0s autopkgtest [23:42:54]: starting date and time: 2025-03-15 23:42:54+0000 0s autopkgtest [23:42:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [23:42:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.uv0l_5ss/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade nwchem --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-plucky-arm64-nwchem-20250315-234254-juju-7f2275-prod-proposed-migration-environment-2-83c9e6bc-686f-4f5d-8cad-750d13384ef9 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [23:44:27]: testbed dpkg architecture: arm64 93s autopkgtest [23:44:27]: testbed apt version: 2.9.33 94s autopkgtest [23:44:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s autopkgtest [23:44:28]: testbed release detected to be: None 95s autopkgtest [23:44:29]: updating testbed package index (apt update) 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 96s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 96s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [73.9 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1820 B] 96s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 96s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [344 kB] 96s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.0 kB] 96s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [14.9 kB] 96s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 96s Fetched 1002 kB in 1s (1104 kB/s) 97s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 98s Calculating upgrade... 99s The following packages will be upgraded: 99s pinentry-curses python3-jinja2 strace 99s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 647 kB of archives. 99s After this operation, 11.3 kB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 99s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 99s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 100s Fetched 647 kB in 1s (1056 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 100s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 100s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 100s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 100s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 100s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 100s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 100s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 100s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 100s Setting up strace (6.13+ds-1ubuntu1) ... 100s Processing triggers for man-db (2.13.0-1) ... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Solving dependencies... 102s The following packages will be REMOVED: 102s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 102s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 102s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 102s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 103s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 103s After this operation, 267 MB disk space will be freed. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 103s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 103s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 103s Removing libpython3.12t64:arm64 (3.12.9-1) ... 103s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 103s Removing libnsl2:arm64 (1.3.0-3build3) ... 103s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 103s Removing libunwind8:arm64 (1.6.2-3.1) ... 103s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 103s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 105s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 105s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 105s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 105s /etc/kernel/postrm.d/initramfs-tools: 105s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 105s /etc/kernel/postrm.d/zz-flash-kernel: 105s flash-kernel: Kernel 6.11.0-8-generic has been removed. 105s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 105s /etc/kernel/postrm.d/zz-update-grub: 105s Sourcing file `/etc/default/grub' 105s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 105s Generating grub configuration file ... 106s Found linux image: /boot/vmlinuz-6.14.0-10-generic 106s Found initrd image: /boot/initrd.img-6.14.0-10-generic 106s Warning: os-prober will not be executed to detect other bootable partitions. 106s Systems on them will not be added to the GRUB boot configuration. 106s Check GRUB_DISABLE_OS_PROBER documentation entry. 106s Adding boot menu entry for UEFI Firmware Settings ... 106s done 106s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 106s Processing triggers for libc-bin (2.41-1ubuntu1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 106s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 106s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 106s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 107s autopkgtest [23:44:41]: upgrading testbed (apt dist-upgrade and autopurge) 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s Entering ResolveByKeep 109s 109s Calculating upgrade... 109s The following packages will be upgraded: 109s libc-bin libc-dev-bin libc6 libc6-dev locales 109s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 9530 kB of archives. 109s After this operation, 0 B of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 111s Preconfiguring packages ... 111s Fetched 9530 kB in 2s (5763 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 111s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 111s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 112s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 112s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc6:arm64 (2.41-1ubuntu2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 112s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 112s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc-bin (2.41-1ubuntu2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 112s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 112s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up locales (2.41-1ubuntu2) ... 113s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up libc-dev-bin (2.41-1ubuntu2) ... 115s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 115s Processing triggers for man-db (2.13.0-1) ... 116s Processing triggers for systemd (257.3-1ubuntu3) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 118s Solving dependencies... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [23:44:52]: rebooting testbed after setup commands that affected boot 142s autopkgtest [23:45:16]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 144s autopkgtest [23:45:18]: @@@@@@@@@@@@@@@@@@@@ apt-source nwchem 154s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.3-7build1 (dsc) [2834 B] 154s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.3-7build1 (tar) [168 MB] 154s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.3-7build1 (diff) [560 kB] 155s gpgv: Signature made Fri Jan 3 11:06:21 2025 UTC 155s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 155s gpgv: Can't check signature: No public key 155s dpkg-source: warning: cannot verify inline signature for ./nwchem_7.2.3-7build1.dsc: no acceptable signature found 197s autopkgtest [23:46:11]: testing package nwchem version 7.2.3-7build1 199s autopkgtest [23:46:13]: build not needed 271s autopkgtest [23:47:25]: test testsuite.sh: preparing testbed 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s Starting pkgProblemResolver with broken count: 0 272s Starting 2 pkgProblemResolver with broken count: 0 272s Done 273s The following NEW packages will be installed: 273s libamd-comgr2 libamdhip64-5 libblas3 libevent-pthreads-2.1-7t64 libfabric1 273s libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 273s libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 libmunge2 273s libopenmpi40 libpciaccess0 libpmix2t64 librdmacm1t64 libscalapack-openmpi2.2 273s libucx0 libxnvctrl0 mpi-default-bin nwchem nwchem-data nwchem-openmpi 273s ocl-icd-libopencl1 openmpi-bin openmpi-common 273s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 273s Need to get 78.4 MB of archives. 273s After this operation, 353 MB of additional disk space will be used. 273s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 274s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 275s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 275s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 275s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 275s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 275s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 275s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 55.0-1ubuntu1 [71.5 kB] 275s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 275s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 275s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 275s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 275s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 275s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 275s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 275s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 275s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 275s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 275s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 275s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 55.0-1ubuntu1 [29.8 kB] 275s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 55.0-1ubuntu1 [43.3 kB] 275s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 275s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 275s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 275s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 275s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 275s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi2.2 arm64 2.2.2-1ubuntu1 [1649 kB] 275s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-data all 7.2.3-7build1 [6076 kB] 276s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-openmpi arm64 7.2.3-7build1 [13.1 MB] 276s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem all 7.2.3-7build1 [17.9 kB] 277s Fetched 78.4 MB in 3s (26.6 MB/s) 277s Selecting previously unselected package libllvm17t64:arm64. 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 277s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 277s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 278s Selecting previously unselected package libamd-comgr2:arm64. 278s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 278s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 278s Selecting previously unselected package libhsakmt1:arm64. 278s Preparing to unpack .../02-libhsakmt1_5.7.0-1build1_arm64.deb ... 278s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 278s Selecting previously unselected package libhsa-runtime64-1. 278s Preparing to unpack .../03-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 278s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 278s Selecting previously unselected package libamdhip64-5. 278s Preparing to unpack .../04-libamdhip64-5_5.7.1-5_arm64.deb ... 278s Unpacking libamdhip64-5 (5.7.1-5) ... 278s Selecting previously unselected package libblas3:arm64. 278s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 278s Unpacking libblas3:arm64 (3.12.1-2) ... 278s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 278s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 278s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 278s Selecting previously unselected package librdmacm1t64:arm64. 278s Preparing to unpack .../07-librdmacm1t64_55.0-1ubuntu1_arm64.deb ... 278s Unpacking librdmacm1t64:arm64 (55.0-1ubuntu1) ... 