0s autopkgtest [13:55:14]: starting date and time: 2025-03-15 13:55:14+0000 0s autopkgtest [13:55:14]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:55:14]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bjgtx6rt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-42.secgroup --name adt-plucky-arm64-openbabel-20250315-135513-juju-7f2275-prod-proposed-migration-environment-15-57b533b6-6c28-402d-82d8-f010a2ae9d56 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 188s autopkgtest [13:58:22]: testbed dpkg architecture: arm64 188s autopkgtest [13:58:22]: testbed apt version: 2.9.33 189s autopkgtest [13:58:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 189s autopkgtest [13:58:23]: testbed release detected to be: None 190s autopkgtest [13:58:24]: updating testbed package index (apt update) 190s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 191s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 191s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 191s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 191s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 191s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 191s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 191s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 192s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 192s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 192s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 192s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 192s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 192s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 192s Fetched 1094 kB in 2s (631 kB/s) 193s Reading package lists... 194s + lsb_release --codename --short 194s + RELEASE=plucky 194s + cat 194s + [ plucky != trusty ] 194s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 195s Calculating upgrade... 195s Calculating upgrade... 195s The following packages will be upgraded: 195s python3-jinja2 strace 195s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 195s Need to get 608 kB of archives. 195s After this operation, 11.3 kB of additional disk space will be used. 195s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 197s Fetched 608 kB in 1s (597 kB/s) 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 197s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 197s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 197s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 197s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 197s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 197s Setting up strace (6.13+ds-1ubuntu1) ... 197s Processing triggers for man-db (2.13.0-1) ... 198s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 198s + /usr/lib/apt/apt-helper analyze-pattern ?true 198s + + sed s/\./\\./g 198s uname -r 198s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 198s + apt list ?obsolete 198s + tail -n+2 198s + cut -d/ -f1+ 198s grep -v ^linux-.*6\.14\.0-10-generic.* 198s + obsolete_pkgs=linux-headers-6.11.0-8-generic 198s linux-headers-6.11.0-8 198s linux-image-6.11.0-8-generic 198s linux-modules-6.11.0-8-generic 198s linux-tools-6.11.0-8-generic 198s linux-tools-6.11.0-8 198s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 198s Reading package lists... 199s Building dependency tree... 199s Reading state information... 199s Solving dependencies... 199s The following packages will be REMOVED: 199s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 199s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 199s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 199s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 200s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 200s After this operation, 267 MB disk space will be freed. 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 200s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 200s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 200s Removing libpython3.12t64:arm64 (3.12.9-1) ... 200s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 200s Removing libnsl2:arm64 (1.3.0-3build3) ... 200s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 200s Removing libunwind8:arm64 (1.6.2-3.1) ... 200s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 201s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 202s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 202s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 202s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 202s /etc/kernel/postrm.d/initramfs-tools: 202s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 202s /etc/kernel/postrm.d/zz-flash-kernel: 202s flash-kernel: Kernel 6.11.0-8-generic has been removed. 202s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 203s /etc/kernel/postrm.d/zz-update-grub: 203s Sourcing file `/etc/default/grub' 203s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 203s Generating grub configuration file ... 203s Found linux image: /boot/vmlinuz-6.14.0-10-generic 203s Found initrd image: /boot/initrd.img-6.14.0-10-generic 203s Warning: os-prober will not be executed to detect other bootable partitions. 203s Systems on them will not be added to the GRUB boot configuration. 203s Check GRUB_DISABLE_OS_PROBER documentation entry. 203s Adding boot menu entry for UEFI Firmware Settings ... 203s done 203s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 204s Processing triggers for libc-bin (2.41-1ubuntu1) ... 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 204s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 204s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 204s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 204s + grep -q trusty /etc/lsb-release 204s + [ ! -d /usr/share/doc/unattended-upgrades ] 204s + [ ! -d /usr/share/doc/lxd ] 204s + [ ! -d /usr/share/doc/lxd-client ] 204s + [ ! -d /usr/share/doc/snapd ] 204s + type iptables 204s + cat 204s + chmod 755 /etc/rc.local 204s + . /etc/rc.local 204s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 204s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 204s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 204s + uname -m 204s + [ aarch64 = ppc64le ] 204s + [ -d /run/systemd/system ] 204s + systemd-detect-virt --quiet --vm 204s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 204s + cat 204s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 204s + echo COMPRESS=lz4 204s autopkgtest [13:58:38]: upgrading testbed (apt dist-upgrade and autopurge) 204s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 206s Entering ResolveByKeep 206s 206s Calculating upgrade... 