0s autopkgtest [08:03:25]: starting date and time: 2025-02-16 08:03:25+0000 0s autopkgtest [08:03:25]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [08:03:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e4q2t5z7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade pairtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-20.secgroup --name adt-plucky-arm64-pairtools-20250216-080325-juju-7f2275-prod-proposed-migration-environment-2-fdbf2541-b58b-476a-8c76-593f506aa423 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 352s autopkgtest [08:09:17]: testbed dpkg architecture: arm64 352s autopkgtest [08:09:17]: testbed apt version: 2.9.28 352s autopkgtest [08:09:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 353s autopkgtest [08:09:18]: testbed release detected to be: None 353s autopkgtest [08:09:18]: updating testbed package index (apt update) 354s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 354s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 354s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 354s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 354s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB] 354s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [74.8 kB] 354s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [812 kB] 354s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 354s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [167 kB] 354s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B] 354s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [921 kB] 354s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [10.0 kB] 355s Fetched 2119 kB in 1s (2147 kB/s) 355s Reading package lists... 356s Reading package lists... 356s Building dependency tree... 356s Reading state information... 357s Calculating upgrade... 357s The following packages will be upgraded: 357s pci.ids 357s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 357s Need to get 284 kB of archives. 357s After this operation, 1024 B of additional disk space will be used. 357s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 pci.ids all 0.0~2025.02.12-1 [284 kB] 358s Fetched 284 kB in 0s (687 kB/s) 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116609 files and directories currently installed.) 359s Preparing to unpack .../pci.ids_0.0~2025.02.12-1_all.deb ... 359s Unpacking pci.ids (0.0~2025.02.12-1) over (0.0~2025.02.05-1) ... 359s Setting up pci.ids (0.0~2025.02.12-1) ... 359s Reading package lists... 359s Building dependency tree... 359s Reading state information... 360s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 360s autopkgtest [08:09:25]: upgrading testbed (apt dist-upgrade and autopurge) 360s Reading package lists... 360s Building dependency tree... 360s Reading state information... 361s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 361s Starting 2 pkgProblemResolver with broken count: 0 361s Done 362s Entering ResolveByKeep 362s 362s The following packages will be upgraded: 362s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 362s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 362s Need to get 10.7 MB of archives. 362s After this operation, 358 kB of additional disk space will be used. 362s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu1 [24.0 kB] 363s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu1 [1750 kB] 363s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu1 [4246 kB] 363s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu1 [2910 kB] 363s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu1 [600 kB] 363s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB] 364s Preconfiguring packages ... 364s Fetched 10.7 MB in 1s (11.3 MB/s) 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116609 files and directories currently installed.) 364s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_arm64.deb ... 364s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 364s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_arm64.deb ... 364s Unpacking libc6-dev:arm64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 364s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 364s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 364s Preparing to unpack .../libc6_2.41-1ubuntu1_arm64.deb ... 364s Checking for services that may need to be restarted... 364s Checking init scripts... 364s Checking for services that may need to be restarted... 364s Checking init scripts... 364s Stopping some services possibly affected by the upgrade (will be restarted later): 364s cron: stopping...done. 364s 364s Unpacking libc6:arm64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 365s Setting up libc6:arm64 (2.41-1ubuntu1) ... 365s Checking for services that may need to be restarted... 365s Checking init scripts... 365s Restarting services possibly affected by the upgrade: 365s cron: restarting...done. 365s 365s Services restarted successfully. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116610 files and directories currently installed.) 365s Preparing to unpack .../libc-bin_2.41-1ubuntu1_arm64.deb ... 