usr/share/pymol/examples/cookbook/packing.pml
300s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
300s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
300s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
300s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
300s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
300s Processing new directory /usr/share/pymol/examples/devel
300s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
301s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
301s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
304s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
307s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
308s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
308s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
309s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
315s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
317s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
317s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
318s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
318s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
318s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
319s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
322s Skip /usr/share/pymol/examples/devel/importing.py
322s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
322s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
323s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
323s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
325s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
325s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
327s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
327s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
327s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
327s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
327s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
327s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
327s Skip /usr/share/pymol/examples/devel/tkwindow.py
327s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
327s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
327s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
327s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
327s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
327s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
327s Processing new directory /usr/share/pymol/examples/launching
327s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
327s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
328s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
328s autopkgtest [10:06:55]: test command3: -----------------------]
334s autopkgtest [10:07:01]: test command3:  - - - - - - - - - - results - - - - - - - - - -
334s command3             PASS (superficial)
361s autopkgtest [10:07:28]: test command4: preparing testbed
412s Reading package lists...
412s Building dependency tree...
412s Reading state information...
413s Starting pkgProblemResolver with broken count: 0
413s Starting 2 pkgProblemResolver with broken count: 0
413s Done
413s The following NEW packages will be installed:
413s   autopkgtest-satdep
413s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
413s Need to get 0 B/700 B of archives.
413s After this operation, 0 B of additional disk space will be used.
413s Get:1 /tmp/autopkgtest.J337Vq/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
414s Selecting previously unselected package autopkgtest-satdep.
414s (Reading database ... 
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(Reading database ... 86146 files and directories currently installed.)
414s Preparing to unpack .../4-autopkgtest-satdep.deb ...
414s Unpacking autopkgtest-satdep (0) ...
414s Setting up autopkgtest-satdep (0) ...
417s (Reading database ... 86146 files and directories currently installed.)
417s Removing autopkgtest-satdep (0) ...
418s autopkgtest [10:08:25]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
418s autopkgtest [10:08:25]: test command4: [-----------------------
419s Search pymol scripts in /usr/share/pymol/examples/cookbook...
419s Processing new directory /usr/share/pymol/examples/cookbook
419s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
420s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
421s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
421s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
423s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
451s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
454s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
454s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
456s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
458s autopkgtest [10:09:05]: test command4: -----------------------]
459s autopkgtest [10:09:06]: test command4:  - - - - - - - - - - results - - - - - - - - - -
459s command4             PASS (superficial)
459s autopkgtest [10:09:06]: test command5: preparing testbed
463s Reading package lists...
464s Building dependency tree...
464s Reading state information...
465s Starting pkgProblemResolver with broken count: 0
465s Starting 2 pkgProblemResolver with broken count: 0
465s Done
466s The following NEW packages will be installed:
467s   autopkgtest-satdep
467s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
467s Need to get 0 B/700 B of archives.
467s After this operation, 0 B of additional disk space will be used.
467s Get:1 /tmp/autopkgtest.J337Vq/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
467s Selecting previously unselected package autopkgtest-satdep.
467s (Reading database ... 
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(Reading database ... 86146 files and directories currently installed.)
467s Preparing to unpack .../5-autopkgtest-satdep.deb ...
467s Unpacking autopkgtest-satdep (0) ...
467s Setting up autopkgtest-satdep (0) ...
469s (Reading database ... 86146 files and directories currently installed.)
469s Removing autopkgtest-satdep (0) ...
470s autopkgtest [10:09:17]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
470s autopkgtest [10:09:17]: test command5: [-----------------------
470s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
470s  Copyright (c) Schrodinger, LLC.
470s  All Rights Reserved.
470s  
470s     Created by Warren L. DeLano, Ph.D. 
470s  
470s     PyMOL is user-supported open-source software.  Although some versions
470s     are freely available, PyMOL is not in the public domain.
470s  
470s     If PyMOL is helpful in your work or study, then please volunteer 
470s     support for our ongoing efforts to create open and affordable scientific
470s     software by purchasing a PyMOL Maintenance and/or Support subscription.
470s 
470s     More information can be found at "http://www.pymol.org".
470s  
470s     Enter "help" for a list of commands.
470s     Enter "help <command-name>" for information on a specific command.
470s 
470s  Hit ESC anytime to toggle between text and graphics.
470s 
470s  Setting: wizard_prompt_mode set to 3.
470s  Detected 2 CPU cores.  Enabled multithreaded rendering.
470s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
470s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
470s PyMOL>wizard annotation
470s PyMOL>set wizard_prompt_mode,3
470s PyMOL>load_annotated_sdf demo.sdf
470s HBA ['[1, 25, 26, 34]\n']
470s HBD ['[20]\n']
470s ACD_NUMBER ['MFCD02681585\n']
470s SCORE ['-222.044\n']
470s MOLID ['MFCD02681585\n']
470s HBA ['[1, 21]\n']
470s HBD ['[]\n']
470s ACD_NUMBER ['MFCD01567969\n']
470s SCORE ['-219.984\n']
470s MOLID ['MFCD01567969\n']
470s HBA ['[1, 24]\n']
470s HBD ['[10, 22]\n']
470s ACD_NUMBER ['MFCD00023789\n']
470s SCORE ['-219.911\n']
470s MOLID ['MFCD00023789\n']
470s HBA ['[1, 11]\n']
470s HBD ['[3]\n']
470s ACD_NUMBER ['MFCD02579443\n']
470s SCORE ['-219.769\n']
470s MOLID ['MFCD02579443\n']
470s HBA ['[1, 11]\n']
470s HBD ['[9]\n']
470s ACD_NUMBER ['MFCD02579410\n']
470s SCORE ['-214.809\n']
470s MOLID ['MFCD02579410\n']
470s HBA ['[1, 20, 22, 27, 32]\n']
470s HBD ['[10, 20]\n']
470s ACD_NUMBER ['MFCD02579135\n']
470s SCORE ['-213.630\n']
470s MOLID ['MFCD02579135\n']
470s HBA ['[1, 11, 14, 21]\n']
470s HBD ['[]\n']
470s ACD_NUMBER ['MFCD02681468\n']
470s SCORE ['-213.462\n']
470s MOLID ['MFCD02681468\n']
470s HBA ['[1, 13, 14, 29]\n']
470s HBD ['[]\n']
470s ACD_NUMBER ['MFCD00141070\n']
470s SCORE ['-213.240\n']
470s MOLID ['MFCD00141070\n']
470s HBA ['[1, 8]\n']
470s HBD ['[]\n']
470s ACD_NUMBER ['MFCD02983625\n']
470s SCORE ['-211.422\n']
470s MOLID ['MFCD02983625\n']
470s HBA ['[1, 11]\n']
470s HBD ['[3, 12]\n']
470s ACD_NUMBER ['MFCD00115818\n']
470s SCORE ['-210.482\n']
470s MOLID ['MFCD00115818\n']
471s autopkgtest [10:09:18]: test command5: -----------------------]
471s command5             PASS (superficial)
471s autopkgtest [10:09:18]: test command5:  - - - - - - - - - - results - - - - - - - - - -
472s autopkgtest [10:09:19]: @@@@@@@@@@@@@@@@@@@@ summary
472s command1             PASS (superficial)
472s command2             PASS (superficial)
472s command3             PASS (superficial)
472s command4             PASS (superficial)
472s command5             PASS (superficial)
488s nova [W] Skipping flock in bos03-arm64
488s Creating nova instance adt-plucky-arm64-pymol-20241113-100126-juju-7f2275-prod-proposed-migration-environment-20-9ee7119a-e184-47b5-a677-38493e46af71 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...