0s autopkgtest [19:55:00]: starting date and time: 2024-11-16 19:55:00+0000 0s autopkgtest [19:55:00]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:55:00]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ctnrhyhp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openmpi,src:armci-mpi,src:murasaki --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/5.0.5-6 armci-mpi/0.4-4 murasaki/1.68.6-14' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-33.secgroup --name adt-plucky-arm64-prime-phylo-20241116-195500-juju-7f2275-prod-proposed-migration-environment-15-c02e18a0-618a-42d6-942a-60edfda64e21 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [19:56:21]: testbed dpkg architecture: arm64 81s autopkgtest [19:56:21]: testbed apt version: 2.9.8 81s autopkgtest [19:56:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 83s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 83s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 83s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [166 kB] 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [783 kB] 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6404 B] 84s Fetched 2197 kB in 1s (2333 kB/s) 84s Reading package lists... 86s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 87s The following NEW packages will be installed: 87s python3.13-gdbm 87s The following packages will be upgraded: 88s debianutils libftdi1-2 libnvme1t64 python3-gdbm 88s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 244 kB of archives. 88s After this operation, 141 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 debianutils arm64 5.21 [92.9 kB] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 88s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libftdi1-2 arm64 1.5-7build1 [28.5 kB] 88s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11-2 [83.7 kB] 88s Fetched 244 kB in 0s (587 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79964 files and directories currently installed.) 89s Preparing to unpack .../debianutils_5.21_arm64.deb ... 89s Unpacking debianutils (5.21) over (5.20) ... 89s Setting up debianutils (5.21) ... 89s Selecting previously unselected package python3.13-gdbm. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79964 files and directories currently installed.) 89s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 89s Unpacking python3.13-gdbm (3.13.0-2) ... 89s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 89s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 89s Preparing to unpack .../libftdi1-2_1.5-7build1_arm64.deb ... 89s Unpacking libftdi1-2:arm64 (1.5-7build1) over (1.5-7) ... 89s Preparing to unpack .../libnvme1t64_1.11-2_arm64.deb ... 89s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 89s Setting up libftdi1-2:arm64 (1.5-7build1) ... 89s Setting up libnvme1t64 (1.11-2) ... 89s Setting up python3.13-gdbm (3.13.0-2) ... 89s Setting up python3-gdbm:arm64 (3.12.7-1) ... 89s Processing triggers for man-db (2.13.0-1) ... 90s Processing triggers for libc-bin (2.40-1ubuntu3) ... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 92s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 92s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 93s Reading package lists... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s autopkgtest [19:56:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 98s autopkgtest [19:56:38]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo 100s Get:1 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (dsc) [2366 B] 100s Get:2 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (tar) [751 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (diff) [10.5 kB] 100s gpgv: Signature made Wed Aug 7 15:34:26 2024 UTC 100s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 100s gpgv: issuer "emollier@debian.org" 100s gpgv: Can't check signature: No public key 100s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-12.dsc: no acceptable signature found 100s autopkgtest [19:56:40]: testing package prime-phylo version 1.0.11-12 100s autopkgtest [19:56:40]: build not needed 101s autopkgtest [19:56:41]: test run-unit-test: preparing testbed 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 103s The following additional packages will be installed: 103s libamd-comgr2 libamdhip64-5 libblas3 libboost-mpi1.83.0 103s libboost-serialization1.83.0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 103s libfabric1 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 103s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 103s libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 librdmacm1t64 libucx0 103s libxnvctrl0 ocl-icd-libopencl1 prime-phylo 103s Suggested packages: 103s opencl-icd njplot treeviewx muscle probalign mafft python3-biopython mrbayes 103s phyml raxml 103s The following NEW packages will be installed: 103s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libblas3 libboost-mpi1.83.0 103s libboost-serialization1.83.0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 103s libfabric1 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 103s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 103s libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 librdmacm1t64 libucx0 103s libxnvctrl0 ocl-icd-libopencl1 prime-phylo 104s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 58.2 MB/58.2 MB of archives. 