278s Selecting previously unselected package libfabric1:arm64. 278s Preparing to unpack .../08-libfabric1_1.17.0-3.1_arm64.deb ... 278s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 278s Selecting previously unselected package libgfortran5:arm64. 278s Preparing to unpack .../09-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 278s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 278s Selecting previously unselected package libgomp1:arm64. 278s Preparing to unpack .../10-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 278s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 278s Selecting previously unselected package libhwloc15:arm64. 278s Preparing to unpack .../11-libhwloc15_2.12.0-1_arm64.deb ... 278s Unpacking libhwloc15:arm64 (2.12.0-1) ... 278s Selecting previously unselected package liblapack3:arm64. 278s Preparing to unpack .../12-liblapack3_3.12.1-2_arm64.deb ... 278s Unpacking liblapack3:arm64 (3.12.1-2) ... 279s Selecting previously unselected package libmunge2:arm64. 279s Preparing to unpack .../13-libmunge2_0.5.16-1_arm64.deb ... 279s Unpacking libmunge2:arm64 (0.5.16-1) ... 279s Selecting previously unselected package libpciaccess0:arm64. 279s Preparing to unpack .../14-libpciaccess0_0.17-3build1_arm64.deb ... 279s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 279s Selecting previously unselected package libxnvctrl0:arm64. 279s Preparing to unpack .../15-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 279s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 279s Selecting previously unselected package ocl-icd-libopencl1:arm64. 279s Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 279s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 279s Selecting previously unselected package libhwloc-plugins:arm64. 279s Preparing to unpack .../17-libhwloc-plugins_2.12.0-1_arm64.deb ... 279s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 279s Selecting previously unselected package libpmix2t64:arm64. 279s Preparing to unpack .../18-libpmix2t64_5.0.6-5_arm64.deb ... 279s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 279s Selecting previously unselected package libibumad3:arm64. 279s Preparing to unpack .../19-libibumad3_55.0-1ubuntu1_arm64.deb ... 279s Unpacking libibumad3:arm64 (55.0-1ubuntu1) ... 279s Selecting previously unselected package libibmad5:arm64. 279s Preparing to unpack .../20-libibmad5_55.0-1ubuntu1_arm64.deb ... 279s Unpacking libibmad5:arm64 (55.0-1ubuntu1) ... 279s Selecting previously unselected package libucx0:arm64. 279s Preparing to unpack .../21-libucx0_1.18.1+ds-2_arm64.deb ... 279s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 279s Selecting previously unselected package libopenmpi40:arm64. 279s Preparing to unpack .../22-libopenmpi40_5.0.7-1_arm64.deb ... 279s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 279s Selecting previously unselected package openmpi-common. 279s Preparing to unpack .../23-openmpi-common_5.0.7-1_all.deb ... 279s Unpacking openmpi-common (5.0.7-1) ... 279s Selecting previously unselected package openmpi-bin. 279s Preparing to unpack .../24-openmpi-bin_5.0.7-1_arm64.deb ... 279s Unpacking openmpi-bin (5.0.7-1) ... 279s Selecting previously unselected package mpi-default-bin. 279s Preparing to unpack .../25-mpi-default-bin_1.18_arm64.deb ... 279s Unpacking mpi-default-bin (1.18) ... 279s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 279s Preparing to unpack .../26-libscalapack-openmpi2.2_2.2.2-1ubuntu1_arm64.deb ... 279s Unpacking libscalapack-openmpi2.2:arm64 (2.2.2-1ubuntu1) ... 279s Selecting previously unselected package nwchem-data. 279s Preparing to unpack .../27-nwchem-data_7.2.3-7build1_all.deb ... 279s Unpacking nwchem-data (7.2.3-7build1) ... 280s Selecting previously unselected package nwchem-openmpi. 280s Preparing to unpack .../28-nwchem-openmpi_7.2.3-7build1_arm64.deb ... 280s Unpacking nwchem-openmpi (7.2.3-7build1) ... 280s Selecting previously unselected package nwchem. 280s Preparing to unpack .../29-nwchem_7.2.3-7build1_all.deb ... 280s Unpacking nwchem (7.2.3-7build1) ... 280s Setting up libpciaccess0:arm64 (0.17-3build1) ... 280s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 280s Setting up nwchem-data (7.2.3-7build1) ... 280s Setting up libibumad3:arm64 (55.0-1ubuntu1) ... 280s Setting up libibmad5:arm64 (55.0-1ubuntu1) ... 280s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 280s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 280s Setting up libblas3:arm64 (3.12.1-2) ... 280s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 280s Setting up libmunge2:arm64 (0.5.16-1) ... 280s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 280s Setting up libhwloc15:arm64 (2.12.0-1) ... 280s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 280s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 280s Setting up openmpi-common (5.0.7-1) ... 280s Setting up librdmacm1t64:arm64 (55.0-1ubuntu1) ... 280s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 280s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 280s Setting up libfabric1:arm64 (1.17.0-3.1) ... 280s Setting up liblapack3:arm64 (3.12.1-2) ... 280s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 280s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 280s Setting up libpmix2t64:arm64 (5.0.6-5) ... 280s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 280s Setting up libamdhip64-5 (5.7.1-5) ... 280s Setting up libucx0:arm64 (1.18.1+ds-2) ... 280s Setting up libopenmpi40:arm64 (5.0.7-1) ... 280s Setting up openmpi-bin (5.0.7-1) ... 280s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 280s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 280s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 280s Setting up mpi-default-bin (1.18) ... 280s Setting up libscalapack-openmpi2.2:arm64 (2.2.2-1ubuntu1) ... 280s Setting up nwchem-openmpi (7.2.3-7build1) ... 280s Setting up nwchem (7.2.3-7build1) ... 280s Processing triggers for man-db (2.13.0-1) ... 281s Processing triggers for libc-bin (2.41-1ubuntu2) ... 282s autopkgtest [23:47:36]: test testsuite.sh: [----------------------- 282s ===== TESTING NWCHEM WITH DEFAULT MPI INSTALLATION ===== 282s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 282s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 282s 282s 282s Running tests/dft_he2+/dft_he2+ 282s 282s cleaning scratch 282s copying input and verified output files 282s running nwchem (/usr/bin/nwchem) with 1 processors 282s 315s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 315s OK 315s 315s Running tests/qmmm_grad0/qmmm_grad0 315s 315s cleaning scratch 315s copying input and verified output files 315s running nwchem (/usr/bin/nwchem) with 1 processors 315s 321s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 321s OK 321s 321s Running tests/auh2o/auh2o 321s 321s cleaning scratch 321s copying input and verified output files 321s running nwchem (/usr/bin/nwchem) with 1 processors 321s 324s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 324s OK 324s 324s Running tests/autosym/autosym 324s 324s cleaning scratch 324s copying input and verified output files 324s running nwchem (/usr/bin/nwchem) with 1 processors 324s 353s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 353s OK 353s 353s Running tests/h2mp2/h2mp2 353s 353s cleaning scratch 353s copying input and verified output files 353s running nwchem (/usr/bin/nwchem) with 1 processors 353s 359s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 359s OK 359s 359s Running tests/h2o/h2o 359s 359s cleaning scratch 359s copying input and verified output files 359s running nwchem (/usr/bin/nwchem) with 1 processors 359s 361s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 361s OK 361s 361s Running tests/hess_h2o/hess_h2o 361s 361s cleaning scratch 361s copying input and verified output files 361s running nwchem (/usr/bin/nwchem) with 1 processors 361s 375s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 375s OK 375s 375s Running tests/prop_h2o/prop_h2o 375s 375s cleaning scratch 375s copying input and verified output files 375s running nwchem (/usr/bin/nwchem) with 1 processors 375s 382s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 382s OK 382s 382s Running tests/geom_zmatrix/geom_zmatrix 382s 382s cleaning scratch 382s copying input and verified output files 382s running nwchem (/usr/bin/nwchem) with 1 processors 382s 388s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 388s OK 388s 388s Running tests/rimp2_ne/rimp2_ne 388s 388s cleaning scratch 388s copying input and verified output files 388s running nwchem (/usr/bin/nwchem) with 1 processors 388s 393s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 393s OK 393s 393s Running tests/small_intchk/small_intchk 393s 393s cleaning scratch 393s copying input and verified output files 393s running nwchem (/usr/bin/nwchem) with 1 processors 393s 402s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 402s OK 402s 402s Running tests/tagcheck/tagcheck 402s 402s cleaning scratch 402s copying input and verified output files 402s running nwchem (/usr/bin/nwchem) with 1 processors 402s 407s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 407s OK 407s 407s Running tests/testtab/testtab 407s 407s cleaning scratch 407s copying input and verified output files 407s running nwchem (/usr/bin/nwchem) with 1 processors 407s 408s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 408s OK 408s 408s Running tests/h2o_dk/h2o_dk 408s 408s cleaning scratch 408s copying input and verified output files 408s running nwchem (/usr/bin/nwchem) with 1 processors 408s 415s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 415s OK 415s 415s Running tests/cosmo_h2o/cosmo_h2o 415s 415s cleaning scratch 415s copying input and verified output files 415s running nwchem (/usr/bin/nwchem) with 1 processors 415s 418s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 418s OK 418s 418s Running tests/ch5n_nbo/ch5n_nbo 418s 418s cleaning scratch 418s copying input and verified output files 418s running nwchem (/usr/bin/nwchem) with 1 processors 418s 420s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 420s OK 420s 420s Running tests/h2s_finite/h2s_finite 420s 420s cleaning scratch 420s copying input and verified output files 420s running nwchem (/usr/bin/nwchem) with 1 processors 420s 426s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 426s OK 426s 426s Running tests/pyqa3/pyqa3 426s 426s cleaning scratch 426s copying input and verified output files 426s running nwchem (/usr/bin/nwchem) with 1 processors 426s 434s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 434s OK 434s 434s Running tests/startag/startag 434s 434s cleaning scratch 434s copying input and verified output files 434s running nwchem (/usr/bin/nwchem) with 1 processors 434s 437s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 437s OK 437s 437s Running tests/esp/esp 437s 437s cleaning scratch 437s copying input and verified output files 437s running nwchem (/usr/bin/nwchem) with 1 processors 437s 440s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 440s ESP charges match 440s 440s 440s Running tests/esp_uhf/esp_uhf 440s 440s cleaning scratch 440s copying input and verified output files 440s running nwchem (/usr/bin/nwchem) with 1 processors 440s 445s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 445s ESP charges match 445s 445s 445s Running tests/dft_bsse/dft_bsse 445s 445s cleaning scratch 445s copying input and verified output files 445s running nwchem (/usr/bin/nwchem) with 1 processors 445s 451s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 451s OK 451s 451s Running tests/dplot_dft/dplot_dft 451s 451s cleaning scratch 451s copying input and verified output files 451s running nwchem (/usr/bin/nwchem) with 1 processors 451s 454s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 454s OK 454s 454s Running tests/dft_meta/dft_meta 454s 454s cleaning scratch 454s copying input and verified output files 454s running nwchem (/usr/bin/nwchem) with 1 processors 454s 510s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 510s OK 510s 510s Running tests/dft_mpwb1khf/dft_mpwb1khf 510s 510s cleaning scratch 510s copying input and verified output files 510s running nwchem (/usr/bin/nwchem) with 1 processors 510s 518s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 518s OK 518s 518s Running tests/prop_uhf_h2o/prop_uhf_h2o 518s 518s cleaning scratch 518s copying input and verified output files 518s running nwchem (/usr/bin/nwchem) with 1 processors 518s 561s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 561s OK 561s 561s Running tests/et_zn_dimer/et_zn_dimer 561s 561s cleaning scratch 561s copying input and verified output files 561s running nwchem (/usr/bin/nwchem) with 1 processors 561s 596s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 596s OK 596s 596s Running tests/vectors_rotate/vectors_rotate 596s 596s cleaning scratch 596s copying input and verified output files 596s running nwchem (/usr/bin/nwchem) with 1 processors 596s 601s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 601s OK 601s 601s Running tests/sad_ch3hf/sad_ch3hf 601s 601s cleaning scratch 601s copying input and verified output files 601s running nwchem (/usr/bin/nwchem) with 1 processors 601s 635s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 635s OK 635s 635s Running tests/band/band 635s 635s cleaning scratch 635s copying input and verified output files 635s running nwchem (/usr/bin/nwchem) with 1 processors 635s 642s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 642s OK 642s 642s Running tests/pspw/pspw 642s 642s cleaning scratch 642s copying input and verified output files 642s running nwchem (/usr/bin/nwchem) with 1 processors 642s 657s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 657s OK 657s 657s Running tests/pspw_stress/pspw_stress 657s 657s cleaning scratch 657s copying input and verified output files 657s running nwchem (/usr/bin/nwchem) with 1 processors 657s 676s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 676s OK 676s 676s Running tests/mcscf_ch2/mcscf_ch2 676s 676s cleaning scratch 676s copying input and verified output files 676s running nwchem (/usr/bin/nwchem) with 1 processors 676s 741s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 741s OK 741s 741s Running tests/dft_li2freq/dft_li2freq 741s 741s cleaning scratch 741s copying input and verified output files 741s running nwchem (/usr/bin/nwchem) with 1 processors 741s 805s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 805s OK 805s 805s Running tests/n2_ccsd/n2_ccsd 805s 805s cleaning scratch 805s copying input and verified output files 805s running nwchem (/usr/bin/nwchem) with 1 processors 805s 867s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 867s OK 867s 867s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 867s 867s cleaning scratch 867s copying input and verified output files 867s running nwchem (/usr/bin/nwchem) with 1 processors 867s 871s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 871s OK 871s 871s Running tests/tddft_h2o/tddft_h2o 871s 871s cleaning scratch 871s copying input and verified output files 871s running nwchem (/usr/bin/nwchem) with 1 processors 871s 915s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 915s OK 915s 915s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 915s 915s cleaning scratch 915s copying input and verified output files 915s running nwchem (/usr/bin/nwchem) with 1 processors 915s 1552s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1552s OK 1552s 1552s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 1552s 1552s cleaning scratch 1552s copying input and verified output files 1552s running nwchem (/usr/bin/nwchem) with 1 processors 1552s 1568s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1568s OK 1568s 1568s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 1568s 1568s cleaning scratch 1568s copying input and verified output files 1568s running nwchem (/usr/bin/nwchem) with 1 processors 1568s 1573s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1573s OK 1573s 1573s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 1573s 1573s cleaning scratch 1573s copying input and verified output files 1573s running nwchem (/usr/bin/nwchem) with 1 processors 1573s 1637s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1637s OK 1637s 1637s Running tests/mp2_scs_n2/mp2_scs_n2 1637s 1637s cleaning scratch 1637s copying input and verified output files 1637s running nwchem (/usr/bin/nwchem) with 1 processors 1637s 1660s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1660s OK 1660s 1660s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 1660s 1660s cleaning scratch 1660s copying input and verified output files 1660s running nwchem (/usr/bin/nwchem) with 1 processors 1660s 1707s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1707s OK 1707s 1707s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 1707s 1707s cleaning scratch 1707s copying input and verified output files 1707s running nwchem (/usr/bin/nwchem) with 1 processors 1707s 1719s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1719s OK 1719s 1719s Running tests/water/water_md 1719s 1719s cleaning scratch 1719s copying input and verified output files 1719s running nwchem (/usr/bin/nwchem) with 1 processors 1719s 1720s verifying nwout ...... skipped 1720s verifying test ....... completed 1720s 1720s Running tests/water/water_pme 1720s 1720s cleaning scratch 1720s copying input and verified output files 1720s running nwchem (/usr/bin/nwchem) with 1 processors 1720s 1720s verifying nwout ...... skipped 1720s verifying test ....... completed 1720s 1720s Running tests/pspw_md/pspw_md 1720s 1720s cleaning scratch 1720s copying input and verified output files 1720s running nwchem (/usr/bin/nwchem) with 1 processors 1720s 1738s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1738s OK 1738s 1738s Running tests/cosmo_h3co/cosmo_h3co 1738s 1738s cleaning scratch 1738s copying input and verified output files 1738s running nwchem (/usr/bin/nwchem) with 1 processors 1738s 1757s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1757s OK 1757s 1757s OK 1757s autopkgtest [00:12:11]: test testsuite.sh: -----------------------] 1758s autopkgtest [00:12:12]: test testsuite.sh: - - - - - - - - - - results - - - - - - - - - - 1758s testsuite.sh PASS 1758s autopkgtest [00:12:12]: test testsuite-openmpi: preparing testbed 1845s autopkgtest [00:13:39]: testbed dpkg architecture: arm64 1845s autopkgtest [00:13:39]: testbed apt version: 2.9.33 1845s autopkgtest [00:13:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1845s autopkgtest [00:13:39]: testbed release detected to be: plucky 1846s autopkgtest [00:13:40]: updating testbed package index (apt update) 1846s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 1847s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1847s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1847s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1847s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 1847s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 1847s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 1847s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 1847s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 1847s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 1847s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 1847s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 1847s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 1847s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 1847s Fetched 972 kB in 1s (1256 kB/s) 1848s Reading package lists... 1849s Reading package lists... 1849s Building dependency tree... 1849s Reading state information... 1849s Calculating upgrade... 1850s Calculating upgrade... 1850s The following packages will be upgraded: 1850s pinentry-curses python3-jinja2 strace 1850s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1850s Need to get 647 kB of archives. 1850s After this operation, 11.3 kB of additional disk space will be used. 1850s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 1850s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 1850s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 1851s Fetched 647 kB in 1s (1163 kB/s) 1851s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 1851s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 1851s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 1851s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 1851s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 1851s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 1851s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 1851s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 1851s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 1852s Setting up strace (6.13+ds-1ubuntu1) ... 1852s Processing triggers for man-db (2.13.0-1) ... 1852s Reading package lists... 1853s Building dependency tree... 1853s Reading state information... 1853s Solving dependencies... 1853s The following packages will be REMOVED: 1853s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 1853s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 1853s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 1853s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 1854s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 1854s After this operation, 267 MB disk space will be freed. 1854s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 1854s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 1854s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 1854s Removing libpython3.12t64:arm64 (3.12.9-1) ... 1854s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 1854s Removing libnsl2:arm64 (1.3.0-3build3) ... 1854s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 1854s Removing libunwind8:arm64 (1.6.2-3.1) ... 1854s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 1854s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 1856s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1856s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 1856s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 1856s /etc/kernel/postrm.d/initramfs-tools: 1856s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 1856s /etc/kernel/postrm.d/zz-flash-kernel: 1856s flash-kernel: Kernel 6.11.0-8-generic has been removed. 1856s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 1857s /etc/kernel/postrm.d/zz-update-grub: 1857s Sourcing file `/etc/default/grub' 1857s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1857s Generating grub configuration file ... 1857s Found linux image: /boot/vmlinuz-6.14.0-10-generic 1857s Found initrd image: /boot/initrd.img-6.14.0-10-generic 1857s Warning: os-prober will not be executed to detect other bootable partitions. 1857s Systems on them will not be added to the GRUB boot configuration. 1857s Check GRUB_DISABLE_OS_PROBER documentation entry. 1857s Adding boot menu entry for UEFI Firmware Settings ... 1857s done 1857s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1857s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1858s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 1858s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1858s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 1858s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1858s autopkgtest [00:13:52]: upgrading testbed (apt dist-upgrade and autopurge) 1858s Reading package lists... 