0s autopkgtest [14:11:19]: starting date and time: 2025-03-15 14:11:19+0000 0s autopkgtest [14:11:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:11:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bpufosis/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pbbam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-33.secgroup --name adt-plucky-arm64-pbbam-20250315-141118-juju-7f2275-prod-proposed-migration-environment-2-0720d007-901d-4b15-9a1f-482836a83c85 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 158s autopkgtest [14:13:57]: testbed dpkg architecture: arm64 158s autopkgtest [14:13:57]: testbed apt version: 2.9.33 159s autopkgtest [14:13:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 159s autopkgtest [14:13:58]: testbed release detected to be: None 160s autopkgtest [14:13:59]: updating testbed package index (apt update) 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 160s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 161s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 161s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 161s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 161s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 161s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 161s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 161s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 161s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 162s Fetched 1094 kB in 1s (816 kB/s) 163s Reading package lists... 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Calculating upgrade... 165s Calculating upgrade... 166s The following packages will be upgraded: 166s python3-jinja2 strace 166s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 608 kB of archives. 166s After this operation, 11.3 kB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 166s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 167s Fetched 608 kB in 1s (748 kB/s) 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 168s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 168s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 168s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 168s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 168s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 168s Setting up strace (6.13+ds-1ubuntu1) ... 168s Processing triggers for man-db (2.13.0-1) ... 169s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Solving dependencies... 171s The following packages will be REMOVED: 171s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 171s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 171s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 171s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 172s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 172s After this operation, 267 MB disk space will be freed. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 172s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 172s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 172s Removing libpython3.12t64:arm64 (3.12.9-1) ... 172s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 172s Removing libnsl2:arm64 (1.3.0-3build3) ... 172s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 172s Removing libunwind8:arm64 (1.6.2-3.1) ... 172s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 173s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 175s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 175s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 175s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 175s /etc/kernel/postrm.d/initramfs-tools: 175s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 175s /etc/kernel/postrm.d/zz-flash-kernel: 175s flash-kernel: Kernel 6.11.0-8-generic has been removed. 175s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 175s /etc/kernel/postrm.d/zz-update-grub: 175s Sourcing file `/etc/default/grub' 175s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 175s Generating grub configuration file ... 176s Found linux image: /boot/vmlinuz-6.14.0-10-generic 176s Found initrd image: /boot/initrd.img-6.14.0-10-generic 176s Warning: os-prober will not be executed to detect other bootable partitions. 176s Systems on them will not be added to the GRUB boot configuration. 176s Check GRUB_DISABLE_OS_PROBER documentation entry. 176s Adding boot menu entry for UEFI Firmware Settings ... 176s done 176s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 177s Processing triggers for libc-bin (2.41-1ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 177s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 177s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 177s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 177s autopkgtest [14:14:16]: upgrading testbed (apt dist-upgrade and autopurge) 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s Entering ResolveByKeep 180s 181s Calculating upgrade... 182s The following packages will be upgraded: 182s libc-bin libc-dev-bin libc6 libc6-dev locales 182s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Need to get 9530 kB of archives. 182s After this operation, 0 B of additional disk space will be used. 182s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 183s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 183s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 185s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 185s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 189s Preconfiguring packages ... 189s Fetched 9530 kB in 7s (1411 kB/s) 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 189s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 189s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 189s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 190s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 190s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 190s Setting up libc6:arm64 (2.41-1ubuntu2) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 190s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 190s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 190s Setting up libc-bin (2.41-1ubuntu2) ... 