207s The following packages will be upgraded: 207s libc-bin libc-dev-bin libc6 libc6-dev locales 207s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Need to get 9530 kB of archives. 207s After this operation, 0 B of additional disk space will be used. 207s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 209s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 209s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 212s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 213s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 218s Preconfiguring packages ... 218s Fetched 9530 kB in 11s (871 kB/s) 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 218s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 218s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 219s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 219s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 219s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 219s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 219s Setting up libc6:arm64 (2.41-1ubuntu2) ... 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 219s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 219s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 220s Setting up libc-bin (2.41-1ubuntu2) ... 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 220s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 220s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 220s Setting up locales (2.41-1ubuntu2) ... 221s Generating locales (this might take a while)... 223s en_US.UTF-8... done 223s Generation complete. 223s Setting up libc-dev-bin (2.41-1ubuntu2) ... 223s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 223s Processing triggers for man-db (2.13.0-1) ... 224s Processing triggers for systemd (257.3-1ubuntu3) ... 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 226s Solving dependencies... 226s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 227s autopkgtest [13:59:01]: rebooting testbed after setup commands that affected boot 252s autopkgtest [13:59:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 255s autopkgtest [13:59:29]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel 284s Get:1 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (dsc) [2896 B] 284s Get:2 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (tar) [21.8 MB] 284s Get:3 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (diff) [22.1 kB] 284s gpgv: Signature made Fri Jan 3 13:45:31 2025 UTC 284s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 284s gpgv: Can't check signature: No public key 284s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-11ubuntu3.dsc: no acceptable signature found 287s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once 287s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once 287s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once 287s autopkgtest [14:00:01]: testing package openbabel version 3.1.1+dfsg-11ubuntu3 288s autopkgtest [14:00:02]: build not needed 300s autopkgtest [14:00:14]: test python3: preparing testbed 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 301s Done 302s The following NEW packages will be installed: 302s adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service 302s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 302s gtk-update-icon-cache hicolor-icon-theme libatk-bridge2.0-0t64 302s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 302s libavahi-common3 libboost-iostreams1.83.0 libcairo-gobject2 libcairo2 302s libchemistry-openbabel-perl libcolord2 libcups2t64 libdatrie1 libdconf1 302s libdeflate0 libepoxy0 libfontconfig1 libgdk-pixbuf-2.0-0 302s libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0t64 302s libgtk-3-common libharfbuzz0b libice6 libinchi1.07 libjbig0 libjpeg-turbo8 302s libjpeg8 libjs-jquery liblcms2-2 liblerc4 libmaeparser1 libnotify4 302s libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0 302s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 302s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libwayland-client0 302s libwayland-cursor0 libwayland-egl1 libwebp7 libwxbase3.2-1t64 302s libwxgtk3.2-1t64 libxcb-render0 libxcb-shm0 libxcomposite1 libxcursor1 302s libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 libxrender1 libxtst6 302s openbabel openbabel-gui python3-openbabel x11-common 302s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 302s Need to get 28.5 MB of archives. 302s After this operation, 133 MB of additional disk space will be used. 302s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 303s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 303s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 303s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 303s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 303s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 303s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 303s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 303s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 303s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-2 [147 kB] 303s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 gtk-update-icon-cache arm64 4.17.5+ds-3ubuntu1 [52.9 kB] 304s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 hicolor-icon-theme all 0.18-2 [13.3 kB] 304s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 adwaita-icon-theme all 48.0-1 [578 kB] 304s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 at-spi2-common all 2.55.90-1 [9072 B] 304s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdconf1 arm64 0.40.0-5 [40.0 kB] 304s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 dconf-service arm64 0.40.0-5 [27.1 kB] 304s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 dconf-gsettings-backend arm64 0.40.0-5 [22.3 kB] 304s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 305s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 305s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 305s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 305s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 306s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libatk1.0-0t64 arm64 2.55.90-1 [55.3 kB] 306s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 