1858s Building dependency tree... 1858s Reading state information... 1859s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1859s Starting 2 pkgProblemResolver with broken count: 0 1859s Done 1860s Entering ResolveByKeep 1860s 1860s Calculating upgrade... 1860s The following packages will be upgraded: 1860s libc-bin libc-dev-bin libc6 libc6-dev locales 1860s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1860s Need to get 9530 kB of archives. 1860s After this operation, 0 B of additional disk space will be used. 1860s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 1861s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 1861s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 1862s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 1862s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 1863s Preconfiguring packages ... 1863s Fetched 9530 kB in 2s (4221 kB/s) 1863s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1863s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 1863s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1863s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 1863s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1863s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 1863s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1864s Setting up libc6:arm64 (2.41-1ubuntu2) ... 1864s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1864s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 1864s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1864s Setting up libc-bin (2.41-1ubuntu2) ... 1864s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1864s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 1864s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1864s Setting up locales (2.41-1ubuntu2) ... 1865s Generating locales (this might take a while)... 1867s en_US.UTF-8... done 1867s Generation complete. 1867s Setting up libc-dev-bin (2.41-1ubuntu2) ... 1867s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 1867s Processing triggers for man-db (2.13.0-1) ... 1868s Processing triggers for systemd (257.3-1ubuntu3) ... 1869s Reading package lists... 1869s Building dependency tree... 1869s Reading state information... 1869s Starting pkgProblemResolver with broken count: 0 1869s Starting 2 pkgProblemResolver with broken count: 0 1869s Done 1870s Solving dependencies... 1870s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1870s autopkgtest [00:14:04]: rebooting testbed after setup commands that affected boot 1896s Reading package lists... 1897s Building dependency tree... 1897s Reading state information... 1897s Starting pkgProblemResolver with broken count: 0 1897s Starting 2 pkgProblemResolver with broken count: 0 1897s Done 1898s The following NEW packages will be installed: 1898s libamd-comgr2 libamdhip64-5 libblas3 libevent-pthreads-2.1-7t64 libfabric1 1898s libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 1898s libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 libmunge2 1898s libopenmpi40 libpciaccess0 libpmix2t64 librdmacm1t64 libscalapack-openmpi2.2 1898s libucx0 libxnvctrl0 mpi-default-bin nwchem-data nwchem-openmpi 1898s ocl-icd-libopencl1 openmpi-bin openmpi-common 1898s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 1898s Need to get 78.4 MB of archives. 1898s After this operation, 352 MB of additional disk space will be used. 1898s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 1900s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 1901s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 1901s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 1901s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 1901s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 1901s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 1901s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 55.0-1ubuntu1 [71.5 kB] 1901s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 1901s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 1901s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 1901s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 1901s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 1901s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 1901s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 1901s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 1901s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 1901s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 1901s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 1901s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 55.0-1ubuntu1 [29.8 kB] 1901s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 55.0-1ubuntu1 [43.3 kB] 1901s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 1902s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 1902s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 1902s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 1902s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 1902s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi2.2 arm64 2.2.2-1ubuntu1 [1649 kB] 1902s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-data all 7.2.3-7build1 [6076 kB] 1902s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-openmpi arm64 7.2.3-7build1 [13.1 MB] 1902s Fetched 78.4 MB in 4s (17.5 MB/s) 1903s Selecting previously unselected package libllvm17t64:arm64. 1903s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1903s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 1903s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 1903s Selecting previously unselected package libamd-comgr2:arm64. 1903s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 1903s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1904s Selecting previously unselected package libhsakmt1:arm64. 1904s Preparing to unpack .../02-libhsakmt1_5.7.0-1build1_arm64.deb ... 1904s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 1904s Selecting previously unselected package libhsa-runtime64-1. 1904s Preparing to unpack .../03-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 1904s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1904s Selecting previously unselected package libamdhip64-5. 1904s Preparing to unpack .../04-libamdhip64-5_5.7.1-5_arm64.deb ... 1904s Unpacking libamdhip64-5 (5.7.1-5) ... 1904s Selecting previously unselected package libblas3:arm64. 1904s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 1904s Unpacking libblas3:arm64 (3.12.1-2) ... 1904s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 1904s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 1904s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 1904s Selecting previously unselected package librdmacm1t64:arm64. 1904s Preparing to unpack .../07-librdmacm1t64_55.0-1ubuntu1_arm64.deb ... 1904s Unpacking librdmacm1t64:arm64 (55.0-1ubuntu1) ... 1904s Selecting previously unselected package libfabric1:arm64. 1904s Preparing to unpack .../08-libfabric1_1.17.0-3.1_arm64.deb ... 1904s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 1904s Selecting previously unselected package libgfortran5:arm64. 1904s Preparing to unpack .../09-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 1904s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 1904s Selecting previously unselected package libgomp1:arm64. 1904s Preparing to unpack .../10-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 1904s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 1904s Selecting previously unselected package libhwloc15:arm64. 1904s Preparing to unpack .../11-libhwloc15_2.12.0-1_arm64.deb ... 1904s Unpacking libhwloc15:arm64 (2.12.0-1) ... 1904s Selecting previously unselected package liblapack3:arm64. 1904s Preparing to unpack .../12-liblapack3_3.12.1-2_arm64.deb ... 1904s Unpacking liblapack3:arm64 (3.12.1-2) ... 1904s Selecting previously unselected package libmunge2:arm64. 1904s Preparing to unpack .../13-libmunge2_0.5.16-1_arm64.deb ... 1904s Unpacking libmunge2:arm64 (0.5.16-1) ... 1904s Selecting previously unselected package libpciaccess0:arm64. 1904s Preparing to unpack .../14-libpciaccess0_0.17-3build1_arm64.deb ... 1904s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 1904s Selecting previously unselected package libxnvctrl0:arm64. 1904s Preparing to unpack .../15-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 1904s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 1904s Selecting previously unselected package ocl-icd-libopencl1:arm64. 1904s Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 1904s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 1904s Selecting previously unselected package libhwloc-plugins:arm64. 1904s Preparing to unpack .../17-libhwloc-plugins_2.12.0-1_arm64.deb ... 1904s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 1904s Selecting previously unselected package libpmix2t64:arm64. 1904s Preparing to unpack .../18-libpmix2t64_5.0.6-5_arm64.deb ... 1904s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 1904s Selecting previously unselected package libibumad3:arm64. 1904s Preparing to unpack .../19-libibumad3_55.0-1ubuntu1_arm64.deb ... 1904s Unpacking libibumad3:arm64 (55.0-1ubuntu1) ... 1904s Selecting previously unselected package libibmad5:arm64. 1904s Preparing to unpack .../20-libibmad5_55.0-1ubuntu1_arm64.deb ... 1904s Unpacking libibmad5:arm64 (55.0-1ubuntu1) ... 1904s Selecting previously unselected package libucx0:arm64. 1904s Preparing to unpack .../21-libucx0_1.18.1+ds-2_arm64.deb ... 1904s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 1905s Selecting previously unselected package libopenmpi40:arm64. 1905s Preparing to unpack .../22-libopenmpi40_5.0.7-1_arm64.deb ... 1905s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 1905s Selecting previously unselected package openmpi-common. 1905s Preparing to unpack .../23-openmpi-common_5.0.7-1_all.deb ... 1905s Unpacking openmpi-common (5.0.7-1) ... 1905s Selecting previously unselected package openmpi-bin. 1905s Preparing to unpack .../24-openmpi-bin_5.0.7-1_arm64.deb ... 1905s Unpacking openmpi-bin (5.0.7-1) ... 1905s Selecting previously unselected package mpi-default-bin. 1905s Preparing to unpack .../25-mpi-default-bin_1.18_arm64.deb ... 1905s Unpacking mpi-default-bin (1.18) ... 1905s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 1905s Preparing to unpack .../26-libscalapack-openmpi2.2_2.2.2-1ubuntu1_arm64.deb ... 1905s Unpacking libscalapack-openmpi2.2:arm64 (2.2.2-1ubuntu1) ... 1905s Selecting previously unselected package nwchem-data. 1905s Preparing to unpack .../27-nwchem-data_7.2.3-7build1_all.deb ... 1905s Unpacking nwchem-data (7.2.3-7build1) ... 1905s Selecting previously unselected package nwchem-openmpi. 1905s Preparing to unpack .../28-nwchem-openmpi_7.2.3-7build1_arm64.deb ... 1905s Unpacking nwchem-openmpi (7.2.3-7build1) ... 1906s Setting up libpciaccess0:arm64 (0.17-3build1) ... 1906s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 1906s Setting up nwchem-data (7.2.3-7build1) ... 1906s Setting up libibumad3:arm64 (55.0-1ubuntu1) ... 1906s Setting up libibmad5:arm64 (55.0-1ubuntu1) ... 1906s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 1906s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 1906s Setting up libblas3:arm64 (3.12.1-2) ... 1906s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 1906s Setting up libmunge2:arm64 (0.5.16-1) ... 1906s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 1906s Setting up libhwloc15:arm64 (2.12.0-1) ... 1906s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 1906s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 1906s Setting up openmpi-common (5.0.7-1) ... 1906s Setting up librdmacm1t64:arm64 (55.0-1ubuntu1) ... 