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 191s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 191s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 191s Setting up locales (2.41-1ubuntu2) ... 192s Generating locales (this might take a while)... 194s en_US.UTF-8... done 194s Generation complete. 194s Setting up libc-dev-bin (2.41-1ubuntu2) ... 194s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 194s Processing triggers for man-db (2.13.0-1) ... 195s Processing triggers for systemd (257.3-1ubuntu3) ... 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 198s Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 199s Solving dependencies... 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 200s autopkgtest [14:14:39]: rebooting testbed after setup commands that affected boot 223s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 231s autopkgtest [14:15:10]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 235s autopkgtest [14:15:14]: @@@@@@@@@@@@@@@@@@@@ apt-source pbbam 246s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pbbam 2.4.0+dfsg-1build2 (dsc) [2320 B] 246s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pbbam 2.4.0+dfsg-1build2 (tar) [7826 kB] 246s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pbbam 2.4.0+dfsg-1build2 (diff) [9100 B] 246s gpgv: Signature made Sun Apr 14 23:14:37 2024 UTC 246s gpgv: using RSA key AC0A4FF12611B6FCCF01C111393587D97D86500B 246s gpgv: Can't check signature: No public key 246s dpkg-source: warning: cannot verify inline signature for ./pbbam_2.4.0+dfsg-1build2.dsc: no acceptable signature found 247s autopkgtest [14:15:26]: testing package pbbam version 2.4.0+dfsg-1build2 247s autopkgtest [14:15:26]: build not needed 249s autopkgtest [14:15:28]: test command1: preparing testbed 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 251s The following NEW packages will be installed: 251s autoconf automake autopoint autotools-dev build-essential cmake cmake-data 251s comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 251s d-shlibs debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism 251s dwz g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 251s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext googletest 251s intltool-debian krb5-multidev libarchive-zip-perl libasan8 libboost-dev 251s libboost1.83-dev libbrotli-dev libbz2-dev libcc1-0 libcurl4-gnutls-dev 251s libdebhelper-perl libdeflate-dev libdeflate0 libevent-2.1-7t64 251s libfile-stripnondeterminism-perl libgcc-14-dev libgmp-dev libgmpxx4ldbl 251s libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgomp1 251s libgssrpc4t64 libgtest-dev libhts-dev libhts3t64 libhtscodecs2 libhwasan0 251s libidn2-dev libisl23 libitm1 libjsoncpp26 libkadm5clnt-mit12 251s libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev libldap-dev liblsan0 liblzma-dev 251s libmpc3 libnghttp2-dev libp11-kit-dev libpbbam2.4.0 libpbcopper-dev 251s libpbcopper2.3.0 libpkgconf3 libpsl-dev librhash1 librtmp-dev libssh2-1-dev 251s libssl-dev libstdc++-14-dev libtasn1-6-dev libtool libtsan2 libubsan1 251s libunbound8 libzstd-dev m4 meson nettle-dev ninja-build pbbamtools 251s pkg-config pkgconf pkgconf-bin po-debconf python3-cram samtools zlib1g-dev 251s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 251s Need to get 111 MB of archives. 251s After this operation, 511 MB of additional disk space will be used. 251s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-7 [244 kB] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 252s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 252s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.23.1-1 [619 kB] 253s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 253s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 253s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 261s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 261s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 261s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 261s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 261s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 261s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 261s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 264s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 265s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 268s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 269s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 270s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 273s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 293s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 293s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 293s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 293s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 296s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 305s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 305s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 305s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 305s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 305s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake-data all 3.31.6-1ubuntu1 [2294 kB] 307s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 307s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 librhash1 arm64 1.4.5-1 [128 kB] 307s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake arm64 3.31.6-1ubuntu1 [11.4 MB] 314s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 d-shlibs all 0.109 [11.4 kB] 314s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 314s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.5.4-4 [168 kB] 315s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 315s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 315s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 