0s autopkgtest [01:27:00]: starting date and time: 2025-03-16 01:27:00+0000 0s autopkgtest [01:27:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:27:00]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.73714_1_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade opentsne --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-29.secgroup --name adt-plucky-arm64-opentsne-20250316-012700-juju-7f2275-prod-proposed-migration-environment-15-f8f6ae2f-7828-423f-b2ba-05a4b745914d --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 166s autopkgtest [01:29:46]: testbed dpkg architecture: arm64 166s autopkgtest [01:29:46]: testbed apt version: 2.9.33 166s autopkgtest [01:29:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 167s autopkgtest [01:29:47]: testbed release detected to be: None 168s autopkgtest [01:29:48]: updating testbed package index (apt update) 168s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 168s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 168s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 168s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 169s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 169s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 169s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 169s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 169s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 169s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 169s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 169s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 169s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 170s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 170s Fetched 972 kB in 2s (572 kB/s) 171s Reading package lists... 172s + lsb_release --codename --short 172s + RELEASE=plucky 172s + cat 172s + [ plucky != trusty ] 172s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Calculating upgrade... 173s Calculating upgrade... 174s The following packages will be upgraded: 174s pinentry-curses python3-jinja2 strace 174s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 647 kB of archives. 174s After this operation, 11.3 kB of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 175s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 175s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 176s Fetched 647 kB in 2s (372 kB/s) 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 177s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 177s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 177s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 177s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 177s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 177s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 177s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 177s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 177s Setting up strace (6.13+ds-1ubuntu1) ... 177s Processing triggers for man-db (2.13.0-1) ... 178s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 178s + /usr/lib/apt/apt-helper analyze-pattern ?true 178s + uname -r 178s + sed s/\./\\./g 178s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 178s + tail -n+2 178s + apt list ?obsolete 178s + + grep -v ^linux-.*6\.14\.0-10-generic.* 178s cut -d/ -f1 179s + obsolete_pkgs=linux-headers-6.11.0-8-generic 179s linux-headers-6.11.0-8 179s linux-image-6.11.0-8-generic 179s linux-modules-6.11.0-8-generic 179s linux-tools-6.11.0-8-generic 179s linux-tools-6.11.0-8 179s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 182s The following packages will be REMOVED: 182s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 182s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 182s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 182s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 182s 0 upgraded, 0 newly installed, 11 to remove and 0 not upgraded. 182s After this operation, 267 MB disk space will be freed. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 182s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 182s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 182s Removing libpython3.12t64:arm64 (3.12.9-1) ... 182s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 183s Removing libnsl2:arm64 (1.3.0-3build3) ... 183s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 183s Removing libunwind8:arm64 (1.6.2-3.1) ... 183s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 183s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 185s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 186s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 186s /etc/kernel/postrm.d/initramfs-tools: 186s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 186s /etc/kernel/postrm.d/zz-flash-kernel: 186s flash-kernel: Kernel 6.11.0-8-generic has been removed. 186s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 186s /etc/kernel/postrm.d/zz-update-grub: 186s Sourcing file `/etc/default/grub' 186s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 186s Generating grub configuration file ... 187s Found linux image: /boot/vmlinuz-6.14.0-10-generic 187s Found initrd image: /boot/initrd.img-6.14.0-10-generic 187s Warning: os-prober will not be executed to detect other bootable partitions. 187s Systems on them will not be added to the GRUB boot configuration. 187s Check GRUB_DISABLE_OS_PROBER documentation entry. 187s Adding boot menu entry for UEFI Firmware Settings ... 