0s autopkgtest [09:59:57]: starting date and time: 2024-11-13 09:59:57+0000 0s autopkgtest [09:59:57]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [09:59:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.datq2g6y/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pykdtree --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-41.secgroup --name adt-plucky-arm64-pykdtree-20241113-095957-juju-7f2275-prod-proposed-migration-environment-2-0f4d1a27-a912-43af-aad7-5e42a924f9fe --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 92s autopkgtest [10:01:29]: testbed dpkg architecture: arm64 93s autopkgtest [10:01:30]: testbed apt version: 2.9.8 93s autopkgtest [10:01:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 94s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 94s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 94s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 94s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 94s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 94s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 95s Fetched 1794 kB in 1s (1866 kB/s) 95s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Calculating upgrade... 100s The following NEW packages will be installed: 100s python3.13-gdbm 100s The following packages will be upgraded: 100s libpython3-stdlib python3 python3-gdbm python3-minimal 100s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 101 kB of archives. 100s After this operation, 141 kB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 100s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 100s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 101s Fetched 101 kB in 0s (280 kB/s) 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 101s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 101s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 101s Setting up python3-minimal (3.12.7-1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 102s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 102s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 102s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 102s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 102s Selecting previously unselected package python3.13-gdbm. 102s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 102s Unpacking python3.13-gdbm (3.13.0-2) ... 102s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 102s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 102s Setting up python3.13-gdbm (3.13.0-2) ... 102s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 102s Setting up python3 (3.12.7-1) ... 103s Setting up python3-gdbm:arm64 (3.12.7-1) ... 103s Processing triggers for man-db (2.12.1-3) ... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [10:01:50]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 114s autopkgtest [10:01:51]: @@@@@@@@@@@@@@@@@@@@ apt-source pykdtree 115s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (dsc) [2239 B] 115s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (tar) [20.5 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (diff) [4548 B] 116s gpgv: Signature made Sat Sep 7 16:03:46 2024 UTC 116s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 116s gpgv: issuer "antonio.valentino@tiscali.it" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./pykdtree_1.3.13+ds-1.dsc: no acceptable signature found 116s autopkgtest [10:01:53]: testing package pykdtree version 1.3.13+ds-1 117s autopkgtest [10:01:54]: build not needed 118s autopkgtest [10:01:55]: test pybuild-autopkgtest: preparing testbed 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 123s The following additional packages will be installed: 123s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 123s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 123s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 123s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 123s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 123s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 123s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 123s libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 123s libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev 123s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 123s libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtool libtsan2 123s libubsan1 m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 123s python3-all python3-all-dev python3-build python3-dev python3-iniconfig 123s python3-installer python3-mako python3-numpy python3-packaging 123s python3-pluggy python3-pykdtree python3-pyproject-hooks python3-pytest 123s python3-toml python3-wheel python3.12-dev python3.13 python3.13-dev 123s python3.13-minimal zlib1g-dev 123s Suggested packages: 123s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 123s cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex 123s bison gdb gcc-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev 123s libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler 123s gcj-jdk m4-doc libmail-box-perl python3-pip python3-venv python-build-doc 123s python-installer-doc python-mako-doc python3-beaker gfortran 123s python-numpy-doc python3.13-venv python3.13-doc binfmt-support 123s Recommended packages: 123s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 123s The following NEW packages will be installed: 123s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 123s cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper 123s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 123s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 123s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 123s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 123s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 123s libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 123s libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev 123s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 123s libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtool libtsan2 123s libubsan1 m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 123s python3-all python3-all-dev python3-build python3-dev python3-iniconfig 123s python3-installer python3-mako python3-numpy python3-packaging 123s python3-pluggy python3-pykdtree python3-pyproject-hooks python3-pytest 123s python3-toml python3-wheel python3.12-dev python3.13 python3.13-dev 123s python3.13-minimal zlib1g-dev 123s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 123s Need to get 95.5 MB/95.6 MB of archives. 