315s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 315s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-2 [46.1 kB] 315s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 315s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.23.1-1 [998 kB] 316s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 316s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 316s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.24.1ubuntu2 [895 kB] 316s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 googletest all 1.16.0-1 [526 kB] 317s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 comerr-dev arm64 2.1-1.47.2-1ubuntu1 [45.1 kB] 317s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgssrpc4t64 arm64 1.21.3-4ubuntu2 [58.5 kB] 317s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4ubuntu2 [40.3 kB] 317s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libkdb5-10t64 arm64 1.21.3-4ubuntu2 [40.9 kB] 317s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5srv-mit12 arm64 1.21.3-4ubuntu2 [53.8 kB] 317s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 krb5-multidev arm64 1.21.3-4ubuntu2 [125 kB] 317s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 324s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 324s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build4 [359 kB] 324s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 324s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 325s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.22.0-1ubuntu1 [437 kB] 325s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 325s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 325s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 325s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu3 [23.5 kB] 325s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [91.1 kB] 325s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3ubuntu1 [10.1 kB] 325s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3ubuntu1 [335 kB] 325s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10.1-1 [1190 kB] 326s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.9-2ubuntu2 [1143 kB] 327s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libkrb5-dev arm64 1.21.3-4ubuntu2 [11.9 kB] 327s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libldap-dev arm64 2.6.9+dfsg-1~exp2ubuntu1 [318 kB] 327s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 327s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 327s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 327s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 327s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 327s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 328s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 328s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.4.1-1ubuntu1 [3287 kB] 330s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 330s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [353 kB] 330s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-gnutls-dev arm64 8.12.1-3ubuntu1 [502 kB] 330s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 330s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 330s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgtest-dev arm64 1.16.0-1 [272 kB] 331s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 331s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 331s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 331s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts-dev arm64 1.21+ds-1 [6019 kB] 335s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpbcopper2.3.0 arm64 2.3.0+dfsg-2 [516 kB] 336s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpbbam2.4.0 arm64 2.4.0+dfsg-1build2 [634 kB] 336s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpbcopper-dev arm64 2.3.0+dfsg-2 [1089 kB] 337s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 ninja-build arm64 1.12.1-1 [143 kB] 337s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 meson all 1.7.0-1ubuntu1 [645 kB] 337s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 pbbamtools arm64 2.4.0+dfsg-1build2 [104 kB] 337s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 pkg-config arm64 1.8.1-4 [7362 B] 337s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cram all 0.7-6 [17.8 kB] 337s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 samtools arm64 1.21-1 [609 kB] 338s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-exec arm64 0.30 [25.6 kB] 338s Fetched 111 MB in 1min 26s (1287 kB/s) 338s Selecting previously unselected package m4. 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 339s Preparing to unpack .../00-m4_1.4.19-7_arm64.deb ... 339s Unpacking m4 (1.4.19-7) ... 339s Selecting previously unselected package autoconf. 339s Preparing to unpack .../01-autoconf_2.72-3ubuntu1_all.deb ... 339s Unpacking autoconf (2.72-3ubuntu1) ... 339s Selecting previously unselected package autotools-dev. 339s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 339s Unpacking autotools-dev (20220109.1) ... 339s Selecting previously unselected package automake. 339s Preparing to unpack .../03-automake_1%3a1.17-3ubuntu1_all.deb ... 339s Unpacking automake (1:1.17-3ubuntu1) ... 339s Selecting previously unselected package autopoint. 339s Preparing to unpack .../04-autopoint_0.23.1-1_all.deb ... 339s Unpacking autopoint (0.23.1-1) ... 339s Selecting previously unselected package libisl23:arm64. 339s Preparing to unpack .../05-libisl23_0.27-1_arm64.deb ... 339s Unpacking libisl23:arm64 (0.27-1) ... 339s Selecting previously unselected package libmpc3:arm64. 339s Preparing to unpack .../06-libmpc3_1.3.1-1build2_arm64.deb ... 339s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 339s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 339s Preparing to unpack .../07-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 339s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 339s Selecting previously unselected package cpp-14. 