0s autopkgtest [14:08:04]: starting date and time: 2025-03-15 14:08:04+0000 0s autopkgtest [14:08:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:08:04]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7vysssbo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade paml --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-39.secgroup --name adt-plucky-arm64-paml-20250315-140803-juju-7f2275-prod-proposed-migration-environment-15-25d61628-1b9b-4839-8dcc-0957ed249084 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 163s autopkgtest [14:10:47]: testbed dpkg architecture: arm64 163s autopkgtest [14:10:47]: testbed apt version: 2.9.33 163s autopkgtest [14:10:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 164s autopkgtest [14:10:48]: testbed release detected to be: None 164s autopkgtest [14:10:48]: updating testbed package index (apt update) 165s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 165s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 165s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 165s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 165s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 165s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 165s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 165s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 166s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 166s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 166s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 166s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 166s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 166s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 166s Fetched 1094 kB in 1s (842 kB/s) 167s Reading package lists... 167s + lsb_release --codename --short 168s + RELEASE=plucky 168s + cat 168s + [ plucky != trusty ] 168s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Calculating upgrade... 168s Calculating upgrade... 169s The following packages will be upgraded: 169s python3-jinja2 strace 169s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 608 kB of archives. 169s After this operation, 11.3 kB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 170s Fetched 608 kB in 1s (742 kB/s) 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 171s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 171s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 171s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 171s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 171s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 171s Setting up strace (6.13+ds-1ubuntu1) ... 171s Processing triggers for man-db (2.13.0-1) ... 172s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 172s + /usr/lib/apt/apt-helper analyze-pattern ?true 172s + + sed s/\./\\./g 172s uname -r 172s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 172s + apt list ?obsolete 172s + tail -n+2 172s + grep -v ^linux-.*6\.14\.0-10-generic.* 172s + cut -d/ -f1 172s + obsolete_pkgs=linux-headers-6.11.0-8-generic 172s linux-headers-6.11.0-8 172s linux-image-6.11.0-8-generic 172s linux-modules-6.11.0-8-generic 172s linux-tools-6.11.0-8-generic 172s linux-tools-6.11.0-8 172s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Solving dependencies... 