123s After this operation, 350 MB of additional disk space will be used. 123s Get:1 /tmp/autopkgtest.nRly3d/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [832 B] 123s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 123s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 123s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 123s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 124s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 124s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 124s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 124s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 124s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 124s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 124s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 124s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 124s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 124s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 124s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 124s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 124s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 124s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 124s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 124s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 124s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 124s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 124s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 125s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 125s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 125s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 125s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 125s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 126s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 126s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 126s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 126s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 126s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu1 [2355 kB] 126s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 126s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 126s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 126s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 126s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 126s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 126s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 126s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 126s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 126s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 126s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 126s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 126s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 126s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 126s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB] 126s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 126s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 126s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 126s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 126s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 126s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 126s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 126s Get:57 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB] 126s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 126s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB] 126s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB] 127s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B] 127s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 127s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 127s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 127s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 127s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB] 127s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 127s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 127s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 127s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 127s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 127s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 127s Get:73 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB] 127s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB] 127s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B] 127s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 127s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-mako all 1.3.6-1 [63.5 kB] 127s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 127s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 127s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pykdtree arm64 1.3.13+ds-1 [65.4 kB] 127s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 128s Fetched 95.5 MB in 4s (22.7 MB/s) 128s Selecting previously unselected package libpython3.13-minimal:arm64. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 128s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 128s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 128s Selecting previously unselected package python3.13-minimal. 