339s Preparing to unpack .../08-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 339s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 339s Selecting previously unselected package cpp-aarch64-linux-gnu. 339s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 339s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 340s Selecting previously unselected package cpp. 340s Preparing to unpack .../10-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 340s Unpacking cpp (4:14.2.0-1ubuntu1) ... 340s Selecting previously unselected package libcc1-0:arm64. 340s Preparing to unpack .../11-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libgomp1:arm64. 340s Preparing to unpack .../12-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libitm1:arm64. 340s Preparing to unpack .../13-libitm1_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libasan8:arm64. 340s Preparing to unpack .../14-libasan8_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package liblsan0:arm64. 340s Preparing to unpack .../15-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libtsan2:arm64. 340s Preparing to unpack .../16-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libubsan1:arm64. 340s Preparing to unpack .../17-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libhwasan0:arm64. 340s Preparing to unpack .../18-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 340s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 340s Selecting previously unselected package libgcc-14-dev:arm64. 340s Preparing to unpack .../19-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 340s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 340s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 340s Preparing to unpack .../20-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 340s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 341s Selecting previously unselected package gcc-14. 341s Preparing to unpack .../21-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 341s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 341s Selecting previously unselected package gcc-aarch64-linux-gnu. 341s Preparing to unpack .../22-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 341s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 341s Selecting previously unselected package gcc. 341s Preparing to unpack .../23-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 341s Unpacking gcc (4:14.2.0-1ubuntu1) ... 341s Selecting previously unselected package libstdc++-14-dev:arm64. 341s Preparing to unpack .../24-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 341s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 342s Selecting previously unselected package g++-14-aarch64-linux-gnu. 342s Preparing to unpack .../25-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 342s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 342s Selecting previously unselected package g++-14. 342s Preparing to unpack .../26-g++-14_14.2.0-17ubuntu3_arm64.deb ... 342s Unpacking g++-14 (14.2.0-17ubuntu3) ... 342s Selecting previously unselected package g++-aarch64-linux-gnu. 342s Preparing to unpack .../27-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 342s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 342s Selecting previously unselected package g++. 342s Preparing to unpack .../28-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 342s Unpacking g++ (4:14.2.0-1ubuntu1) ... 342s Selecting previously unselected package build-essential. 342s Preparing to unpack .../29-build-essential_12.10ubuntu1_arm64.deb ... 342s Unpacking build-essential (12.10ubuntu1) ... 342s Selecting previously unselected package cmake-data. 342s Preparing to unpack .../30-cmake-data_3.31.6-1ubuntu1_all.deb ... 342s Unpacking cmake-data (3.31.6-1ubuntu1) ... 343s Selecting previously unselected package libjsoncpp26:arm64. 343s Preparing to unpack .../31-libjsoncpp26_1.9.6-3_arm64.deb ... 343s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 343s Selecting previously unselected package librhash1:arm64. 343s Preparing to unpack .../32-librhash1_1.4.5-1_arm64.deb ... 343s Unpacking librhash1:arm64 (1.4.5-1) ... 343s Selecting previously unselected package cmake. 343s Preparing to unpack .../33-cmake_3.31.6-1ubuntu1_arm64.deb ... 343s Unpacking cmake (3.31.6-1ubuntu1) ... 343s Selecting previously unselected package d-shlibs. 343s Preparing to unpack .../34-d-shlibs_0.109_all.deb ... 343s Unpacking d-shlibs (0.109) ... 343s Selecting previously unselected package libdebhelper-perl. 343s Preparing to unpack .../35-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 343s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 343s Selecting previously unselected package libtool. 343s Preparing to unpack .../36-libtool_2.5.4-4_all.deb ... 343s Unpacking libtool (2.5.4-4) ... 343s Selecting previously unselected package dh-autoreconf. 343s Preparing to unpack .../37-dh-autoreconf_20_all.deb ... 343s Unpacking dh-autoreconf (20) ... 343s Selecting previously unselected package libarchive-zip-perl. 343s Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... 343s Unpacking libarchive-zip-perl (1.68-1) ... 344s Selecting previously unselected package libfile-stripnondeterminism-perl. 344s Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 344s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 344s Selecting previously unselected package dh-strip-nondeterminism. 344s Preparing to unpack .../40-dh-strip-nondeterminism_1.14.1-2_all.deb ... 344s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 344s Selecting previously unselected package debugedit. 344s Preparing to unpack .../41-debugedit_1%3a5.1-2_arm64.deb ... 344s Unpacking debugedit (1:5.1-2) ... 344s Selecting previously unselected package dwz. 344s Preparing to unpack .../42-dwz_0.15-1build6_arm64.deb ... 344s Unpacking dwz (0.15-1build6) ... 344s Selecting previously unselected package gettext. 344s Preparing to unpack .../43-gettext_0.23.1-1_arm64.deb ... 