1906s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1906s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 1906s Setting up libfabric1:arm64 (1.17.0-3.1) ... 1906s Setting up liblapack3:arm64 (3.12.1-2) ... 1906s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 1906s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 1906s Setting up libpmix2t64:arm64 (5.0.6-5) ... 1906s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1906s Setting up libamdhip64-5 (5.7.1-5) ... 1906s Setting up libucx0:arm64 (1.18.1+ds-2) ... 1906s Setting up libopenmpi40:arm64 (5.0.7-1) ... 1906s Setting up openmpi-bin (5.0.7-1) ... 1906s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1906s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 1906s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1906s Setting up mpi-default-bin (1.18) ... 1906s Setting up libscalapack-openmpi2.2:arm64 (2.2.2-1ubuntu1) ... 1906s Setting up nwchem-openmpi (7.2.3-7build1) ... 1906s Processing triggers for man-db (2.13.0-1) ... 1906s Processing triggers for libc-bin (2.41-1ubuntu2) ... 2110s autopkgtest [00:18:04]: test testsuite-openmpi: [----------------------- 2111s ===== TESTING NWCHEM BUILD FOR openmpi ===== 2111s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2111s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2111s 2111s 2111s Running tests/dft_he2+/dft_he2+ 2111s 2111s cleaning scratch 2111s copying input and verified output files 2111s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2111s 2145s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2145s OK 2145s 2145s Running tests/qmmm_grad0/qmmm_grad0 2145s 2145s cleaning scratch 2145s copying input and verified output files 2145s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2145s 2151s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2151s OK 2151s 2151s Running tests/auh2o/auh2o 2151s 2151s cleaning scratch 2151s copying input and verified output files 2151s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2151s 2154s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2154s OK 2154s 2154s Running tests/autosym/autosym 2154s 2154s cleaning scratch 2154s copying input and verified output files 2154s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2154s 2183s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2183s OK 2183s 2183s Running tests/h2mp2/h2mp2 2183s 2183s cleaning scratch 2183s copying input and verified output files 2183s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2183s 2189s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2189s OK 2189s 2189s Running tests/h2o/h2o 2189s 2189s cleaning scratch 2189s copying input and verified output files 2189s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2189s 2191s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2191s OK 2191s 2191s Running tests/hess_h2o/hess_h2o 2191s 2191s cleaning scratch 2191s copying input and verified output files 2191s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2191s 2205s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2205s OK 2205s 2205s Running tests/prop_h2o/prop_h2o 2205s 2205s cleaning scratch 2205s copying input and verified output files 2205s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2205s 2213s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2213s OK 2213s 2213s Running tests/geom_zmatrix/geom_zmatrix 2213s 2213s cleaning scratch 2213s copying input and verified output files 2213s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2213s 2219s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2219s OK 2219s 2219s Running tests/rimp2_ne/rimp2_ne 2219s 2219s cleaning scratch 2219s copying input and verified output files 2219s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2219s 2224s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2224s OK 2224s 2224s Running tests/small_intchk/small_intchk 2224s 2224s cleaning scratch 2224s copying input and verified output files 2224s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2224s 2234s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2234s OK 2234s 2234s Running tests/tagcheck/tagcheck 2234s 2234s cleaning scratch 2234s copying input and verified output files 2234s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2234s 2238s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2238s OK 2238s 2238s Running tests/testtab/testtab 2238s 2238s cleaning scratch 2238s copying input and verified output files 2238s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2238s 2240s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2240s OK 2240s 2240s Running tests/h2o_dk/h2o_dk 2240s 2240s cleaning scratch 2240s copying input and verified output files 2240s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2240s 2247s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2247s OK 2247s 2247s Running tests/cosmo_h2o/cosmo_h2o 2247s 2247s cleaning scratch 2247s copying input and verified output files 2247s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2247s 2250s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2250s OK 2250s 2250s Running tests/ch5n_nbo/ch5n_nbo 2250s 2250s cleaning scratch 2250s copying input and verified output files 2250s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2250s 2252s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2252s OK 2252s 2252s Running tests/h2s_finite/h2s_finite 2252s 2252s cleaning scratch 2252s copying input and verified output files 2252s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2252s 2258s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2258s OK 2258s 2258s Running tests/pyqa3/pyqa3 2258s 2258s cleaning scratch 2258s copying input and verified output files 2258s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2258s 2267s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2267s OK 2267s 2267s Running tests/startag/startag 2267s 2267s cleaning scratch 2267s copying input and verified output files 2267s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2267s 2270s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2270s OK 2270s 2270s Running tests/esp/esp 2270s 2270s cleaning scratch 2270s copying input and verified output files 2270s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2270s 2273s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2273s ESP charges match 2273s 2273s 2273s Running tests/esp_uhf/esp_uhf 2273s 2273s cleaning scratch 2273s copying input and verified output files 2273s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2273s 2278s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2278s ESP charges match 2278s 2278s 2278s Running tests/dft_bsse/dft_bsse 2278s 2278s cleaning scratch 2278s copying input and verified output files 2278s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2278s 2284s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2284s OK 2284s 2284s Running tests/dplot_dft/dplot_dft 2284s 2284s cleaning scratch 2284s copying input and verified output files 2284s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2284s 2287s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2287s OK 2287s 2287s Running tests/dft_meta/dft_meta 2287s 2287s cleaning scratch 2287s copying input and verified output files 2287s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2287s 2345s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2345s OK 2345s 2345s Running tests/dft_mpwb1khf/dft_mpwb1khf 2345s 2345s cleaning scratch 2345s copying input and verified output files 2345s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2345s 2354s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2354s OK 2354s 2354s Running tests/prop_uhf_h2o/prop_uhf_h2o 2354s 2354s cleaning scratch 2354s copying input and verified output files 2354s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2354s 2398s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2398s OK 2398s 2398s Running tests/et_zn_dimer/et_zn_dimer 2398s 2398s cleaning scratch 2398s copying input and verified output files 2398s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2398s 2435s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2435s OK 2435s 2435s Running tests/vectors_rotate/vectors_rotate 2435s 2435s cleaning scratch 2435s copying input and verified output files 2435s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2435s 2440s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2440s OK 2440s 2440s Running tests/sad_ch3hf/sad_ch3hf 2440s 2440s cleaning scratch 2440s copying input and verified output files 2440s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2440s 2475s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2475s OK 2475s 2475s Running tests/band/band 2475s 2475s cleaning scratch 2475s copying input and verified output files 2475s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2475s 2482s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2482s OK 2482s 2482s Running tests/pspw/pspw 2482s 2482s cleaning scratch 2482s copying input and verified output files 2482s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2482s 2498s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2498s OK 2498s 2498s Running tests/pspw_stress/pspw_stress 2498s 2498s cleaning scratch 2498s copying input and verified output files 2498s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2498s 2517s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2517s OK 2517s 2517s Running tests/mcscf_ch2/mcscf_ch2 2517s 2517s cleaning scratch 2517s copying input and verified output files 2517s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2517s 2585s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2585s OK 2585s 2585s Running tests/dft_li2freq/dft_li2freq 2585s 2585s cleaning scratch 2585s copying input and verified output files 2585s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2585s 2653s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2653s OK 2653s 2653s Running tests/n2_ccsd/n2_ccsd 2653s 2653s cleaning scratch 2653s copying input and verified output files 2653s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2653s 2717s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2717s OK 2717s 2717s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 2717s 2717s cleaning scratch 2717s copying input and verified output files 2717s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2717s 2721s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2721s OK 2721s 2721s Running tests/tddft_h2o/tddft_h2o 2721s 2721s cleaning scratch 2721s copying input and verified output files 2721s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2721s 2766s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2766s OK 2766s 2766s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 2766s 2766s cleaning scratch 2766s copying input and verified output files 2766s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2766s 3419s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3419s OK 3419s 3419s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 3419s 3419s cleaning scratch 3419s copying input and verified output files 3419s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3419s 3436s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3436s OK 3436s 3436s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 3436s 3436s cleaning scratch 3436s copying input and verified output files 3436s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3436s 3441s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3441s OK 3441s 3441s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 3441s 3441s cleaning scratch 3441s copying input and verified output files 3441s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3441s 3511s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3511s OK 3511s 