365s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 365s Setting up libc-bin (2.41-1ubuntu1) ... 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116610 files and directories currently installed.) 365s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_arm64.deb ... 365s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 366s Setting up iproute2 (6.13.0-1ubuntu1) ... 366s Setting up locales (2.41-1ubuntu1) ... 366s Installing new version of config file /etc/locale.alias ... 366s Generating locales (this might take a while)... 368s en_US.UTF-8... done 368s Generation complete. 368s Setting up libc-dev-bin (2.41-1ubuntu1) ... 368s Setting up libc6-dev:arm64 (2.41-1ubuntu1) ... 368s Processing triggers for man-db (2.13.0-1) ... 370s Processing triggers for systemd (257.2-3ubuntu1) ... 370s Reading package lists... 371s Building dependency tree... 371s Reading state information... 371s Starting pkgProblemResolver with broken count: 0 371s Starting 2 pkgProblemResolver with broken count: 0 371s Done 372s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 374s autopkgtest [08:09:39]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 15:49:33 UTC 2025 375s autopkgtest [08:09:40]: @@@@@@@@@@@@@@@@@@@@ apt-source pairtools 377s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (dsc) [2470 B] 377s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (tar) [1419 kB] 377s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (diff) [7580 B] 377s gpgv: Signature made Sat Dec 21 20:37:34 2024 UTC 377s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 377s gpgv: issuer "tchet@debian.org" 377s gpgv: Can't check signature: No public key 377s dpkg-source: warning: cannot verify inline signature for ./pairtools_1.1.2-1.dsc: no acceptable signature found 377s autopkgtest [08:09:42]: testing package pairtools version 1.1.2-1 378s autopkgtest [08:09:43]: build not needed 378s autopkgtest [08:09:43]: test upstream-tests: preparing testbed 379s Reading package lists... 379s Building dependency tree... 379s Reading state information... 380s Starting pkgProblemResolver with broken count: 0 380s Starting 2 pkgProblemResolver with broken count: 0 380s Done 380s The following NEW packages will be installed: 380s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 380s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 380s libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 380s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 380s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 380s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 380s libxrender1 libxslt1.1 libxss1 python-is-python3 python-matplotlib-data 380s python3-bioframe python3-brotli python3-click python3-contourpy 380s python3-cycler python3-dateutil python3-decorator python3-fonttools 380s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 380s python3-matplotlib python3-mpmath python3-numpy python3-packaging 380s python3-pairtools python3-pandas python3-pandas-lib python3-pil 380s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pysam 380s python3-pytest python3-pytz python3-scipy python3-standard-pipes 380s python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 380s python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data x11-common 381s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 381s Need to get 75.5 MB of archives. 381s After this operation, 403 MB of additional disk space will be used. 381s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 381s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 381s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 381s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 381s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 381s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 381s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 381s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 381s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 381s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 381s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 381s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 381s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 381s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 381s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 381s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-17ubuntu1 [437 kB] 381s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-17ubuntu1 [145 kB] 381s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 381s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 381s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB] 381s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 381s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 381s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 381s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 381s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 381s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 381s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 382s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 382s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 