344s Unpacking gettext (0.23.1-1) ... 344s Selecting previously unselected package intltool-debian. 344s Preparing to unpack .../44-intltool-debian_0.35.0+20060710.6_all.deb ... 344s Unpacking intltool-debian (0.35.0+20060710.6) ... 344s Selecting previously unselected package po-debconf. 344s Preparing to unpack .../45-po-debconf_1.0.21+nmu1_all.deb ... 344s Unpacking po-debconf (1.0.21+nmu1) ... 344s Selecting previously unselected package debhelper. 344s Preparing to unpack .../46-debhelper_13.24.1ubuntu2_all.deb ... 344s Unpacking debhelper (13.24.1ubuntu2) ... 344s Selecting previously unselected package googletest. 344s Preparing to unpack .../47-googletest_1.16.0-1_all.deb ... 344s Unpacking googletest (1.16.0-1) ... 344s Selecting previously unselected package comerr-dev:arm64. 344s Preparing to unpack .../48-comerr-dev_2.1-1.47.2-1ubuntu1_arm64.deb ... 344s Unpacking comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ... 344s Selecting previously unselected package libgssrpc4t64:arm64. 344s Preparing to unpack .../49-libgssrpc4t64_1.21.3-4ubuntu2_arm64.deb ... 344s Unpacking libgssrpc4t64:arm64 (1.21.3-4ubuntu2) ... 344s Selecting previously unselected package libkadm5clnt-mit12:arm64. 344s Preparing to unpack .../50-libkadm5clnt-mit12_1.21.3-4ubuntu2_arm64.deb ... 344s Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu2) ... 345s Selecting previously unselected package libkdb5-10t64:arm64. 345s Preparing to unpack .../51-libkdb5-10t64_1.21.3-4ubuntu2_arm64.deb ... 345s Unpacking libkdb5-10t64:arm64 (1.21.3-4ubuntu2) ... 345s Selecting previously unselected package libkadm5srv-mit12:arm64. 345s Preparing to unpack .../52-libkadm5srv-mit12_1.21.3-4ubuntu2_arm64.deb ... 345s Unpacking libkadm5srv-mit12:arm64 (1.21.3-4ubuntu2) ... 345s Selecting previously unselected package krb5-multidev:arm64. 345s Preparing to unpack .../53-krb5-multidev_1.21.3-4ubuntu2_arm64.deb ... 345s Unpacking krb5-multidev:arm64 (1.21.3-4ubuntu2) ... 345s Selecting previously unselected package libboost1.83-dev:arm64. 345s Preparing to unpack .../54-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 345s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 347s Selecting previously unselected package libboost-dev:arm64. 347s Preparing to unpack .../55-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 347s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 347s Selecting previously unselected package libbrotli-dev:arm64. 347s Preparing to unpack .../56-libbrotli-dev_1.1.0-2build4_arm64.deb ... 347s Unpacking libbrotli-dev:arm64 (1.1.0-2build4) ... 347s Selecting previously unselected package libbz2-dev:arm64. 347s Preparing to unpack .../57-libbz2-dev_1.0.8-6_arm64.deb ... 347s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 348s Selecting previously unselected package libevent-2.1-7t64:arm64. 348s Preparing to unpack .../58-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 348s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 348s Selecting previously unselected package libunbound8:arm64. 348s Preparing to unpack .../59-libunbound8_1.22.0-1ubuntu1_arm64.deb ... 348s Unpacking libunbound8:arm64 (1.22.0-1ubuntu1) ... 348s Selecting previously unselected package libgnutls-dane0t64:arm64. 348s Preparing to unpack .../60-libgnutls-dane0t64_3.8.9-2ubuntu2_arm64.deb ... 348s Unpacking libgnutls-dane0t64:arm64 (3.8.9-2ubuntu2) ... 348s Selecting previously unselected package libgnutls-openssl27t64:arm64. 348s Preparing to unpack .../61-libgnutls-openssl27t64_3.8.9-2ubuntu2_arm64.deb ... 348s Unpacking libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu2) ... 348s Selecting previously unselected package libidn2-dev:arm64. 348s Preparing to unpack .../62-libidn2-dev_2.3.7-2build2_arm64.deb ... 348s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 348s Selecting previously unselected package libp11-kit-dev:arm64. 348s Preparing to unpack .../63-libp11-kit-dev_0.25.5-2ubuntu3_arm64.deb ... 348s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ... 348s Selecting previously unselected package libtasn1-6-dev:arm64. 348s Preparing to unpack .../64-libtasn1-6-dev_4.20.0-2_arm64.deb ... 348s Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ... 348s Selecting previously unselected package libgmpxx4ldbl:arm64. 348s Preparing to unpack .../65-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_arm64.deb ... 348s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 348s Selecting previously unselected package libgmp-dev:arm64. 348s Preparing to unpack .../66-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_arm64.deb ... 348s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 348s Selecting previously unselected package nettle-dev:arm64. 348s Preparing to unpack .../67-nettle-dev_3.10.1-1_arm64.deb ... 348s Unpacking nettle-dev:arm64 (3.10.1-1) ... 348s Selecting previously unselected package libgnutls28-dev:arm64. 348s Preparing to unpack .../68-libgnutls28-dev_3.8.9-2ubuntu2_arm64.deb ... 348s Unpacking libgnutls28-dev:arm64 (3.8.9-2ubuntu2) ... 348s Selecting previously unselected package libkrb5-dev:arm64. 348s Preparing to unpack .../69-libkrb5-dev_1.21.3-4ubuntu2_arm64.deb ... 348s Unpacking libkrb5-dev:arm64 (1.21.3-4ubuntu2) ... 348s Selecting previously unselected package libldap-dev:arm64. 348s Preparing to unpack .../70-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_arm64.deb ... 348s Unpacking libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ... 349s Selecting previously unselected package libpkgconf3:arm64. 349s Preparing to unpack .../71-libpkgconf3_1.8.1-4_arm64.deb ... 349s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 349s Selecting previously unselected package pkgconf-bin. 349s Preparing to unpack .../72-pkgconf-bin_1.8.1-4_arm64.deb ... 349s Unpacking pkgconf-bin (1.8.1-4) ... 349s Selecting previously unselected package pkgconf:arm64. 349s Preparing to unpack .../73-pkgconf_1.8.1-4_arm64.deb ... 349s Unpacking pkgconf:arm64 (1.8.1-4) ... 