104s After this operation, 243 MB of additional disk space will be used. 104s Get:1 /tmp/autopkgtest.rJfd31/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 104s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 105s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 105s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 105s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 105s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2ubuntu2 [338 kB] 105s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 105s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 105s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 105s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 105s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 105s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 105s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 105s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 105s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.2-1 [15.8 kB] 105s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 105s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 105s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 105s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 105s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 105s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 libopenmpi3t64 arm64 5.0.5-6 [2041 kB] 105s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi1.83.0 arm64 1.83.0-3.2ubuntu2 [269 kB] 105s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 105s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 105s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 prime-phylo arm64 1.0.11-12 [790 kB] 106s Fetched 58.2 MB in 2s (28.9 MB/s) 106s Selecting previously unselected package libllvm17t64:arm64. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79971 files and directories currently installed.) 106s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 106s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 107s Selecting previously unselected package libamd-comgr2:arm64. 107s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 107s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 107s Selecting previously unselected package libdrm-amdgpu1:arm64. 107s Preparing to unpack .../02-libdrm-amdgpu1_2.4.123-1_arm64.deb ... 107s Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ... 107s Selecting previously unselected package libhsakmt1:arm64. 107s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_arm64.deb ... 107s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 107s Selecting previously unselected package libhsa-runtime64-1. 107s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 107s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 107s Selecting previously unselected package libamdhip64-5. 107s Preparing to unpack .../05-libamdhip64-5_5.7.1-5_arm64.deb ... 107s Unpacking libamdhip64-5 (5.7.1-5) ... 107s Selecting previously unselected package libblas3:arm64. 107s Preparing to unpack .../06-libblas3_3.12.0-3build2_arm64.deb ... 107s Unpacking libblas3:arm64 (3.12.0-3build2) ... 107s Selecting previously unselected package libboost-serialization1.83.0:arm64. 107s Preparing to unpack .../07-libboost-serialization1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 107s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 107s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 107s Preparing to unpack .../08-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 107s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 107s Selecting previously unselected package librdmacm1t64:arm64. 107s Preparing to unpack .../09-librdmacm1t64_52.0-2ubuntu1_arm64.deb ... 107s Unpacking librdmacm1t64:arm64 (52.0-2ubuntu1) ... 107s Selecting previously unselected package libfabric1:arm64. 107s Preparing to unpack .../10-libfabric1_1.17.0-3ubuntu1_arm64.deb ... 107s Unpacking libfabric1:arm64 (1.17.0-3ubuntu1) ... 107s Selecting previously unselected package libhwloc15:arm64. 107s Preparing to unpack .../11-libhwloc15_2.11.2-1_arm64.deb ... 107s Unpacking libhwloc15:arm64 (2.11.2-1) ... 107s Selecting previously unselected package libmunge2:arm64. 107s Preparing to unpack .../12-libmunge2_0.5.15-4build1_arm64.deb ... 107s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 107s Selecting previously unselected package libpciaccess0:arm64. 107s Preparing to unpack .../13-libpciaccess0_0.17-3build1_arm64.deb ... 107s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 107s Selecting previously unselected package libxnvctrl0:arm64. 107s Preparing to unpack .../14-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 107s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 107s Selecting previously unselected package ocl-icd-libopencl1:arm64. 