3511s Running tests/mp2_scs_n2/mp2_scs_n2 3511s 3511s cleaning scratch 3511s copying input and verified output files 3511s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3511s 3535s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3535s OK 3535s 3535s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 3535s 3535s cleaning scratch 3535s copying input and verified output files 3535s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3535s 3583s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3583s OK 3583s 3583s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 3583s 3583s cleaning scratch 3583s copying input and verified output files 3583s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3583s 3596s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3596s OK 3596s 3596s Running tests/water/water_md 3596s 3596s cleaning scratch 3596s copying input and verified output files 3596s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3596s 3596s verifying nwout ...... skipped 3596s verifying test ....... completed 3596s 3596s Running tests/water/water_pme 3596s 3596s cleaning scratch 3596s copying input and verified output files 3597s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3597s 3597s verifying nwout ...... skipped 3597s verifying test ....... completed 3597s 3597s Running tests/pspw_md/pspw_md 3597s 3597s cleaning scratch 3597s copying input and verified output files 3597s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3597s 3615s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3615s OK 3615s 3615s Running tests/cosmo_h3co/cosmo_h3co 3615s 3615s cleaning scratch 3615s copying input and verified output files 3615s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3615s 3635s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3635s OK 3635s 3635s OK 3635s autopkgtest [00:43:29]: test testsuite-openmpi: -----------------------] 3635s autopkgtest [00:43:29]: test testsuite-openmpi: - - - - - - - - - - results - - - - - - - - - - 3635s testsuite-openmpi PASS 3636s autopkgtest [00:43:30]: test testsuite-mpich: preparing testbed 3753s autopkgtest [00:45:27]: testbed dpkg architecture: arm64 3753s autopkgtest [00:45:27]: testbed apt version: 2.9.33 3754s autopkgtest [00:45:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 3754s autopkgtest [00:45:28]: testbed release detected to be: plucky 3755s autopkgtest [00:45:29]: updating testbed package index (apt update) 3755s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 3755s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 3755s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 3755s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 3756s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 3756s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 3756s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 3756s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 3756s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 3756s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 3756s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 3756s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 3756s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 3756s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 3756s Fetched 972 kB in 1s (1233 kB/s) 3757s Reading package lists... 3757s Reading package lists... 3758s Building dependency tree... 3758s Reading state information... 3758s Calculating upgrade... 3758s Calculating upgrade... 3759s The following packages will be upgraded: 3759s pinentry-curses python3-jinja2 strace 3759s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3759s Need to get 647 kB of archives. 3759s After this operation, 11.3 kB of additional disk space will be used. 3759s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 3759s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 3759s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 3760s Fetched 647 kB in 1s (1164 kB/s) 3760s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 3760s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 3760s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 3760s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 3760s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 3760s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 3760s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 3760s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 3760s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 3761s Setting up strace (6.13+ds-1ubuntu1) ... 3761s Processing triggers for man-db (2.13.0-1) ... 3761s Reading package lists... 3762s Building dependency tree... 3762s Reading state information... 3762s Solving dependencies... 3762s The following packages will be REMOVED: 3762s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 3762s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 3762s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 3762s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 3763s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 3763s After this operation, 267 MB disk space will be freed. 3763s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 3763s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 3763s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 3763s Removing libpython3.12t64:arm64 (3.12.9-1) ... 3763s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 3763s Removing libnsl2:arm64 (1.3.0-3build3) ... 3763s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 3763s Removing libunwind8:arm64 (1.6.2-3.1) ... 3763s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 3764s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 3765s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 3765s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 3765s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 3765s /etc/kernel/postrm.d/initramfs-tools: 3765s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 3765s /etc/kernel/postrm.d/zz-flash-kernel: 3765s flash-kernel: Kernel 6.11.0-8-generic has been removed. 3765s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 3766s /etc/kernel/postrm.d/zz-update-grub: 3766s Sourcing file `/etc/default/grub' 3766s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 3766s Generating grub configuration file ... 3766s Found linux image: /boot/vmlinuz-6.14.0-10-generic 3766s Found initrd image: /boot/initrd.img-6.14.0-10-generic 3767s Warning: os-prober will not be executed to detect other bootable partitions. 3767s Systems on them will not be added to the GRUB boot configuration. 3767s Check GRUB_DISABLE_OS_PROBER documentation entry. 3767s Adding boot menu entry for UEFI Firmware Settings ... 3767s done 3767s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 3767s Processing triggers for libc-bin (2.41-1ubuntu1) ... 3767s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 3767s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 3767s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 3767s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 3767s autopkgtest [00:45:41]: upgrading testbed (apt dist-upgrade and autopurge) 3767s Reading package lists... 3768s Building dependency tree... 3768s Reading state information... 3768s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 3768s Starting 2 pkgProblemResolver with broken count: 0 3768s Done 3769s Entering ResolveByKeep 3769s 3770s Calculating upgrade... 3770s The following packages will be upgraded: 3770s libc-bin libc-dev-bin libc6 libc6-dev locales 3770s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3770s Need to get 9530 kB of archives. 3770s After this operation, 0 B of additional disk space will be used. 3770s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 3771s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 3771s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 3771s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 3771s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 3771s Preconfiguring packages ... 3771s Fetched 9530 kB in 1s (9329 kB/s) 3771s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 3771s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 3771s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 3772s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 3772s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 3772s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 3772s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 3772s Setting up libc6:arm64 (2.41-1ubuntu2) ... 3772s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 3772s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 3772s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 3772s Setting up libc-bin (2.41-1ubuntu2) ... 3772s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 3772s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 3772s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 3773s Setting up locales (2.41-1ubuntu2) ... 3773s Generating locales (this might take a while)... 3775s en_US.UTF-8... done 3775s Generation complete. 3775s Setting up libc-dev-bin (2.41-1ubuntu2) ... 3775s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 3775s Processing triggers for man-db (2.13.0-1) ... 3776s Processing triggers for systemd (257.3-1ubuntu3) ... 3777s Reading package lists... 3777s Building dependency tree... 3777s Reading state information... 3778s Starting pkgProblemResolver with broken count: 0 3778s Starting 2 pkgProblemResolver with broken count: 0 3778s Done 3778s Solving dependencies... 3778s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3779s autopkgtest [00:45:53]: rebooting testbed after setup commands that affected boot 3804s Reading package lists... 3805s Building dependency tree... 3805s Reading state information... 3805s Starting pkgProblemResolver with broken count: 0 3805s Starting 2 pkgProblemResolver with broken count: 0 3805s Done 3806s The following NEW packages will be installed: 3806s hwloc-nox libamd-comgr2 libamdhip64-5 libblas3 libevent-pthreads-2.1-7t64 3806s libfabric1 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 3806s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 3806s libmpich12 libmunge2 libopenmpi40 libpciaccess0 libpmix2t64 librdmacm1t64 3806s libscalapack-mpich2.2 libslurm42t64 libucx0 libxnvctrl0 mpi-default-bin 3806s mpich nwchem-data nwchem-mpich ocl-icd-libopencl1 openmpi-bin openmpi-common 3806s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 3806s Need to get 87.2 MB of archives. 