128s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 128s Unpacking python3.13-minimal (3.13.0-2) ... 128s Selecting previously unselected package m4. 128s Preparing to unpack .../02-m4_1.4.19-4build1_arm64.deb ... 128s Unpacking m4 (1.4.19-4build1) ... 128s Selecting previously unselected package autoconf. 128s Preparing to unpack .../03-autoconf_2.72-3_all.deb ... 128s Unpacking autoconf (2.72-3) ... 128s Selecting previously unselected package autotools-dev. 128s Preparing to unpack .../04-autotools-dev_20220109.1_all.deb ... 128s Unpacking autotools-dev (20220109.1) ... 128s Selecting previously unselected package automake. 128s Preparing to unpack .../05-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 128s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 128s Selecting previously unselected package autopoint. 128s Preparing to unpack .../06-autopoint_0.22.5-2_all.deb ... 128s Unpacking autopoint (0.22.5-2) ... 128s Selecting previously unselected package libisl23:arm64. 128s Preparing to unpack .../07-libisl23_0.27-1_arm64.deb ... 128s Unpacking libisl23:arm64 (0.27-1) ... 129s Selecting previously unselected package libmpc3:arm64. 129s Preparing to unpack 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Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 129s Selecting previously unselected package libgomp1:arm64. 129s Preparing to unpack .../14-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 129s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 129s Selecting previously unselected package libitm1:arm64. 129s Preparing to unpack .../15-libitm1_14.2.0-8ubuntu1_arm64.deb ... 129s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 129s Selecting previously unselected package libasan8:arm64. 129s Preparing to unpack .../16-libasan8_14.2.0-8ubuntu1_arm64.deb ... 129s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package liblsan0:arm64. 130s Preparing to unpack .../17-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package libtsan2:arm64. 130s Preparing to unpack .../18-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package libubsan1:arm64. 130s Preparing to unpack .../19-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package libhwasan0:arm64. 130s Preparing to unpack .../20-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package libgcc-14-dev:arm64. 130s Preparing to unpack .../21-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 130s Preparing to unpack .../22-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 130s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 131s Selecting previously unselected package gcc-14. 131s Preparing to unpack .../23-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 131s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 131s Selecting previously unselected package gcc-aarch64-linux-gnu. 131s 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dwz. 133s Preparing to unpack .../40-dwz_0.15-1build6_arm64.deb ... 133s Unpacking dwz (0.15-1build6) ... 133s Selecting previously unselected package gettext. 133s Preparing to unpack .../41-gettext_0.22.5-2_arm64.deb ... 133s Unpacking gettext (0.22.5-2) ... 133s Selecting previously unselected package intltool-debian. 133s Preparing to unpack .../42-intltool-debian_0.35.0+20060710.6_all.deb ... 133s Unpacking intltool-debian (0.35.0+20060710.6) ... 133s Selecting previously unselected package po-debconf. 133s Preparing to unpack .../43-po-debconf_1.0.21+nmu1_all.deb ... 133s Unpacking po-debconf (1.0.21+nmu1) ... 133s Selecting previously unselected package debhelper. 133s Preparing to unpack .../44-debhelper_13.20ubuntu1_all.deb ... 133s Unpacking debhelper (13.20ubuntu1) ... 133s Selecting previously unselected package dh-python. 133s Preparing to unpack .../45-dh-python_6.20241024_all.deb ... 133s Unpacking dh-python (6.20241024) ... 133s Selecting previously unselected package 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(3.12.0-3build2) ... 138s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 138s Setting up python3-packaging (24.1-1) ... 138s Setting up libexpat1-dev:arm64 (2.6.2-2) ... 138s Setting up python3-pyproject-hooks (1.2.0-1) ... 139s Setting up libmpc3:arm64 (1.3.1-1build2) ... 139s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ... 142s Setting up autopoint (0.22.5-2) ... 142s Setting up python3-toml (0.10.2-1) ... 142s Setting up python3-installer (0.7.0+dfsg1-3) ... 142s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 142s Setting up autoconf (2.72-3) ... 142s Setting up python3-pluggy (1.5.0-1) ... 143s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ... 143s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 143s Setting up dwz (0.15-1build6) ... 143s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ... 143s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ... 143s Setting up debugedit (1:5.1-1) ... 143s Setting up python3.13-minimal (3.13.0-2) ... 144s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ... 144s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 144s Setting up libisl23:arm64 (0.27-1) ... 144s Setting up python3-build (1.2.2-1) ... 144s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 145s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ... 145s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ... 145s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ... 145s Setting up python3-mako (1.3.6-1) ... 145s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 145s Setting up libpython3.13:arm64 (3.13.0-2) ... 145s Setting up automake (1:1.16.5-1.3ubuntu1) ... 145s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 145s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 145s Setting up liblapack3:arm64 (3.12.0-3build2) ... 145s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 145s Setting up gettext (0.22.5-2) ... 145s Setting up python3.13 (3.13.0-2) ... 