173s The following packages will be REMOVED: 173s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 173s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 173s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 173s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 173s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 173s After this operation, 267 MB disk space will be freed. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 173s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 173s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 173s Removing libpython3.12t64:arm64 (3.12.9-1) ... 173s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 174s Removing libnsl2:arm64 (1.3.0-3build3) ... 174s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 174s Removing libunwind8:arm64 (1.6.2-3.1) ... 174s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 174s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 176s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 176s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 176s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 176s /etc/kernel/postrm.d/initramfs-tools: 176s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 176s /etc/kernel/postrm.d/zz-flash-kernel: 176s flash-kernel: Kernel 6.11.0-8-generic has been removed. 176s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 176s /etc/kernel/postrm.d/zz-update-grub: 176s Sourcing file `/etc/default/grub' 176s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 176s Generating grub configuration file ... 177s Found linux image: /boot/vmlinuz-6.14.0-10-generic 177s Found initrd image: /boot/initrd.img-6.14.0-10-generic 177s Warning: os-prober will not be executed to detect other bootable partitions. 177s Systems on them will not be added to the GRUB boot configuration. 177s Check GRUB_DISABLE_OS_PROBER documentation entry. 177s Adding boot menu entry for UEFI Firmware Settings ... 177s done 177s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 177s Processing triggers for libc-bin (2.41-1ubuntu1) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 177s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 177s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 178s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 178s + grep -q trusty /etc/lsb-release 178s + [ ! -d /usr/share/doc/unattended-upgrades ] 178s + [ ! -d /usr/share/doc/lxd ] 178s + [ ! -d /usr/share/doc/lxd-client ] 178s + [ ! -d /usr/share/doc/snapd ] 178s + type iptables 178s + cat 178s + chmod 755 /etc/rc.local 178s + . /etc/rc.local 178s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 178s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 178s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 178s + uname -m 178s + [ aarch64 = ppc64le ] 178s + [ -d /run/systemd/system ] 178s + systemd-detect-virt --quiet --vm 178s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 178s + cat 178s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 178s + echo COMPRESS=lz4 178s autopkgtest [14:11:02]: upgrading testbed (apt dist-upgrade and autopurge) 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 179s Entering ResolveByKeep 180s 180s Calculating upgrade... 180s The following packages will be upgraded: 180s libc-bin libc-dev-bin libc6 libc6-dev locales 180s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 9530 kB of archives. 180s After this operation, 0 B of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 182s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 182s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 183s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 184s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 186s Preconfiguring packages ... 