0s autopkgtest [14:28:40]: starting date and time: 2025-03-15 14:28:40+0000 0s autopkgtest [14:28:40]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:28:40]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n94o08vk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pairtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-3.secgroup --name adt-plucky-arm64-pairtools-20250315-140717-juju-7f2275-prod-proposed-migration-environment-20-fcfda84f-c0d3-4622-95db-05042310f879 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 172s autopkgtest [14:31:32]: testbed dpkg architecture: arm64 172s autopkgtest [14:31:32]: testbed apt version: 2.9.33 172s autopkgtest [14:31:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 173s autopkgtest [14:31:33]: testbed release detected to be: None 174s autopkgtest [14:31:34]: updating testbed package index (apt update) 174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 174s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 174s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 174s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 175s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 175s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 175s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 175s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 175s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 175s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 175s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 175s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 175s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 175s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 176s Fetched 1094 kB in 2s (687 kB/s) 177s Reading package lists... 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Calculating upgrade... 179s Calculating upgrade... 179s The following packages will be upgraded: 179s python3-jinja2 strace 179s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 608 kB of archives. 179s After this operation, 11.3 kB of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 181s Fetched 608 kB in 1s (621 kB/s) 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 181s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 181s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 181s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 181s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 181s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 182s Setting up strace (6.13+ds-1ubuntu1) ... 182s Processing triggers for man-db (2.13.0-1) ... 182s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Solving dependencies... 184s The following packages will be REMOVED: 184s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 184s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 184s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 184s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 184s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 184s After this operation, 267 MB disk space will be freed. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 184s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 184s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 184s Removing libpython3.12t64:arm64 (3.12.9-1) ... 184s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 184s Removing libnsl2:arm64 (1.3.0-3build3) ... 184s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 185s Removing libunwind8:arm64 (1.6.2-3.1) ... 185s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 185s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 187s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 188s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 188s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 188s /etc/kernel/postrm.d/initramfs-tools: 188s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 188s /etc/kernel/postrm.d/zz-flash-kernel: 188s flash-kernel: Kernel 6.11.0-8-generic has been removed. 188s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 188s /etc/kernel/postrm.d/zz-update-grub: 188s Sourcing file `/etc/default/grub' 188s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 188s Generating grub configuration file ... 188s Found linux image: /boot/vmlinuz-6.14.0-10-generic 188s Found initrd image: /boot/initrd.img-6.14.0-10-generic 188s Warning: os-prober will not be executed to detect other bootable partitions. 188s Systems on them will not be added to the GRUB boot configuration. 188s Check GRUB_DISABLE_OS_PROBER documentation entry. 188s Adding boot menu entry for UEFI Firmware Settings ... 188s done 188s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s Processing triggers for libc-bin (2.41-1ubuntu1) ... 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 189s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 189s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 189s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 189s autopkgtest [14:31:49]: upgrading testbed (apt dist-upgrade and autopurge) 189s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 190s Starting 2 pkgProblemResolver with broken count: 0 190s Done 191s Entering ResolveByKeep 192s 192s Calculating upgrade... 192s The following packages will be upgraded: 192s libc-bin libc-dev-bin libc6 libc6-dev locales 193s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s Need to get 9530 kB of archives. 193s After this operation, 0 B of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 198s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 198s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 204s Preconfiguring packages ... 