187s done 187s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s Processing triggers for libc-bin (2.41-1ubuntu1) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 188s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 188s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 188s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s + grep -q trusty /etc/lsb-release 188s + [ ! -d /usr/share/doc/unattended-upgrades ] 188s + [ ! -d /usr/share/doc/lxd ] 188s + [ ! -d /usr/share/doc/lxd-client ] 188s + [ ! -d /usr/share/doc/snapd ] 188s + type iptables 188s + cat 188s + chmod 755 /etc/rc.local 188s + . /etc/rc.local 188s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 188s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 188s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 188s + uname -m 188s + [ aarch64 = ppc64le ] 188s + [ -d /run/systemd/system ] 188s + systemd-detect-virt --quiet --vm 188s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 188s + cat 188s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 188s + echo COMPRESS=lz4 188s autopkgtest [01:30:08]: upgrading testbed (apt dist-upgrade and autopurge) 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 191s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 193s Entering ResolveByKeep 193s 194s Calculating upgrade... 195s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s Solving dependencies... 199s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 200s autopkgtest [01:30:20]: rebooting testbed after setup commands that affected boot 222s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 229s autopkgtest [01:30:49]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 233s autopkgtest [01:30:53]: @@@@@@@@@@@@@@@@@@@@ apt-source opentsne 261s Get:1 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (dsc) [2377 B] 261s Get:2 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (tar) [22.1 MB] 261s Get:3 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (diff) [5396 B] 261s gpgv: Signature made Tue Mar 4 17:45:11 2025 UTC 261s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 261s gpgv: Can't check signature: No public key 261s dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-1ubuntu4.dsc: no acceptable signature found 261s autopkgtest [01:31:21]: testing package opentsne version 1.0.2-1ubuntu4 262s autopkgtest [01:31:22]: build not needed 265s autopkgtest [01:31:25]: test python: preparing testbed 265s Reading package lists... 265s Building dependency tree... 265s Reading state information... 266s Starting pkgProblemResolver with broken count: 0 266s Starting 2 pkgProblemResolver with broken count: 0 266s Done 267s The following NEW packages will be installed: 267s libblas3 libfftw3-double3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 267s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 267s python3-numpy-dev python3-opentsne python3-packaging python3-pluggy 267s python3-pytest python3-pytest-runner python3-scipy python3-sklearn 267s python3-sklearn-lib python3-threadpoolctl 267s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. 267s Need to get 31.6 MB of archives. 267s After this operation, 139 MB of additional disk space will be used. 267s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 267s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 267s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 268s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 270s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 275s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 275s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 275s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 275s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.2-2 [886 B] 275s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 275s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 275s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 275s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 291s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 291s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 295s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 296s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opentsne arm64 1.0.2-1ubuntu4 [375 kB] 297s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 297s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 297s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 297s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-runner all 2.11.1-4 [7450 B] 298s Fetched 31.6 MB in 30s (1040 kB/s) 298s Selecting previously unselected package python3-numpy-dev:arm64. 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 298s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 298s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 298s Selecting previously unselected package libblas3:arm64. 298s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 298s Unpacking libblas3:arm64 (3.12.1-2) ... 298s Selecting previously unselected package libgfortran5:arm64. 298s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 298s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 298s Selecting previously unselected package liblapack3:arm64. 298s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 298s Unpacking liblapack3:arm64 (3.12.1-2) ... 299s Selecting previously unselected package python3-numpy. 299s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 299s Unpacking python3-numpy (1:2.2.3+ds-5) ... 299s Selecting previously unselected package libgomp1:arm64. 299s Preparing to unpack .../05-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 299s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 299s Selecting previously unselected package libfftw3-double3:arm64. 299s Preparing to unpack .../06-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 299s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 299s Selecting previously unselected package liblbfgsb0:arm64. 299s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 299s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 299s Selecting previously unselected package python3-all. 299s Preparing to unpack .../08-python3-all_3.13.2-2_arm64.deb ... 299s Unpacking python3-all (3.13.2-2) ... 299s Selecting previously unselected package python3-decorator. 