0s autopkgtest [14:18:48]: starting date and time: 2025-03-15 14:18:48+0000 0s autopkgtest [14:18:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:18:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._5be7ign/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade phipack --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-24.secgroup --name adt-plucky-arm64-phipack-20250315-141848-juju-7f2275-prod-proposed-migration-environment-15-8995a08d-9196-4fe0-8480-5fbaf66ca9b4 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 173s autopkgtest [14:21:41]: testbed dpkg architecture: arm64 173s autopkgtest [14:21:41]: testbed apt version: 2.9.33 173s autopkgtest [14:21:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 173s autopkgtest [14:21:41]: testbed release detected to be: None 174s autopkgtest [14:21:42]: updating testbed package index (apt update) 175s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 175s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 175s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 175s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 175s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 175s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 176s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 176s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 176s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 176s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 176s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 176s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 176s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 176s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 176s Fetched 1094 kB in 2s (695 kB/s) 177s Reading package lists... 178s + lsb_release --codename --short 178s + RELEASE=plucky 178s + cat 178s + [ plucky != trusty ] 178s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Calculating upgrade... 179s Calculating upgrade... 180s The following packages will be upgraded: 180s python3-jinja2 strace 180s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 608 kB of archives. 180s After this operation, 11.3 kB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 181s Fetched 608 kB in 1s (713 kB/s) 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 181s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 181s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 181s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 182s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 182s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 182s Setting up strace (6.13+ds-1ubuntu1) ... 182s Processing triggers for man-db (2.13.0-1) ... 183s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 183s + /usr/lib/apt/apt-helper analyze-pattern ?true 183s + uname -r 183s + sed s/\./\\./g 183s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 183s + tail -n+2 183s + apt list ?obsolete 183s + cut -d/ -f1 183s + grep -v ^linux-.*6\.14\.0-10-generic.* 183s + obsolete_pkgs=linux-headers-6.11.0-8-generic 183s linux-headers-6.11.0-8 183s linux-image-6.11.0-8-generic 183s linux-modules-6.11.0-8-generic 183s linux-tools-6.11.0-8-generic 183s linux-tools-6.11.0-8 183s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 183s Reading package lists... 184s Building dependency tree... 184s Reading state information... 185s Solving dependencies... 186s The following packages will be REMOVED: 186s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 186s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 186s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 186s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 186s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 186s After this operation, 267 MB disk space will be freed. 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 186s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 186s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 186s Removing libpython3.12t64:arm64 (3.12.9-1) ... 186s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 186s Removing libnsl2:arm64 (1.3.0-3build3) ... 186s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 187s Removing libunwind8:arm64 (1.6.2-3.1) ... 187s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 187s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 188s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 189s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 189s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 189s /etc/kernel/postrm.d/initramfs-tools: 189s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 189s /etc/kernel/postrm.d/zz-flash-kernel: 189s flash-kernel: Kernel 6.11.0-8-generic has been removed. 189s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 189s /etc/kernel/postrm.d/zz-update-grub: 189s Sourcing file `/etc/default/grub' 189s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 189s Generating grub configuration file ... 189s Found linux image: /boot/vmlinuz-6.14.0-10-generic 189s Found initrd image: /boot/initrd.img-6.14.0-10-generic 190s Warning: os-prober will not be executed to detect other bootable partitions. 190s Systems on them will not be added to the GRUB boot configuration. 190s Check GRUB_DISABLE_OS_PROBER documentation entry. 190s Adding boot menu entry for UEFI Firmware Settings ... 190s done 190s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 190s Processing triggers for libc-bin (2.41-1ubuntu1) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 190s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 190s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 191s + grep -q trusty /etc/lsb-release 191s + [ ! -d /usr/share/doc/unattended-upgrades ] 191s + [ ! -d /usr/share/doc/lxd ] 191s + [ ! -d /usr/share/doc/lxd-client ] 191s + [ ! -d /usr/share/doc/snapd ] 191s + type iptables 191s + cat 191s + chmod 755 /etc/rc.local 191s + . /etc/rc.local 191s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 191s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 191s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 191s + uname -m 191s + [ aarch64 = ppc64le ] 191s + [ -d /run/systemd/system ] 191s + systemd-detect-virt --quiet --vm 191s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 191s + cat 191s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 191s + echo COMPRESS=lz4 191s autopkgtest [14:21:59]: upgrading testbed (apt dist-upgrade and autopurge) 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 192s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 195s Entering ResolveByKeep 195s 195s Calculating upgrade... 