204s Fetched 9530 kB in 11s (895 kB/s) 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 204s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 204s Setting up libc6:arm64 (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc-bin (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 205s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up locales (2.41-1ubuntu2) ... 206s Generating locales (this might take a while)... 209s en_US.UTF-8... done 209s Generation complete. 209s Setting up libc-dev-bin (2.41-1ubuntu2) ... 209s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 209s Processing triggers for man-db (2.13.0-1) ... 210s Processing triggers for systemd (257.3-1ubuntu3) ... 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Starting pkgProblemResolver with broken count: 0 212s Starting 2 pkgProblemResolver with broken count: 0 212s Done 212s Solving dependencies... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s autopkgtest [14:32:13]: rebooting testbed after setup commands that affected boot 238s autopkgtest [14:32:38]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 240s autopkgtest [14:32:40]: @@@@@@@@@@@@@@@@@@@@ apt-source pairtools 244s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.3-1build1 (dsc) [2493 B] 244s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.3-1build1 (tar) [1420 kB] 244s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.3-1build1 (diff) [7720 B] 244s gpgv: Signature made Tue Mar 4 15:54:00 2025 UTC 244s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 244s gpgv: Can't check signature: No public key 244s dpkg-source: warning: cannot verify inline signature for ./pairtools_1.1.3-1build1.dsc: no acceptable signature found 245s autopkgtest [14:32:45]: testing package pairtools version 1.1.3-1build1 245s autopkgtest [14:32:45]: build not needed 246s autopkgtest [14:32:46]: test upstream-tests: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 247s The following NEW packages will be installed: 247s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 247s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 247s libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 247s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 247s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 247s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 247s libxrender1 libxslt1.1 libxss1 python-is-python3 python-matplotlib-data 247s python3-bioframe python3-brotli python3-click python3-contourpy 247s python3-cycler python3-dateutil python3-decorator python3-fonttools 247s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 247s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 247s python3-packaging python3-pairtools python3-pandas python3-pandas-lib 247s python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy 247s python3-pysam python3-pytest python3-pytz python3-scipy 247s python3-standard-pipes python3-sympy python3-tk python3-tz python3-ufolib2 247s python3-unicodedata2 python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 247s x11-common 247s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 81.9 MB of archives. 247s After this operation, 361 MB of additional disk space will be used. 247s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 248s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 248s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 248s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 251s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 255s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 255s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 256s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 257s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 257s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 257s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 257s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 257s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 257s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 257s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 258s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 259s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 259s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 259s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 259s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 259s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 259s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 259s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 260s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 260s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 260s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 260s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 260s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 261s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 261s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 261s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 261s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 261s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 261s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 261s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 261s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 261s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 262s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 262s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 262s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 