382s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 382s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 382s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 382s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 382s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 382s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 382s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 382s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 382s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 382s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 382s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 python-is-python3 all 3.11.4-1 [2684 B] 382s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 382s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 382s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB] 382s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5 [491 kB] 382s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 382s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-1 [106 kB] 382s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 382s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5 [9948 B] 382s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [4148 kB] 382s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1 [216 kB] 382s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 382s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build3 [342 kB] 382s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB] 382s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B] 382s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 382s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-6 [90.7 kB] 382s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1 [1600 kB] 382s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1 [27.3 kB] 382s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 382s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu1 [19.5 MB] 382s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 382s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 383s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 383s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build2 [360 kB] 383s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 383s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2 [1615 kB] 383s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3 [62.5 kB] 383s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 383s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3ubuntu2 [4616 kB] 383s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6925 kB] 383s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 383s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bioframe all 0.4.1-2 [76.3 kB] 383s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.8-1 [79.8 kB] 383s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 383s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-standard-pipes all 3.13.0-5 [7414 B] 383s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.23.0+ds-1 [4080 kB] 383s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pairtools arm64 1.1.2-1 [260 kB] 383s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 383s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.4-1 [252 kB] 384s Fetched 75.5 MB in 3s (27.1 MB/s) 384s Selecting previously unselected package libtcl8.6:arm64. 384s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116611 files and directories currently installed.) 384s Preparing to unpack .../00-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 384s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 384s Selecting previously unselected package fonts-dejavu-mono. 384s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 384s Unpacking fonts-dejavu-mono (2.37-8) ... 384s Selecting previously unselected package fonts-dejavu-core. 384s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 384s Unpacking fonts-dejavu-core (2.37-8) ... 384s Selecting previously unselected package fontconfig-config. 384s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 384s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 384s Selecting previously unselected package libfontconfig1:arm64. 384s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 384s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 384s Selecting previously unselected package libxrender1:arm64. 384s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 384s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 384s Selecting previously unselected package libxft2:arm64. 384s Preparing to unpack .../06-libxft2_2.3.6-1build1_arm64.deb ... 384s Unpacking libxft2:arm64 (2.3.6-1build1) ... 384s Selecting previously unselected package x11-common. 384s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 384s Unpacking x11-common (1:7.7+23ubuntu3) ... 384s Selecting previously unselected package libxss1:arm64. 384s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build3_arm64.deb ... 384s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 384s Selecting previously unselected package libtk8.6:arm64. 384s Preparing to unpack .../09-libtk8.6_8.6.16-1_arm64.deb ... 