1s autopkgtest [13:59:34]: starting date and time: 2025-03-15 13:59:34+0000 1s autopkgtest [13:59:34]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 1s autopkgtest [13:59:34]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gxb4x9bz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade opentsne --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-42.secgroup --name adt-plucky-arm64-opentsne-20250315-135931-juju-7f2275-prod-proposed-migration-environment-20-3cdd6661-f958-40a8-a48e-91e8d43be289 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 178s autopkgtest [14:02:31]: testbed dpkg architecture: arm64 178s autopkgtest [14:02:31]: testbed apt version: 2.9.33 178s autopkgtest [14:02:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 179s autopkgtest [14:02:32]: testbed release detected to be: None 180s autopkgtest [14:02:33]: updating testbed package index (apt update) 180s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 181s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 181s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 181s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 181s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 181s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 181s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 182s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 182s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 182s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 182s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 182s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 182s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 182s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 182s Fetched 1094 kB in 2s (599 kB/s) 183s Reading package lists... 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 185s Calculating upgrade... 185s Calculating upgrade... 185s The following packages will be upgraded: 185s python3-jinja2 strace 185s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 608 kB of archives. 185s After this operation, 11.3 kB of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 186s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 187s Fetched 608 kB in 1s (662 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 187s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 187s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 187s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 187s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 187s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 187s Setting up strace (6.13+ds-1ubuntu1) ... 187s Processing triggers for man-db (2.13.0-1) ... 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Solving dependencies... 189s The following packages will be REMOVED: 189s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 189s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 189s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 189s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 190s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 190s After this operation, 267 MB disk space will be freed. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 190s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 190s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 190s Removing libpython3.12t64:arm64 (3.12.9-1) ... 190s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 190s Removing libnsl2:arm64 (1.3.0-3build3) ... 190s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Removing libunwind8:arm64 (1.6.2-3.1) ... 190s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 190s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 192s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 192s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 192s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 192s /etc/kernel/postrm.d/initramfs-tools: 192s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 192s /etc/kernel/postrm.d/zz-flash-kernel: 192s flash-kernel: Kernel 6.11.0-8-generic has been removed. 192s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 193s /etc/kernel/postrm.d/zz-update-grub: 193s Sourcing file `/etc/default/grub' 193s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 193s Generating grub configuration file ... 193s Found linux image: /boot/vmlinuz-6.14.0-10-generic 193s Found initrd image: /boot/initrd.img-6.14.0-10-generic 193s Warning: os-prober will not be executed to detect other bootable partitions. 193s Systems on them will not be added to the GRUB boot configuration. 193s Check GRUB_DISABLE_OS_PROBER documentation entry. 193s Adding boot menu entry for UEFI Firmware Settings ... 193s done 193s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 193s Processing triggers for libc-bin (2.41-1ubuntu1) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 194s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 194s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 194s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 194s autopkgtest [14:02:47]: upgrading testbed (apt dist-upgrade and autopurge) 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 195s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 196s Entering ResolveByKeep 196s 196s Calculating upgrade... 197s The following packages will be upgraded: 197s libc-bin libc-dev-bin libc6 libc6-dev locales 197s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Need to get 9530 kB of archives. 197s After this operation, 0 B of additional disk space will be used. 197s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 199s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 199s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 209s Preconfiguring packages ... 