0s autopkgtest [09:01:15]: starting date and time: 2024-11-13 09:01:15+0000
  0s autopkgtest [09:01:15]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [09:01:15]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1m29z38z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-8.secgroup --name adt-plucky-arm64-pybigwig-20241113-090114-juju-7f2275-prod-proposed-migration-environment-20-e2a1e20d-53ff-49f3-9687-574d4d4d59c4 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
107s autopkgtest [09:03:02]: testbed dpkg architecture: arm64
107s autopkgtest [09:03:02]: testbed apt version: 2.9.8
107s autopkgtest [09:03:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup
108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
108s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
108s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
108s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
108s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
109s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
109s Fetched 1793 kB in 1s (2222 kB/s)
109s Reading package lists...
111s Reading package lists...
112s Building dependency tree...
112s Reading state information...
112s Calculating upgrade...
113s The following NEW packages will be installed:
113s   python3.13-gdbm
113s The following packages will be upgraded:
113s   libpython3-stdlib python3 python3-gdbm python3-minimal
113s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
113s Need to get 101 kB of archives.
113s After this operation, 141 kB of additional disk space will be used.
113s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
113s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
113s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
113s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
114s Fetched 101 kB in 0s (280 kB/s)
114s (Reading database ... 
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(Reading database ... 79924 files and directories currently installed.)
114s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
114s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
114s Setting up python3-minimal (3.12.7-1) ...
114s (Reading database ... 
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(Reading database ... 79924 files and directories currently installed.)
114s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
114s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
114s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
114s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
114s Selecting previously unselected package python3.13-gdbm.
114s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
114s Unpacking python3.13-gdbm (3.13.0-2) ...
115s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
115s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
115s Setting up python3.13-gdbm (3.13.0-2) ...
115s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
115s Setting up python3 (3.12.7-1) ...
115s Setting up python3-gdbm:arm64 (3.12.7-1) ...
115s Processing triggers for man-db (2.12.1-3) ...
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
117s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
117s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
117s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
118s Reading package lists...
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Calculating upgrade...
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s autopkgtest [09:03:19]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
124s autopkgtest [09:03:19]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig
125s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (dsc) [2328 B]
125s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (tar) [31.8 kB]
125s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (diff) [4860 B]
125s gpgv: Signature made Sun Nov  3 16:14:37 2024 UTC
125s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
125s gpgv:                issuer "emollier@debian.org"
125s gpgv: Can't check signature: No public key
125s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.23+dfsg-1.dsc: no acceptable signature found
125s autopkgtest [09:03:20]: testing package pybigwig version 0.3.23+dfsg-1
126s autopkgtest [09:03:21]: build not needed
126s autopkgtest [09:03:21]: test command1: preparing testbed
129s Reading package lists...
130s Building dependency tree...
131s Reading state information...
131s Starting pkgProblemResolver with broken count: 0
131s Starting 2 pkgProblemResolver with broken count: 0
131s Done
131s The following additional packages will be installed:
131s   libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.13-minimal
131s   libpython3.13-stdlib python3-all python3-numpy python3-pybigwig python3.13
131s   python3.13-minimal
131s Suggested packages:
131s   gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv
131s   python3.13-doc binfmt-support
131s The following NEW packages will be installed:
131s   autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3
131s   libpython3.13-minimal libpython3.13-stdlib python3-all python3-numpy
131s   python3-pybigwig python3.13 python3.13-minimal
131s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
131s Need to get 12.4 MB/12.4 MB of archives.
131s After this operation, 51.9 MB of additional disk space will be used.
131s Get:1 /tmp/autopkgtest.4xeheq/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B]
131s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
131s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
132s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbigwig0t64 arm64 0.4.7+dfsg-3.1build2 [29.9 kB]
132s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
132s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
132s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
132s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
132s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
132s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
132s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
133s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybigwig arm64 0.3.23+dfsg-1 [48.4 kB]
133s Fetched 12.4 MB in 2s (5695 kB/s)
133s Selecting previously unselected package libpython3.13-minimal:arm64.
133s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
133s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ...
133s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
133s Selecting previously unselected package python3.13-minimal.
133s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ...