349s Selecting previously unselected package libnghttp2-dev:arm64. 349s Preparing to unpack .../74-libnghttp2-dev_1.64.0-1_arm64.deb ... 349s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 349s Selecting previously unselected package libpsl-dev:arm64. 349s Preparing to unpack .../75-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 349s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 349s Selecting previously unselected package zlib1g-dev:arm64. 349s Preparing to unpack .../76-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 349s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 349s Selecting previously unselected package librtmp-dev:arm64. 349s Preparing to unpack .../77-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 349s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 349s Selecting previously unselected package libssl-dev:arm64. 349s Preparing to unpack .../78-libssl-dev_3.4.1-1ubuntu1_arm64.deb ... 349s Unpacking libssl-dev:arm64 (3.4.1-1ubuntu1) ... 349s Selecting previously unselected package libssh2-1-dev:arm64. 349s Preparing to unpack .../79-libssh2-1-dev_1.11.1-1_arm64.deb ... 349s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 349s Selecting previously unselected package libzstd-dev:arm64. 349s Preparing to unpack .../80-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... 349s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... 349s Selecting previously unselected package libcurl4-gnutls-dev:arm64. 349s Preparing to unpack .../81-libcurl4-gnutls-dev_8.12.1-3ubuntu1_arm64.deb ... 349s Unpacking libcurl4-gnutls-dev:arm64 (8.12.1-3ubuntu1) ... 349s Selecting previously unselected package libdeflate0:arm64. 349s Preparing to unpack .../82-libdeflate0_1.23-1_arm64.deb ... 349s Unpacking libdeflate0:arm64 (1.23-1) ... 350s Selecting previously unselected package libdeflate-dev:arm64. 350s Preparing to unpack .../83-libdeflate-dev_1.23-1_arm64.deb ... 350s Unpacking libdeflate-dev:arm64 (1.23-1) ... 350s Selecting previously unselected package libgtest-dev:arm64. 350s Preparing to unpack .../84-libgtest-dev_1.16.0-1_arm64.deb ... 350s Unpacking libgtest-dev:arm64 (1.16.0-1) ... 350s Selecting previously unselected package libhtscodecs2:arm64. 350s Preparing to unpack .../85-libhtscodecs2_1.6.1-2_arm64.deb ... 350s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 350s Selecting previously unselected package libhts3t64:arm64. 350s Preparing to unpack .../86-libhts3t64_1.21+ds-1_arm64.deb ... 350s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 350s Selecting previously unselected package liblzma-dev:arm64. 350s Preparing to unpack .../87-liblzma-dev_5.6.4-1_arm64.deb ... 350s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 350s Selecting previously unselected package libhts-dev:arm64. 350s Preparing to unpack .../88-libhts-dev_1.21+ds-1_arm64.deb ... 350s Unpacking libhts-dev:arm64 (1.21+ds-1) ... 350s Selecting previously unselected package libpbcopper2.3.0:arm64. 350s Preparing to unpack .../89-libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb ... 350s Unpacking libpbcopper2.3.0:arm64 (2.3.0+dfsg-2) ... 350s Selecting previously unselected package libpbbam2.4.0:arm64. 350s Preparing to unpack .../90-libpbbam2.4.0_2.4.0+dfsg-1build2_arm64.deb ... 350s Unpacking libpbbam2.4.0:arm64 (2.4.0+dfsg-1build2) ... 350s Selecting previously unselected package libpbcopper-dev:arm64. 350s Preparing to unpack .../91-libpbcopper-dev_2.3.0+dfsg-2_arm64.deb ... 350s Unpacking libpbcopper-dev:arm64 (2.3.0+dfsg-2) ... 350s Selecting previously unselected package ninja-build. 350s Preparing to unpack .../92-ninja-build_1.12.1-1_arm64.deb ... 350s Unpacking ninja-build (1.12.1-1) ... 350s Selecting previously unselected package meson. 350s Preparing to unpack .../93-meson_1.7.0-1ubuntu1_all.deb ... 350s Unpacking meson (1.7.0-1ubuntu1) ... 350s Selecting previously unselected package pbbamtools. 350s Preparing to unpack .../94-pbbamtools_2.4.0+dfsg-1build2_arm64.deb ... 350s Unpacking pbbamtools (2.4.0+dfsg-1build2) ... 351s Selecting previously unselected package pkg-config:arm64. 351s Preparing to unpack .../95-pkg-config_1.8.1-4_arm64.deb ... 351s Unpacking pkg-config:arm64 (1.8.1-4) ... 351s Selecting previously unselected package python3-cram. 351s Preparing to unpack .../96-python3-cram_0.7-6_all.deb ... 351s Unpacking python3-cram (0.7-6) ... 351s Selecting previously unselected package samtools. 351s Preparing to unpack .../97-samtools_1.21-1_arm64.deb ... 351s Unpacking samtools (1.21-1) ... 351s Selecting previously unselected package dh-exec. 351s Preparing to unpack .../98-dh-exec_0.30_arm64.deb ... 351s Unpacking dh-exec (0.30) ... 351s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 351s Setting up libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu2) ... 351s Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... 351s Setting up libarchive-zip-perl (1.68-1) ... 351s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 351s Setting up libdeflate0:arm64 (1.23-1) ... 351s Setting up m4 (1.4.19-7) ... 351s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 351s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 351s Setting up googletest (1.16.0-1) ... 351s Setting up ninja-build (1.12.1-1) ... 351s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 351s Setting up autotools-dev (20220109.1) ... 351s Setting up libunbound8:arm64 (1.22.0-1ubuntu1) ... 351s Setting up libpkgconf3:arm64 (1.8.1-4) ... 351s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 351s Setting up libgnutls-dane0t64:arm64 (3.8.9-2ubuntu2) ... 351s Setting up libgssrpc4t64:arm64 (1.21.3-4ubuntu2) ... 351s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 351s Setting up libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ... 351s Setting up comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ... 351s Setting up libssl-dev:arm64 (3.4.1-1ubuntu1) ... 351s Setting up libmpc3:arm64 (1.3.1-1build2) ... 351s Setting up autopoint (0.23.1-1) ... 