0s autopkgtest [13:40:37]: starting date and time: 2025-03-15 13:40:37+0000 0s autopkgtest [13:40:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:40:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k6s_1z1b/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade nxtrim --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-41.secgroup --name adt-plucky-arm64-nxtrim-20250315-134037-juju-7f2275-prod-proposed-migration-environment-2-80fc9487-61d5-496b-ad03-ed069a907917 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 175s autopkgtest [13:43:32]: testbed dpkg architecture: arm64 176s autopkgtest [13:43:33]: testbed apt version: 2.9.33 176s autopkgtest [13:43:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 176s autopkgtest [13:43:33]: testbed release detected to be: None 177s autopkgtest [13:43:34]: updating testbed package index (apt update) 177s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 178s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 178s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 178s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 178s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 178s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 178s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 179s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 179s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 179s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 179s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 179s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 179s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 179s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 180s Fetched 1094 kB in 2s (593 kB/s) 181s Reading package lists... 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Calculating upgrade... 184s Calculating upgrade... 184s The following packages will be upgraded: 184s python3-jinja2 strace 184s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 608 kB of archives. 184s After this operation, 11.3 kB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 186s Fetched 608 kB in 1s (587 kB/s) 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 186s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 186s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 186s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 186s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 186s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 187s Setting up strace (6.13+ds-1ubuntu1) ... 187s Processing triggers for man-db (2.13.0-1) ... 187s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Solving dependencies... 189s The following packages will be REMOVED: 189s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 189s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 189s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 189s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 190s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 190s After this operation, 267 MB disk space will be freed. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 190s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 190s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 190s Removing libpython3.12t64:arm64 (3.12.9-1) ... 190s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 190s Removing libnsl2:arm64 (1.3.0-3build3) ... 190s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Removing libunwind8:arm64 (1.6.2-3.1) ... 190s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 192s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 192s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 192s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 192s /etc/kernel/postrm.d/initramfs-tools: 192s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 193s /etc/kernel/postrm.d/zz-flash-kernel: 193s flash-kernel: Kernel 6.11.0-8-generic has been removed. 193s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 193s /etc/kernel/postrm.d/zz-update-grub: 193s Sourcing file `/etc/default/grub' 193s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 193s Generating grub configuration file ... 193s Found linux image: /boot/vmlinuz-6.14.0-10-generic 193s Found initrd image: /boot/initrd.img-6.14.0-10-generic 193s Warning: os-prober will not be executed to detect other bootable partitions. 193s Systems on them will not be added to the GRUB boot configuration. 193s Check GRUB_DISABLE_OS_PROBER documentation entry. 193s Adding boot menu entry for UEFI Firmware Settings ... 