3806s After this operation, 400 MB of additional disk space will be used. 3806s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 3807s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 3808s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 3808s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 3808s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 3808s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 3808s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 3808s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 55.0-1ubuntu1 [71.5 kB] 3808s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 3808s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 3808s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 3808s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 3808s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 3808s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 3808s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 3808s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 3808s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 3808s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 3808s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 3808s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 55.0-1ubuntu1 [29.8 kB] 3808s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 55.0-1ubuntu1 [43.3 kB] 3808s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 3808s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 3808s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 3808s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 3808s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 3808s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpich12 arm64 4.2.1-5 [7850 kB] 3808s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-mpich2.2 arm64 2.2.2-1ubuntu1 [1648 kB] 3808s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslurm42t64 arm64 24.11.1-1 [566 kB] 3808s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-data all 7.2.3-7build1 [6076 kB] 3809s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 hwloc-nox arm64 2.12.0-1 [217 kB] 3809s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpich arm64 4.2.1-5 [188 kB] 3809s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 nwchem-mpich arm64 7.2.3-7build1 [13.1 MB] 3810s Fetched 87.2 MB in 3s (25.2 MB/s) 3810s Selecting previously unselected package libllvm17t64:arm64. 3810s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 3810s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 3810s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 3810s Selecting previously unselected package libamd-comgr2:arm64. 3810s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 3810s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 3811s Selecting previously unselected package libhsakmt1:arm64. 3811s Preparing to unpack .../02-libhsakmt1_5.7.0-1build1_arm64.deb ... 3811s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 3811s Selecting previously unselected package libhsa-runtime64-1. 3811s Preparing to unpack .../03-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 3811s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 3811s Selecting previously unselected package libamdhip64-5. 3811s Preparing to unpack .../04-libamdhip64-5_5.7.1-5_arm64.deb ... 3811s Unpacking libamdhip64-5 (5.7.1-5) ... 3811s Selecting previously unselected package libblas3:arm64. 3811s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 3811s Unpacking libblas3:arm64 (3.12.1-2) ... 3811s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 3811s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 3811s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 3811s Selecting previously unselected package librdmacm1t64:arm64. 3811s Preparing to unpack .../07-librdmacm1t64_55.0-1ubuntu1_arm64.deb ... 3811s Unpacking librdmacm1t64:arm64 (55.0-1ubuntu1) ... 3811s Selecting previously unselected package libfabric1:arm64. 3811s Preparing to unpack .../08-libfabric1_1.17.0-3.1_arm64.deb ... 3811s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 3811s Selecting previously unselected package libgfortran5:arm64. 3811s Preparing to unpack .../09-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 3811s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 3811s Selecting previously unselected package libgomp1:arm64. 3811s Preparing to unpack .../10-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 3811s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 3811s Selecting previously unselected package libhwloc15:arm64. 3811s Preparing to unpack .../11-libhwloc15_2.12.0-1_arm64.deb ... 3811s Unpacking libhwloc15:arm64 (2.12.0-1) ... 3811s Selecting previously unselected package liblapack3:arm64. 3811s Preparing to unpack .../12-liblapack3_3.12.1-2_arm64.deb ... 3811s Unpacking liblapack3:arm64 (3.12.1-2) ... 3811s Selecting previously unselected package libmunge2:arm64. 3811s Preparing to unpack .../13-libmunge2_0.5.16-1_arm64.deb ... 3811s Unpacking libmunge2:arm64 (0.5.16-1) ... 3811s Selecting previously unselected package libpciaccess0:arm64. 3811s Preparing to unpack .../14-libpciaccess0_0.17-3build1_arm64.deb ... 3811s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 3811s Selecting previously unselected package libxnvctrl0:arm64. 3811s Preparing to unpack .../15-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 3811s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 3811s Selecting previously unselected package ocl-icd-libopencl1:arm64. 3811s Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 3811s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 3811s Selecting previously unselected package libhwloc-plugins:arm64. 3811s Preparing to unpack .../17-libhwloc-plugins_2.12.0-1_arm64.deb ... 3811s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 3811s Selecting previously unselected package libpmix2t64:arm64. 3811s Preparing to unpack .../18-libpmix2t64_5.0.6-5_arm64.deb ... 3811s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 3812s Selecting previously unselected package libibumad3:arm64. 3812s Preparing to unpack .../19-libibumad3_55.0-1ubuntu1_arm64.deb ... 3812s Unpacking libibumad3:arm64 (55.0-1ubuntu1) ... 3812s Selecting previously unselected package libibmad5:arm64. 3812s Preparing to unpack .../20-libibmad5_55.0-1ubuntu1_arm64.deb ... 3812s Unpacking libibmad5:arm64 (55.0-1ubuntu1) ... 3812s Selecting previously unselected package libucx0:arm64. 3812s Preparing to unpack .../21-libucx0_1.18.1+ds-2_arm64.deb ... 3812s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 3812s Selecting previously unselected package libopenmpi40:arm64. 3812s Preparing to unpack .../22-libopenmpi40_5.0.7-1_arm64.deb ... 3812s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 3812s Selecting previously unselected package openmpi-common. 3812s Preparing to unpack .../23-openmpi-common_5.0.7-1_all.deb ... 3812s Unpacking openmpi-common (5.0.7-1) ... 3812s Selecting previously unselected package openmpi-bin. 3812s Preparing to unpack .../24-openmpi-bin_5.0.7-1_arm64.deb ... 3812s Unpacking openmpi-bin (5.0.7-1) ... 3812s Selecting previously unselected package mpi-default-bin. 3812s Preparing to unpack .../25-mpi-default-bin_1.18_arm64.deb ... 3812s Unpacking mpi-default-bin (1.18) ... 3812s Selecting previously unselected package libmpich12:arm64. 3812s Preparing to unpack .../26-libmpich12_4.2.1-5_arm64.deb ... 3812s Unpacking libmpich12:arm64 (4.2.1-5) ... 3812s Selecting previously unselected package libscalapack-mpich2.2:arm64. 3812s Preparing to unpack .../27-libscalapack-mpich2.2_2.2.2-1ubuntu1_arm64.deb ... 3812s Unpacking libscalapack-mpich2.2:arm64 (2.2.2-1ubuntu1) ... 3812s Selecting previously unselected package libslurm42t64. 3812s Preparing to unpack .../28-libslurm42t64_24.11.1-1_arm64.deb ... 3812s Unpacking libslurm42t64 (24.11.1-1) ... 3812s Selecting previously unselected package nwchem-data. 3812s Preparing to unpack .../29-nwchem-data_7.2.3-7build1_all.deb ... 3812s Unpacking nwchem-data (7.2.3-7build1) ... 3812s Selecting previously unselected package hwloc-nox. 3812s Preparing to unpack .../30-hwloc-nox_2.12.0-1_arm64.deb ... 3812s Unpacking hwloc-nox (2.12.0-1) ... 3812s Selecting previously unselected package mpich. 3812s Preparing to unpack .../31-mpich_4.2.1-5_arm64.deb ... 3812s Unpacking mpich (4.2.1-5) ... 3813s Selecting previously unselected package nwchem-mpich. 3813s Preparing to unpack .../32-nwchem-mpich_7.2.3-7build1_arm64.deb ... 3813s Unpacking nwchem-mpich (7.2.3-7build1) ... 3813s Setting up libpciaccess0:arm64 (0.17-3build1) ... 3813s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 3813s Setting up nwchem-data (7.2.3-7build1) ... 3813s Setting up libibumad3:arm64 (55.0-1ubuntu1) ... 3813s Setting up libibmad5:arm64 (55.0-1ubuntu1) ... 3813s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 3813s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 3813s Setting up libblas3:arm64 (3.12.1-2) ... 3813s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 3813s Setting up libmunge2:arm64 (0.5.16-1) ... 3813s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 3813s Setting up libslurm42t64 (24.11.1-1) ... 3813s Setting up libhwloc15:arm64 (2.12.0-1) ... 3813s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 3813s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 3813s Setting up openmpi-common (5.0.7-1) ... 3813s Setting up librdmacm1t64:arm64 (55.0-1ubuntu1) ... 3813s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 3813s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 3813s Setting up libfabric1:arm64 (1.17.0-3.1) ... 3813s Setting up liblapack3:arm64 (3.12.1-2) ... 3813s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 3813s Setting up hwloc-nox (2.12.0-1) ... 3813s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 3813s Setting up libpmix2t64:arm64 (5.0.6-5) ... 3813s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 3813s Setting up libamdhip64-5 (5.7.1-5) ... 3813s Setting up libucx0:arm64 (1.18.1+ds-2) ... 3813s Setting up libmpich12:arm64 (4.2.1-5) ... 3813s Setting up libopenmpi40:arm64 (5.0.7-1) ... 3813s Setting up mpich (4.2.1-5) ... 3813s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 3813s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 3813s Setting up openmpi-bin (5.0.7-1) ... 3813s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 3813s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 3813s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 3813s Setting up mpi-default-bin (1.18) ... 3813s Setting up libscalapack-mpich2.2:arm64 (2.2.2-1ubuntu1) ... 3813s Setting up nwchem-mpich (7.2.3-7build1) ... 3813s Processing triggers for libc-bin (2.41-1ubuntu2) ... 3813s Processing triggers for man-db (2.13.0-1) ... 3939s autopkgtest [00:48:33]: test testsuite-mpich: [----------------------- 3940s ===== TESTING NWCHEM BUILD FOR mpich ===== 3940s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3940s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3940s 3940s 3940s Running tests/dft_he2+/dft_he2+ 3940s 3940s cleaning scratch 3940s copying input and verified output files 3940s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3940s 3975s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3975s OK 3975s 3975s Running tests/qmmm_grad0/qmmm_grad0 3975s 3975s cleaning scratch 3975s copying input and verified output files 3975s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3975s 3982s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3982s OK 3982s 3982s Running tests/auh2o/auh2o 3982s 3982s cleaning scratch 3982s copying input and verified output files 3982s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3982s 3985s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3985s OK 3985s 3985s Running tests/autosym/autosym 3985s 3985s cleaning scratch 3985s copying input and verified output files 3985s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3985s 4016s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4016s OK 4016s 4016s Running tests/h2mp2/h2mp2 4016s 4016s cleaning scratch 4016s copying input and verified output files 4016s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4016s 4021s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4021s OK 4021s 4021s Running tests/h2o/h2o 4021s 4021s cleaning scratch 4021s copying input and verified output files 4021s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4021s 4023s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4023s OK 4023s 4023s Running tests/hess_h2o/hess_h2o 4023s 4023s cleaning scratch 4023s copying input and verified output files 4023s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4023s 4039s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4039s OK 4039s 4039s Running tests/prop_h2o/prop_h2o 4039s 4039s cleaning scratch 4039s copying input and verified output files 