262s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 262s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 python-is-python3 all 3.11.4-1 [2684 B] 262s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 265s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 265s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 265s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 266s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 266s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-2 [106 kB] 266s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 266s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 266s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 266s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 266s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 266s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 266s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 267s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1build1 [1258 kB] 268s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 268s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 268s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 283s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 283s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 287s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 287s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build3 [360 kB] 287s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 297s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 298s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 298s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 298s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-7build1 [17.3 MB] 312s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB] 313s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B] 313s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 317s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 319s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bioframe all 0.4.1-2 [76.3 kB] 319s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 319s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 319s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-standard-pipes all 3.13.0-5 [7414 B] 319s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB] 323s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pairtools arm64 1.1.3-1build1 [208 kB] 323s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 323s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 324s Fetched 81.9 MB in 1min 16s (1075 kB/s) 324s Selecting previously unselected package python3-numpy-dev:arm64. 324s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 324s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 324s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 324s Selecting previously unselected package libblas3:arm64. 324s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 324s Unpacking libblas3:arm64 (3.12.1-2) ... 324s Selecting previously unselected package libgfortran5:arm64. 324s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 324s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 324s Selecting previously unselected package liblapack3:arm64. 324s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 324s Unpacking liblapack3:arm64 (3.12.1-2) ... 325s Selecting previously unselected package python3-numpy. 325s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 325s Unpacking python3-numpy (1:2.2.3+ds-5) ... 325s Selecting previously unselected package libtcl8.6:arm64. 325s Preparing to unpack .../05-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 325s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 325s Selecting previously unselected package fonts-dejavu-mono. 325s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-mono (2.37-8) ... 325s Selecting previously unselected package fonts-dejavu-core. 325s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-core (2.37-8) ... 325s Selecting previously unselected package fontconfig-config. 325s Preparing to unpack .../08-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 325s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 325s Selecting previously unselected package libfontconfig1:arm64. 325s Preparing to unpack .../09-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 325s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 325s Selecting previously unselected package libxrender1:arm64. 325s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 325s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 325s Selecting previously unselected package libxft2:arm64. 325s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 325s Unpacking libxft2:arm64 (2.3.6-1build1) ... 325s Selecting previously unselected package x11-common. 325s Preparing to unpack .../12-x11-common_1%3a7.7+23ubuntu3_all.deb ... 325s Unpacking x11-common (1:7.7+23ubuntu3) ... 325s Selecting previously unselected package libxss1:arm64. 325s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 325s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 325s Selecting previously unselected package libtk8.6:arm64. 325s Preparing to unpack .../14-libtk8.6_8.6.16-1_arm64.deb ... 325s Unpacking libtk8.6:arm64 (8.6.16-1) ... 325s Selecting previously unselected package tk8.6-blt2.5. 325s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 325s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 326s Selecting previously unselected package blt. 326s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 326s Unpacking blt (2.5.3+dfsg-8) ... 