186s Fetched 9530 kB in 6s (1695 kB/s) 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 186s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 186s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 187s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 187s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Setting up libc6:arm64 (2.41-1ubuntu2) ... 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 187s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 187s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Setting up libc-bin (2.41-1ubuntu2) ... 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 187s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 187s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Setting up locales (2.41-1ubuntu2) ... 188s Generating locales (this might take a while)... 190s en_US.UTF-8... done 190s Generation complete. 190s Setting up libc-dev-bin (2.41-1ubuntu2) ... 190s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 190s Processing triggers for man-db (2.13.0-1) ... 191s Processing triggers for systemd (257.3-1ubuntu3) ... 192s Reading package lists... 192s Building dependency tree... 192s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 193s Solving dependencies... 194s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s autopkgtest [14:11:18]: rebooting testbed after setup commands that affected boot 217s autopkgtest [14:11:41]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 220s autopkgtest [14:11:44]: @@@@@@@@@@@@@@@@@@@@ apt-source paml 223s Get:1 http://ftpmaster.internal/ubuntu plucky/universe paml 4.9j+dfsg-6 (dsc) [2244 B] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe paml 4.9j+dfsg-6 (tar) [1375 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe paml 4.9j+dfsg-6 (diff) [8604 B] 224s gpgv: Signature made Wed Feb 26 22:07:37 2025 UTC 224s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 224s gpgv: issuer "emollier@debian.org" 224s gpgv: Can't check signature: No public key 224s dpkg-source: warning: cannot verify inline signature for ./paml_4.9j+dfsg-6.dsc: no acceptable signature found 224s autopkgtest [14:11:48]: testing package paml version 4.9j+dfsg-6 224s autopkgtest [14:11:48]: build not needed 225s autopkgtest [14:11:49]: test run-unit-test: preparing testbed 225s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 227s The following NEW packages will be installed: 227s paml paml-doc 227s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 1648 kB of archives. 227s After this operation, 8548 kB of additional disk space will be used. 227s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 paml arm64 4.9j+dfsg-6 [646 kB] 228s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 paml-doc all 4.9j+dfsg-6 [1002 kB] 229s Fetched 1648 kB in 2s (1059 kB/s) 229s Selecting previously unselected package paml. 229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 229s Preparing to unpack .../paml_4.9j+dfsg-6_arm64.deb ... 229s Unpacking paml (4.9j+dfsg-6) ... 229s Selecting previously unselected package paml-doc. 229s Preparing to unpack .../paml-doc_4.9j+dfsg-6_all.deb ... 229s Unpacking paml-doc (4.9j+dfsg-6) ... 229s Setting up paml-doc (4.9j+dfsg-6) ... 229s Setting up paml (4.9j+dfsg-6) ... 