384s Unpacking libtk8.6:arm64 (8.6.16-1) ... 384s Selecting previously unselected package tk8.6-blt2.5. 384s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 384s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 384s Selecting previously unselected package blt. 385s Preparing to unpack .../11-blt_2.5.3+dfsg-7build1_arm64.deb ... 385s Unpacking blt (2.5.3+dfsg-7build1) ... 385s Selecting previously unselected package fonts-lyx. 385s Preparing to unpack .../12-fonts-lyx_2.4.3-1_all.deb ... 385s Unpacking fonts-lyx (2.4.3-1) ... 385s Selecting previously unselected package libblas3:arm64. 385s Preparing to unpack .../13-libblas3_3.12.1-2_arm64.deb ... 385s Unpacking libblas3:arm64 (3.12.1-2) ... 385s Selecting previously unselected package libdeflate0:arm64. 385s Preparing to unpack .../14-libdeflate0_1.23-1_arm64.deb ... 385s Unpacking libdeflate0:arm64 (1.23-1) ... 385s Selecting previously unselected package libgfortran5:arm64. 385s Preparing to unpack .../15-libgfortran5_14.2.0-17ubuntu1_arm64.deb ... 385s Unpacking libgfortran5:arm64 (14.2.0-17ubuntu1) ... 385s Selecting previously unselected package libgomp1:arm64. 385s Preparing to unpack .../16-libgomp1_14.2.0-17ubuntu1_arm64.deb ... 385s Unpacking libgomp1:arm64 (14.2.0-17ubuntu1) ... 385s Selecting previously unselected package libgraphite2-3:arm64. 385s Preparing to unpack .../17-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 385s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 385s Selecting previously unselected package libharfbuzz0b:arm64. 385s Preparing to unpack .../18-libharfbuzz0b_10.2.0-1_arm64.deb ... 385s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 385s Selecting previously unselected package libhtscodecs2:arm64. 385s Preparing to unpack .../19-libhtscodecs2_1.6.1-1_arm64.deb ... 385s Unpacking libhtscodecs2:arm64 (1.6.1-1) ... 385s Selecting previously unselected package libhts3t64:arm64. 385s Preparing to unpack .../20-libhts3t64_1.21+ds-1_arm64.deb ... 385s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 385s Selecting previously unselected package libimagequant0:arm64. 385s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_arm64.deb ... 385s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 385s Selecting previously unselected package libjpeg-turbo8:arm64. 385s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 385s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 385s Selecting previously unselected package libjpeg8:arm64. 385s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_arm64.deb ... 385s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 385s Selecting previously unselected package libjs-jquery. 385s Preparing to unpack .../24-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 385s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 385s Selecting previously unselected package libjs-jquery-ui. 385s Preparing to unpack .../25-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 385s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 385s Selecting previously unselected package liblapack3:arm64. 385s Preparing to unpack .../26-liblapack3_3.12.1-2_arm64.deb ... 385s Unpacking liblapack3:arm64 (3.12.1-2) ... 385s Selecting previously unselected package liblbfgsb0:arm64. 385s Preparing to unpack .../27-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 385s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 385s Selecting previously unselected package liblcms2-2:arm64. 385s Preparing to unpack .../28-liblcms2-2_2.16-2_arm64.deb ... 385s Unpacking liblcms2-2:arm64 (2.16-2) ... 385s Selecting previously unselected package liblerc4:arm64. 385s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 385s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 385s Selecting previously unselected package libqhull-r8.0:arm64. 385s Preparing to unpack .../30-libqhull-r8.0_2020.2-6build1_arm64.deb ... 385s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 385s Selecting previously unselected package libraqm0:arm64. 385s Preparing to unpack .../31-libraqm0_0.10.2-1_arm64.deb ... 385s Unpacking libraqm0:arm64 (0.10.2-1) ... 385s Selecting previously unselected package libsharpyuv0:arm64. 385s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_arm64.deb ... 385s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 385s Selecting previously unselected package libjbig0:arm64. 385s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 385s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 385s Selecting previously unselected package libwebp7:arm64. 386s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 386s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 386s Selecting previously unselected package libtiff6:arm64. 386s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 386s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 386s Selecting previously unselected package libwebpdemux2:arm64. 386s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_arm64.deb ... 386s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 386s Selecting previously unselected package libwebpmux3:arm64. 