306s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libatspi2.0-0t64 arm64 2.55.90-1 [84.4 kB] 306s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libatk-bridge2.0-0t64 arm64 2.55.90-1 [66.7 kB] 306s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common-data arm64 0.8-16ubuntu1 [30.9 kB] 306s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-common3 arm64 0.8-16ubuntu1 [22.9 kB] 306s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libavahi-client3 arm64 0.8-16ubuntu1 [26.9 kB] 306s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.1ubuntu2 [259 kB] 306s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 306s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 306s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 306s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 306s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 307s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo-gobject2 arm64 1.18.2-2 [127 kB] 307s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 307s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB] 308s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 308s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenbabel7 arm64 3.1.1+dfsg-11ubuntu3 [3183 kB] 311s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libchemistry-openbabel-perl arm64 3.1.1+dfsg-11ubuntu3 [690 kB] 312s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 312s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolord2 arm64 1.4.7-3 [151 kB] 312s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libcups2t64 arm64 2.4.11-0ubuntu2 [274 kB] 312s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 312s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libepoxy0 arm64 1.5.10-2 [236 kB] 313s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 313s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 313s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 313s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 313s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 314s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 314s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 314s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-client0 arm64 1.23.1-3 [27.0 kB] 314s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-cursor0 arm64 1.23.1-3 [10.8 kB] 314s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-egl1 arm64 1.23.1-3 [6180 B] 314s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcomposite1 arm64 1:0.4.6-1 [6626 B] 314s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB] 314s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcursor1 arm64 1:1.2.3-1 [22.2 kB] 314s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libxdamage1 arm64 1:1.1.6-1build1 [6236 B] 314s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxinerama1 arm64 2:1.1.4-3build1 [6394 B] 314s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrandr2 arm64 2:1.5.4-1 [19.6 kB] 314s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 315s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libgtk-3-0t64 arm64 3.24.48-3ubuntu1 [2916 kB] 318s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 318s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 318s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 319s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libnotify4 arm64 0.8.4-1 [26.5 kB] 319s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenbabel-dev arm64 3.1.1+dfsg-11ubuntu3 [181 kB] 319s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenbabel-doc all 3.1.1+dfsg-11ubuntu3 [5611 kB] 325s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 325s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 325s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libwxbase3.2-1t64 arm64 3.2.6+dfsg-2ubuntu1 [870 kB] 326s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxtst6 arm64 2:1.2.5-1 [13.2 kB] 326s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libwxgtk3.2-1t64 arm64 3.2.6+dfsg-2ubuntu1 [4426 kB] 331s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 openbabel arm64 3.1.1+dfsg-11ubuntu3 [125 kB] 331s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 openbabel-gui arm64 3.1.1+dfsg-11ubuntu3 [84.8 kB] 331s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-openbabel arm64 3.1.1+dfsg-11ubuntu3 [607 kB] 332s Fetched 28.5 MB in 29s (969 kB/s) 332s Selecting previously unselected package libgdk-pixbuf2.0-common. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 333s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 333s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 333s Selecting previously unselected package libjpeg-turbo8:arm64. 333s Preparing to unpack .../01-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 333s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 333s Selecting previously unselected package libjpeg8:arm64. 333s Preparing to unpack .../02-libjpeg8_8c-2ubuntu11_arm64.deb ... 333s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 333s Selecting previously unselected package libdeflate0:arm64. 333s Preparing to unpack .../03-libdeflate0_1.23-1_arm64.deb ... 333s Unpacking libdeflate0:arm64 (1.23-1) ... 333s Selecting previously unselected package libjbig0:arm64. 333s Preparing to unpack .../04-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 333s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 333s Selecting previously unselected package liblerc4:arm64. 333s Preparing to unpack .../05-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 333s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 333s Selecting previously unselected package libsharpyuv0:arm64. 333s Preparing to unpack .../06-libsharpyuv0_1.5.0-0.1_arm64.deb ... 333s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 333s Selecting previously unselected package libwebp7:arm64. 333s Preparing to unpack .../07-libwebp7_1.5.0-0.1_arm64.deb ... 333s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 333s Selecting previously unselected package libtiff6:arm64. 333s Preparing to unpack .../08-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 333s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 333s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 333s Preparing to unpack .../09-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_arm64.deb ... 333s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-2) ... 