351s Setting up d-shlibs (0.109) ... 351s Setting up pkgconf-bin (1.8.1-4) ... 351s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 351s Setting up autoconf (2.72-3ubuntu1) ... 351s Setting up liblzma-dev:arm64 (5.6.4-1) ... 351s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 351s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 351s Setting up dwz (0.15-1build6) ... 351s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 351s Setting up python3-cram (0.7-6) ... 351s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 351s Setting up debugedit (1:5.1-2) ... 351s Setting up libhts3t64:arm64 (1.21+ds-1) ... 351s Setting up cmake-data (3.31.6-1ubuntu1) ... 351s Setting up librhash1:arm64 (1.4.5-1) ... 351s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 351s Setting up libisl23:arm64 (0.27-1) ... 351s Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... 351s Setting up libdeflate-dev:arm64 (1.23-1) ... 351s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 351s Setting up libbrotli-dev:arm64 (1.1.0-2build4) ... 351s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 351s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ... 351s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 351s Setting up libpbcopper2.3.0:arm64 (2.3.0+dfsg-2) ... 351s Setting up libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu2) ... 351s Setting up libbz2-dev:arm64 (1.0.8-6) ... 351s Setting up automake (1:1.17-3ubuntu1) ... 351s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 351s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 351s Setting up gettext (0.23.1-1) ... 351s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 351s Setting up libgtest-dev:arm64 (1.16.0-1) ... 351s Setting up nettle-dev:arm64 (3.10.1-1) ... 351s Setting up libkdb5-10t64:arm64 (1.21.3-4ubuntu2) ... 351s Setting up libpbbam2.4.0:arm64 (2.4.0+dfsg-1build2) ... 351s Setting up meson (1.7.0-1ubuntu1) ... 352s Setting up pkgconf:arm64 (1.8.1-4) ... 352s Setting up samtools (1.21-1) ... 352s Setting up intltool-debian (0.35.0+20060710.6) ... 352s Setting up pkg-config:arm64 (1.8.1-4) ... 352s Setting up libpbcopper-dev:arm64 (2.3.0+dfsg-2) ... 352s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 352s Setting up dh-strip-nondeterminism (1.14.1-2) ... 352s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 352s Setting up libkadm5srv-mit12:arm64 (1.21.3-4ubuntu2) ... 352s Setting up cmake (3.31.6-1ubuntu1) ... 352s Setting up pbbamtools (2.4.0+dfsg-1build2) ... 352s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 352s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 352s Setting up krb5-multidev:arm64 (1.21.3-4ubuntu2) ... 352s Setting up libgnutls28-dev:arm64 (3.8.9-2ubuntu2) ... 352s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 352s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 352s Setting up po-debconf (1.0.21+nmu1) ... 352s Setting up libkrb5-dev:arm64 (1.21.3-4ubuntu2) ... 352s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 352s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 352s Setting up cpp-14 (14.2.0-17ubuntu3) ... 352s Setting up cpp (4:14.2.0-1ubuntu1) ... 352s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 352s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 352s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 352s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 352s Setting up libcurl4-gnutls-dev:arm64 (8.12.1-3ubuntu1) ... 352s Setting up gcc-14 (14.2.0-17ubuntu3) ... 352s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 352s Setting up g++-14 (14.2.0-17ubuntu3) ... 352s Setting up libtool (2.5.4-4) ... 352s Setting up libhts-dev:arm64 (1.21+ds-1) ... 352s Setting up gcc (4:14.2.0-1ubuntu1) ... 352s Setting up dh-autoreconf (20) ... 352s Setting up g++ (4:14.2.0-1ubuntu1) ... 352s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 352s Setting up build-essential (12.10ubuntu1) ... 352s Setting up debhelper (13.24.1ubuntu2) ... 352s Setting up dh-exec (0.30) ... 352s Processing triggers for install-info (7.1.1-1) ... 353s Processing triggers for libc-bin (2.41-1ubuntu2) ... 353s Processing triggers for man-db (2.13.0-1) ... 356s autopkgtest [14:17:15]: test command1: debian/rules override_dh_auto_test 356s autopkgtest [14:17:15]: test command1: [----------------------- 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbbamify.t.in > tests/src/cram/pbbamify.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbindexdump_cpp.t.in > tests/src/cram/pbindexdump_cpp.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbindexdump_json.t.in > tests/src/cram/pbindexdump_json.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbmerge_aligned_ordering.t.in > tests/src/cram/pbmerge_aligned_ordering.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbmerge_dataset.t.in > tests/src/cram/pbmerge_dataset.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbmerge_fofn.t.in > tests/src/cram/pbmerge_fofn.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbmerge_mixed_ordering.t.in > tests/src/cram/pbmerge_mixed_ordering.deb.t 358s sed \ 358s -e 's/$BAM2SAM/samtools view/g' \ 358s -e 's/\-\-header\-only/-H/g' \ 358s -e 's/\-\-no\-header//g' \ 358s -e 's|@PacBioBAM_BinDir@/||g' \ 358s -e 's|$TOOLS_BIN/||g' \ 358s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/tests|g' \ 358s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 358s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata|g' \ 358s -e '/@PG/s|+dfsg||g' \ 358s -e 's/$SAMTOOLS/samtools/g' \ 358s tests/src/cram/pbmerge_pacbio_ordering.t.in > tests/src/cram/pbmerge_pacbio_ordering.deb.t 358s dh_auto_configure -O--buildsystem=meson 359s cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 362s The Meson build system 362s Version: 1.7.0 362s Source dir: /tmp/autopkgtest.w8Sz8N/build.bs5/src 362s Build dir: /tmp/autopkgtest.w8Sz8N/build.bs5/src/obj-aarch64-linux-gnu 362s Build type: native build 362s Project name: PacBioBAM 362s Project