386s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_arm64.deb ... 386s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 386s Selecting previously unselected package libxslt1.1:arm64. 386s Preparing to unpack .../38-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 386s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 386s Selecting previously unselected package python-is-python3. 386s Preparing to unpack .../39-python-is-python3_3.11.4-1_all.deb ... 386s Unpacking python-is-python3 (3.11.4-1) ... 386s Selecting previously unselected package python-matplotlib-data. 386s Preparing to unpack .../40-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 386s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 386s Selecting previously unselected package python3-dateutil. 386s Preparing to unpack .../41-python3-dateutil_2.9.0-3_all.deb ... 386s Unpacking python3-dateutil (2.9.0-3) ... 386s Selecting previously unselected package libopenjp2-7:arm64. 386s Preparing to unpack .../42-libopenjp2-7_2.5.0-2ubuntu3_arm64.deb ... 386s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu3) ... 386s Selecting previously unselected package python3-pil:arm64. 386s Preparing to unpack .../43-python3-pil_11.1.0-5_arm64.deb ... 386s Unpacking python3-pil:arm64 (11.1.0-5) ... 386s Selecting previously unselected package python3.12-tk. 386s Preparing to unpack .../44-python3.12-tk_3.12.9-1_arm64.deb ... 386s Unpacking python3.12-tk (3.12.9-1) ... 386s Selecting previously unselected package python3.13-tk. 386s Preparing to unpack .../45-python3.13-tk_3.13.2-1_arm64.deb ... 386s Unpacking python3.13-tk (3.13.2-1) ... 386s Selecting previously unselected package python3-tk:arm64. 386s Preparing to unpack .../46-python3-tk_3.13.1-1_arm64.deb ... 386s Unpacking python3-tk:arm64 (3.13.1-1) ... 386s Selecting previously unselected package python3-pil.imagetk:arm64. 386s Preparing to unpack .../47-python3-pil.imagetk_11.1.0-5_arm64.deb ... 386s Unpacking python3-pil.imagetk:arm64 (11.1.0-5) ... 386s Selecting previously unselected package python3-numpy. 386s Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-13_arm64.deb ... 386s Unpacking python3-numpy (1:1.26.4+ds-13) ... 386s Selecting previously unselected package python3-contourpy. 386s Preparing to unpack .../49-python3-contourpy_1.3.1-1_arm64.deb ... 386s Unpacking python3-contourpy (1.3.1-1) ... 386s Selecting previously unselected package python3-cycler. 386s Preparing to unpack .../50-python3-cycler_0.12.1-1_all.deb ... 386s Unpacking python3-cycler (0.12.1-1) ... 386s Selecting previously unselected package python3-brotli. 386s Preparing to unpack .../51-python3-brotli_1.1.0-2build3_arm64.deb ... 386s Unpacking python3-brotli (1.1.0-2build3) ... 386s Selecting previously unselected package python3-pytz. 386s Preparing to unpack .../52-python3-pytz_2025.1-3_all.deb ... 386s Unpacking python3-pytz (2025.1-3) ... 387s Selecting previously unselected package python3-tz. 387s Preparing to unpack .../53-python3-tz_2025.1-3_all.deb ... 387s Unpacking python3-tz (2025.1-3) ... 387s Selecting previously unselected package python3-platformdirs. 387s Preparing to unpack .../54-python3-platformdirs_4.3.6-1_all.deb ... 387s Unpacking python3-platformdirs (4.3.6-1) ... 387s Selecting previously unselected package python3-fs. 387s Preparing to unpack .../55-python3-fs_2.4.16-6_all.deb ... 387s Unpacking python3-fs (2.4.16-6) ... 387s Selecting previously unselected package python3-lxml:arm64. 387s Preparing to unpack .../56-python3-lxml_5.3.1-1_arm64.deb ... 387s Unpacking python3-lxml:arm64 (5.3.1-1) ... 387s Selecting previously unselected package python3-lz4. 387s Preparing to unpack .../57-python3-lz4_4.4.0+dfsg-1_arm64.deb ... 387s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 387s Selecting previously unselected package python3-decorator. 387s Preparing to unpack .../58-python3-decorator_5.1.1-5_all.deb ... 387s Unpacking python3-decorator (5.1.1-5) ... 387s Selecting previously unselected package python3-scipy. 387s Preparing to unpack .../59-python3-scipy_1.14.1-4ubuntu1_arm64.deb ... 387s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 387s Selecting previously unselected package python3-mpmath. 387s Preparing to unpack .../60-python3-mpmath_1.3.0-1_all.deb ... 387s Unpacking python3-mpmath (1.3.0-1) ... 387s Selecting previously unselected package python3-sympy. 387s Preparing to unpack .../61-python3-sympy_1.13.3-1_all.deb ... 387s Unpacking python3-sympy (1.13.3-1) ... 388s Selecting previously unselected package python3-ufolib2. 388s Preparing to unpack .../62-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 388s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 388s Selecting previously unselected package python3-unicodedata2. 388s Preparing to unpack .../63-python3-unicodedata2_15.1.0+ds-1build2_arm64.deb ... 388s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 388s Selecting previously unselected package unicode-data. 388s Preparing to unpack .../64-unicode-data_15.1.0-1_all.deb ... 388s Unpacking unicode-data (15.1.0-1) ... 