333s Selecting previously unselected package gtk-update-icon-cache. 333s Preparing to unpack .../10-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_arm64.deb ... 333s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 333s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 333s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 333s Selecting previously unselected package hicolor-icon-theme. 333s Preparing to unpack .../11-hicolor-icon-theme_0.18-2_all.deb ... 333s Unpacking hicolor-icon-theme (0.18-2) ... 333s Selecting previously unselected package adwaita-icon-theme. 333s Preparing to unpack .../12-adwaita-icon-theme_48.0-1_all.deb ... 333s Unpacking adwaita-icon-theme (48.0-1) ... 333s Selecting previously unselected package at-spi2-common. 333s Preparing to unpack .../13-at-spi2-common_2.55.90-1_all.deb ... 333s Unpacking at-spi2-common (2.55.90-1) ... 333s Selecting previously unselected package libdconf1:arm64. 333s Preparing to unpack .../14-libdconf1_0.40.0-5_arm64.deb ... 333s Unpacking libdconf1:arm64 (0.40.0-5) ... 333s Selecting previously unselected package dconf-service. 333s Preparing to unpack .../15-dconf-service_0.40.0-5_arm64.deb ... 333s Unpacking dconf-service (0.40.0-5) ... 333s Selecting previously unselected package dconf-gsettings-backend:arm64. 333s Preparing to unpack .../16-dconf-gsettings-backend_0.40.0-5_arm64.deb ... 333s Unpacking dconf-gsettings-backend:arm64 (0.40.0-5) ... 333s Selecting previously unselected package fonts-dejavu-mono. 333s Preparing to unpack .../17-fonts-dejavu-mono_2.37-8_all.deb ... 333s Unpacking fonts-dejavu-mono (2.37-8) ... 333s Selecting previously unselected package fonts-dejavu-core. 333s Preparing to unpack .../18-fonts-dejavu-core_2.37-8_all.deb ... 333s Unpacking fonts-dejavu-core (2.37-8) ... 333s Selecting previously unselected package fontconfig-config. 333s Preparing to unpack .../19-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 334s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 334s Selecting previously unselected package libfontconfig1:arm64. 334s Preparing to unpack .../20-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 334s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 334s Selecting previously unselected package fontconfig. 334s Preparing to unpack .../21-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 334s Unpacking fontconfig (2.15.0-2ubuntu1) ... 334s Selecting previously unselected package libatk1.0-0t64:arm64. 334s Preparing to unpack .../22-libatk1.0-0t64_2.55.90-1_arm64.deb ... 334s Unpacking libatk1.0-0t64:arm64 (2.55.90-1) ... 334s Selecting previously unselected package libxi6:arm64. 334s Preparing to unpack .../23-libxi6_2%3a1.8.2-1_arm64.deb ... 334s Unpacking libxi6:arm64 (2:1.8.2-1) ... 334s Selecting previously unselected package libatspi2.0-0t64:arm64. 334s Preparing to unpack .../24-libatspi2.0-0t64_2.55.90-1_arm64.deb ... 334s Unpacking libatspi2.0-0t64:arm64 (2.55.90-1) ... 334s Selecting previously unselected package libatk-bridge2.0-0t64:arm64. 334s Preparing to unpack .../25-libatk-bridge2.0-0t64_2.55.90-1_arm64.deb ... 334s Unpacking libatk-bridge2.0-0t64:arm64 (2.55.90-1) ... 334s Selecting previously unselected package libavahi-common-data:arm64. 334s Preparing to unpack .../26-libavahi-common-data_0.8-16ubuntu1_arm64.deb ... 334s Unpacking libavahi-common-data:arm64 (0.8-16ubuntu1) ... 334s Selecting previously unselected package libavahi-common3:arm64. 334s Preparing to unpack .../27-libavahi-common3_0.8-16ubuntu1_arm64.deb ... 334s Unpacking libavahi-common3:arm64 (0.8-16ubuntu1) ... 334s Selecting previously unselected package libavahi-client3:arm64. 334s Preparing to unpack .../28-libavahi-client3_0.8-16ubuntu1_arm64.deb ... 334s Unpacking libavahi-client3:arm64 (0.8-16ubuntu1) ... 334s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 334s Preparing to unpack .../29-libboost-iostreams1.83.0_1.83.0-4.1ubuntu2_arm64.deb ... 334s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu2) ... 334s Selecting previously unselected package libpixman-1-0:arm64. 334s Preparing to unpack .../30-libpixman-1-0_0.44.0-3_arm64.deb ... 334s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 334s Selecting previously unselected package libxcb-render0:arm64. 334s Preparing to unpack .../31-libxcb-render0_1.17.0-2_arm64.deb ... 334s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 334s Selecting previously unselected package libxcb-shm0:arm64. 334s Preparing to unpack .../32-libxcb-shm0_1.17.0-2_arm64.deb ... 334s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 334s Selecting previously unselected package libxrender1:arm64. 334s Preparing to unpack .../33-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 334s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 334s Selecting previously unselected package libcairo2:arm64. 334s Preparing to unpack .../34-libcairo2_1.18.2-2_arm64.deb ... 334s Unpacking libcairo2:arm64 (1.18.2-2) ... 334s Selecting previously unselected package libcairo-gobject2:arm64. 334s Preparing to unpack .../35-libcairo-gobject2_1.18.2-2_arm64.deb ... 334s Unpacking libcairo-gobject2:arm64 (1.18.2-2) ... 334s Selecting previously unselected package libgomp1:arm64. 334s Preparing to unpack .../36-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 334s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 334s Selecting previously unselected package libinchi1.07. 334s Preparing to unpack .../37-libinchi1.07_1.07.3+dfsg-1_arm64.deb ... 334s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 334s Selecting previously unselected package libmaeparser1:arm64. 334s Preparing to unpack .../38-libmaeparser1_1.3.1-1build1_arm64.deb ... 334s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 334s Selecting previously unselected package libopenbabel7. 334s Preparing to unpack .../39-libopenbabel7_3.1.1+dfsg-11ubuntu3_arm64.deb ... 334s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 335s Selecting previously unselected package libchemistry-openbabel-perl. 335s Preparing to unpack .../40-libchemistry-openbabel-perl_3.1.1+dfsg-11ubuntu3_arm64.deb ... 335s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 335s Selecting previously unselected package liblcms2-2:arm64. 335s Preparing to unpack .../41-liblcms2-2_2.16-2_arm64.deb ... 335s Unpacking liblcms2-2:arm64 (2.16-2) ... 335s Selecting previously unselected package libcolord2:arm64. 335s Preparing to unpack .../42-libcolord2_1.4.7-3_arm64.deb ... 