193s done 193s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 194s Processing triggers for libc-bin (2.41-1ubuntu1) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 194s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 194s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 194s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 194s autopkgtest [13:43:51]: upgrading testbed (apt dist-upgrade and autopurge) 194s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 196s Entering ResolveByKeep 196s 197s Calculating upgrade... 197s The following packages will be upgraded: 197s libc-bin libc-dev-bin libc6 libc6-dev locales 197s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Need to get 9530 kB of archives. 197s After this operation, 0 B of additional disk space will be used. 197s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 199s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 199s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 203s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 209s Preconfiguring packages ... 209s Fetched 9530 kB in 12s (821 kB/s) 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 209s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc6:arm64 (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc-bin (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 210s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up locales (2.41-1ubuntu2) ... 211s Generating locales (this might take a while)... 213s en_US.UTF-8... done 213s Generation complete. 213s Setting up libc-dev-bin (2.41-1ubuntu2) ... 213s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 213s Processing triggers for man-db (2.13.0-1) ... 214s Processing triggers for systemd (257.3-1ubuntu3) ... 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 216s Solving dependencies... 217s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 217s autopkgtest [13:44:14]: rebooting testbed after setup commands that affected boot 240s autopkgtest [13:44:37]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 242s autopkgtest [13:44:39]: @@@@@@@@@@@@@@@@@@@@ apt-source nxtrim 244s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nxtrim 0.4.3+dfsg-4 (dsc) [1983 B] 244s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nxtrim 0.4.3+dfsg-4 (tar) [65.9 kB] 244s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nxtrim 0.4.3+dfsg-4 (diff) [5092 B] 245s gpgv: Signature made Fri Dec 20 21:13:49 2024 UTC 245s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 245s gpgv: issuer "tille@debian.org" 245s gpgv: Can't check signature: No public key 245s dpkg-source: warning: cannot verify inline signature for ./nxtrim_0.4.3+dfsg-4.dsc: no acceptable signature found 245s autopkgtest [13:44:42]: testing package nxtrim version 0.4.3+dfsg-4 245s autopkgtest [13:44:42]: build not needed 245s autopkgtest [13:44:42]: test run-unit-test: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Starting pkgProblemResolver with broken count: 0 246s Starting 2 pkgProblemResolver with broken count: 0 246s Done 247s The following NEW packages will be installed: 247s nxtrim 247s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 30.8 kB of archives. 247s After this operation, 89.1 kB of additional disk space will be used. 247s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 nxtrim arm64 0.4.3+dfsg-4 [30.8 kB] 248s Fetched 30.8 kB in 0s (114 kB/s) 248s Selecting previously unselected package nxtrim. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 248s Preparing to unpack .../nxtrim_0.4.3+dfsg-4_arm64.deb ... 248s Unpacking nxtrim (0.4.3+dfsg-4) ... 248s Setting up nxtrim (0.4.3+dfsg-4) ... 248s Processing triggers for man-db (2.13.0-1) ... 250s autopkgtest [13:44:47]: test run-unit-test: [----------------------- 250s + nxtrim -1 example/ENA_R1.fastq.gz -2 example/ENA_R2.fastq.gz --out example/ENA 250s Output: example/ENA.*.fastq.gz 250s Trimming: 250s R1: example/ENA_R1.fastq.gz 250s R2: example/ENA_R2.fastq.gz 250s 250s Trimming summary: 250s 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 250s 1 remaining reads were trimmed 250s 250s 0 / 1 ( 0.00% ) read pairs had MP orientation 250s 1 / 1 ( 100.00% ) read pairs had PE orientation 250s 0 / 1 ( 0.00% ) read pairs had unknown orientation 250s 0 / 1 ( 0.00% ) were single end reads 250s 250s 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/example11_R1.fastq.gz -2 example/example11_R2.fastq.gz --out example/example11 250s Output: example/example11.*.fastq.gz 250s Trimming: 250s R1: example/example11_R1.fastq.gz 250s R2: example/example11_R2.fastq.gz 250s WARNING: reads with differing lengths. Has this data already been processed with nxtrim? 250s 250s Trimming summary: 250s 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 250s 1 remaining reads were trimmed 250s 250s 0 / 1 ( 0.00% ) read pairs had MP orientation 250s 0 / 1 ( 0.00% ) read pairs had PE orientation 250s 1 / 1 ( 100.00% ) read pairs had unknown orientation 250s 0 / 1 ( 0.00% ) were single end reads 250s 250s 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/EXTERNAL_R1.fastq.gz -2 example/EXTERNAL_R2.fastq.gz --out example/EXTERNAL 250s Output: example/EXTERNAL.