388s Selecting previously unselected package python3-fonttools. 388s Preparing to unpack .../65-python3-fonttools_4.55.3-2_arm64.deb ... 388s Unpacking python3-fonttools (4.55.3-2) ... 388s Selecting previously unselected package python3-kiwisolver. 388s Preparing to unpack .../66-python3-kiwisolver_1.4.7-3_arm64.deb ... 388s Unpacking python3-kiwisolver (1.4.7-3) ... 388s Selecting previously unselected package python3-packaging. 388s Preparing to unpack .../67-python3-packaging_24.2-1_all.deb ... 388s Unpacking python3-packaging (24.2-1) ... 388s Selecting previously unselected package python3-matplotlib. 388s Preparing to unpack .../68-python3-matplotlib_3.8.3-3ubuntu2_arm64.deb ... 388s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 388s Selecting previously unselected package python3-pandas-lib:arm64. 388s Preparing to unpack .../69-python3-pandas-lib_2.2.3+dfsg-8_arm64.deb ... 388s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8) ... 389s Selecting previously unselected package python3-pandas. 389s Preparing to unpack .../70-python3-pandas_2.2.3+dfsg-8_all.deb ... 389s Unpacking python3-pandas (2.2.3+dfsg-8) ... 389s Selecting previously unselected package python3-bioframe. 389s Preparing to unpack .../71-python3-bioframe_0.4.1-2_all.deb ... 389s Unpacking python3-bioframe (0.4.1-2) ... 389s Selecting previously unselected package python3-click. 389s Preparing to unpack .../72-python3-click_8.1.8-1_all.deb ... 389s Unpacking python3-click (8.1.8-1) ... 389s Selecting previously unselected package python3-iniconfig. 389s Preparing to unpack .../73-python3-iniconfig_1.1.1-2_all.deb ... 389s Unpacking python3-iniconfig (1.1.1-2) ... 389s Selecting previously unselected package python3-standard-pipes. 389s Preparing to unpack .../74-python3-standard-pipes_3.13.0-5_all.deb ... 389s Unpacking python3-standard-pipes (3.13.0-5) ... 389s Selecting previously unselected package python3-pysam. 389s Preparing to unpack .../75-python3-pysam_0.23.0+ds-1_arm64.deb ... 389s Unpacking python3-pysam (0.23.0+ds-1) ... 389s Selecting previously unselected package python3-pairtools. 389s Preparing to unpack .../76-python3-pairtools_1.1.2-1_arm64.deb ... 389s Unpacking python3-pairtools (1.1.2-1) ... 389s Selecting previously unselected package python3-pluggy. 389s Preparing to unpack .../77-python3-pluggy_1.5.0-1_all.deb ... 389s Unpacking python3-pluggy (1.5.0-1) ... 389s Selecting previously unselected package python3-pytest. 389s Preparing to unpack .../78-python3-pytest_8.3.4-1_all.deb ... 389s Unpacking python3-pytest (8.3.4-1) ... 390s Setting up libhtscodecs2:arm64 (1.6.1-1) ... 390s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 390s Setting up liblcms2-2:arm64 (2.16-2) ... 390s Setting up python3-iniconfig (1.1.1-2) ... 390s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 390s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 390s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 390s Setting up python3-standard-pipes (3.13.0-5) ... 390s Setting up python3-lz4 (4.4.0+dfsg-1) ... 390s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 390s Setting up fonts-lyx (2.4.3-1) ... 390s Setting up x11-common (1:7.7+23ubuntu3) ... 390s Setting up libdeflate0:arm64 (1.23-1) ... 390s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 390s Setting up python3-pytz (2025.1-3) ... 390s Setting up libgomp1:arm64 (14.2.0-17ubuntu1) ... 390s Setting up python3-click (8.1.8-1) ... 390s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 390s Setting up python3-platformdirs (4.3.6-1) ... 391s Setting up python3-tz (2025.1-3) ... 391s Setting up python3-fs (2.4.16-6) ... 391s Setting up unicode-data (15.1.0-1) ... 391s Setting up python3-decorator (5.1.1-5) ... 391s Setting up libblas3:arm64 (3.12.1-2) ... 391s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 391s Setting up python3-packaging (24.2-1) ... 391s Setting up python3-brotli (1.1.0-2build3) ... 391s Setting up python3-cycler (0.12.1-1) ... 391s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 391s Setting up fonts-dejavu-mono (2.37-8) ... 391s Setting up python3-kiwisolver (1.4.7-3) ... 391s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 391s Setting up fonts-dejavu-core (2.37-8) ... 391s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 391s Setting up libgfortran5:arm64 (14.2.0-17ubuntu1) ... 391s Setting up python3-pluggy (1.5.0-1) ... 392s Setting up libwebp7:arm64 (1.5.0-0.1) ... 392s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 392s Setting up libhts3t64:arm64 (1.21+ds-1) ... 392s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu3) ... 392s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 392s Setting up python3-dateutil (2.9.0-3) ... 392s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 392s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 392s Setting up python3-mpmath (1.3.0-1) ... 392s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 392s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 392s Setting up python-is-python3 (3.11.4-1) ... 392s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 392s Setting up python3-sympy (1.13.3-1) ... 