133s Unpacking python3.13-minimal (3.13.0-2) ...
134s Selecting previously unselected package libbigwig0t64:arm64.
134s Preparing to unpack .../02-libbigwig0t64_0.4.7+dfsg-3.1build2_arm64.deb ...
134s Unpacking libbigwig0t64:arm64 (0.4.7+dfsg-3.1build2) ...
134s Selecting previously unselected package libblas3:arm64.
134s Preparing to unpack .../03-libblas3_3.12.0-3build2_arm64.deb ...
134s Unpacking libblas3:arm64 (3.12.0-3build2) ...
134s Selecting previously unselected package libgfortran5:arm64.
134s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
134s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
134s Selecting previously unselected package liblapack3:arm64.
134s Preparing to unpack .../05-liblapack3_3.12.0-3build2_arm64.deb ...
134s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
134s Selecting previously unselected package libpython3.13-stdlib:arm64.
134s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
134s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
134s Selecting previously unselected package python3.13.
134s Preparing to unpack .../07-python3.13_3.13.0-2_arm64.deb ...
134s Unpacking python3.13 (3.13.0-2) ...
134s Selecting previously unselected package python3-all.
134s Preparing to unpack .../08-python3-all_3.12.7-1_arm64.deb ...
134s Unpacking python3-all (3.12.7-1) ...
134s Selecting previously unselected package python3-numpy.
134s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
134s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
134s Selecting previously unselected package python3-pybigwig.
134s Preparing to unpack .../10-python3-pybigwig_0.3.23+dfsg-1_arm64.deb ...
134s Unpacking python3-pybigwig (0.3.23+dfsg-1) ...
134s Selecting previously unselected package autopkgtest-satdep.
134s Preparing to unpack .../11-1-autopkgtest-satdep.deb ...
134s Unpacking autopkgtest-satdep (0) ...
134s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
134s Setting up libblas3:arm64 (3.12.0-3build2) ...
134s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
134s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
134s Setting up python3.13-minimal (3.13.0-2) ...
136s Setting up libbigwig0t64:arm64 (0.4.7+dfsg-3.1build2) ...
136s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
136s Setting up liblapack3:arm64 (3.12.0-3build2) ...
136s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
136s Setting up python3.13 (3.13.0-2) ...
137s Setting up python3-all (3.12.7-1) ...
137s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
141s Setting up python3-pybigwig (0.3.23+dfsg-1) ...
141s Setting up autopkgtest-satdep (0) ...
141s Processing triggers for systemd (256.5-2ubuntu4) ...
141s Processing triggers for man-db (2.12.1-3) ...
142s Processing triggers for libc-bin (2.40-1ubuntu3) ...
145s (Reading database ... 81585 files and directories currently installed.)
145s Removing autopkgtest-satdep (0) ...
145s autopkgtest [09:03:40]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done
145s autopkgtest [09:03:40]: test command1: [-----------------------
146s Traceback (most recent call last):
146s   File "/tmp/autopkgtest.4xeheq/build.NO1/src/pyBigWigTest/test.py", line 1, in <module>
146s     import pyBigWig
146s ModuleNotFoundError: No module named 'pyBigWig'
146s autopkgtest [09:03:41]: test command1: -----------------------]
147s command1             FAIL non-zero exit status 1
147s autopkgtest [09:03:42]: test command1:  - - - - - - - - - - results - - - - - - - - - -
147s autopkgtest [09:03:42]: test command1:  - - - - - - - - - - stderr - - - - - - - - - -
147s Traceback (most recent call last):
147s   File "/tmp/autopkgtest.4xeheq/build.NO1/src/pyBigWigTest/test.py", line 1, in <module>
147s     import pyBigWig
147s ModuleNotFoundError: No module named 'pyBigWig'
147s autopkgtest [09:03:42]: @@@@@@@@@@@@@@@@@@@@ summary
147s command1             FAIL non-zero exit status 1
159s nova [W] Skipping flock in bos03-arm64
159s Creating nova instance adt-plucky-arm64-pybigwig-20241113-090114-juju-7f2275-prod-proposed-migration-environment-20-e2a1e20d-53ff-49f3-9687-574d4d4d59c4 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...