335s Unpacking libcolord2:arm64 (1.4.7-3) ... 335s Selecting previously unselected package libcups2t64:arm64. 335s Preparing to unpack .../43-libcups2t64_2.4.11-0ubuntu2_arm64.deb ... 335s Unpacking libcups2t64:arm64 (2.4.11-0ubuntu2) ... 335s Selecting previously unselected package libdatrie1:arm64. 335s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_arm64.deb ... 335s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 335s Selecting previously unselected package libepoxy0:arm64. 335s Preparing to unpack .../45-libepoxy0_1.5.10-2_arm64.deb ... 335s Unpacking libepoxy0:arm64 (1.5.10-2) ... 335s Selecting previously unselected package libgraphite2-3:arm64. 335s Preparing to unpack .../46-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 335s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 335s Selecting previously unselected package libharfbuzz0b:arm64. 335s Preparing to unpack .../47-libharfbuzz0b_10.2.0-1_arm64.deb ... 335s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 335s Selecting previously unselected package libthai-data. 335s Preparing to unpack .../48-libthai-data_0.1.29-2build1_all.deb ... 335s Unpacking libthai-data (0.1.29-2build1) ... 335s Selecting previously unselected package libthai0:arm64. 335s Preparing to unpack .../49-libthai0_0.1.29-2build1_arm64.deb ... 335s Unpacking libthai0:arm64 (0.1.29-2build1) ... 335s Selecting previously unselected package libpango-1.0-0:arm64. 335s Preparing to unpack .../50-libpango-1.0-0_1.56.2-1_arm64.deb ... 335s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 335s Selecting previously unselected package libpangoft2-1.0-0:arm64. 335s Preparing to unpack .../51-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 335s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 335s Selecting previously unselected package libpangocairo-1.0-0:arm64. 335s Preparing to unpack .../52-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 335s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 335s Selecting previously unselected package libwayland-client0:arm64. 335s Preparing to unpack .../53-libwayland-client0_1.23.1-3_arm64.deb ... 335s Unpacking libwayland-client0:arm64 (1.23.1-3) ... 335s Selecting previously unselected package libwayland-cursor0:arm64. 335s Preparing to unpack .../54-libwayland-cursor0_1.23.1-3_arm64.deb ... 335s Unpacking libwayland-cursor0:arm64 (1.23.1-3) ... 335s Selecting previously unselected package libwayland-egl1:arm64. 335s Preparing to unpack .../55-libwayland-egl1_1.23.1-3_arm64.deb ... 335s Unpacking libwayland-egl1:arm64 (1.23.1-3) ... 335s Selecting previously unselected package libxcomposite1:arm64. 335s Preparing to unpack .../56-libxcomposite1_1%3a0.4.6-1_arm64.deb ... 335s Unpacking libxcomposite1:arm64 (1:0.4.6-1) ... 335s Selecting previously unselected package libxfixes3:arm64. 335s Preparing to unpack .../57-libxfixes3_1%3a6.0.0-2build1_arm64.deb ... 335s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ... 335s Selecting previously unselected package libxcursor1:arm64. 335s Preparing to unpack .../58-libxcursor1_1%3a1.2.3-1_arm64.deb ... 335s Unpacking libxcursor1:arm64 (1:1.2.3-1) ... 335s Selecting previously unselected package libxdamage1:arm64. 335s Preparing to unpack .../59-libxdamage1_1%3a1.1.6-1build1_arm64.deb ... 335s Unpacking libxdamage1:arm64 (1:1.1.6-1build1) ... 335s Selecting previously unselected package libxinerama1:arm64. 335s Preparing to unpack .../60-libxinerama1_2%3a1.1.4-3build1_arm64.deb ... 335s Unpacking libxinerama1:arm64 (2:1.1.4-3build1) ... 335s Selecting previously unselected package libxrandr2:arm64. 335s Preparing to unpack .../61-libxrandr2_2%3a1.5.4-1_arm64.deb ... 335s Unpacking libxrandr2:arm64 (2:1.5.4-1) ... 335s Selecting previously unselected package libgtk-3-common. 335s Preparing to unpack .../62-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 335s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 335s Selecting previously unselected package libgtk-3-0t64:arm64. 335s Preparing to unpack .../63-libgtk-3-0t64_3.24.48-3ubuntu1_arm64.deb ... 335s Unpacking libgtk-3-0t64:arm64 (3.24.48-3ubuntu1) ... 335s Selecting previously unselected package x11-common. 335s Preparing to unpack .../64-x11-common_1%3a7.7+23ubuntu3_all.deb ... 335s Unpacking x11-common (1:7.7+23ubuntu3) ... 335s Selecting previously unselected package libice6:arm64. 335s Preparing to unpack .../65-libice6_2%3a1.1.1-1_arm64.deb ... 335s Unpacking libice6:arm64 (2:1.1.1-1) ... 336s Selecting previously unselected package libjs-jquery. 336s Preparing to unpack .../66-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 336s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 336s Selecting previously unselected package libnotify4:arm64. 336s Preparing to unpack .../67-libnotify4_0.8.4-1_arm64.deb ... 336s Unpacking libnotify4:arm64 (0.8.4-1) ... 336s Selecting previously unselected package libopenbabel-dev. 336s Preparing to unpack .../68-libopenbabel-dev_3.1.1+dfsg-11ubuntu3_arm64.deb ... 336s Unpacking libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 336s Selecting previously unselected package libopenbabel-doc. 336s Preparing to unpack .../69-libopenbabel-doc_3.1.1+dfsg-11ubuntu3_all.deb ... 336s Unpacking libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 336s Selecting previously unselected package libpcre2-32-0:arm64. 336s Preparing to unpack .../70-libpcre2-32-0_10.45-1_arm64.deb ... 336s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 336s Selecting previously unselected package libsm6:arm64. 336s Preparing to unpack .../71-libsm6_2%3a1.2.4-1_arm64.deb ... 336s Unpacking libsm6:arm64 (2:1.2.4-1) ... 336s Selecting previously unselected package libwxbase3.2-1t64:arm64. 336s Preparing to unpack .../72-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_arm64.deb ... 336s Unpacking libwxbase3.2-1t64:arm64 (3.2.6+dfsg-2ubuntu1) ... 336s Selecting previously unselected package libxtst6:arm64. 336s Preparing to unpack .../73-libxtst6_2%3a1.2.5-1_arm64.deb ... 336s Unpacking libxtst6:arm64 (2:1.2.5-1) ... 336s Selecting previously unselected package libwxgtk3.2-1t64:arm64. 336s Preparing to unpack .../74-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_arm64.deb ... 336s Unpacking libwxgtk3.2-1t64:arm64 (3.2.6+dfsg-2ubuntu1) ... 336s Selecting previously unselected package openbabel. 336s Preparing to unpack .../75-openbabel_3.1.1+dfsg-11ubuntu3_arm64.deb ... 