399s Setting up liblapack3:arm64 (3.12.1-2) ... 399s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 399s Setting up python3-pysam (0.23.0+ds-1) ... 399s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 399s Setting up python3-pytest (8.3.4-1) ... 400s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 400s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 400s Setting up libraqm0:arm64 (0.10.2-1) ... 400s Setting up python3-numpy (1:1.26.4+ds-13) ... 401s Setting up python3-lxml:arm64 (5.3.1-1) ... 402s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 402s Setting up python3-contourpy (1.3.1-1) ... 402s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 402s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 402s Setting up libxft2:arm64 (2.3.6-1build1) ... 402s Setting up python3-scipy (1.14.1-4ubuntu1) ... 405s Setting up libtk8.6:arm64 (8.6.16-1) ... 405s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8) ... 405s Setting up python3.12-tk (3.12.9-1) ... 405s Setting up python3.13-tk (3.13.2-1) ... 405s Setting up python3-pil:arm64 (11.1.0-5) ... 405s Setting up python3-pandas (2.2.3+dfsg-8) ... 410s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 410s Setting up blt (2.5.3+dfsg-7build1) ... 410s Setting up python3-tk:arm64 (3.13.1-1) ... 410s Setting up python3-pil.imagetk:arm64 (11.1.0-5) ... 410s Setting up python3-fonttools (4.55.3-2) ... 411s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 411s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 413s Setting up python3-bioframe (0.4.1-2) ... 413s Setting up python3-pairtools (1.1.2-1) ... 413s Processing triggers for libc-bin (2.41-1ubuntu1) ... 413s Processing triggers for man-db (2.13.0-1) ... 414s autopkgtest [08:10:19]: test upstream-tests: [----------------------- 415s 415s rm -rf pairtools 415s 415s pytest-3 --ignore=.pc 416s ============================= test session starts ============================== 416s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 416s rootdir: /tmp/autopkgtest.mrKOWc/build.J6x/src 416s configfile: pytest.ini 416s testpaths: tests 416s plugins: typeguard-4.4.1 416s collected 34 items 416s 422s tests/test_dedup.py . [ 2%] 426s tests/test_filterbycov.py . [ 5%] 427s tests/test_flip.py . [ 8%] 428s tests/test_header.py . [ 11%] 428s tests/test_headerops.py ....... [ 32%] 429s tests/test_markasdup.py . [ 35%] 434s tests/test_merge.py . [ 38%] 437s tests/test_parse.py ... [ 47%] 442s tests/test_parse2.py .... [ 58%] 444s tests/test_restrict.py . [ 61%] 445s tests/test_scaling.py . [ 64%] 453s tests/test_select.py ....... [ 85%] 455s tests/test_sort.py . [ 88%] 456s tests/test_split.py . [ 91%] 463s tests/test_stats.py ... [100%] 463s 463s =============================== warnings summary =============================== 463s ../../../../usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2 463s /usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2: DeprecationWarning: pipes was removed in Python 3.13. Please be aware that you are currently NOT using standard 'pipes', but instead a separately installed 'standard-pipes'. 463s import pipes 463s 463s tests/test_stats.py::test_find_dist_freq_convergence_distance 463s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: divide by zero encountered in scalar divide 463s strands: n_cis_pairs / norm_factor 463s 463s tests/test_stats.py::test_find_dist_freq_convergence_distance 463s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: divide by zero encountered in scalar divide 463s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 463s 463s tests/test_stats.py::test_find_dist_freq_convergence_distance 463s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:410: RuntimeWarning: invalid value encountered in divide 463s np.abs(dist_freqs_by_strands[strands] - avg_freq_all_strands) 463s 463s tests/test_stats.py::test_find_dist_freq_convergence_distance 463s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: invalid value encountered in scalar divide 463s strands: n_cis_pairs / norm_factor 463s 463s tests/test_stats.py::test_find_dist_freq_convergence_distance 463s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: invalid value encountered in scalar divide 463s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 463s 463s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 463s ======================= 34 passed, 6 warnings in 48.14s ======================== 463s ALL PASS 463s 463s echo ALL PASS 464s autopkgtest [08:11:09]: test upstream-tests: -----------------------] 464s upstream-tests PASS 464s autopkgtest [08:11:09]: test upstream-tests: - - - - - - - - - - results - - - - - - - - - - 464s autopkgtest [08:11:09]: @@@@@@@@@@@@@@@@@@@@ summary 464s upstream-tests PASS 740s nova [W] Using flock in prodstack6-arm64 740s Creating nova instance adt-plucky-arm64-pairtools-20250216-080325-juju-7f2275-prod-proposed-migration-environment-2-fdbf2541-b58b-476a-8c76-593f506aa423 from image adt/ubuntu-plucky-arm64-server-20250216.img (UUID a098a761-c895-418e-827f-00d410a1ece9)... 740s nova [W] Timed out waiting for 4a2caa18-4dfc-4774-aac0-ec5ba8783dc7 to get deleted.