209s Fetched 9530 kB in 12s (796 kB/s) 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 209s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc6:arm64 (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc-bin (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 210s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up locales (2.41-1ubuntu2) ... 211s Generating locales (this might take a while)... 213s en_US.UTF-8... done 213s Generation complete. 213s Setting up libc-dev-bin (2.41-1ubuntu2) ... 213s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 213s Processing triggers for man-db (2.13.0-1) ... 214s Processing triggers for systemd (257.3-1ubuntu3) ... 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 216s Solving dependencies... 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 217s autopkgtest [14:03:10]: rebooting testbed after setup commands that affected boot 241s autopkgtest [14:03:34]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 244s autopkgtest [14:03:37]: @@@@@@@@@@@@@@@@@@@@ apt-source opentsne 272s Get:1 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (dsc) [2377 B] 272s Get:2 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (tar) [22.1 MB] 272s Get:3 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu4 (diff) [5396 B] 272s gpgv: Signature made Tue Mar 4 17:45:11 2025 UTC 272s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 272s gpgv: Can't check signature: No public key 272s dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-1ubuntu4.dsc: no acceptable signature found 272s autopkgtest [14:04:05]: testing package opentsne version 1.0.2-1ubuntu4 273s autopkgtest [14:04:06]: build not needed 275s autopkgtest [14:04:08]: test python: preparing testbed 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 275s Starting pkgProblemResolver with broken count: 0 276s Starting 2 pkgProblemResolver with broken count: 0 276s Done 276s The following NEW packages will be installed: 276s libblas3 libfftw3-double3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 276s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 276s python3-numpy-dev python3-opentsne python3-packaging python3-pluggy 276s python3-pytest python3-pytest-runner python3-scipy python3-sklearn 276s python3-sklearn-lib python3-threadpoolctl 276s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 31.6 MB of archives. 276s After this operation, 139 MB of additional disk space will be used. 276s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 277s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 277s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 278s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 280s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 284s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 285s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 285s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 285s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.2-2 [886 B] 285s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 285s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 285s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 285s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 304s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 304s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-7build2 [4107 kB] 308s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-7build2 [2258 kB] 311s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-opentsne arm64 1.0.2-1ubuntu4 [375 kB] 311s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 311s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 311s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 311s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-runner all 2.11.1-4 [7450 B] 312s Fetched 31.6 MB in 35s (903 kB/s) 312s Selecting previously unselected package python3-numpy-dev:arm64. 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 312s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 312s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 312s Selecting previously unselected package libblas3:arm64. 312s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 312s Unpacking libblas3:arm64 (3.12.1-2) ... 312s Selecting previously unselected package libgfortran5:arm64. 312s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 312s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 312s Selecting previously unselected package liblapack3:arm64. 312s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 312s Unpacking liblapack3:arm64 (3.12.1-2) ... 312s Selecting previously unselected package python3-numpy. 312s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 312s Unpacking python3-numpy (1:2.2.3+ds-5) ... 312s Selecting previously unselected package libgomp1:arm64. 312s Preparing to unpack .../05-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 312s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 313s Selecting previously unselected package libfftw3-double3:arm64. 313s Preparing to unpack .../06-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 313s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 313s Selecting previously unselected package liblbfgsb0:arm64. 313s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 313s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 313s Selecting previously unselected package python3-all. 313s Preparing to unpack .../08-python3-all_3.13.2-2_arm64.deb ... 313s Unpacking python3-all (3.13.2-2) ... 313s Selecting previously unselected package python3-decorator. 313s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 313s Unpacking python3-decorator (5.1.1-5) ... 313s Selecting previously unselected package python3-iniconfig. 