196s The following packages will be upgraded: 196s libc-bin libc-dev-bin libc6 libc6-dev locales 196s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 9530 kB of archives. 196s After this operation, 0 B of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 201s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 202s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 207s Preconfiguring packages ... 207s Fetched 9530 kB in 10s (923 kB/s) 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 207s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 207s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 207s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 207s Setting up libc6:arm64 (2.41-1ubuntu2) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 208s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 208s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 208s Setting up libc-bin (2.41-1ubuntu2) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 208s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 208s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 208s Setting up locales (2.41-1ubuntu2) ... 209s Generating locales (this might take a while)... 210s en_US.UTF-8... done 210s Generation complete. 211s Setting up libc-dev-bin (2.41-1ubuntu2) ... 211s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 211s Processing triggers for man-db (2.13.0-1) ... 211s Processing triggers for systemd (257.3-1ubuntu3) ... 212s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 213s Solving dependencies... 214s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 214s autopkgtest [14:22:22]: rebooting testbed after setup commands that affected boot 237s autopkgtest [14:22:45]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 240s autopkgtest [14:22:48]: @@@@@@@@@@@@@@@@@@@@ apt-source phipack 242s Get:1 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (dsc) [2021 B] 242s Get:2 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (tar) [54.2 kB] 242s Get:3 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (diff) [6792 B] 242s gpgv: Signature made Wed Sep 9 06:32:48 2020 UTC 242s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 242s gpgv: issuer "tille@debian.org" 242s gpgv: Can't check signature: No public key 242s dpkg-source: warning: cannot verify inline signature for ./phipack_0.0.20160614-5.dsc: no acceptable signature found 243s autopkgtest [14:22:51]: testing package phipack version 0.0.20160614-5 243s autopkgtest [14:22:51]: build not needed 244s autopkgtest [14:22:52]: test run-unit-test: preparing testbed 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 245s Starting pkgProblemResolver with broken count: 0 245s Starting 2 pkgProblemResolver with broken count: 0 245s Done 245s The following NEW packages will be installed: 245s phipack 245s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 245s Need to get 49.9 kB of archives. 245s After this operation, 242 kB of additional disk space will be used. 245s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 phipack arm64 0.0.20160614-5 [49.9 kB] 246s Fetched 49.9 kB in 0s (164 kB/s) 246s Selecting previously unselected package phipack. 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 246s Preparing to unpack .../phipack_0.0.20160614-5_arm64.deb ... 246s Unpacking phipack (0.0.20160614-5) ... 246s Setting up phipack (0.0.20160614-5) ... 246s Processing triggers for man-db (2.13.0-1) ... 249s autopkgtest [14:22:56]: test run-unit-test: [----------------------- 249s Run test for functionality ... 249s Reading sequence file noro.fasta 249s Found 25 sequences of length 1617 249s Alignment looks like a valid DNA alignment. 249s Estimated diversity is (pairwise deletion - ignoring missing/ambig): 2.2% 249s Found 103 informative sites. 249s Writing alignment of informative sites to: Phi.inf.sites 249s Writing list of informative sites to: Phi.inf.list 249s Calculating all pairwise incompatibilities... 249s Done: 0.0% 99.9%100.0% 249s 249s Using a window size of 100 with k as 6 249s 249s Calculating analytical mean and variance 249s 249s Outputting incompatibility matrix to file matrix.ppm 249s 249s **p-Value(s)** 249s ---------- 249s 249s PHI (Normal): 2.32e-03 249s 249s Reading sequence file rana.fasta 249s Found 8 sequences of length 1143 249s Alignment looks like a valid OTHER alignment. 249s 249s PHI is calculated with w as 100 249s 249s Checking for recombination using a window size of 1000 and a step size of 25 249s 249s Checking for recombination at 500 between 0 and 1000 249s PHI (Normal): 6.18e-13 249s Checking for recombination at 525 between 25 and 1025 249s PHI (Normal): 1.38e-14 249s Checking for recombination at 550 between 50 and 1050 249s PHI (Normal): 6.66e-18 249s Checking for recombination at 575 between 75 and 1075 249s PHI (Normal): 6.42e-20 249s Checking for recombination at 600 between 100 and 1100 249s PHI (Normal): 7.36e-24 249s Checking for recombination at 625 between 125 and 1125 249s PHI (Normal): 2.15e-28 249s Number of tests performed is 6 249s 249s 249s 15 March 2025 02:22:57 PM 249s 249s PPMA_2_BMP: 249s 249s Compiled on Sep 9 2020 at 06:30:55. 249s 249s Convert a NetPBM ASCII PPM file to Microsoft BMP format. 249s 249s PPMA_2_BMP: 249s XSIZE = 685. 249s YSIZE = 685. 249s 249s PPMA_2_BMP: 249s Flipping data orientation. 249s 249s PPMA_2_BMP: 249s Normal end of translation. 249s 249s PPMA_2_BMP: 249s Normal end of execution. 249s 249s 15 March 2025 02:22:57 PM 249s PASS 249s autopkgtest [14:22:57]: test run-unit-test: -----------------------] 250s autopkgtest [14:22:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 250s run-unit-test PASS 250s autopkgtest [14:22:58]: @@@@@@@@@@@@@@@@@@@@ summary 250s run-unit-test PASS 259s nova [W] Using flock in prodstack6-arm64 259s Creating nova instance adt-plucky-arm64-phipack-20250315-141848-juju-7f2275-prod-proposed-migration-environment-15-8995a08d-9196-4fe0-8480-5fbaf66ca9b4 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 259s nova [W] Timed out waiting for 6d86e31b-9f8c-4757-89f6-1b8953f5f094 to get deleted.