231s autopkgtest [14:11:55]: test run-unit-test: [----------------------- 231s Test 4 232s 232s CODONML in paml version 4.9j, October 2019 232s 232s ---------------------------------------------- 232s Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT 232s TTC | TCC | TAC | TGC 232s Leu L TTA | TCA | *** * TAA | *** * TGA 232s TTG | TCG | TAG | Trp W TGG 232s ---------------------------------------------- 232s Leu L CTT | Pro P CCT | His H CAT | Arg R CGT 232s CTC | CCC | CAC | CGC 232s CTA | CCA | Gln Q CAA | CGA 232s CTG | CCG | CAG | CGG 232s ---------------------------------------------- 232s Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT 232s ATC | ACC | AAC | AGC 232s ATA | ACA | Lys K AAA | Arg R AGA 232s Met M ATG | ACG | AAG | AGG 232s ---------------------------------------------- 232s Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT 232s GTC | GCC | GAC | GGC 232s GTA | GCA | Glu E GAA | GGA 232s GTG | GCG | GAG | GGG 232s ---------------------------------------------- 232s Nice code, uuh? 232s ns = 7 ls = 390 232s Reading sequences, sequential format.. 232s Reading seq # 1: Hsa_Human Reading seq # 2: Hla_gibbon Reading seq # 3: Cgu/Can_colobus Reading seq # 4: Pne_langur Reading seq # 5: Mmu_rhesus Reading seq # 6: Ssc_squirrelM Reading seq # 7: Cja_marmoset 232s Sequences read.. 232s Counting site patterns.. 0:00 232s Compressing, 81 patterns at 130 / 130 sites (100.0%), 0:00 232s Collecting fpatt[] & pose[], 81 patterns at 130 / 130 sites (100.0%), 0:00 232s Counting codons.. 232s 232s 168 bytes for distance 232s 79056 bytes for conP 232s 266724638627064 bytes for fhK 232s 5000000 bytes for space 232s 232s 2 branch types are in tree. Stop if wrong. 232s TREE # 1 232s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 232s 197640 bytes for conP, adjusted 232s 232s 0.012942 0.030476 0.067609 0.079986 0.070662 0.098033 0.067464 0.091642 0.014251 0.025674 0.095649 1.063887 1.194902 1.105408 232s 232s ntime & nrate & np: 11 3 14 232s 232s Bounds (np=14): 232s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 232s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 232s 232s np = 14 232s lnL0 = -961.148618 232s 232s Iterating by ming2 232s Initial: fx= 961.148618 232s x= 0.01294 0.03048 0.06761 0.07999 0.07066 0.09803 0.06746 0.09164 0.01425 0.02567 0.09565 1.06389 1.19490 1.10541 232s 232s 1 h-m-p 0.0000 0.0011 966.3577 ++CCYCCC 934.957304 5 0.0001 30 | 0/14 232s 2 h-m-p 0.0002 0.0010 156.0807 +YYCCCC 925.384636 5 0.0006 56 | 0/14 232s 3 h-m-p 0.0001 0.0007 94.8836 CCCC 924.844182 3 0.0002 79 | 0/14 232s 4 h-m-p 0.0004 0.0041 34.8191 YCCC 924.412586 3 0.0008 101 | 0/14 232s 5 h-m-p 0.0004 0.0022 80.6424 +YCCCC 923.321069 4 0.0011 126 | 0/14 232s 6 h-m-p 0.0002 0.0012 305.4404 YCCCCC 921.337612 5 0.0005 152 | 0/14 232s 7 h-m-p 0.0003 0.0017 455.0339 YCCCC 916.644603 4 0.0009 176 | 0/14 232s 8 h-m-p 0.0004 0.0018 845.5410 YCCCCC 909.575970 5 0.0008 202 | 0/14 232s 9 h-m-p 0.0004 0.0018 247.9183 CCCC 908.831379 3 0.0003 225 | 0/14 232s 10 h-m-p 0.0019 0.0094 11.4504 CC 908.809048 1 0.0004 244 | 0/14 232s 11 h-m-p 0.0017 0.1081 2.7653 +CCC 908.746346 2 0.0113 266 | 0/14 232s 12 h-m-p 0.0004 0.0107 69.4427 +YYC 908.540241 2 0.0014 286 | 0/14 232s 13 h-m-p 0.0015 0.0076 23.6839 CCC 908.518882 2 0.0005 307 | 0/14 232s 14 h-m-p 0.0095 4.7349 2.5433 +++CYCCC 906.619701 4 0.4925 334 | 0/14 232s 15 h-m-p 0.7645 3.8225 1.1908 CCCCC 904.921332 4 1.2502 359 | 0/14 232s 16 h-m-p 1.6000 8.0000 0.8560 CYCC 903.949710 3 1.6756 381 | 0/14 232s 17 h-m-p 1.6000 8.0000 0.6783 CYC 903.554091 2 1.7353 415 | 0/14 232s 18 h-m-p 