299s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 299s Unpacking python3-decorator (5.1.1-5) ... 299s Selecting previously unselected package python3-iniconfig. 299s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 299s Unpacking python3-iniconfig (1.1.1-2) ... 299s Selecting previously unselected package python3-joblib. 299s Preparing to unpack .../11-python3-joblib_1.4.2-3_all.deb ... 299s Unpacking python3-joblib (1.4.2-3) ... 299s Selecting previously unselected package python3-scipy. 299s Preparing to unpack .../12-python3-scipy_1.14.1-4ubuntu2_arm64.deb ... 299s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 300s Selecting previously unselected package python3-threadpoolctl. 300s Preparing to unpack .../13-python3-threadpoolctl_3.1.0-1_all.deb ... 300s Unpacking python3-threadpoolctl (3.1.0-1) ... 300s Selecting previously unselected package python3-sklearn-lib:arm64. 300s Preparing to unpack .../14-python3-sklearn-lib_1.4.2+dfsg-8_arm64.deb ... 300s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 300s Selecting previously unselected package python3-sklearn. 300s Preparing to unpack .../15-python3-sklearn_1.4.2+dfsg-8_all.deb ... 300s Unpacking python3-sklearn (1.4.2+dfsg-8) ... 300s Selecting previously unselected package python3-opentsne. 300s Preparing to unpack .../16-python3-opentsne_1.0.2-1ubuntu4_arm64.deb ... 300s Unpacking python3-opentsne (1.0.2-1ubuntu4) ... 300s Selecting previously unselected package python3-packaging. 300s Preparing to unpack .../17-python3-packaging_24.2-1_all.deb ... 300s Unpacking python3-packaging (24.2-1) ... 300s Selecting previously unselected package python3-pluggy. 300s Preparing to unpack .../18-python3-pluggy_1.5.0-1_all.deb ... 300s Unpacking python3-pluggy (1.5.0-1) ... 301s Selecting previously unselected package python3-pytest. 301s Preparing to unpack .../19-python3-pytest_8.3.5-1_all.deb ... 301s Unpacking python3-pytest (8.3.5-1) ... 301s Selecting previously unselected package python3-pytest-runner. 301s Preparing to unpack .../20-python3-pytest-runner_2.11.1-4_all.deb ... 301s Unpacking python3-pytest-runner (2.11.1-4) ... 301s Setting up python3-iniconfig (1.1.1-2) ... 301s Setting up python3-joblib (1.4.2-3) ... 301s Setting up python3-threadpoolctl (3.1.0-1) ... 301s Setting up python3-all (3.13.2-2) ... 301s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 301s Setting up python3-decorator (5.1.1-5) ... 302s Setting up libblas3:arm64 (3.12.1-2) ... 302s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 302s Setting up python3-packaging (24.2-1) ... 302s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 302s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 302s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 302s Setting up python3-pluggy (1.5.0-1) ... 302s Setting up python3-pytest-runner (2.11.1-4) ... 302s Setting up liblapack3:arm64 (3.12.1-2) ... 302s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 302s Setting up python3-pytest (8.3.5-1) ... 303s Setting up python3-numpy (1:2.2.3+ds-5) ... 306s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 306s Setting up python3-scipy (1.14.1-4ubuntu2) ... 310s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 310s Setting up python3-sklearn (1.4.2+dfsg-8) ... 313s Setting up python3-opentsne (1.0.2-1ubuntu4) ... 313s Processing triggers for man-db (2.13.0-1) ... 314s Processing triggers for libc-bin (2.41-1ubuntu1) ... 315s autopkgtest [01:32:15]: test python: [----------------------- 316s + cp -rf tests /tmp/autopkgtest.oYmqUH/autopkgtest_tmp 316s + py3versions --supported 316s Testing with python3.13: 316s + cd /tmp/autopkgtest.oYmqUH/autopkgtest_tmp 316s + echo Testing with python3.13: 316s + python3.13 -m pytest 318s ============================= test session starts ============================== 318s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 318s rootdir: /tmp/autopkgtest.oYmqUH/autopkgtest_tmp 318s plugins: typeguard-4.4.2 318s collected 163 items 318s 319s tests/test_affinities.py ......................... [ 15%] 374s tests/test_correctness.py ......................X... [ 31%] 389s tests/test_different_usages.py ............ [ 38%] 391s tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] 391s ss [ 64%] 393s tests/test_sklearn_wrapper.py ... [ 66%] 400s tests/test_tsne.py ...ss............................................... [ 98%] 400s tests/test_utils.py ... [100%] 400s 400s =============================== warnings summary =============================== 400s tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error 400s /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. 400s warnings.warn( 400s 400s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity 400s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity 400s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances 400s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors 400s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index 400s tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity 400s /usr/lib/python3/dist-packages/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. 400s warnings.warn( 400s 400s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 400s ====== 136 passed, 26 skipped, 1 xpassed, 7 warnings in 83.36s (0:01:23) ======= 400s autopkgtest [01:33:40]: test python: -----------------------] 401s autopkgtest [01:33:41]: test python: - - - - - - - - - - results - - - - - - - - - - 401s python PASS 401s autopkgtest [01:33:41]: @@@@@@@@@@@@@@@@@@@@ summary 401s python PASS 410s nova [W] Using flock in prodstack6-arm64 410s flock: timeout while waiting to get lock 410s Creating nova instance adt-plucky-arm64-opentsne-20250316-012700-juju-7f2275-prod-proposed-migration-environment-15-f8f6ae2f-7828-423f-b2ba-05a4b745914d from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 410s nova [W] Timed out waiting for e7a21daf-7d59-4ac1-8b1b-8afa63d105ad to get deleted.