0s autopkgtest [14:11:35]: starting date and time: 2025-03-15 14:11:35+0000 0s autopkgtest [14:11:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:11:35]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0crwe12g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pbsim --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-29.secgroup --name adt-plucky-arm64-pbsim-20250315-141135-juju-7f2275-prod-proposed-migration-environment-15-9f5304bf-309e-48c2-a5e4-f1df21504cdb --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 140s autopkgtest [14:13:55]: testbed dpkg architecture: arm64 141s autopkgtest [14:13:56]: testbed apt version: 2.9.33 141s autopkgtest [14:13:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 141s autopkgtest [14:13:56]: testbed release detected to be: None 142s autopkgtest [14:13:57]: updating testbed package index (apt update) 142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 143s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 143s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 143s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 143s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 143s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 143s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 143s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 143s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 143s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 143s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 143s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 143s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 143s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 144s Fetched 1094 kB in 1s (838 kB/s) 145s Reading package lists... 145s + lsb_release --codename --short 145s + RELEASE=plucky 145s + cat 145s + [ plucky != trusty ] 145s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Calculating upgrade... 146s Calculating upgrade... 147s The following packages will be upgraded: 147s python3-jinja2 strace 147s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 608 kB of archives. 147s After this operation, 11.3 kB of additional disk space will be used. 147s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 148s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 148s Fetched 608 kB in 1s (729 kB/s) 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 149s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 149s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 149s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 149s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 149s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 149s Setting up strace (6.13+ds-1ubuntu1) ... 149s Processing triggers for man-db (2.13.0-1) ... 150s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 150s + /usr/lib/apt/apt-helper analyze-pattern ?true 150s + uname -r 150s + sed s/\./\\./g 150s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 150s + apt list ?obsolete 150s + tail -n+2 150s + + grep -v ^linux-.*6\.14\.0-10-generic.* 150s cut -d/ -f1 150s + obsolete_pkgs=linux-headers-6.11.0-8-generic 150s linux-headers-6.11.0-8 150s linux-image-6.11.0-8-generic 150s linux-modules-6.11.0-8-generic 150s linux-tools-6.11.0-8-generic 150s linux-tools-6.11.0-8 150s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 151s Solving dependencies... 151s The following packages will be REMOVED: 151s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 151s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 151s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 151s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 152s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 152s After this operation, 267 MB disk space will be freed. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 152s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 152s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 152s Removing libpython3.12t64:arm64 (3.12.9-1) ... 152s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 152s Removing libnsl2:arm64 (1.3.0-3build3) ... 152s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 152s Removing libunwind8:arm64 (1.6.2-3.1) ... 152s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 152s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 154s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 154s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 154s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 154s /etc/kernel/postrm.d/initramfs-tools: 154s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 154s /etc/kernel/postrm.d/zz-flash-kernel: 154s flash-kernel: Kernel 6.11.0-8-generic has been removed. 154s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Generating grub configuration file ... 155s Found linux image: /boot/vmlinuz-6.14.0-10-generic 155s Found initrd image: /boot/initrd.img-6.14.0-10-generic 155s Warning: os-prober will not be executed to detect other bootable partitions. 155s Systems on them will not be added to the GRUB boot configuration. 155s Check GRUB_DISABLE_OS_PROBER documentation entry. 155s Adding boot menu entry for UEFI Firmware Settings ... 155s done 155s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 155s Processing triggers for libc-bin (2.41-1ubuntu1) ... 