326s Selecting previously unselected package fonts-lyx. 326s Preparing to unpack .../17-fonts-lyx_2.4.3-1_all.deb ... 326s Unpacking fonts-lyx (2.4.3-1) ... 326s Selecting previously unselected package libdeflate0:arm64. 326s Preparing to unpack .../18-libdeflate0_1.23-1_arm64.deb ... 326s Unpacking libdeflate0:arm64 (1.23-1) ... 326s Selecting previously unselected package libgomp1:arm64. 326s Preparing to unpack .../19-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 326s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 326s Selecting previously unselected package libgraphite2-3:arm64. 326s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 326s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 326s Selecting previously unselected package libharfbuzz0b:arm64. 326s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_arm64.deb ... 326s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 326s Selecting previously unselected package libhtscodecs2:arm64. 326s Preparing to unpack .../22-libhtscodecs2_1.6.1-2_arm64.deb ... 326s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 326s Selecting previously unselected package libhts3t64:arm64. 326s Preparing to unpack .../23-libhts3t64_1.21+ds-1_arm64.deb ... 326s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 326s Selecting previously unselected package libimagequant0:arm64. 326s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_arm64.deb ... 326s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 326s Selecting previously unselected package libjpeg-turbo8:arm64. 326s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 326s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 326s Selecting previously unselected package libjpeg8:arm64. 326s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_arm64.deb ... 326s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 326s Selecting previously unselected package libjs-jquery. 326s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 326s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 326s Selecting previously unselected package libjs-jquery-ui. 326s Preparing to unpack .../28-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 326s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 326s Selecting previously unselected package liblbfgsb0:arm64. 326s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 326s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 326s Selecting previously unselected package liblcms2-2:arm64. 326s Preparing to unpack .../30-liblcms2-2_2.16-2_arm64.deb ... 326s Unpacking liblcms2-2:arm64 (2.16-2) ... 326s Selecting previously unselected package liblerc4:arm64. 326s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 326s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 326s Selecting previously unselected package libqhull-r8.0:arm64. 326s Preparing to unpack .../32-libqhull-r8.0_2020.2-6build1_arm64.deb ... 326s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 326s Selecting previously unselected package libraqm0:arm64. 326s Preparing to unpack .../33-libraqm0_0.10.2-1_arm64.deb ... 326s Unpacking libraqm0:arm64 (0.10.2-1) ... 326s Selecting previously unselected package libsharpyuv0:arm64. 326s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1_arm64.deb ... 326s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 326s Selecting previously unselected package libjbig0:arm64. 326s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 326s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 326s Selecting previously unselected package libwebp7:arm64. 326s Preparing to unpack .../36-libwebp7_1.5.0-0.1_arm64.deb ... 326s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 326s Selecting previously unselected package libtiff6:arm64. 326s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 326s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 326s Selecting previously unselected package libwebpdemux2:arm64. 326s Preparing to unpack .../38-libwebpdemux2_1.5.0-0.1_arm64.deb ... 326s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 326s Selecting previously unselected package libwebpmux3:arm64. 326s Preparing to unpack .../39-libwebpmux3_1.5.0-0.1_arm64.deb ... 326s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 326s Selecting previously unselected package libxslt1.1:arm64. 326s Preparing to unpack .../40-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 326s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 326s Selecting previously unselected package python-is-python3. 326s Preparing to unpack .../41-python-is-python3_3.11.4-1_all.deb ... 326s Unpacking python-is-python3 (3.11.4-1) ... 327s Selecting previously unselected package python-matplotlib-data. 327s Preparing to unpack .../42-python-matplotlib-data_3.8.3-7build1_all.deb ... 327s Unpacking python-matplotlib-data (3.8.3-7build1) ... 327s Selecting previously unselected package python3-dateutil. 327s Preparing to unpack .../43-python3-dateutil_2.9.0-3_all.deb ... 327s Unpacking python3-dateutil (2.9.0-3) ... 327s Selecting previously unselected package libopenjp2-7:arm64. 327s Preparing to unpack .../44-libopenjp2-7_2.5.3-2_arm64.deb ... 327s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 327s Selecting previously unselected package python3-pil:arm64. 327s Preparing to unpack .../45-python3-pil_11.1.0-5build1_arm64.deb ... 327s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 327s Selecting previously unselected package python3.12-tk. 327s Preparing to unpack .../46-python3.12-tk_3.12.9-1_arm64.deb ... 