336s Unpacking openbabel (3.1.1+dfsg-11ubuntu3) ... 336s Selecting previously unselected package openbabel-gui. 336s Preparing to unpack .../76-openbabel-gui_3.1.1+dfsg-11ubuntu3_arm64.deb ... 336s Unpacking openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 336s Selecting previously unselected package python3-openbabel. 336s Preparing to unpack .../77-python3-openbabel_3.1.1+dfsg-11ubuntu3_arm64.deb ... 336s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 336s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 336s Setting up liblcms2-2:arm64 (2.16-2) ... 336s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 336s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 336s Setting up libxdamage1:arm64 (1:1.1.6-1build1) ... 336s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 336s Setting up hicolor-icon-theme (0.18-2) ... 336s Setting up libxi6:arm64 (2:1.8.2-1) ... 336s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 336s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 336s Setting up libxcb-render0:arm64 (1.17.0-2) ... 336s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 336s Setting up x11-common (1:7.7+23ubuntu3) ... 337s Setting up libdeflate0:arm64 (1.23-1) ... 337s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 337s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 337s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 337s Setting up libcolord2:arm64 (1.4.7-3) ... 337s Setting up libdconf1:arm64 (0.40.0-5) ... 337s Setting up libpcre2-32-0:arm64 (10.45-1) ... 337s Setting up libepoxy0:arm64 (1.5.10-2) ... 337s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ... 337s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu2) ... 337s Setting up libavahi-common-data:arm64 (0.8-16ubuntu1) ... 337s Setting up libatspi2.0-0t64:arm64 (2.55.90-1) ... 337s Setting up libxinerama1:arm64 (2:1.1.4-3build1) ... 337s Setting up fonts-dejavu-mono (2.37-8) ... 337s Setting up libxrandr2:arm64 (2:1.5.4-1) ... 337s Setting up fonts-dejavu-core (2.37-8) ... 337s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 337s Setting up libwebp7:arm64 (1.5.0-0.1) ... 337s Setting up at-spi2-common (2.55.90-1) ... 337s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 337s Setting up libthai-data (0.1.29-2build1) ... 337s Setting up libwayland-egl1:arm64 (1.23.1-3) ... 337s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 337s Setting up libwxbase3.2-1t64:arm64 (3.2.6+dfsg-2ubuntu1) ... 337s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 337s Setting up libxcomposite1:arm64 (1:0.4.6-1) ... 337s Setting up libwayland-client0:arm64 (1.23.1-3) ... 337s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 337s Setting up libice6:arm64 (2:1.1.1-1) ... 337s Setting up libatk1.0-0t64:arm64 (2.55.90-1) ... 337s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 337s Setting up libxtst6:arm64 (2:1.2.5-1) ... 337s Setting up libxcursor1:arm64 (1:1.2.3-1) ... 337s Setting up libavahi-common3:arm64 (0.8-16ubuntu1) ... 337s Setting up dconf-service (0.40.0-5) ... 337s Setting up libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 337s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 337s Setting up libthai0:arm64 (0.1.29-2build1) ... 337s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 337s Setting up libwayland-cursor0:arm64 (1.23.1-3) ... 337s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-2) ... 337s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 337s Setting up libsm6:arm64 (2:1.2.4-1) ... 337s Setting up libavahi-client3:arm64 (0.8-16ubuntu1) ... 337s Setting up libatk-bridge2.0-0t64:arm64 (2.55.90-1) ... 337s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 337s Setting up fontconfig (2.15.0-2ubuntu1) ... 339s Regenerating fonts cache... done. 339s Setting up dconf-gsettings-backend:arm64 (0.40.0-5) ... 339s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 339s Setting up libcairo2:arm64 (1.18.2-2) ... 339s Setting up adwaita-icon-theme (48.0-1) ... 339s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 339s Setting up libnotify4:arm64 (0.8.4-1) ... 339s Setting up libcairo-gobject2:arm64 (1.18.2-2) ... 339s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 339s Setting up libcups2t64:arm64 (2.4.11-0ubuntu2) ... 339s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 339s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 339s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 339s Setting up libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 339s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 339s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 339s Setting up openbabel (3.1.1+dfsg-11ubuntu3) ... 339s Processing triggers for libc-bin (2.41-1ubuntu2) ... 339s Processing triggers for man-db (2.13.0-1) ... 341s Processing triggers for libglib2.0-0t64:arm64 (2.84.0-1) ... 341s Setting up libgtk-3-0t64:arm64 (3.24.48-3ubuntu1) ... 341s Setting up libwxgtk3.2-1t64:arm64 (3.2.6+dfsg-2ubuntu1) ... 341s Setting up openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 341s Processing triggers for libc-bin (2.41-1ubuntu2) ... 344s autopkgtest [14:00:58]: test python3: [----------------------- 344s Running test/testRInChI.py ... 344s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testRInChI.py:7: SyntaxWarning: invalid escape sequence '\P' 344s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 344s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 344s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 344s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 344s pat = "(-?\d.*) molecule(?:s?) converted" 345s .. 345s ---------------------------------------------------------------------- 345s Ran 2 tests in 0.887s 345s 345s OK 345s Running test/test_pybel.py ... 345s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/test_pybel.py:5: SyntaxWarning: invalid escape sequence '\P' 345s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 345s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 345s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 345s .........................============================== 345s *** Open Babel Warning in WriteMolecule 345s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 345s .....============================== 345s *** Open Babel Error in SMARTSError 345s SMARTS Error: 345s [#NOEL][#NOEL] 345s ^ 345s 345s .... 