4039s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4039s 4048s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4048s OK 4048s 4048s Running tests/geom_zmatrix/geom_zmatrix 4048s 4048s cleaning scratch 4048s copying input and verified output files 4048s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4048s 4054s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4054s OK 4054s 4054s Running tests/rimp2_ne/rimp2_ne 4054s 4054s cleaning scratch 4054s copying input and verified output files 4054s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4054s 4060s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4060s OK 4060s 4060s Running tests/small_intchk/small_intchk 4060s 4060s cleaning scratch 4060s copying input and verified output files 4060s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4060s 4073s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4073s OK 4073s 4073s Running tests/tagcheck/tagcheck 4073s 4073s cleaning scratch 4073s copying input and verified output files 4073s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4073s 4078s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4078s OK 4078s 4078s Running tests/testtab/testtab 4078s 4078s cleaning scratch 4078s copying input and verified output files 4078s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4078s 4079s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4079s OK 4079s 4079s Running tests/h2o_dk/h2o_dk 4079s 4079s cleaning scratch 4079s copying input and verified output files 4079s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4079s 4091s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4091s OK 4091s 4091s Running tests/cosmo_h2o/cosmo_h2o 4091s 4091s cleaning scratch 4091s copying input and verified output files 4091s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4091s 4095s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4095s OK 4095s 4095s Running tests/ch5n_nbo/ch5n_nbo 4095s 4095s cleaning scratch 4095s copying input and verified output files 4095s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4095s 4096s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4096s OK 4096s 4096s Running tests/h2s_finite/h2s_finite 4096s 4096s cleaning scratch 4096s copying input and verified output files 4096s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4096s 4103s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4103s OK 4103s 4103s Running tests/pyqa3/pyqa3 4103s 4103s cleaning scratch 4103s copying input and verified output files 4103s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4103s 4113s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4113s OK 4113s 4113s Running tests/startag/startag 4113s 4113s cleaning scratch 4113s copying input and verified output files 4113s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4113s 4116s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4116s OK 4116s 4116s Running tests/esp/esp 4116s 4116s cleaning scratch 4116s copying input and verified output files 4116s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4116s 4119s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4119s ESP charges match 4119s 4119s 4119s Running tests/esp_uhf/esp_uhf 4119s 4119s cleaning scratch 4119s copying input and verified output files 4119s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4119s 4125s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4125s ESP charges match 4125s 4125s 4125s Running tests/dft_bsse/dft_bsse 4125s 4125s cleaning scratch 4125s copying input and verified output files 4125s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4125s 4132s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4132s OK 4132s 4132s Running tests/dplot_dft/dplot_dft 4132s 4132s cleaning scratch 4132s copying input and verified output files 4132s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4132s 4134s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4134s OK 4134s 4134s Running tests/dft_meta/dft_meta 4134s 4134s cleaning scratch 4134s copying input and verified output files 4134s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4134s 4197s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4197s OK 4197s 4197s Running tests/dft_mpwb1khf/dft_mpwb1khf 4197s 4197s cleaning scratch 4197s copying input and verified output files 4197s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4197s 4206s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4206s OK 4206s 4206s Running tests/prop_uhf_h2o/prop_uhf_h2o 4206s 4206s cleaning scratch 4206s copying input and verified output files 4206s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4206s 4252s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4252s OK 4252s 4252s Running tests/et_zn_dimer/et_zn_dimer 4252s 4252s cleaning scratch 4252s copying input and verified output files 4252s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4252s 4290s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4290s OK 4290s 4290s Running tests/vectors_rotate/vectors_rotate 4290s 4290s cleaning scratch 4290s copying input and verified output files 4290s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4290s 4295s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4295s OK 4295s 4295s Running tests/sad_ch3hf/sad_ch3hf 4295s 4295s cleaning scratch 4295s copying input and verified output files 4295s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4295s 4331s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4331s OK 4331s 4331s Running tests/band/band 4331s 4331s cleaning scratch 4331s copying input and verified output files 4331s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4331s 4339s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4339s OK 4339s 4339s Running tests/pspw/pspw 4339s 4339s cleaning scratch 4339s copying input and verified output files 4339s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4339s 4354s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4354s OK 4354s 4354s Running tests/pspw_stress/pspw_stress 4354s 4354s cleaning scratch 4354s copying input and verified output files 4354s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4354s 4373s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4373s OK 4373s 4373s Running tests/mcscf_ch2/mcscf_ch2 4373s 4373s cleaning scratch 4373s copying input and verified output files 4373s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4373s 4443s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4443s OK 4443s 4443s Running tests/dft_li2freq/dft_li2freq 4443s 4443s cleaning scratch 4443s copying input and verified output files 4443s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4443s 4511s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4511s OK 4511s 4511s Running tests/n2_ccsd/n2_ccsd 4511s 4511s cleaning scratch 4511s copying input and verified output files 4511s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4511s 4581s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4581s OK 4581s 4581s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 4581s 4581s cleaning scratch 4581s copying input and verified output files 4581s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4581s 4587s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4587s OK 4587s 4587s Running tests/tddft_h2o/tddft_h2o 4587s 4587s cleaning scratch 4587s copying input and verified output files 4587s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4587s 4633s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4633s OK 4633s 4633s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 4633s 4633s cleaning scratch 4633s copying input and verified output files 4633s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4633s 5305s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5305s OK 5305s 5305s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 5305s 5305s cleaning scratch 5305s copying input and verified output files 5305s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5305s 5324s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5324s OK 5324s 5324s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 5324s 5324s cleaning scratch 5324s copying input and verified output files 5324s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5324s 5329s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5329s OK 5329s 5329s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 5329s 5329s cleaning scratch 5329s copying input and verified output files 5329s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5329s 5464s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5464s OK 5464s 5464s Running tests/mp2_scs_n2/mp2_scs_n2 5464s 5464s cleaning scratch 5464s copying input and verified output files 5464s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5464s 5489s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5489s OK 5489s 5489s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 5489s 5489s cleaning scratch 5489s copying input and verified output files 5489s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5489s 5539s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5539s OK 5539s 5539s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 5539s 5539s cleaning scratch 5539s copying input and verified output files 5539s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5539s 5553s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5553s OK 5553s 5553s Running tests/water/water_md 5553s 5553s cleaning scratch 5553s copying input and verified output files 5553s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5553s 5553s verifying nwout ...... skipped 5553s verifying test ....... completed 5553s 5553s Running tests/water/water_pme 5553s 5553s cleaning scratch 5553s copying input and verified output files 5553s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5553s 5553s verifying nwout ...... skipped 5553s verifying test ....... completed 5553s 5553s Running tests/pspw_md/pspw_md 5553s 5553s cleaning scratch 5553s copying input and verified output files 5553s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5553s 5571s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5571s OK 5571s 5571s Running tests/cosmo_h3co/cosmo_h3co 5571s 5571s cleaning scratch 5571s copying input and verified output files 5571s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5571s 5591s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5591s OK 5591s 5591s OK 5591s autopkgtest [01:16:05]: test testsuite-mpich: -----------------------] 5592s autopkgtest [01:16:06]: test testsuite-mpich: - - - - - - - - - - results - - - - - - - - - - 5592s testsuite-mpich PASS 5592s autopkgtest [01:16:06]: @@@@@@@@@@@@@@@@@@@@ summary 5592s testsuite.sh PASS 5592s testsuite-openmpi PASS 5592s testsuite-mpich PASS 5611s nova [W] Using flock in prodstack6-arm64 5611s Creating nova instance adt-plucky-arm64-nwchem-20250315-234254-juju-7f2275-prod-proposed-migration-environment-2-83c9e6bc-686f-4f5d-8cad-750d13384ef9 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 5611s nova [W] Timed out waiting for ad89ab17-24f4-4123-b39c-c76f81f505ba to get deleted. 5611s nova [W] Using flock in prodstack6-arm64 5611s Creating nova instance adt-plucky-arm64-nwchem-20250315-234254-juju-7f2275-prod-proposed-migration-environment-2-83c9e6bc-686f-4f5d-8cad-750d13384ef9 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 5611s nova [W] Timed out waiting for 2b0face7-9823-431d-81c7-648fbebcd286 to get deleted. 5611s nova [W] Using flock in prodstack6-arm64 5611s Creating nova instance adt-plucky-arm64-nwchem-20250315-234254-juju-7f2275-prod-proposed-migration-environment-2-83c9e6bc-686f-4f5d-8cad-750d13384ef9 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 5611s nova [W] Timed out waiting for a001961e-aae0-46d2-9f60-cfd88350d8e0 to get deleted.