327s Unpacking python3.12-tk (3.12.9-1) ... 327s Selecting previously unselected package python3.13-tk. 327s Preparing to unpack .../47-python3.13-tk_3.13.2-2_arm64.deb ... 327s Unpacking python3.13-tk (3.13.2-2) ... 327s Selecting previously unselected package python3-tk:arm64. 327s Preparing to unpack .../48-python3-tk_3.13.1-1_arm64.deb ... 327s Unpacking python3-tk:arm64 (3.13.1-1) ... 327s Selecting previously unselected package python3-pil.imagetk:arm64. 327s Preparing to unpack .../49-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 327s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ... 327s Selecting previously unselected package python3-contourpy. 327s Preparing to unpack .../50-python3-contourpy_1.3.1-1build1_arm64.deb ... 327s Unpacking python3-contourpy (1.3.1-1build1) ... 327s Selecting previously unselected package python3-cycler. 327s Preparing to unpack .../51-python3-cycler_0.12.1-1_all.deb ... 327s Unpacking python3-cycler (0.12.1-1) ... 327s Selecting previously unselected package python3-brotli. 327s Preparing to unpack .../52-python3-brotli_1.1.0-2build4_arm64.deb ... 327s Unpacking python3-brotli (1.1.0-2build4) ... 327s Selecting previously unselected package python3-platformdirs. 327s Preparing to unpack .../53-python3-platformdirs_4.3.6-1_all.deb ... 327s Unpacking python3-platformdirs (4.3.6-1) ... 327s Selecting previously unselected package python3-fs. 327s Preparing to unpack .../54-python3-fs_2.4.16-7_all.deb ... 327s Unpacking python3-fs (2.4.16-7) ... 327s Selecting previously unselected package python3-lxml:arm64. 327s Preparing to unpack .../55-python3-lxml_5.3.1-1build1_arm64.deb ... 327s Unpacking python3-lxml:arm64 (5.3.1-1build1) ... 327s Selecting previously unselected package python3-lz4. 327s Preparing to unpack .../56-python3-lz4_4.4.0+dfsg-1build1_arm64.deb ... 327s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 327s Selecting previously unselected package python3-decorator. 327s Preparing to unpack .../57-python3-decorator_5.1.1-5_all.deb ... 327s Unpacking python3-decorator (5.1.1-5) ... 327s Selecting previously unselected package python3-scipy. 327s Preparing to unpack .../58-python3-scipy_1.14.1-4ubuntu2_arm64.deb ... 327s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 328s Selecting previously unselected package python3-mpmath. 328s Preparing to unpack .../59-python3-mpmath_1.3.0-1_all.deb ... 328s Unpacking python3-mpmath (1.3.0-1) ... 328s Selecting previously unselected package python3-sympy. 328s Preparing to unpack .../60-python3-sympy_1.13.3-5_all.deb ... 328s Unpacking python3-sympy (1.13.3-5) ... 328s Selecting previously unselected package python3-ufolib2. 328s Preparing to unpack .../61-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 328s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 328s Selecting previously unselected package python3-unicodedata2. 328s Preparing to unpack .../62-python3-unicodedata2_15.1.0+ds-1build3_arm64.deb ... 328s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ... 328s Selecting previously unselected package unicode-data. 328s Preparing to unpack .../63-unicode-data_15.1.0-1_all.deb ... 328s Unpacking unicode-data (15.1.0-1) ... 328s Selecting previously unselected package python3-fonttools. 328s Preparing to unpack .../64-python3-fonttools_4.55.3-2build1_arm64.deb ... 328s Unpacking python3-fonttools (4.55.3-2build1) ... 328s Selecting previously unselected package python3-kiwisolver. 328s Preparing to unpack .../65-python3-kiwisolver_1.4.7-3build1_arm64.deb ... 328s Unpacking python3-kiwisolver (1.4.7-3build1) ... 328s Selecting previously unselected package python3-packaging. 328s Preparing to unpack .../66-python3-packaging_24.2-1_all.deb ... 328s Unpacking python3-packaging (24.2-1) ... 328s Selecting previously unselected package python3-matplotlib. 328s Preparing to unpack .../67-python3-matplotlib_3.8.3-7build1_arm64.deb ... 328s Unpacking python3-matplotlib (3.8.3-7build1) ... 329s Selecting previously unselected package python3-pytz. 329s Preparing to unpack .../68-python3-pytz_2025.1-3_all.deb ... 329s Unpacking python3-pytz (2025.1-3) ... 329s Selecting previously unselected package python3-tz. 329s Preparing to unpack .../69-python3-tz_2025.1-3_all.deb ... 329s Unpacking python3-tz (2025.1-3) ... 329s Selecting previously unselected package python3-pandas-lib:arm64. 329s Preparing to unpack .../70-python3-pandas-lib_2.2.3+dfsg-8build1_arm64.deb ... 329s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 329s Selecting previously unselected package python3-pandas. 329s Preparing to unpack .../71-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 329s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 329s Selecting previously unselected package python3-bioframe. 329s Preparing to unpack .../72-python3-bioframe_0.4.1-2_all.deb ... 329s Unpacking python3-bioframe (0.4.1-2) ... 329s Selecting previously unselected package python3-click. 329s Preparing to unpack .../73-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 329s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 329s Selecting previously unselected package python3-iniconfig. 329s Preparing to unpack .../74-python3-iniconfig_1.1.1-2_all.deb ... 329s Unpacking python3-iniconfig (1.1.1-2) ... 329s Selecting previously unselected package python3-standard-pipes. 329s Preparing to unpack .../75-python3-standard-pipes_3.13.0-5_all.deb ... 329s Unpacking python3-standard-pipes (3.13.0-5) ... 329s Selecting previously unselected package python3-pysam. 