*.fastq.gz 250s Trimming: 250s R1: example/EXTERNAL_R1.fastq.gz 250s R2: example/EXTERNAL_R2.fastq.gz 250s 250s Trimming summary: 250s 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 250s 1 remaining reads were trimmed 250s 250s 0 / 1 ( 0.00% ) read pairs had MP orientation 250s 1 / 1 ( 100.00% ) read pairs had PE orientation 250s 0 / 1 ( 0.00% ) read pairs had unknown orientation 250s 0 / 1 ( 0.00% ) were single end reads 250s 250s 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/FailPF_R1.fastq.gz -2 example/FailPF_R2.fastq.gz --out example/FailPF 250s Output: example/FailPF.*.fastq.gz 250s Trimming: 250s R1: example/FailPF_R1.fastq.gz 250s R2: example/FailPF_R2.fastq.gz 250s 250s Trimming summary: 250s 0 / 1 ( 0.00% ) reads passed chastity/purity filters. 250s 0 / 0 ( nan% ) reads had multiple copies of adapter (filtered). 250s 0 / 0 ( nan% ) read pairs were ignored because template length appeared less than read length 250s 0 remaining reads were trimmed 250s 250s 0 / 0 ( nan% ) read pairs had MP orientation 250s 0 / 0 ( nan% ) read pairs had PE orientation 250s 0 / 0 ( nan% ) read pairs had unknown orientation 250s 0 / 0 ( nan% ) were single end reads 250s 250s 0 / 0 ( nan% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/MP_R1.fastq.gz -2 example/MP_R2.fastq.gz --out example/MP 250s Output: example/MP.*.fastq.gz 250s Trimming: 250s R1: example/MP_R1.fastq.gz 250s R2: example/MP_R2.fastq.gz 250s 250s Trimming summary: 250s 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 250s 54 remaining reads were trimmed 250s 250s 54 / 54 ( 100.00% ) read pairs had MP orientation 250s 0 / 54 ( 0.00% ) read pairs had PE orientation 250s 0 / 54 ( 0.00% ) read pairs had unknown orientation 250s 0 / 54 ( 0.00% ) were single end reads 250s 250s 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/PE_R1.fastq.gz -2 example/PE_R2.fastq.gz --out example/PE 250s Output: example/PE.*.fastq.gz 250s Trimming: 250s R1: example/PE_R1.fastq.gz 250s R2: example/PE_R2.fastq.gz 250s 250s Trimming summary: 250s 55 / 55 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 55 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 1 / 55 ( 1.82% ) read pairs were ignored because template length appeared less than read length 250s 54 remaining reads were trimmed 250s 250s 0 / 54 ( 0.00% ) read pairs had MP orientation 250s 54 / 54 ( 100.00% ) read pairs had PE orientation 250s 0 / 54 ( 0.00% ) read pairs had unknown orientation 250s 0 / 54 ( 0.00% ) were single end reads 250s 250s 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/sample_R1.fastq.gz -2 example/sample_R2.fastq.gz --out example/sample 250s Output: example/sample.*.fastq.gz 250s Trimming: 250s R1: example/sample_R1.fastq.gz 250s R2: example/sample_R2.fastq.gz 250s 250s Trimming summary: 250s 163 / 163 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 163 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 1 / 163 ( 0.61% ) read pairs were ignored because template length appeared less than read length 250s 162 remaining reads were trimmed 250s 250s 54 / 162 ( 33.33% ) read pairs had MP orientation 250s 54 / 162 ( 33.33% ) read pairs had PE orientation 250s 54 / 162 ( 33.33% ) read pairs had unknown orientation 250s 0 / 162 ( 0.00% ) were single end reads 250s 250s 0 / 162 ( 0.00% ) extra single end reads were generated from overhangs 250s + nxtrim -1 example/UNKNOWN_R1.fastq.gz -2 example/UNKNOWN_R2.fastq.gz --out example/UNKNOWN 250s Output: example/UNKNOWN.*.fastq.gz 250s Trimming: 250s R1: example/UNKNOWN_R1.fastq.gz 250s R2: example/UNKNOWN_R2.fastq.gz 250s 250s Trimming summary: 250s 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 250s 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 250s 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 250s 54 remaining reads were trimmed 250s 250s 0 / 54 ( 0.00% ) read pairs had MP orientation 250s 0 / 54 ( 0.00% ) read pairs had PE orientation 250s 54 / 54 ( 100.00% ) read pairs had unknown orientation 250s 0 / 54 ( 0.00% ) were single end reads 250s 250s 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs 251s autopkgtest [13:44:48]: test run-unit-test: -----------------------] 251s run-unit-test PASS 251s autopkgtest [13:44:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 252s autopkgtest [13:44:49]: @@@@@@@@@@@@@@@@@@@@ summary 252s run-unit-test PASS 270s nova [W] Using flock in prodstack6-arm64 270s Creating nova instance adt-plucky-arm64-nxtrim-20250315-134037-juju-7f2275-prod-proposed-migration-environment-2-80fc9487-61d5-496b-ad03-ed069a907917 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 270s nova [W] Timed out waiting for 9da7fa16-448d-4696-8b05-fbcf9dfb5d6e to get deleted.