345s ---------------------------------------------------------------------- 345s Ran 34 tests in 0.288s 345s 345s OK 345s Running test/testbabel.py ... 345s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 345s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 345s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 345s pat = "(-?\d.*) molecule(?:s?) converted" 347s ......./usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 347s self.stdin = io.open(p2cwrite, 'wb', bufsize) 347s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 347s self.stdout = io.open(c2pread, 'rb', bufsize) 347s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 347s self.stderr = io.open(errread, 'rb', bufsize) 348s ...... 348s ---------------------------------------------------------------------- 348s Ran 13 tests in 3.099s 348s 348s OK 348s Running test/testbindings.py ... 348s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 348s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 349s ...============================== 349s *** Open Babel Warning in WriteMolecule 349s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 349s ....============================== 349s *** Open Babel Warning in ParseSmiles 349s Too many greater-than signs in SMILES string 349s 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Too many greater-than signs in SMILES string 349s 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Too many greater-than signs in SMILES string 349s 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 349s ..============================== 349s *** Open Babel Warning in IsValid 349s The molecule is not marked as a reaction. Use SetIsReaction(). 349s ============================== 349s *** Open Babel Warning in IsValid 349s Reaction roles should be in the range 0 to 3 inclusive. 349s ============================== 349s *** Open Babel Warning in IsValid 349s Reaction component Ids should all be non-zero positive integers. 349s ============================== 349s *** Open Babel Warning in IsValid 349s The molecule contains an atom that is missing a reaction component Id. Use SetComponentId(). 349s ============================== 349s *** Open Babel Warning in IsValid 349s A reaction component Id has been stored using a data type that is not an OBPairInteger. 349s ============================== 349s *** Open Babel Warning in IsValid 349s The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value. 349s ============================== 349s *** Open Babel Warning in IsValid 349s The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role. 349s ...........============================== 349s *** Open Babel Warning in ReadMolecule 349s WARNING: Problem interpreting the valence field of an atom 349s The valence field specifies a valence 0 that is 349s less than the observed explicit valence 1. 349s 349s .============================== 349s *** Open Babel Warning in WriteMolecule 349s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 349s ..........============================== 349s *** Open Babel Error in ParseComplex 349s SMILES string contains a character '#' which is invalid 349s ============================== 349s *** Open Babel Error in ParseComplex 349s Element number must be <= 255) 349s ============================== 349s *** Open Babel Error in ParseComplex 349s SMILES string contains a character '#' which is invalid 349s ..============================== 349s *** Open Babel Warning in ParseRingBond 349s Warning: Tetrahedral stereo specified for atom with more than 4 connections. 349s ============================== 349s *** Open Babel Warning in ParseSmiles 349s Failed to kekulize aromatic SMILES 349s 400s ...Ignoring test/testbindings.py on arm64 ... 400s Running test/testcdjsonformat.py ... 400s /tmp/autopkgtest.v7d7ib/build.mGH/src/debian/tests/python3: line 9: 2760 Killed python3 ${TEST} 400s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testcdjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 400s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 401s ..Running test/testdistgeom.py ... 401s ........ 401s ---------------------------------------------------------------------- 401s Ran 10 tests in 0.011s 401s 401s OK 401s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testdistgeom.py:7: SyntaxWarning: invalid escape sequence '\P' 401s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 401s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 401s self.stdin = io.open(p2cwrite, 'wb', bufsize) 401s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 401s self.stdout = io.open(c2pread, 'rb', bufsize) 401s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 401s self.stderr = io.open(errread, 'rb', bufsize) 469s Running test/testexample.py ... 469s . 469s ---------------------------------------------------------------------- 469s Ran 1 test in 69.032s 469s 469s OK 469s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testexample.py:5: SyntaxWarning: invalid escape sequence '\P' 469s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 469s .. 469s ---------------------------------------------------------------------- 469s Ran 2 tests in 0.001s 469s 469s OK 469s Running test/testfastsearch.py ... 469s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testfastsearch.py:7: SyntaxWarning: invalid escape sequence '\P' 469s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 469s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testfastsearch.py:33: SyntaxWarning: invalid escape sequence '\C' 469s C1(/[CH]2[CH]3\C(=C4/CC(C)(C)NC(C4)(C)C)C=C[CH]3[CH]1C=C2)=C1/CC(C)(C)NC(C1)(C)C 469s . 469s ---------------------------------------------------------------------- 469s Ran 1 test in 0.063s 469s 469s OK 470s Running test/testkekule.py ... 470s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testkekule.py:7: SyntaxWarning: invalid escape sequence '\P' 470s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 470s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 470s self.stdin = io.open(p2cwrite, 'wb', bufsize) 470s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 470s self.stdout = io.open(c2pread, 'rb', bufsize) 470s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 470s self.stderr = io.open(errread, 'rb', bufsize) 470s ... 470s ---------------------------------------------------------------------- 470s Ran 3 tests in 0.471s 470s 470s OK 470s Running test/testobconv_writers.py ... 