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 156s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 156s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 156s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 156s + grep -q trusty /etc/lsb-release 156s + [ ! -d /usr/share/doc/unattended-upgrades ] 156s + [ ! -d /usr/share/doc/lxd ] 156s + [ ! -d /usr/share/doc/lxd-client ] 156s + [ ! -d /usr/share/doc/snapd ] 156s + type iptables 156s + cat 156s + chmod 755 /etc/rc.local 156s + . /etc/rc.local 156s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 156s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 156s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 156s + uname -m 156s + [ aarch64 = ppc64le ] 156s + [ -d /run/systemd/system ] 156s + systemd-detect-virt --quiet --vm 156s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 156s + cat 156s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 156s + echo COMPRESS=lz4 156s autopkgtest [14:14:11]: upgrading testbed (apt dist-upgrade and autopurge) 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 158s Entering ResolveByKeep 158s 158s Calculating upgrade... 159s The following packages will be upgraded: 159s libc-bin libc-dev-bin libc6 libc6-dev locales 159s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 9530 kB of archives. 159s After this operation, 0 B of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 162s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 162s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 165s Preconfiguring packages ... 165s Fetched 9530 kB in 6s (1618 kB/s) 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 165s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc6:arm64 (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc-bin (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 167s Setting up locales (2.41-1ubuntu2) ... 167s Generating locales (this might take a while)... 169s en_US.UTF-8... done 169s Generation complete. 169s Setting up libc-dev-bin (2.41-1ubuntu2) ... 169s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 169s Processing triggers for man-db (2.13.0-1) ... 170s Processing triggers for systemd (257.3-1ubuntu3) ... 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 173s Solving dependencies... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [14:14:28]: rebooting testbed after setup commands that affected boot 197s autopkgtest [14:14:52]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 200s autopkgtest [14:14:55]: @@@@@@@@@@@@@@@@@@@@ apt-source pbsim 207s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (dsc) [2138 B] 207s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (tar) [5305 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (diff) [80.2 kB] 207s gpgv: Signature made Wed Mar 1 06:56:30 2023 UTC 207s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 207s gpgv: issuer "tille@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found 207s autopkgtest [14:15:02]: testing package pbsim version 1.0.3+git20180330.e014b1d+dfsg-3 208s autopkgtest [14:15:03]: build not needed 209s autopkgtest [14:15:04]: test run: preparing testbed 209s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s Starting pkgProblemResolver with broken count: 0 210s Starting 2 pkgProblemResolver with broken count: 0 210s Done 211s The following NEW packages will be installed: 211s pbsim 211s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 25.5 kB of archives. 211s After this operation, 122 kB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 pbsim arm64 1.0.3+git20180330.e014b1d+dfsg-3 [25.5 kB] 212s Fetched 25.5 kB in 0s (108 kB/s) 212s Selecting previously unselected package pbsim. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 212s Preparing to unpack .../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb ... 212s Unpacking pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 212s Setting up pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 212s Processing triggers for man-db (2.13.0-1) ... 214s autopkgtest [14:15:09]: test run: [----------------------- 214s :::: Simulation parameters ::: 214s 214s Simulated by stochastic model. 214s 214s prefix : sd 214s data-type : CLR 214s depth : 20.000000 214s length-mean : 3000.000000 214s length-sd : 2300.000000 214s length-min : 100 214s length-max : 25000 214s accuracy-mean : 0.780000 214s accuracy-sd : 0.020000 214s accuracy-min : 0.750000 214s accuracy-max : 1.000000 214s difference-ratio : 10:60:30 214s 214s !! ref file /tmp/autopkgtest.dnS2Qa/build.yxT/src/sample/sample.fasta 214s :::: Reference stats :::: 214s 214s file name : /tmp/autopkgtest.dnS2Qa/build.yxT/src/sample/sample.fasta 214s 214s ref.1 (len:5154862) : sample 214s 223s run: OK 223s :::: Simulation stats (ref.1 - name: sample) :::: 223s 223s read num. : 34574 223s depth : 20.000000 223s read length mean (SD) : 2981.929774 (2246.579322) 223s read length min : 172 223s read length max : 24809 223s read accuracy mean (SD) : 0.781631 (0.018797) 223s substitution rate. : 0.021825 223s insertion rate. : 0.131125 223s deletion rate. : 0.065981 223s 223s :::: System utilization :::: 223s 223s CPU time(s) : 8 223s Elapsed time(s) : 9 223s autopkgtest [14:15:18]: test run: -----------------------] 224s run PASS 224s autopkgtest [14:15:19]: test run: - - - - - - - - - - results - - - - - - - - - - 224s autopkgtest [14:15:19]: @@@@@@@@@@@@@@@@@@@@ summary 224s run PASS 243s nova [W] Using flock in prodstack6-arm64 243s Creating nova instance adt-plucky-arm64-pbsim-20250315-141135-juju-7f2275-prod-proposed-migration-environment-15-9f5304bf-309e-48c2-a5e4-f1df21504cdb from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 243s nova [W] Timed out waiting for 66a11f4a-7947-4a3d-80b8-14341382cb01 to get deleted.