147s Setting up pybuild-plugin-pyproject (6.20241024) ... 147s Setting up python3-pytest (8.3.3-1) ... 148s Setting up python3-all (3.12.7-1) ... 148s Setting up libpython3.12-dev:arm64 (3.12.7-3) ... 148s Setting up intltool-debian (0.35.0+20060710.6) ... 148s Setting up libpython3.13-dev:arm64 (3.13.0-2) ... 148s Setting up python3.12-dev (3.12.7-3) ... 148s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 153s Setting up libjs-sphinxdoc (7.4.7-4) ... 153s Setting up dh-strip-nondeterminism (1.14.0-1) ... 153s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 153s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 153s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 153s Setting up python3-pykdtree (1.3.13+ds-1) ... 153s Setting up libpython3-dev:arm64 (3.12.7-1) ... 153s Setting up python3.13-dev (3.13.0-2) ... 153s Setting up po-debconf (1.0.21+nmu1) ... 153s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 153s Setting up libpython3-all-dev:arm64 (3.12.7-1) ... 153s Setting up python3-dev (3.12.7-1) ... 153s Setting up cpp-14 (14.2.0-8ubuntu1) ... 153s Setting up cpp (4:14.1.0-2ubuntu1) ... 153s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 153s Setting up python3-all-dev (3.12.7-1) ... 153s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 153s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 153s Setting up gcc-14 (14.2.0-8ubuntu1) ... 153s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 153s Setting up g++-14 (14.2.0-8ubuntu1) ... 153s Setting up libtool (2.4.7-7build1) ... 153s Setting up gcc (4:14.1.0-2ubuntu1) ... 153s Setting up dh-autoreconf (20) ... 153s Setting up g++ (4:14.1.0-2ubuntu1) ... 153s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 153s Setting up build-essential (12.10ubuntu1) ... 153s Setting up debhelper (13.20ubuntu1) ... 153s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 153s Setting up autopkgtest-satdep (0) ... 153s Processing triggers for systemd (256.5-2ubuntu4) ... 153s Processing triggers for man-db (2.12.1-3) ... 154s Processing triggers for install-info (7.1.1-1) ... 155s Processing triggers for libc-bin (2.40-1ubuntu3) ... 163s (Reading database ... 85253 files and directories currently installed.) 163s Removing autopkgtest-satdep (0) ... 164s autopkgtest [10:02:41]: test pybuild-autopkgtest: pybuild-autopkgtest 164s autopkgtest [10:02:41]: test pybuild-autopkgtest: [----------------------- 165s pybuild-autopkgtest 165s I: pybuild base:311: cd /tmp/autopkgtest.nRly3d/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree 166s ============================= test session starts ============================== 166s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 166s rootdir: /tmp/autopkgtest.nRly3d/autopkgtest_tmp/build 166s configfile: pyproject.toml 166s plugins: typeguard-4.4.1 166s collected 0 items / 1 error 166s 166s ==================================== ERRORS ==================================== 166s ________________________ ERROR collecting test_tree.py _________________________ 166s ImportError while importing test module '/usr/lib/python3/dist-packages/pykdtree/test_tree.py'. 166s Hint: make sure your test modules/packages have valid Python names. 166s Traceback: 166s /usr/lib/python3/dist-packages/pykdtree/__init__.py:4: in 166s from . import kdtree 166s E ImportError: cannot import name 'kdtree' from partially initialized module 'pykdtree' (most likely due to a circular import) (/usr/lib/python3/dist-packages/pykdtree/__init__.py) 166s 166s The above exception was the direct cause of the following exception: 166s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 166s return _bootstrap._gcd_import(name[level:], package, level) 166s /usr/lib/python3/dist-packages/pykdtree/__init__.py:6: in 166s raise ImportError( 166s E ImportError: Pykdtree failed to import its C extension. This usually means it was built with OpenMP (C-level parallelization library) support but could not find it on your system. To enable better performance OpenMP must be installed (ex. ``brew install omp`` on Mac with HomeBrew). Otherwise, try installing Pykdtree from source (ex. ``pip install --no-binary pykdtree --force-install pykdtree``). 166s =========================== short test summary info ============================ 166s ERROR test_tree.py 166s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 166s =============================== 1 error in 0.14s =============================== 166s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.nRly3d/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree 166s I: pybuild base:311: cd /tmp/autopkgtest.nRly3d/autopkgtest_tmp/build; python3.12 -m pytest --pyargs pykdtree 167s ============================= test session starts ============================== 167s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 167s rootdir: /tmp/autopkgtest.nRly3d/autopkgtest_tmp/build 167s configfile: pyproject.toml 167s plugins: typeguard-4.4.1 167s collected 17 items 167s 167s test_tree.py ................. [100%] 167s 167s ============================== 17 passed in 0.30s ============================== 167s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 167s make: *** [/tmp/RFGKrdcxwT/run:4: pybuild-autopkgtest] Error 25 167s pybuild-autopkgtest: error: /tmp/RFGKrdcxwT/run pybuild-autopkgtest returned exit code 2 167s autopkgtest [10:02:44]: test pybuild-autopkgtest: -----------------------] 168s autopkgtest [10:02:45]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 168s pybuild-autopkgtest FAIL non-zero exit status 25 168s autopkgtest [10:02:45]: @@@@@@@@@@@@@@@@@@@@ summary 168s pybuild-autopkgtest FAIL non-zero exit status 25 197s virt: nova [W] Skipping flock in bos03-arm64 197s virt: Creating nova instance adt-plucky-arm64-pykdtree-20241113-095957-juju-7f2275-prod-proposed-migration-environment-2-0f4d1a27-a912-43af-aad7-5e42a924f9fe from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...