1.6000 8.0000 0.4711 CYC 903.477952 2 1.5134 449 | 0/14 232s 19 h-m-p 1.6000 8.0000 0.1572 CC 903.464311 1 2.4512 482 | 0/14 232s 20 h-m-p 1.6000 8.0000 0.1379 ++ 903.429345 m 8.0000 513 | 0/14 235s 21 h-m-p 1.6000 8.0000 0.6269 YCCC 903.386872 3 3.1077 549 | 0/14 235s 22 h-m-p 1.6000 8.0000 0.1627 YC 903.360371 1 3.8860 581 | 0/14 235s 23 h-m-p 0.9969 8.0000 0.6341 ++ 903.279787 m 8.0000 612 | 0/14 235s 24 h-m-p 1.6000 8.0000 1.8578 CC 903.217366 1 2.2567 645 | 0/14 235s 25 h-m-p 1.4154 8.0000 2.9620 +YCCC 903.172057 3 3.7707 668 | 0/14 235s 26 h-m-p 1.6000 8.0000 3.7036 YCC 903.144969 2 2.9543 688 | 0/14 235s 27 h-m-p 1.6000 8.0000 5.9102 YC 903.121559 1 3.6540 706 | 0/14 235s 28 h-m-p 1.6000 8.0000 8.4935 YCC 903.106683 2 3.1299 726 | 0/14 235s 29 h-m-p 1.6000 8.0000 13.1577 YC 903.096078 1 3.5124 744 | 0/14 235s 30 h-m-p 1.6000 8.0000 19.2251 YCC 903.089145 2 2.9854 764 | 0/14 235s 31 h-m-p 1.6000 8.0000 28.5124 YC 903.083944 1 3.7417 782 | 0/14 235s 32 h-m-p 1.6000 8.0000 42.7865 YC 903.080809 1 2.8065 800 | 0/14 235s 33 h-m-p 1.6000 8.0000 59.9042 YC 903.078525 1 3.7296 818 | 0/14 235s 34 h-m-p 0.7742 3.8709 91.6453 +C 903.077029 0 2.9326 836 | 0/14 235s 35 h-m-p 0.1283 0.6415 134.0545 ++ 903.076645 m 0.6415 853 | 1/14 235s 36 h-m-p 0.5515 8.0000 0.0049 YC 903.076552 1 0.9939 871 | 1/14 235s 37 h-m-p 1.6000 8.0000 0.0001 C 903.076551 0 1.3435 901 | 1/14 235s 38 h-m-p 1.6000 8.0000 0.0000 C 903.076551 0 1.6137 931 235s Out.. 235s lnL = -903.076551 235s 932 lfun, 1864 eigenQcodon, 10252 P(t) 235s 235s 2 branch types are in tree. Stop if wrong. 235s TREE # 2 235s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 235s 0.069931 0.062603 0.035913 0.018551 0.100618 0.098556 0.107898 0.031160 0.019971 0.063818 0.076071 1.089900 1.085753 1.063496 235s 235s ntime & nrate & np: 11 3 14 235s 235s Bounds (np=14): 235s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 235s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 235s 235s np = 14 235s lnL0 = -947.697881 235s 235s Iterating by ming2 235s Initial: fx= 947.697881 235s x= 0.06993 0.06260 0.03591 0.01855 0.10062 0.09856 0.10790 0.03116 0.01997 0.06382 0.07607 1.08990 1.08575 1.06350 235s 235s 1 h-m-p 0.0000 0.0008 570.0878 ++YYCCCC 929.418022 5 0.0002 29 | 0/14 235s 2 h-m-p 0.0002 0.0008 138.2085 +YCYCCC 924.114216 5 0.0005 55 | 0/14 235s 3 h-m-p 0.0003 0.0016 65.4555 CCCCC 923.452111 4 0.0004 80 | 0/14 235s 4 h-m-p 0.0006 0.0032 36.3561 CCCC 923.105168 3 0.0007 103 | 0/14 235s 5 h-m-p 0.0003 0.0075 77.9655 +YCCCC 920.359573 4 0.0030 128 | 0/14 235s 6 h-m-p 0.0005 0.0047 483.8228 +YCCCCC 909.624906 5 0.0022 155 | 0/14 235s 7 h-m-p 0.0002 0.0011 495.9321 YCCCC 906.920904 4 0.0005 179 | 0/14 235s 8 h-m-p 0.0002 0.0009 80.8374 CYCCC 906.669198 4 0.0003 203 | 0/14 235s 9 h-m-p 0.0014 0.0107 17.3443 CCC 906.625621 2 0.0005 224 | 0/14 235s 10 h-m-p 0.0013 0.0329 6.1713 CCC 906.610470 2 0.0010 245 | 0/14 235s 11 h-m-p 0.0005 0.1396 11.2173 ++CYCC 906.377575 3 0.0109 269 | 0/14 235s 12 h-m-p 0.0033 0.0165 24.4515 CCC 906.348056 2 0.0006 290 | 0/14 235s 13 h-m-p 0.0049 2.3291 3.2148 +++YCCC 904.739914 3 0.4927 315 | 0/14 235s 14 h-m-p 0.0009 0.0043 681.5078 CCC 903.930139 2 0.0009 336 | 0/14 235s 15 h-m-p 1.0362 8.0000 0.6164 YCCC 902.408230 3 2.4084 358 | 0/14 235s 16 h-m-p 1.2959 6.4797 0.4564 CCC 901.886074 2 1.7728 393 | 0/14 235s 17 h-m-p 1.6000 8.0000 0.4045 YCC 901.733667 2 1.2330 427 | 0/14 235s 18 h-m-p 1.6000 8.0000 0.2620 YCCC 901.682121 3 0.9190 463 | 0/14 235s 19 h-m-p 1.6000 8.0000 0.1153 YCC 901.649017 2 2.6982 497 | 0/14 235s 20 h-m-p 1.6000 8.0000 0.1047 CC 901.638007 1 1.7269 530 | 0/14 235s 21 h-m-p 1.6000 8.0000 0.0162 CC 901.635843 1 1.3513 563 | 0/14 235s 22 h-m-p 1.6000 8.0000 0.0086 CC 901.635406 1 1.9751 596 | 0/14 235s 23 h-m-p 0.9010 8.0000 0.0188 ++ 901.633951 m 8.0000 627 | 0/14 236s 24 h-m-p 0.9377 8.0000 0.1600 +YC 901.631543 1 2.8253 660 | 0/14 236s 25 h-m-p 1.6000 8.0000 0.0937 CC 901.630905 1 1.2822 693 | 0/14 236s 26 h-m-p 1.6000 8.0000 0.0136 Y 901.630891 0 1.0434 724 | 0/14 236s 27 h-m-p 1.6000 8.0000 0.0025 Y 901.630891 0 1.0213 755 | 0/14 236s 28 h-m-p 1.6000 8.0000 0.0002 Y 901.630891 0 1.0174 786 | 0/14 236s 29 h-m-p 1.6000 8.0000 0.0000 Y 901.630891 0 0.9317 817 | 0/14 236s 30 h-m-p 1.6000 8.0000 0.0000 Y 901.630891 0 0.7987 848 | 0/14 236s 31 h-m-p 1.6000 8.0000 0.0000 -C 901.630891 0 0.1443 880 | 0/14 236s 32 h-m-p 0.1934 8.0000 0.0000 --N 901.630891 0 0.0030 913 236s Out.. 236s lnL = -901.630891 236s 914 lfun, 1828 eigenQcodon, 10054 P(t) 236s 236s Tree comparisons (Kishino & Hasegawa 1989; Shimodaira & Hasegawa 1999) 236s Reading lnf for tree # 1 Reading lnf for tree # 2, done. 236s Calculating SEs by sitewise comparison, 0:05 236s RELL Bootstrapping.. replicate: 100 / 10000 0:05 RELL Bootstrapping.. replicate: 200 / 10000 0:05 RELL Bootstrapping.. replicate: 300 / 10000 0:05 RELL Bootstrapping.. replicate: 400 / 10000 0:05 RELL Bootstrapping.. replicate: 500 / 10000 0:05 RELL Bootstrapping.. replicate: 600 / 10000 0:05 RELL Bootstrapping.. replicate: 700 / 10000 0:05 RELL Bootstrapping.. replicate: 800 / 10000 0:05 RELL Bootstrapping.. replicate: 900 / 10000 0:05 RELL Bootstrapping.. replicate: 1000 / 10000 0:05 RELL Bootstrapping.. replicate: 1100 / 10000 0:05 RELL Bootstrapping.. replicate: 1200 / 10000 0:05 RELL Bootstrapping.. replicate: 1300 / 10000 0:05 RELL Bootstrapping.. replicate: 1400 / 10000 0:05 RELL Bootstrapping.. replicate: 1500 / 10000 0:05 RELL Bootstrapping.. replicate: 1600 / 10000 0:05 RELL Bootstrapping.. replicate: 1700 / 10000 0:05 RELL Bootstrapping.. replicate: 1800 / 10000 0:05 RELL Bootstrapping.. replicate: 1900 / 10000 0:05 RELL Bootstrapping.. replicate: 2000 / 10000 0:05 RELL Bootstrapping.. replicate: 2100 / 10000 0:05 RELL Bootstrapping.. replicate: 2200 / 10000 0:05 RELL Bootstrapping.. replicate: 2300 / 10000 0:05 RELL Bootstrapping.. replicate: 2400 / 10000 0:05 RELL Bootstrapping.. replicate: 2500 / 10000 0:05 RELL Bootstrapping.. replicate: 2600 / 10000 0:05 RELL Bootstrapping.. replicate: 2700 / 10000 0:05 RELL Bootstrapping.. replicate: 2800 / 10000 0:05 RELL Bootstrapping.. replicate: 2900 / 10000 0:05 RELL Bootstrapping.. replicate: 3000 / 10000 0:05 RELL Bootstrapping.. replicate: 3100 / 10000 0:05 RELL Bootstrapping.. replicate: 3200 / 10000 0:05 RELL Bootstrapping.. replicate: 3300 / 10000 0:05 RELL Bootstrapping.. replicate: 3400 / 10000 0:05 RELL Bootstrapping.. replicate: 3500 / 10000 0:05 RELL Bootstrapping.. replicate: 3600 / 10000 0:05 RELL Bootstrapping.. replicate: 3700 / 10000 0:05 RELL Bootstrapping.. replicate: 3800 / 10000 0:05 RELL Bootstrapping.. replicate: 3900 / 10000 0:05 RELL Bootstrapping.. replicate: 4000 / 10000 0:05 RELL Bootstrapping.. replicate: 4100 / 10000 0:05 RELL Bootstrapping.. replicate: 4200 / 10000 0:05 RELL Bootstrapping.. replicate: 4300 / 10000 0:05 RELL Bootstrapping.. replicate: 4400 / 10000 0:05 RELL Bootstrapping.. replicate: 4500 / 