107s Preparing to unpack .../15-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 107s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 107s Selecting previously unselected package libhwloc-plugins:arm64. 107s Preparing to unpack .../16-libhwloc-plugins_2.11.2-1_arm64.deb ... 107s Unpacking libhwloc-plugins:arm64 (2.11.2-1) ... 107s Selecting previously unselected package libpmix2t64:arm64. 107s Preparing to unpack .../17-libpmix2t64_5.0.3-2_arm64.deb ... 107s Unpacking libpmix2t64:arm64 (5.0.3-2) ... 107s Selecting previously unselected package libgomp1:arm64. 108s Preparing to unpack .../18-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 108s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 108s Selecting previously unselected package libibumad3:arm64. 108s Preparing to unpack .../19-libibumad3_52.0-2ubuntu1_arm64.deb ... 108s Unpacking libibumad3:arm64 (52.0-2ubuntu1) ... 108s Selecting previously unselected package libibmad5:arm64. 108s Preparing to unpack .../20-libibmad5_52.0-2ubuntu1_arm64.deb ... 108s Unpacking libibmad5:arm64 (52.0-2ubuntu1) ... 108s Selecting previously unselected package libucx0:arm64. 108s Preparing to unpack .../21-libucx0_1.17.0+ds-3build1_arm64.deb ... 108s Unpacking libucx0:arm64 (1.17.0+ds-3build1) ... 108s Selecting previously unselected package libopenmpi3t64:arm64. 108s Preparing to unpack .../22-libopenmpi3t64_5.0.5-6_arm64.deb ... 108s Unpacking libopenmpi3t64:arm64 (5.0.5-6) ... 108s Selecting previously unselected package libboost-mpi1.83.0. 108s Preparing to unpack .../23-libboost-mpi1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 108s Unpacking libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 108s Selecting previously unselected package libgfortran5:arm64. 108s Preparing to unpack .../24-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 108s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 108s Selecting previously unselected package liblapack3:arm64. 108s Preparing to unpack .../25-liblapack3_3.12.0-3build2_arm64.deb ... 108s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 108s Selecting previously unselected package prime-phylo. 108s Preparing to unpack .../26-prime-phylo_1.0.11-12_arm64.deb ... 108s Unpacking prime-phylo (1.0.11-12) ... 108s Selecting previously unselected package autopkgtest-satdep. 108s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 108s Unpacking autopkgtest-satdep (0) ... 108s Setting up libpciaccess0:arm64 (0.17-3build1) ... 108s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 108s Setting up libibumad3:arm64 (52.0-2ubuntu1) ... 108s Setting up libibmad5:arm64 (52.0-2ubuntu1) ... 108s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 108s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 108s Setting up libboost-serialization1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 108s Setting up libblas3:arm64 (3.12.0-3build2) ... 108s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 108s Setting up libmunge2:arm64 (0.5.15-4build1) ... 108s Setting up libllvm17t64:arm64 (1:17.0.6-18) ... 108s Setting up libhwloc15:arm64 (2.11.2-1) ... 108s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 108s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 108s Setting up librdmacm1t64:arm64 (52.0-2ubuntu1) ... 108s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 108s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... 108s Setting up libfabric1:arm64 (1.17.0-3ubuntu1) ... 108s Setting up liblapack3:arm64 (3.12.0-3build2) ... 108s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 108s Setting up libhwloc-plugins:arm64 (2.11.2-1) ... 108s Setting up libpmix2t64:arm64 (5.0.3-2) ... 108s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 108s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 108s Setting up libamdhip64-5 (5.7.1-5) ... 108s Setting up libucx0:arm64 (1.17.0+ds-3build1) ... 108s Setting up libopenmpi3t64:arm64 (5.0.5-6) ... 108s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 108s Setting up prime-phylo (1.0.11-12) ... 108s Setting up autopkgtest-satdep (0) ... 108s Processing triggers for man-db (2.13.0-1) ... 108s Processing triggers for libc-bin (2.40-1ubuntu3) ... 112s (Reading database ... 80249 files and directories currently installed.) 112s Removing autopkgtest-satdep (0) ... 113s autopkgtest [19:56:53]: test run-unit-test: [----------------------- 113s treesize: error while loading shared libraries: libmpi_cxx.so.40: cannot open shared object file: No such file or directory 113s autopkgtest [19:56:53]: test run-unit-test: -----------------------] 114s autopkgtest [19:56:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 114s run-unit-test FAIL non-zero exit status 127 114s autopkgtest [19:56:54]: @@@@@@@@@@@@@@@@@@@@ summary 114s run-unit-test FAIL non-zero exit status 127 126s nova [W] Skipping flock in bos03-arm64 126s Creating nova instance adt-plucky-arm64-prime-phylo-20241116-195500-juju-7f2275-prod-proposed-migration-environment-15-c02e18a0-618a-42d6-942a-60edfda64e21 from image adt/ubuntu-plucky-arm64-server-20241116.img (UUID b01758a6-21f8-4caa-9834-062ee0544e32)...