version: 2.4.0 362s C compiler for the host machine: cc (gcc 14.2.0 "cc (Ubuntu 14.2.0-17ubuntu3) 14.2.0") 362s C linker for the host machine: cc ld.bfd 2.44 362s C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Ubuntu 14.2.0-17ubuntu3) 14.2.0") 362s C++ linker for the host machine: c++ ld.bfd 2.44 362s Host machine cpu family: aarch64 362s Host machine cpu: aarch64 362s Compiler for C++ supports arguments -Wduplicated-cond: YES 362s Compiler for C++ supports arguments -Wduplicated-branches: YES 362s Compiler for C++ supports arguments -Wlogical-op: YES 362s Compiler for C++ supports arguments -Wrestrict: YES 362s Compiler for C++ supports arguments -Wnull-dereference: YES 362s Compiler for C++ supports arguments -Wuseless-cast: YES 362s Compiler for C++ supports arguments -Wdouble-promotion: YES 362s Compiler for C++ supports arguments -Wshadow: YES 362s Compiler for C++ supports arguments -Wformat=1: YES 362s Run-time dependency threads found: YES 362s Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 362s Run-time dependency Boost found: YES 1.83.0 (/usr/include) 362s Run-time dependency zlib found: YES 1.3.1 362s Run-time dependency htslib found: YES 1.21 362s Run-time dependency pbcopper found: YES 2.3.0 362s Configuring PbbamVersion.cpp using configuration 362s Configuring LibraryVersion.h using configuration 362s Program tools/check-formatting found: YES (/tmp/autopkgtest.w8Sz8N/build.bs5/src/tools/check-formatting) 362s Program python3 found: YES (/usr/bin/python3) 362s Program cram3 found: YES (/usr/bin/cram3) 362s Run-time dependency GTest found: YES 1.15.0 362s Configuring group.fofn using configuration 362s Configuring PbbamTestData.h using configuration 362s Configuring synthetic_movie_all.subreadset.xml using configuration 362s Configuring Bam2SamVersion.h using configuration 362s Configuring bam2sam.t using configuration 362s Configuring PbIndexVersion.h using configuration 362s Configuring PbIndexDumpVersion.h using configuration 362s Configuring pbindexdump_json.t using configuration 362s Configuring pbindexdump_cpp.t using configuration 362s Configuring PbMergeVersion.h using configuration 362s Configuring pbmerge_pacbio_ordering.t using configuration 362s Configuring pbmerge_aligned_ordering.t using configuration 362s Configuring pbmerge_mixed_ordering.t using configuration 362s Configuring pbmerge_dataset.t using configuration 362s Configuring pbmerge_fofn.t using configuration 362s Configuring PbBamifyVersion.h using configuration 362s Program samtools found: YES (/usr/bin/samtools) 362s Configuring pbbamify.t using configuration 362s Configuring CcsKineticsBystrandifyVersion.h using configuration 362s Build targets in project: 12 362s 362s PacBioBAM 2.4.0 362s 362s User defined options 362s buildtype : plain 362s libdir : lib/aarch64-linux-gnu 362s localstatedir : /var 362s prefix : /usr 362s python.bytecompile: -1 362s sysconfdir : /etc 362s wrap_mode : nodownload 362s 362s Found ninja-1.12.1 at /usr/bin/ninja 363s mkdir -p /tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata 363s python3 tests/scripts/generate_data.py /tmp/autopkgtest.w8Sz8N/build.bs5/src/tests/data /tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata 363s Generating test data in /tmp/autopkgtest.w8Sz8N/build.bs5/src/gendata 363s - Creating file: truncated.bam...done. 363s - Creating file: chunking_emptyfilters.subreadset.xml...done. 363s - Creating file: chunking_missingfilters.subreadset.xml...done. 363s - Creating file: normal.fa...done. 363s - Creating file: normal.fq...done. 363s - Creating symlink: aligned.bam...done. 363s - Creating symlink: aligned.bam.bai...done. 363s - Creating symlink: aligned.bam.pbi...done. 363s - Creating symlink: aligned2.bam...done. 363s - Creating symlink: aligned2.bam.bai...done. 363s - Creating symlink: aligned2.bam.pbi...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam...done. 363s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi...done. 363s - Creating symlink: missing_pbi.bam...done. 363s # Fix broken PATH 363s synthetic_movie_all_path=`find $PWD -name synthetic_movie_all.subreadset.xml` ; \ 363s sed -i -e "s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?${synthetic_movie_all_path}?" tests/src/cram/pbbamify* 363s BINDIR=`dirname $(find $PWD -name pbmerge -type f -executable)`; \ 363s LIBDIR=`find $PWD -name lib -type d`; \ 363s PATH="$BINDIR:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin" LD_LIBRARY_PATH="$LIBDIR:" \ 363s cram3 -v --preserve-env tests/src/cram/pbbamify.deb.t tests/src/cram/pbindexdump_cpp.deb.t tests/src/cram/pbindexdump_json.deb.t tests/src/cram/pbmerge_aligned_ordering.deb.t tests/src/cram/pbmerge_dataset.deb.t tests/src/cram/pbmerge_fofn.deb.t tests/src/cram/pbmerge_mixed_ordering.deb.t tests/src/cram/pbmerge_pacbio_ordering.deb.t 363s dirname: missing operand 363s Try 'dirname --help' for more information. 363s tests/src/cram/pbbamify.deb.t: passed 363s tests/src/cram/pbindexdump_cpp.deb.t: passed 363s tests/src/cram/pbindexdump_json.deb.t: passed 364s tests/src/cram/pbmerge_aligned_ordering.deb.t: passed 364s tests/src/cram/pbmerge_dataset.deb.t: passed 364s tests/src/cram/pbmerge_fofn.deb.t: passed 364s tests/src/cram/pbmerge_mixed_ordering.deb.t: passed 364s tests/src/cram/pbmerge_pacbio_ordering.deb.t: passed 364s # Ran 8 tests, 0 skipped, 0 failed. 365s autopkgtest [14:17:24]: test command1: -----------------------] 365s autopkgtest [14:17:24]: test command1: - - - - - - - - - - results - - - - - - - - - - 365s command1 PASS 366s autopkgtest [14:17:25]: @@@@@@@@@@@@@@@@@@@@ summary 366s command1 PASS 384s nova [W] Using flock in prodstack6-arm64 384s flock: timeout while waiting to get lock 384s Creating nova instance adt-plucky-arm64-pbbam-20250315-141118-juju-7f2275-prod-proposed-migration-environment-2-0720d007-901d-4b15-9a1f-482836a83c85 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 384s nova [W] Timed out waiting for 3d52bf2f-7bd2-4dbd-a2a6-8b0bd178288b to get deleted.