313s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 313s Unpacking python3-iniconfig (1.1.1-2) ... 313s Selecting previously unselected package python3-joblib. 313s Preparing to unpack .../11-python3-joblib_1.4.2-3_all.deb ... 313s Unpacking python3-joblib (1.4.2-3) ... 313s Selecting previously unselected package python3-scipy. 313s Preparing to unpack .../12-python3-scipy_1.14.1-4ubuntu2_arm64.deb ... 313s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 313s Selecting previously unselected package python3-threadpoolctl. 313s Preparing to unpack .../13-python3-threadpoolctl_3.1.0-1_all.deb ... 313s Unpacking python3-threadpoolctl (3.1.0-1) ... 313s Selecting previously unselected package python3-sklearn-lib:arm64. 313s Preparing to unpack .../14-python3-sklearn-lib_1.4.2+dfsg-7build2_arm64.deb ... 313s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-7build2) ... 313s Selecting previously unselected package python3-sklearn. 313s Preparing to unpack .../15-python3-sklearn_1.4.2+dfsg-7build2_all.deb ... 313s Unpacking python3-sklearn (1.4.2+dfsg-7build2) ... 313s Selecting previously unselected package python3-opentsne. 313s Preparing to unpack .../16-python3-opentsne_1.0.2-1ubuntu4_arm64.deb ... 313s Unpacking python3-opentsne (1.0.2-1ubuntu4) ... 314s Selecting previously unselected package python3-packaging. 314s Preparing to unpack .../17-python3-packaging_24.2-1_all.deb ... 314s Unpacking python3-packaging (24.2-1) ... 314s Selecting previously unselected package python3-pluggy. 314s Preparing to unpack .../18-python3-pluggy_1.5.0-1_all.deb ... 314s Unpacking python3-pluggy (1.5.0-1) ... 314s Selecting previously unselected package python3-pytest. 314s Preparing to unpack .../19-python3-pytest_8.3.5-1_all.deb ... 314s Unpacking python3-pytest (8.3.5-1) ... 314s Selecting previously unselected package python3-pytest-runner. 314s Preparing to unpack .../20-python3-pytest-runner_2.11.1-4_all.deb ... 314s Unpacking python3-pytest-runner (2.11.1-4) ... 314s Setting up python3-iniconfig (1.1.1-2) ... 314s Setting up python3-joblib (1.4.2-3) ... 314s Setting up python3-threadpoolctl (3.1.0-1) ... 314s Setting up python3-all (3.13.2-2) ... 314s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 314s Setting up python3-decorator (5.1.1-5) ... 314s Setting up libblas3:arm64 (3.12.1-2) ... 314s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 314s Setting up python3-packaging (24.2-1) ... 314s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 314s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 314s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 314s Setting up python3-pluggy (1.5.0-1) ... 315s Setting up python3-pytest-runner (2.11.1-4) ... 315s Setting up liblapack3:arm64 (3.12.1-2) ... 315s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 315s Setting up python3-pytest (8.3.5-1) ... 315s Setting up python3-numpy (1:2.2.3+ds-5) ... 317s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 317s Setting up python3-scipy (1.14.1-4ubuntu2) ... 320s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-7build2) ... 320s Setting up python3-sklearn (1.4.2+dfsg-7build2) ... 322s Setting up python3-opentsne (1.0.2-1ubuntu4) ... 322s Processing triggers for man-db (2.13.0-1) ... 323s Processing triggers for libc-bin (2.41-1ubuntu2) ... 324s autopkgtest [14:04:57]: test python: [----------------------- 324s + cp -rf tests /tmp/autopkgtest.yCV6DN/autopkgtest_tmp 324s + py3versions --supported 324s Testing with python3.13: 324s + cd /tmp/autopkgtest.yCV6DN/autopkgtest_tmp 324s + echo Testing with python3.13: 324s + python3.13 -m pytest 325s ============================= test session starts ============================== 325s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 325s rootdir: /tmp/autopkgtest.yCV6DN/autopkgtest_tmp 325s plugins: typeguard-4.4.2 325s collected 163 items 325s 326s tests/test_affinities.py ......................... [ 15%] 372s tests/test_correctness.py ......................X... [ 31%] 386s tests/test_different_usages.py ............ [ 38%] 388s tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] 388s ss [ 64%] 390s tests/test_sklearn_wrapper.py ... [ 66%] 397s tests/test_tsne.py ...ss............................................... [ 98%] 397s tests/test_utils.py ... [100%] 397s 397s =============================== warnings summary =============================== 397s tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error 397s /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. 397s warnings.warn( 397s 397s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity 397s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity 397s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances 397s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors 397s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index 397s tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity 397s /usr/lib/python3/dist-packages/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. 397s warnings.warn( 397s 397s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 397s ====== 136 passed, 26 skipped, 1 xpassed, 7 warnings in 72.44s (0:01:12) ======= 397s autopkgtest [14:06:10]: test python: -----------------------] 398s python PASS 398s autopkgtest [14:06:11]: test python: - - - - - - - - - - results - - - - - - - - - - 398s autopkgtest [14:06:11]: @@@@@@@@@@@@@@@@@@@@ summary 398s python PASS 415s nova [W] Using flock in prodstack6-arm64 415s flock: timeout while waiting to get lock 415s Creating nova instance adt-plucky-arm64-opentsne-20250315-135931-juju-7f2275-prod-proposed-migration-environment-20-3cdd6661-f958-40a8-a48e-91e8d43be289 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 415s nova [W] Timed out waiting for 9c193867-d0f7-4e3e-a611-ce9f27e0c161 to get deleted.