10000 0:05 RELL Bootstrapping.. replicate: 4600 / 10000 0:05 RELL Bootstrapping.. replicate: 4700 / 10000 0:05 RELL Bootstrapping.. replicate: 4800 / 10000 0:05 RELL Bootstrapping.. replicate: 4900 / 10000 0:05 RELL Bootstrapping.. replicate: 5000 / 10000 0:05 RELL Bootstrapping.. replicate: 5100 / 10000 0:05 RELL Bootstrapping.. replicate: 5200 / 10000 0:05 RELL Bootstrapping.. replicate: 5300 / 10000 0:05 RELL Bootstrapping.. replicate: 5400 / 10000 0:05 RELL Bootstrapping.. replicate: 5500 / 10000 0:05 RELL Bootstrapping.. replicate: 5600 / 10000 0:05 RELL Bootstrapping.. replicate: 5700 / 10000 0:05 RELL Bootstrapping.. replicate: 5800 / 10000 0:05 RELL Bootstrapping.. replicate: 5900 / 10000 0:05 RELL Bootstrapping.. replicate: 6000 / 10000 0:05 RELL Bootstrapping.. replicate: 6100 / 10000 0:05 RELL Bootstrapping.. replicate: 6200 / 10000 0:05 RELL Bootstrapping.. replicate: 6300 / 10000 0:05 RELL Bootstrapping.. replicate: 6400 / 10000 0:05 RELL Bootstrapping.. replicate: 6500 / 10000 0:05 RELL Bootstrapping.. replicate: 6600 / 10000 0:05 RELL Bootstrapping.. replicate: 6700 / 10000 0:05 RELL Bootstrapping.. replicate: 6800 / 10000 0:05 RELL Bootstrapping.. replicate: 6900 / 10000 0:05 RELL Bootstrapping.. replicate: 7000 / 10000 0:05 RELL Bootstrapping.. replicate: 7100 / 10000 0:05 RELL Bootstrapping.. replicate: 7200 / 10000 0:05 RELL Bootstrapping.. replicate: 7300 / 10000 0:05 RELL Bootstrapping.. replicate: 7400 / 10000 0:05 RELL Bootstrapping.. replicate: 7500 / 10000 0:05 RELL Bootstrapping.. replicate: 7600 / 10000 0:05 RELL Bootstrapping.. replicate: 7700 / 10000 0:05 RELL Bootstrapping.. replicate: 7800 / 10000 0:05 RELL Bootstrapping.. replicate: 7900 / 10000 0:05 RELL Bootstrapping.. replicate: 8000 / 10000 0:05 RELL Bootstrapping.. replicate: 8100 / 10000 0:05 RELL Bootstrapping.. replicate: 8200 / 10000 0:05 RELL Bootstrapping.. replicate: 8300 / 10000 0:05 RELL Bootstrapping.. replicate: 8400 / 10000 0:05 RELL Bootstrapping.. replicate: 8500 / 10000 0:05 RELL Bootstrapping.. replicate: 8600 / 10000 0:05 RELL Bootstrapping.. replicate: 8700 / 10000 0:05 RELL Bootstrapping.. replicate: 8800 / 10000 0:05 RELL Bootstrapping.. replicate: 8900 / 10000 0:05 RELL Bootstrapping.. replicate: 9000 / 10000 0:05 RELL Bootstrapping.. replicate: 9100 / 10000 0:05 RELL Bootstrapping.. replicate: 9200 / 10000 0:05 RELL Bootstrapping.. replicate: 9300 / 10000 0:05 RELL Bootstrapping.. replicate: 9400 / 10000 0:05 RELL Bootstrapping.. replicate: 9500 / 10000 0:05 RELL Bootstrapping.. replicate: 9600 / 10000 0:05 RELL Bootstrapping.. replicate: 9700 / 10000 0:05 RELL Bootstrapping.. replicate: 9800 / 10000 0:05 RELL Bootstrapping.. replicate: 9900 / 10000 0:05 RELL Bootstrapping.. replicate: 10000 / 10000 0:05 236s now doing S-H test 236s 236s Time used: 0:05 236s Passed 236s 236s autopkgtest [14:12:00]: test run-unit-test: -----------------------] 237s run-unit-test PASS 237s autopkgtest [14:12:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 237s autopkgtest [14:12:01]: @@@@@@@@@@@@@@@@@@@@ summary 237s run-unit-test PASS 255s nova [W] Using flock in prodstack6-arm64 255s flock: timeout while waiting to get lock 255s Creating nova instance adt-plucky-arm64-paml-20250315-140803-juju-7f2275-prod-proposed-migration-environment-15-25d61628-1b9b-4839-8dcc-0957ed249084 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 255s nova [W] Timed out waiting for f4af7072-f427-4577-9977-6f3af73d286b to get deleted.