470s ..........................................................................................F.................................................. 470s ====================================================================== 470s FAIL: test_default (__main__.TestPCJSON.test_default) 470s ---------------------------------------------------------------------- 470s Traceback (most recent call last): 470s File "/tmp/autopkgtest.v7d7ib/build.mGH/src/test/testobconv_writers.py", line 2761, in test_default 470s self.assertWriters(self.fmt, """\ 470s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^ 470s { 470s ^ 470s ...<165 lines>... 470s ] 470s ^ 470s }""") 470s ^^^^^ 470s File "/tmp/autopkgtest.v7d7ib/build.mGH/src/test/testobconv_writers.py", line 258, in assertWriters 470s test_write_string(self, mol, conv, expected_output, normalize) 470s ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 470s File "/tmp/autopkgtest.v7d7ib/build.mGH/src/test/testobconv_writers.py", line 165, in test_write_string 470s test_case.assertMultiLineEqual(output.replace("\r\n", "\n"), expected_output.replace("\r\n", "\n")) 470s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 470s AssertionError: '{\n [1926 chars]102014\n ],\n "y": [[1070 chars]]\n}' != '{\n [1926 chars]102012\n ],\n "y": [[1070 chars]]\n}' 470s { 470s "PC_Compounds": [ 470s { 470s "atoms": { 470s "aids": [ 470s 1, 470s 2, 470s 3, 470s 4, 470s 5, 470s 6, 470s 7, 470s 8, 470s 9, 470s 10, 470s 11, 470s 12, 470s 13 470s ], 470s "element": [ 470s 6, 470s 6, 470s 6, 470s 6, 470s 6, 470s 6, 470s 8, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1 470s ] 470s }, 470s "bonds": { 470s "aid1": [ 470s 1, 470s 1, 470s 2, 470s 3, 470s 4, 470s 5, 470s 6, 470s 1, 470s 2, 470s 3, 470s 4, 470s 5, 470s 7 470s ], 470s "aid2": [ 470s 6, 470s 2, 470s 3, 470s 4, 470s 5, 470s 6, 470s 7, 470s 8, 470s 9, 470s 10, 470s 11, 470s 12, 470s 13 470s ], 470s "order": [ 470s 2, 470s 1, 470s 2, 470s 1, 470s 2, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1, 470s 1 470s ] 470s }, 470s "coords": [ 470s { 470s "type": [ 470s 1 470s ], 470s "aids": [ 470s 1, 470s 2, 470s 3, 470s 4, 470s 5, 470s 6, 470s 7, 470s 8, 470s 9, 470s 10, 470s 11, 470s 12, 470s 13 470s ], 470s "conformers": [ 470s { 470s "x": [ 470s 1.5846, 470s 1.5703, 470s 2.4295, 470s 3.3031, 470s 3.3175, 470s 0.0, 470s -1.0005, 470s 2.313816216007316, 470s 0.669250157347277, 470s 2.4146659588503769, 470s 4.189331679349326, 470s 4.052466878708012, 470s - -1.4648575597102014 470s ? ^ 470s + -1.4648575597102012 470s ? ^ 470s ], 470s "y": [ 470s 1.5846, 470s 1.5703, 470s 2.4295, 470s 3.3031, 470s 3.3175, 470s 0.0, 470s -1.0005, 470s 2.313816216007316, 470s 0.669250157347277, 470s 2.4146659588503769, 470s 4.189331679349326, 470s 4.052466878708012, 470s - -1.4648575597102014 470s ? ^ 470s + -1.4648575597102012 470s ? ^ 470s ], 470s "style": { 470s "annotation": [ 470s 8, 470s 8, 470s 8, 470s 8, 470s 8, 470s 8 470s ], 470s "aid1": [ 470s 1, 470s 1, 470s 2, 470s 3, 470s 4, 470s 5 470s ], 470s "aid2": [ 470s 6, 470s 2, 470s 3, 470s 4, 470s 5, 470s 6 470s ] 470s } 470s } 470s ] 470s } 470s ], 470s "charge": 0 470s } 470s ] 470s } 470s 470s 470s ---------------------------------------------------------------------- 470s Ran 141 tests in 0.154s 470s 470s FAILED (failures=1) 470s Ignoring test/testobconv_writers.py on arm64 ... 470s Running test/testpcjsonformat.py ... 470s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testpcjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 470s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 470s ................. 470s ---------------------------------------------------------------------- 470s Ran 17 tests in 0.019s 470s 470s OK 470s Running test/testpdbformat.py ... 470s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testpdbformat.py:7: SyntaxWarning: invalid escape sequence '\P' 470s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 471s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stdin = io.open(p2cwrite, 'wb', bufsize) 471s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stdout = io.open(c2pread, 'rb', bufsize) 471s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stderr = io.open(errread, 'rb', bufsize) 471s . 471s ---------------------------------------------------------------------- 471s Ran 1 test in 0.022s 471s 471s OK 471s Skipping test/testroundtrip.py ... 471s Running test/testsmartssym.py ... 471s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testsmartssym.py:7: SyntaxWarning: invalid escape sequence '\P' 471s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 471s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stdin = io.open(p2cwrite, 'wb', bufsize) 471s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stdout = io.open(c2pread, 'rb', bufsize) 471s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 471s self.stderr = io.open(errread, 'rb', bufsize) 471s .... 471s ---------------------------------------------------------------------- 471s Ran 4 tests in 0.842s 471s 471s OK 471s Skipping test/testsym.py ... 471s Running test/testunique.py ... 471s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testunique.py:7: SyntaxWarning: invalid escape sequence '\P' 471s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 471s /tmp/autopkgtest.v7d7ib/build.mGH/src/test/testunique.py:34: SyntaxWarning: invalid escape sequence '\F' 471s F/C=C\F cis-difluoroethene 472s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 472s self.stdin = io.open(p2cwrite, 'wb', bufsize) 472s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 472s self.stdout = io.open(c2pread, 'rb', bufsize) 472s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 472s self.stderr = io.open(errread, 'rb', bufsize) 472s . 472s ---------------------------------------------------------------------- 472s Ran 1 test in 0.210s 472s 472s OK 472s autopkgtest [14:03:06]: test python3: -----------------------] 473s autopkgtest [14:03:07]: test python3: - - - - - - - - - - results - - - - - - - - - - 473s python3 PASS 473s autopkgtest [14:03:07]: @@@@@@@@@@@@@@@@@@@@ summary 473s python3 PASS 479s nova [W] Using flock in prodstack6-arm64 479s Creating nova instance adt-plucky-arm64-openbabel-20250315-135513-juju-7f2275-prod-proposed-migration-environment-15-57b533b6-6c28-402d-82d8-f010a2ae9d56 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 479s nova [W] Timed out waiting for f3586b8f-42c1-48cb-ad31-7d26d6b49c5d to get deleted.