329s Preparing to unpack .../76-python3-pysam_0.23.0+ds-1build1_arm64.deb ... 329s Unpacking python3-pysam (0.23.0+ds-1build1) ... 330s Selecting previously unselected package python3-pairtools. 330s Preparing to unpack .../77-python3-pairtools_1.1.3-1build1_arm64.deb ... 330s Unpacking python3-pairtools (1.1.3-1build1) ... 330s Selecting previously unselected package python3-pluggy. 330s Preparing to unpack .../78-python3-pluggy_1.5.0-1_all.deb ... 330s Unpacking python3-pluggy (1.5.0-1) ... 330s Selecting previously unselected package python3-pytest. 330s Preparing to unpack .../79-python3-pytest_8.3.5-1_all.deb ... 330s Unpacking python3-pytest (8.3.5-1) ... 330s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 330s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 330s Setting up liblcms2-2:arm64 (2.16-2) ... 330s Setting up python3-iniconfig (1.1.1-2) ... 330s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 330s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 330s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 330s Setting up python3-standard-pipes (3.13.0-5) ... 330s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 330s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ... 330s Setting up fonts-lyx (2.4.3-1) ... 330s Setting up x11-common (1:7.7+23ubuntu3) ... 330s Setting up libdeflate0:arm64 (1.23-1) ... 330s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 330s Setting up python3-pytz (2025.1-3) ... 331s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 331s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 331s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 331s Setting up python3-platformdirs (4.3.6-1) ... 331s Setting up python3-tz (2025.1-3) ... 331s Setting up python3-fs (2.4.16-7) ... 331s Setting up unicode-data (15.1.0-1) ... 331s Setting up python3-decorator (5.1.1-5) ... 331s Setting up libblas3:arm64 (3.12.1-2) ... 331s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 331s Setting up python3-packaging (24.2-1) ... 331s Setting up python3-brotli (1.1.0-2build4) ... 331s Setting up python3-cycler (0.12.1-1) ... 332s Setting up 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Processing triggers for man-db (2.13.0-1) ... 355s autopkgtest [14:34:35]: test upstream-tests: [----------------------- 355s 355s rm -rf pairtools 355s 355s pytest-3 --ignore=.pc 356s ============================= test session starts ============================== 356s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 356s rootdir: /tmp/autopkgtest.0iO8ao/build.1h2/src 356s configfile: pytest.ini 356s testpaths: tests 356s plugins: typeguard-4.4.2 356s collected 34 items 356s 363s tests/test_dedup.py . [ 2%] 366s tests/test_filterbycov.py . [ 5%] 368s tests/test_flip.py . [ 8%] 369s tests/test_header.py . [ 11%] 369s tests/test_headerops.py ....... [ 32%] 370s tests/test_markasdup.py . [ 35%] 375s tests/test_merge.py . [ 38%] 378s tests/test_parse.py ... [ 47%] 383s tests/test_parse2.py .... [ 58%] 384s tests/test_restrict.py . [ 61%] 385s tests/test_scaling.py . [ 64%] 394s tests/test_select.py ....... [ 85%] 395s tests/test_sort.py . [ 88%] 397s tests/test_split.py . [ 91%] 404s tests/test_stats.py ... [100%] 404s 404s =============================== warnings summary =============================== 404s ../../../../usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2 404s /usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2: DeprecationWarning: pipes was removed in Python 3.13. Please be aware that you are currently NOT using standard 'pipes', but instead a separately installed 'standard-pipes'. 404s import pipes 404s 404s tests/test_stats.py::test_find_dist_freq_convergence_distance 404s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: divide by zero encountered in scalar divide 404s strands: n_cis_pairs / norm_factor 404s 404s tests/test_stats.py::test_find_dist_freq_convergence_distance 404s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: divide by zero encountered in scalar divide 404s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 404s 404s tests/test_stats.py::test_find_dist_freq_convergence_distance 404s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:410: RuntimeWarning: invalid value encountered in divide 404s np.abs(dist_freqs_by_strands[strands] - avg_freq_all_strands) 404s 404s tests/test_stats.py::test_find_dist_freq_convergence_distance 404s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: invalid value encountered in scalar divide 404s strands: n_cis_pairs / norm_factor 404s 404s tests/test_stats.py::test_find_dist_freq_convergence_distance 404s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: invalid value encountered in scalar divide 404s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 404s 404s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 404s ======================= 34 passed, 6 warnings in 48.75s ======================== 404s ALL PASS 404s 404s echo ALL PASS 405s autopkgtest [14:35:25]: test upstream-tests: -----------------------] 405s upstream-tests PASS 405s autopkgtest [14:35:25]: test upstream-tests: - - - - - - - - - - results - - - - - - - - - - 405s autopkgtest [14:35:25]: @@@@@@@@@@@@@@@@@@@@ summary 405s upstream-tests PASS 423s nova [W] Using flock in prodstack6-arm64 423s Creating nova instance adt-plucky-arm64-pairtools-20250315-140717-juju-7f2275-prod-proposed-migration-environment-20-fcfda84f-c0d3-4622-95db-05042310f879 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 423s nova [W] Timed out waiting for 51a6b924-1a19-4f1b-973e-b88bef3b2887 to get deleted.